HEADER CELL CYCLE 06-MAR-12 4E1H TITLE FRAGMENT OF HUMAN PRION PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: MAJOR PRION PROTEIN; COMPND 3 CHAIN: A, C, E, G, I, K; COMPND 4 FRAGMENT: UNP RESIDUES 177-182; COMPND 5 SYNONYM: PRP, ASCR, PRP27-30, PRP33-35C; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: MAJOR PRION PROTEIN; COMPND 9 CHAIN: B, D, F, H, J, L; COMPND 10 FRAGMENT: UNP RESIDUES 211-216; COMPND 11 SYNONYM: PRP, ASCR, PRP27-30, PRP33-35C; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 4 ORGANISM_COMMON: HUMAN; SOURCE 5 ORGANISM_TAXID: 9606; SOURCE 6 MOL_ID: 2; SOURCE 7 SYNTHETIC: YES; SOURCE 8 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 9 ORGANISM_COMMON: HUMAN; SOURCE 10 ORGANISM_TAXID: 9606 KEYWDS BETA PRISM, AMYLOID-RELATED OLIGOMER, PROTEIN FIBRIL, CELL CYCLE EXPDTA X-RAY DIFFRACTION AUTHOR M.I.APOSTOL,K.PERRY,W.K.SUREWICZ REVDAT 3 15-NOV-17 4E1H 1 REMARK REVDAT 2 27-NOV-13 4E1H 1 JRNL REVDAT 1 06-MAR-13 4E1H 0 JRNL AUTH M.I.APOSTOL,K.PERRY,W.K.SUREWICZ JRNL TITL CRYSTAL STRUCTURE OF A HUMAN PRION PROTEIN FRAGMENT REVEALS JRNL TITL 2 A MOTIF FOR OLIGOMER FORMATION. JRNL REF J.AM.CHEM.SOC. V. 135 10202 2013 JRNL REFN ISSN 0002-7863 JRNL PMID 23808589 JRNL DOI 10.1021/JA403001Q REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 22.55 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 12531 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.167 REMARK 3 R VALUE (WORKING SET) : 0.164 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 649 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.44 REMARK 3 REFLECTION IN BIN (WORKING SET) : 889 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.96 REMARK 3 BIN R VALUE (WORKING SET) : 0.2350 REMARK 3 BIN FREE R VALUE SET COUNT : 59 REMARK 3 BIN FREE R VALUE : 0.3060 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 576 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 55 REMARK 3 SOLVENT ATOMS : 56 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.01 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.25000 REMARK 3 B22 (A**2) : 0.74000 REMARK 3 B33 (A**2) : -1.99000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.087 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.077 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.056 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.167 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.958 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 722 ; 0.016 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 402 ; 0.005 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 992 ; 1.751 ; 2.033 REMARK 3 BOND ANGLES OTHERS (DEGREES): 1034 ; 1.887 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 78 ; 8.611 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 38 ;41.451 ;27.895 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 134 ;14.147 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 114 ; 0.135 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 770 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 86 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 406 ; 2.793 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 146 ; 0.875 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 676 ; 4.399 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 316 ; 5.952 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 302 ; 8.389 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 1124 ; 