HEADER CELL ADHESION 07-MAR-12 4E1T TITLE X-RAY CRYSTAL STRUCTURE OF THE TRANSMEMBRANE BETA-DOMAIN FROM INVASIN TITLE 2 FROM YERSINIA PSEUDOTUBERCULOSIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: INVASIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: TRANSMEMBRANE DOMAIN (UNP RESIDUES 147-390); COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: YERSINIA PSEUDOTUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 633; SOURCE 4 GENE: INVASIN, YPTB1668; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET KEYWDS OUTER MEMBRANE BETA BARREL, ADHESIN, INTEGRIN, CELL ADHESION EXPDTA X-RAY DIFFRACTION AUTHOR J.W.FAIRMAN,N.DAUTIN,D.WOJTOWICZ,L.WEI,N.NOINAJ,T.J.BARNARD,E.UDHO, AUTHOR 2 A.FINKELSTEIN,T.M.PRZYTYCKA,V.CHEREZOV,S.K.BUCHANAN REVDAT 3 13-SEP-23 4E1T 1 REMARK SEQADV REVDAT 2 25-JUL-12 4E1T 1 JRNL REVDAT 1 13-JUN-12 4E1T 0 JRNL AUTH J.W.FAIRMAN,N.DAUTIN,D.WOJTOWICZ,W.LIU,N.NOINAJ,T.J.BARNARD, JRNL AUTH 2 E.UDHO,T.M.PRZYTYCKA,V.CHEREZOV,S.K.BUCHANAN JRNL TITL CRYSTAL STRUCTURES OF THE OUTER MEMBRANE DOMAIN OF INTIMIN JRNL TITL 2 AND INVASIN FROM ENTEROHEMORRHAGIC E. COLI AND JRNL TITL 3 ENTEROPATHOGENIC Y. PSEUDOTUBERCULOSIS. JRNL REF STRUCTURE V. 20 1233 2012 JRNL REFN ISSN 0969-2126 JRNL PMID 22658748 JRNL DOI 10.1016/J.STR.2012.04.011 REMARK 2 REMARK 2 RESOLUTION. 2.26 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.26 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.79 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 90.6 REMARK 3 NUMBER OF REFLECTIONS : 14016 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.260 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 709 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.26 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.32 REMARK 3 REFLECTION IN BIN (WORKING SET) : 626 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 57.90 REMARK 3 BIN R VALUE (WORKING SET) : 0.2700 REMARK 3 BIN FREE R VALUE SET COUNT : 30 REMARK 3 BIN FREE R VALUE : 0.4200 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1960 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 283 REMARK 3 SOLVENT ATOMS : 117 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 50.29 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.46000 REMARK 3 B22 (A**2) : 1.15000 REMARK 3 B33 (A**2) : -2.61000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.350 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.260 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.177 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 15.193 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.893 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2279 ; 0.017 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3003 ; 1.954 ; 2.032 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 243 ; 6.926 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 109 ;42.565 ;23.945 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 314 ;17.787 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;21.553 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 293 ; 0.130 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1679 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1209 ; 0.782 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1922 ; 1.444 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1070 ; 2.566 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1081 ; 3.913 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 146 A 163 REMARK 3 ORIGIN FOR THE GROUP (A): -22.5865 30.1543 7.0525 REMARK 3 T TENSOR REMARK 3 