data_4E1U # _entry.id 4E1U # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4E1U pdb_00004e1u 10.2210/pdb4e1u/pdb NDB NA1657 ? ? RCSB RCSB071062 ? ? WWPDB D_1000071062 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-06-20 2 'Structure model' 1 1 2013-02-20 3 'Structure model' 1 2 2013-06-19 4 'Structure model' 1 3 2024-02-28 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Non-polymer description' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_struct_conn_angle 5 4 'Structure model' struct_conn 6 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_alt_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_asym_id' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 14 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 15 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 16 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 17 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_alt_id' 18 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 19 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 20 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 21 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 22 4 'Structure model' '_pdbx_struct_conn_angle.value' 23 4 'Structure model' '_struct_conn.pdbx_dist_value' 24 4 'Structure model' '_struct_conn.pdbx_ptnr1_label_alt_id' 25 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 26 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 27 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 28 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 29 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 30 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 31 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 32 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 33 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 34 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 35 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 36 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 37 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 38 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 39 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 40 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4E1U _pdbx_database_status.recvd_initial_deposition_date 2012-03-07 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Song, H.' 1 'Kaiser, J.T.' 2 'Barton, J.K.' 3 # _citation.id primary _citation.title 'Crystal structure of delta-[Ru(bpy)2dppz]2+ bound to mismatched DNA reveals side-by-side metalloinsertion and intercalation.' _citation.journal_abbrev 'Nat Chem' _citation.journal_volume 4 _citation.page_first 615 _citation.page_last 620 _citation.year 2012 _citation.journal_id_ASTM ? _citation.country UK _citation.journal_id_ISSN 1755-4349 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22824892 _citation.pdbx_database_id_DOI 10.1038/nchem.1375 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Song, H.' 1 ? primary 'Kaiser, J.T.' 2 ? primary 'Barton, J.K.' 3 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*CP*GP*GP*AP*AP*AP*TP*TP*AP*CP*CP*G)-3'" 3671.418 2 ? ? ? ? 2 non-polymer syn 'Delta-[Ru(bpy)2dppz]2+' 695.737 5 ? ? ? ? 3 non-polymer syn 'BARIUM ION' 137.327 2 ? ? ? ? 4 water nat water 18.015 197 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DC)(DG)(DG)(DA)(DA)(DA)(DT)(DT)(DA)(DC)(DC)(DG)' _entity_poly.pdbx_seq_one_letter_code_can CGGAAATTACCG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'Delta-[Ru(bpy)2dppz]2+' R1Z 3 'BARIUM ION' BA 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DG n 1 3 DG n 1 4 DA n 1 5 DA n 1 6 DA n 1 7 DT n 1 8 DT n 1 9 DA n 1 10 DC n 1 11 DC n 1 12 DG n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'Engineered mismatch' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight BA non-polymer . 'BARIUM ION' ? 'Ba 2' 137.327 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 R1Z non-polymer . 'Delta-[Ru(bpy)2dppz]2+' ? 