2.738 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 177 A 182 REMARK 3 ORIGIN FOR THE GROUP (A): 4.1809 19.6316 14.3858 REMARK 3 T TENSOR REMARK 3 T11: 0.0102 T22: 0.0054 REMARK 3 T33: 0.0171 T12: -0.0014 REMARK 3 T13: -0.0050 T23: 0.0019 REMARK 3 L TENSOR REMARK 3 L11: 0.6296 L22: 1.3790 REMARK 3 L33: 0.8900 L12: -0.0081 REMARK 3 L13: -0.3768 L23: 0.6863 REMARK 3 S TENSOR REMARK 3 S11: 0.0168 S12: 0.0016 S13: 0.0124 REMARK 3 S21: 0.0553 S22: -0.0094 S23: 0.0207 REMARK 3 S31: 0.0579 S32: -0.0274 S33: -0.0074 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 177 C 182 REMARK 3 ORIGIN FOR THE GROUP (A): 4.8092 18.5982 23.2379 REMARK 3 T TENSOR REMARK 3 T11: 0.0057 T22: 0.0055 REMARK 3 T33: 0.0235 T12: -0.0027 REMARK 3 T13: -0.0012 T23: 0.0048 REMARK 3 L TENSOR REMARK 3 L11: 0.4594 L22: 3.0614 REMARK 3 L33: 2.1182 L12: -0.4424 REMARK 3 L13: 0.1723 L23: 1.9976 REMARK 3 S TENSOR REMARK 3 S11: 0.0390 S12: -0.0059 S13: -0.0209 REMARK 3 S21: -0.0141 S22: -0.0118 S23: 0.0698 REMARK 3 S31: 0.0484 S32: -0.0516 S33: -0.0272 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : E 177 E 182 REMARK 3 ORIGIN FOR THE GROUP (A): 17.7391 27.4553 23.2640 REMARK 3 T TENSOR REMARK 3 T11: 0.0061 T22: 0.0074 REMARK 3 T33: 0.0206 T12: -0.0002 REMARK 3 T13: 0.0010 T23: -0.0007 REMARK 3 L TENSOR REMARK 3 L11: 0.7597 L22: 0.5872 REMARK 3 L33: 0.4132 L12: 0.1507 REMARK 3 L13: -0.4742 L23: 0.0789 REMARK 3 S TENSOR REMARK 3 S11: -0.0175 S12: -0.0003 S13: -0.0033 REMARK 3 S21: -0.0096 S22: 0.0159 S23: -0.0423 REMARK 3 S31: 0.0121 S32: 0.0005 S33: 0.0015 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : I 177 I 182 REMARK 3 ORIGIN FOR THE GROUP (A): 16.8172 28.4363 13.6636 REMARK 3 T TENSOR REMARK 3 T11: 0.0056 T22: 0.0078 REMARK 3 T33: 0.0192 T12: -0.0005 REMARK 3 T13: -0.0018 T23: 0.0007 REMARK 3 L TENSOR REMARK 3 L11: 0.4392 L22: 2.3172 REMARK 3 L33: 0.3535 L12: -0.6656 REMARK 3 L13: -0.1485 L23: 0.4975 REMARK 3 S TENSOR REMARK 3 S11: 0.0169 S12: 0.0124 S13: -0.0096 REMARK 3 S21: -0.0343 S22: -0.0152 S23: 0.0095 REMARK 3 S31: 0.0042 S32: 0.0044 S33: -0.0018 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : K 177 K 182 REMARK 3 ORIGIN FOR THE GROUP (A): 7.9042 29.1439 12.9383 REMARK 3 T TENSOR REMARK 3 T11: 0.0093 T22: 0.0075 REMARK 3 T33: 0.0274 T12: 0.0000 REMARK 3 T13: -0.0028 T23: -0.0012 REMARK 3 L TENSOR REMARK 3 L11: 0.2150 L22: 0.4764 REMARK 3 L33: 0.3416 L12: -0.2155 REMARK 3 L13: 0.0211 L23: 0.2917 REMARK 3 S TENSOR REMARK 3 S11: -0.0109 S12: -0.0074 S13: 0.0201 REMARK 3 S21: 0.0053 S22: 0.0152 S23: -0.0096 REMARK 3 S31: 0.0044 S32: 0.0110 S33: -0.0043 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES: WITH TLS ADDED REMARK 4 REMARK 4 4E1H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-MAR-12. REMARK 100 THE DEPOSITION ID IS D_1000071049. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-NOV-10; 27-NOV-10 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 3.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : APS; APS REMARK 200 BEAMLINE : 24-ID-C; 24-ID-C REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL; NULL REMARK 200 WAVELENGTH OR RANGE (A) : 1.73964; 0.97918 REMARK 200 MONOCHROMATOR : NULL; NULL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315; ADSC QUANTUM REMARK 200 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13272 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : 0.05900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.45 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.60 REMARK 200 R MERGE FOR SHELL (I) : 0.75600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SAD; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: SHELX, SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 34.