T11: 0.0745 T22: 0.2056 REMARK 3 T33: 0.0685 T12: 0.0203 REMARK 3 T13: -0.0064 T23: 0.0793 REMARK 3 L TENSOR REMARK 3 L11: 5.3904 L22: 9.3814 REMARK 3 L33: 7.3655 L12: 3.3922 REMARK 3 L13: 3.4824 L23: 6.4575 REMARK 3 S TENSOR REMARK 3 S11: 0.1125 S12: -0.1072 S13: -0.1053 REMARK 3 S21: -0.5473 S22: 0.0528 S23: 0.0423 REMARK 3 S31: -0.2469 S32: -0.3476 S33: -0.1652 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 164 A 192 REMARK 3 ORIGIN FOR THE GROUP (A): -12.2450 33.0688 13.4330 REMARK 3 T TENSOR REMARK 3 T11: 0.0286 T22: 0.1260 REMARK 3 T33: 0.0006 T12: 0.0279 REMARK 3 T13: -0.0055 T23: -0.0402 REMARK 3 L TENSOR REMARK 3 L11: 8.4427 L22: 11.8986 REMARK 3 L33: 2.4995 L12: 7.9412 REMARK 3 L13: 2.2063 L23: 2.7623 REMARK 3 S TENSOR REMARK 3 S11: -0.0411 S12: -0.0830 S13: 0.1186 REMARK 3 S21: -0.1995 S22: -0.0039 S23: 0.0982 REMARK 3 S31: -0.0850 S32: -0.1305 S33: 0.0451 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 193 A 295 REMARK 3 ORIGIN FOR THE GROUP (A): -8.2272 24.9394 4.8581 REMARK 3 T TENSOR REMARK 3 T11: 0.0639 T22: 0.0738 REMARK 3 T33: 0.0363 T12: -0.0198 REMARK 3 T13: -0.0151 T23: -0.0211 REMARK 3 L TENSOR REMARK 3 L11: 1.2928 L22: 3.1343 REMARK 3 L33: 2.4255 L12: -0.8204 REMARK 3 L13: 0.3397 L23: -0.8692 REMARK 3 S TENSOR REMARK 3 S11: 0.0351 S12: 0.0728 S13: -0.0607 REMARK 3 S21: -0.2758 S22: 0.0049 S23: -0.0085 REMARK 3 S31: 0.3247 S32: 0.0131 S33: -0.0401 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 298 A 311 REMARK 3 ORIGIN FOR THE GROUP (A): -9.4451 9.1942 -2.2111 REMARK 3 T TENSOR REMARK 3 T11: 0.4000 T22: 0.1108 REMARK 3 T33: 0.0984 T12: -0.0726 REMARK 3 T13: -0.1909 T23: 0.0105 REMARK 3 L TENSOR REMARK 3 L11: 0.1419 L22: 9.6983 REMARK 3 L33: 19.6212 L12: 5.8049 REMARK 3 L13: -1.6023 L23: -4.5366 REMARK 3 S TENSOR REMARK 3 S11: 0.3165 S12: -0.6737 S13: -0.3176 REMARK 3 S21: -0.4300 S22: -0.6096 S23: 0.2199 REMARK 3 S31: 0.6296 S32: 0.4356 S33: 0.2931 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 312 A 390 REMARK 3 ORIGIN FOR THE GROUP (A): -18.9571 31.3423 1.9355 REMARK 3 T TENSOR REMARK 3 T11: 0.1436 T22: 0.1669 REMARK 3 T33: 0.1349 T12: -0.0050 REMARK 3 T13: -0.0596 T23: -0.0033 REMARK 3 L TENSOR REMARK 3 L11: 1.6439 L22: 1.4118 REMARK 3 L33: 1.2268 L12: -0.5007 REMARK 3 L13: 0.0577 L23: -0.1931 REMARK 3 S TENSOR REMARK 3 S11: 0.0557 S12: 0.0236 S13: -0.0984 REMARK 3 S21: -0.1277 S22: -0.0773 S23: 0.4617 REMARK 3 S31: 0.0444 S32: -0.1949 S33: 0.0216 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 3 U VALUES : RESIDUAL ONLY REMARK 4 REMARK 4 4E1T COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-MAR-12. REMARK 100 THE DEPOSITION ID IS D_1000071061. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-JUN-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.034375 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : K-B PAIR OF BIOMORPH MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : BLUICE REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14111 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.263 REMARK 200 RESOLUTION RANGE LOW (A) : 67.007 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.300 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.7 REMARK 200 DATA REDUNDANCY : 5.100 REMARK 200 R MERGE (I) : 0.13300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 8.