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.88 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM CITRATE PH 3.5, 10MM IRON (II) REMARK 280 CHLORIDE, AND 25% PEG 3350, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 16.15850 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 23.17650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 21.44900 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 23.17650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 16.15850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 21.44900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DODECAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DODECAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8880 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 4610 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -89.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F, G, H, I, J, REMARK 350 AND CHAINS: K, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE I 202 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CIT I 203 O7 REMARK 620 2 CIT I 203 O3 92.2 REMARK 620 3 CIT G 202 O7 94.2 95.2 REMARK 620 4 CIT G 202 O6 173.4 84.4 80.5 REMARK 620 5 CIT I 204 O6 99.1 91.3 165.0 86.7 REMARK 620 6 CIT I 204 O7 77.6 165.5 95.7 106.7 80.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE I 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CIT G 203 O1 REMARK 620 2 CIT I 203 O2 91.1 REMARK 620 3 CIT G 203 O7 83.3 94.7 REMARK 620 4 CIT I 203 O7 174.7 92.1 92.2 REMARK 620 5 CIT I 204 O7 102.1 165.8 92.0 75.1 REMARK 620 6 CIT I 204 O2 89.9 87.5 172.9 94.4 87.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE G 201 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CIT G 202 O7 REMARK 620 2 CIT I 203 O6 100.1 REMARK 620 3 CIT G 203 O7 91.9 113.8 REMARK 620 4 CIT G 202 O4 87.3 85.2 160.8 REMARK 620 5 CIT G 203 O4 173.5 85.6 82.9 96.3 REMARK 620 6 CIT G 203 O6 94.3 160.3 78.7 82.2 80.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE G 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CIT G 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CIT G 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE I 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE I 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CIT I 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CIT I 204 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4E1I RELATED DB: PDB DBREF 4E1H A 177 182 UNP P04156 PRIO_HUMAN 177 182 DBREF 4E1H B 211 216 UNP P04156 PRIO_HUMAN 211 216 DBREF 4E1H C 177 182 UNP P04156 PRIO_HUMAN 177 182 DBREF 4E1H D 211 216 UNP P04156 PRIO_HUMAN 211 216 DBREF 4E1H E 177 182 UNP P04156 PRIO_HUMAN 177 182 DBREF 4E1H F 211 216 UNP P04156 PRIO_HUMAN 211 216 DBREF 4E1H G 177 182 UNP P04156 PRIO_HUMAN 177 182 DBREF 4E1H H 211 216 UNP P04156 PRIO_HUMAN 211 216 DBREF 4E1H I 177 182 UNP P04156 PRIO_HUMAN 177 182 DBREF 4E1H J 211 216 UNP P04156 PRIO_HUMAN 211 216 DBREF 4E1H K 177 182 UNP P04156 PRIO_HUMAN 177 182 DBREF 4E1H L 211 216 UNP P04156 PRIO_HUMAN 211 216 SEQRES 1 A 6 HIS ASP CYS VAL ASN ILE SEQRES 1 B 6 GLU GLN MET CYS ILE THR SEQRES 1 C 6 HIS ASP CYS VAL ASN ILE SEQRES 1 D 6 GLU GLN MET CYS ILE THR SEQRES 1 E 6 HIS ASP CYS VAL ASN ILE SEQRES 1 F 6 GLU GLN MET CYS ILE THR SEQRES 1 G 6 HIS ASP CYS VAL ASN ILE SEQRES 1 H 6 GLU GLN MET CYS ILE THR SEQRES 1 I 6 HIS ASP CYS VAL ASN ILE SEQRES 1 J 6 GLU GLN MET CYS ILE THR SEQRES 1 K 6 HIS ASP CYS VAL ASN ILE SEQRES 1 L 6 GLU GLN MET CYS ILE THR HET FE G 201 1 HET CIT G 202 13 HET CIT G 203 13 HET FE I 201 1 HET FE I 202 1 HET CIT I 203 13 HET CIT I 204 13 HETNAM FE FE (III) ION HETNAM CIT CITRIC ACID FORMUL 13 FE 3(FE 3+) FORMUL 14 CIT 4(C6 H8 O7) FORMUL 20 HOH *56(H2 O) SHEET 1 A 4 ASP A 178 ASN A 181 0 SHEET 2 A 4 GLN B 212 ILE B 215 -1 O MET B 213 N VAL A 180 SHEET 3 A 4 GLN D 212 ILE D 215 -1 O CYS D 214 N CYS B 214 SHEET 4 A 4 ASP C 178 ASN C 181 -1 N ASP C 178 O ILE D 215 SHEET 1 B 4 CYS E 179 ASN E 181 0 SHEET 2 B 4 GLN F 212 THR F 216 -1 O MET F 213 N VAL E 180 SHEET 3 B 4 GLN H 212 THR H 216 -1 O CYS H 214 N CYS F 214 SHEET 4 B 4 CYS G 179 ASN G 181 -1 N VAL G 180 O MET H 213 SHEET 1 C 4 ASP I 178 ASN I 181 0 SHEET 2 C 4 GLN J 212 THR J 216 -1 O ILE J 215 N ASP I 178 SHEET 3 C 4 GLN L 212 ILE L 215 -1 O CYS L 214 N CYS J 214 SHEET 4 C 4 CYS K 179 ASN K 181 -1 N VAL K 180 O MET L 213 SSBOND 1 CYS A 179 CYS B 214 1555 1555 2.03 SSBOND 2 CYS C 179 CYS D 214 1555 1555 2.01 SSBOND 3 CYS E 179 CYS F 214 1555 1555 2.05 SSBOND 4 CYS G 179 CYS H 214 1555 1555 2.04 SSBOND 5 CYS I 179 CYS J 214 1555 1555 2.01 SSBOND 6 CYS K 179 CYS L 214 1555 1555 2.03 LINK FE FE I 202 O7 CIT I 203 1555 1555 1.86 LINK O1 CIT G 203 FE FE I 201 1555 1555 1.96 LINK FE FE I 202 O3 CIT I 203 1555 1555 1.97 LINK FE FE G 201 O7 CIT G 202 1555 1555 1.98 LINK FE FE G 201 O6 CIT I 203 1555 1555 1.99 LINK FE FE I 201 O2 CIT I 203 1555 1555 2.00 LINK O7 CIT G 203 FE FE I 201 1555 1555 2.00 LINK FE FE I 201 O7 CIT I 203 1555 1555 2.02 LINK FE FE G 201 O7 CIT G 203 1555 1555 2.03 LINK FE FE G 201 O4 CIT G 202 1555 1555 2.03 LINK O7 CIT G 202 FE FE I 202 1555 1555 2.04 LINK O6 CIT G 202 FE FE I 202 1555 1555 2.04 LINK FE FE I 201 O7 CIT I 204 1555 1555 2.05 LINK FE FE G 201 O4 CIT G 203 1555 1555 2.05 LINK FE FE I 202 O6 CIT I 204 1555 1555 2.06 LINK FE FE I 201 O2 CIT I 204 1555 1555 2.07 LINK FE FE I 202 O7 CIT I 204 1555 1555 2.09 LINK FE FE G 201 O6 CIT G 203 1555 1555 2.25 SITE 1 AC1 5 CIT G 202 CIT G 203 FE I 201 FE I 202 SITE 2 AC1 5 CIT I 203 SITE 1 AC2 14 HOH C 203 HOH C 204 HIS G 177 FE G 201 SITE 2 AC2 14 CIT G 203 GLU H 211 CYS I 179 VAL I 180 SITE 3 AC2 14 ASN I 181 FE I 201 FE I 202 CIT I 203 SITE 4 AC2 14 CIT I 204 GLN J 212 SITE 1 AC3 14 ASP A 178 HIS E 177 HIS G 177 FE G 201 SITE 2 AC3 14 CIT G 202 HOH G 302 HOH G 305 HOH G 306 SITE 3 AC3 14 GLU H 211 FE I 201 FE I 202 CIT I 203 SITE 4 AC3 14 CIT I 204 HOH K 202 SITE 1 AC4 6 FE G 201 CIT G 202 CIT G 203 FE I 202 SITE 2 AC4 6 CIT I 203 CIT I 204 SITE 1 AC5 6 FE G 201 CIT G 202 CIT G 203 FE I 201 SITE 2 AC5 6 CIT I 203 CIT I 204 SITE 1 AC6 13 GLU B 211 GLN B 212 HIS E 177 FE G 201 SITE 2 AC6 13 CIT G 202 CIT G 203 HOH G 307 GLU H 211 SITE 3 AC6 13 FE I 201 FE I 202 CIT I 204 HOH I 302 SITE 4 AC6 13 ASN K 181 SITE 1 AC7 10 THR D 216 HOH D 301 HIS E 177 CIT G 202 SITE 2 AC7 10 CIT G 203 ASN I 181 FE I 201 FE I 202 SITE 3 AC7 10 CIT I 203 GLN J 212 CRYST1 32.317 42.898 46.353 90.00 90.00 90.00 P 21 21 21 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.030943 0.000000 0.000000 0.00000 SCALE2 0.000000 0.023311 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021574 0.00000