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.26 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 76.2 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : 0.59900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4E1S REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.58 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.05 M SODIUM CITRATE, PH 3.8-4.4, 0.2 REMARK 280 M LITHIUM SULFATE, 23-35% PEG400, LIPIDIC CUBIC PHASE MONOOLEIN, REMARK 280 TEMPERATURE 294K, PH 4.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 32.53650 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 32.53650 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 39.70200 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 62.44250 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 39.70200 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 62.44250 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 32.53650 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 39.70200 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 62.44250 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 32.53650 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 39.70200 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 62.44250 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 165 CG CD CE NZ REMARK 470 ARG A 298 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 531 O HOH A 532 1.75 REMARK 500 O HOH A 540 O HOH A 541 2.07 REMARK 500 OD2 ASP A 177 NH2 ARG A 375 2.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 148 NE - CZ - NH1 ANGL. DEV. = -3.2 DEGREES REMARK 500 LEU A 207 CA - CB - CG ANGL. DEV. = 14.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 147 -47.54 -169.25 REMARK 500 ALA A 179 -6.88 -54.72 REMARK 500 TYR A 240 -0.06 74.02 REMARK 500 ASP A 262 -9.56 89.85 REMARK 500 LEU A 282 78.28 -160.44 REMARK 500 ALA A 300 48.28 -92.42 REMARK 500 ASN A 306 47.24 -147.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 OLC A 402 REMARK 610 OLC A 407 REMARK 610 OLC A 412 REMARK 610 OLC A 413 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OLC A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OLC A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OLC A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OLC A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OLB A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OLC A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OLC A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OLC A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OLC A 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OLC A 410 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OLC A 411 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OLC A 412 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE OLC A 413 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4E1S RELATED DB: PDB REMARK 900 INTIMIN BETA-DOMAIN DBREF 4E1T A 147 390 UNP P11922 INVA_YERPS 147 390 SEQADV 4E1T MET A 146 UNP P11922 INITIATING METHIONINE SEQADV 4E1T PHE A 352 UNP P11922 LEU 352 ENGINEERED MUTATION SEQRES 1 A 245 MET ASN ARG PHE GLY THR ALA GLN VAL ASN LEU ASN PHE SEQRES 2 A 245 ASP LYS ASN PHE SER LEU LYS GLU SER SER LEU ASP TRP SEQRES 3 A 245 LEU ALA PRO TRP TYR ASP SER ALA SER PHE LEU PHE PHE SEQRES 4 A 245 SER GLN LEU GLY ILE ARG ASN LYS ASP SER ARG ASN THR SEQRES 5 A 245 LEU ASN LEU GLY VAL GLY ILE ARG THR LEU GLU ASN GLY SEQRES 6 A 245 TRP LEU TYR GLY LEU ASN THR PHE TYR ASP ASN ASP LEU SEQRES 7 A 245 THR GLY HIS ASN HIS ARG ILE GLY LEU GLY ALA GLU ALA SEQRES 8 A 245 TRP THR ASP TYR LEU GLN LEU ALA ALA ASN GLY TYR PHE SEQRES 9 A 245 ARG LEU ASN GLY TRP HIS SER SER ARG ASP PHE SER ASP SEQRES 10 A 245 TYR LYS GLU ARG PRO ALA THR GLY GLY ASP LEU ARG ALA SEQRES 11 A 245 ASN ALA TYR LEU PRO ALA LEU PRO GLN LEU GLY GLY LYS SEQRES 12 A 245 LEU MET TYR GLU GLN TYR THR GLY GLU ARG VAL ALA LEU SEQRES 13 A 245 PHE GLY LYS ASP ASN LEU GLN ARG ASN PRO TYR ALA VAL SEQRES 14 A 245 THR ALA GLY ILE ASN TYR THR PRO VAL PRO LEU LEU THR SEQRES 15 A 245 VAL GLY VAL ASP GLN ARG MET GLY LYS SER SER LYS HIS SEQRES 16 A 245 GLU THR GLN TRP ASN LEU GLN MET ASN TYR ARG PHE GLY SEQRES 17 A 245 GLU SER PHE GLN SER GLN LEU SER PRO SER ALA VAL ALA SEQRES 18 A 245 GLY THR ARG LEU LEU ALA GLU SER ARG TYR ASN LEU VAL SEQRES 19 A 245 ASP ARG ASN ASN ASN ILE VAL LEU GLU TYR GLN HET OLC A 401 25 HET OLC A 402 19 HET OLC A 403 25 HET OLC A 404 25 HET OLB A 405 25 HET OLC A 406 25 HET OLC A 407 17 HET OLC A 408 25 HET OLC A 409 25 HET OLC A 410 25 HET OLC A 411 25 HET OLC A 412 14 HET OLC A 413 8 HETNAM OLC (2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-ENOATE HETNAM OLB (2S)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-ENOATE HETSYN OLC 1-OLEOYL-R-GLYCEROL FORMUL 2 OLC 12(C21 H40 O4) FORMUL 6 OLB C21 H40 O4 FORMUL 15 HOH *117(H2 O) HELIX 1 1 LYS A 336 SER A 338 5 3 HELIX 2 2 SER A 355 LEU A 360 1 6 HELIX 3 3 SER A 361 SER A 363 5 3 HELIX 4 4 ALA A 364 ARG A 369 1 6 HELIX 5 5 LEU A 370 ARG A 375 1 6 SHEET 1 A13 THR A 151 PHE A 158 0 SHEET 2 A13 LEU A 164 ASP A 177 -1 SHEET 3 A13 PHE A 181 LYS A 192 -1 O SER A 185 N ALA A 173 SHEET 4 A13 ARG A 195 GLU A 208 -1 O ASN A 199 N GLY A 188 SHEET 5 A13 TRP A 211 ASP A 222 -1 O LEU A 215 N ILE A 204 SHEET 6 A13 ASN A 227 THR A 238 -1 O ARG A 229 N ASP A 220 SHEET 7 A13 LEU A 241 ARG A 250 -1 O PHE A 249 N ILE A 230 SHEET 8 A13 GLY A 270 LEU A 279 -1 O ARG A 274 N ALA A 244 SHEET 9 A13 LEU A 282 TYR A 294 -1 O GLY A 287 N ALA A 277 SHEET 10 A13 TYR A 312 VAL A 323 -1 O ASN A 319 N GLY A 286 SHEET 11 A13 LEU A 326 MET A 334 -1 O VAL A 328 N TYR A 320 SHEET 12 A13 HIS A 340 ARG A 351 -1 O GLN A 343 N ASP A 331 SHEET 13 A13 THR A 151 PHE A 158 -1 N ALA A 152 O TYR A 350 SHEET 1 B 3 HIS A 255 SER A 256 0 SHEET 2 B 3 LYS A 264 PRO A 267 -1 O GLU A 265 N HIS A 255 SHEET 3 B 3 LEU A 387 GLN A 390 -1 O GLU A 388 N ARG A 266 SITE 1 AC1 8 ASN A 221 HIS A 226 HIS A 228 ARG A 250 SITE 2 AC1 8 TYR A 320 OLC A 402 HOH A 524 HOH A 564 SITE 1 AC2 9 LEU A 200 THR A 217 PHE A 218 TYR A 219 SITE 2 AC2 9 LEU A 232 ARG A 250 OLC A 401 OLC A 409 SITE 3 AC2 9 OLC A 411 SITE 1 AC3 3 TRP A 211 TYR A 213 OLB A 405 SITE 1 AC4 7 LYS A 160 TRP A 175 LEU A 215 LEU A 232 SITE 2 AC4 7 OLB A 405 OLC A 409 OLC A 411 SITE 1 AC5 6 THR A 206 GLY A 214 LEU A 215 OLC A 403 SITE 2 AC5 6 OLC A 404 HOH A 561 SITE 1 AC6 5 LEU A 169 ILE A 189 THR A 238 ASP A 239 SITE 2 AC6 5 ILE A 318 SITE 1 AC7 4 ALA A 316 ILE A 318 VAL A 330 GLN A 332 SITE 1 AC8 7 VAL A 154 TYR A 312 GLY A 335 MET A 348 SITE 2 AC8 7 TYR A 350 PHE A 356 HOH A 576 SITE 1 AC9 11 PHE A 149 TRP A 171 ALA A 173 PRO A 174 SITE 2 AC9 11 TRP A 175 SER A 185 GLY A 203 THR A 217 SITE 3 AC9 11 TRP A 344 OLC A 402 OLC A 404 SITE 1 BC1 8 VAL A 154 LEU A 164 LYS A 165 SER A 167 SITE 2 BC1 8 ASN A 191 ASN A 196 OLC A 413 HOH A 530 SITE 1 BC2 9 PHE A 249 ARG A 250 TRP A 254 ARG A 266 SITE 2 BC2 9 TYR A 320 GLN A 390 OLC A 402 OLC A 404 SITE 3 BC2 9 OLC A 412 SITE 1 BC3 7 LEU A 232 ALA A 234 ALA A 245 ASN A 246 SITE 2 BC3 7 GLY A 247 LEU A 273 OLC A 411 SITE 1 BC4 4 ASN A 191 SER A 194 ASN A 196 OLC A 410 CRYST1 79.404 124.885 65.073 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012594 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008007 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015367 0.00000