'C38 H26 N8 Ru' 695.737 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC DC A . n A 1 2 DG 2 2 2 DG DG A . n A 1 3 DG 3 3 3 DG DG A . n A 1 4 DA 4 4 4 DA DA A . n A 1 5 DA 5 5 5 DA DA A . n A 1 6 DA 6 6 6 DA DA A . n A 1 7 DT 7 7 7 DT DT A . n A 1 8 DT 8 8 8 DT DT A . n A 1 9 DA 9 9 9 DA DA A . n A 1 10 DC 10 10 10 DC DC A . n A 1 11 DC 11 11 11 DC DC A . n A 1 12 DG 12 12 12 DG DG A . n B 1 1 DC 1 1 1 DC DC B . n B 1 2 DG 2 2 2 DG DG B . n B 1 3 DG 3 3 3 DG DG B . n B 1 4 DA 4 4 4 DA DA B . n B 1 5 DA 5 5 5 DA DA B . n B 1 6 DA 6 6 6 DA DA B . n B 1 7 DT 7 7 7 DT DT B . n B 1 8 DT 8 8 8 DT DT B . n B 1 9 DA 9 9 9 DA DA B . n B 1 10 DC 10 10 10 DC DC B . n B 1 11 DC 11 11 11 DC DC B . n B 1 12 DG 12 12 12 DG DG B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 R1Z 1 101 905 R1Z R1Z A . D 2 R1Z 1 102 904 R1Z R1Z A . E 2 R1Z 1 103 903 R1Z R1Z A . F 2 R1Z 1 104 902 R1Z R1Z A . G 2 R1Z 1 105 901 R1Z R1Z A . H 3 BA 1 106 2 BA BA A . I 3 BA 1 101 1 BA BA B . J 4 HOH 1 201 2 HOH HOH A . J 4 HOH 2 202 3 HOH HOH A . J 4 HOH 3 203 5 HOH HOH A . J 4 HOH 4 204 6 HOH HOH A . J 4 HOH 5 205 9 HOH HOH A . J 4 HOH 6 206 12 HOH HOH A . J 4 HOH 7 207 17 HOH HOH A . J 4 HOH 8 208 19 HOH HOH A . J 4 HOH 9 209 20 HOH HOH A . J 4 HOH 10 210 21 HOH HOH A . J 4 HOH 11 211 22 HOH HOH A . J 4 HOH 12 212 24 HOH HOH A . J 4 HOH 13 213 25 HOH HOH A . J 4 HOH 14 214 26 HOH HOH A . J 4 HOH 15 215 27 HOH HOH A . J 4 HOH 16 216 34 HOH HOH A . J 4 HOH 17 217 35 HOH HOH A . J 4 HOH 18 218 36 HOH HOH A . J 4 HOH 19 219 37 HOH HOH A . J 4 HOH 20 220 38 HOH HOH A . J 4 HOH 21 221 40 HOH HOH A . J 4 HOH 22 222 41 HOH HOH A . J 4 HOH 23 223 45 HOH HOH A . J 4 HOH 24 224 48 HOH HOH A . J 4 HOH 25 225 50 HOH HOH A . J 4 HOH 26 226 52 HOH HOH A . J 4 HOH 27 227 53 HOH HOH A . J 4 HOH 28 228 54 HOH HOH A . J 4 HOH 29 229 56 HOH HOH A . J 4 HOH 30 230 60 HOH HOH A . J 4 HOH 31 231 61 HOH HOH A . J 4 HOH 32 232 62 HOH HOH A . J 4 HOH 33 233 63 HOH HOH A . J 4 HOH 34 234 65 HOH HOH A . J 4 HOH 35 235 66 HOH HOH A . J 4 HOH 36 236 68 HOH HOH A . J 4 HOH 37 237 69 HOH HOH A . J 4 HOH 38 238 70 HOH HOH A . J 4 HOH 39 239 72 HOH HOH A . J 4 HOH 40 240 73 HOH HOH A . J 4 HOH 41 241 75 HOH HOH A . J 4 HOH 42 242 76 HOH HOH A . J 4 HOH 43 243 77 HOH HOH A . J 4 HOH 44 244 89 HOH HOH A . J 4 HOH 45 245 91 HOH HOH A . J 4 HOH 46 246 93 HOH HOH A . J 4 HOH 47 247 96 HOH HOH A . J 4 HOH 48 248 97 HOH HOH A . J 4 HOH 49 249 98 HOH HOH A . J 4 HOH 50 250 99 HOH HOH A . J 4 HOH 51 251 100 HOH HOH A . J 4 HOH 52 252 103 HOH HOH A . J 4 HOH 53 253 105 HOH HOH A . J 4 HOH 54 254 110 HOH HOH A . J 4 HOH 55 255 111 HOH HOH A . J 4 HOH 56 256 112 HOH HOH A . J 4 HOH 57 257 115 HOH HOH A . J 4 HOH 58 258 117 HOH HOH A . J 4 HOH 59 259 122 HOH HOH A . J 4 HOH 60 260 124 HOH HOH A . J 4 HOH 61 261 127 HOH HOH A . J 4 HOH 62 262 133 HOH HOH A . J 4 HOH 63 263 134 HOH HOH A . J 4 HOH 64 264 135 HOH HOH A . J 4 HOH 65 265 136 HOH HOH A . J 4 HOH 66 266 137 HOH HOH A . J 4 HOH 67 267 143 HOH HOH A . J 4 HOH 68 268 144 HOH HOH A . J 4 HOH 69 269 148 HOH HOH A . J 4 HOH 70 270 149 HOH HOH A . J 4 HOH 71 271 153 HOH HOH A . J 4 HOH 72 272 159 HOH HOH A . J 4 HOH 73 273 163 HOH HOH A . J 4 HOH 74 274 167 HOH HOH A . J 4 HOH 75 275 168 HOH HOH A . J 4 HOH 76 276 169 HOH HOH A . J 4 HOH 77 277 173 HOH HOH A . J 4 HOH 78 278 176 HOH HOH A . J 4 HOH 79 279 178 HOH HOH A . J 4 HOH 80 280 180 HOH HOH A . J 4 HOH 81 281 183 HOH HOH A . J 4 HOH 82 282 184 HOH HOH A . J 4 HOH 83 283 189 HOH HOH A . J 4 HOH 84 284 192 HOH HOH A . J 4 HOH 85 285 194 HOH HOH A . J 4 HOH 86 286 196 HOH HOH A . K 4 HOH 1 1001 1 HOH HOH B . K 4 HOH 2 1002 4 HOH HOH B . K 4 HOH 3 1003 7 HOH HOH B . K 4 HOH 4 1004 8 HOH HOH B . K 4 HOH 5 1005 10 HOH HOH B . K 4 HOH 6 1006 11 HOH HOH B . K 4 HOH 7 1007 13 HOH HOH B . K 4 HOH 8 1008 14 HOH HOH B . K 4 HOH 9 1009 15 HOH HOH B . K 4 HOH 10 1010 16 HOH HOH B . K 4 HOH 11 1011 18 HOH HOH B . K 4 HOH 12 1012 23 HOH HOH B . K 4 HOH 13 1013 28 HOH HOH B . K 4 HOH 14 1014 29 HOH HOH B . K 4 HOH 15 1015 30 HOH HOH B . K 4 HOH 16 1016 31 HOH HOH B . K 4 HOH 17 1017 32 HOH HOH B . K 4 HOH 18 1018 33 HOH HOH B . K 4 HOH 19 1019 39 HOH HOH B . K 4 HOH 20 1020 42 HOH HOH B . K 4 HOH 21 1021 43 HOH HOH B . K 4 HOH 22 1022 44 HOH HOH B . K 4 HOH 23 1023 46 HOH HOH B . K 4 HOH 24 1024 47 HOH HOH B . K 4 HOH 25 1025 49 HOH HOH B . K 4 HOH 26 1026 51 HOH HOH B . K 4 HOH 27 1027 55 HOH HOH B . K 4 HOH 28 1028 57 HOH HOH B . K 4 HOH 29 1029 58 HOH HOH B . K 4 HOH 30 1030 59 HOH HOH B . K 4 HOH 31 1031 64 HOH HOH B . K 4 HOH 32 1032 67 HOH HOH B . K 4 HOH 33 1033 71 HOH HOH B . K 4 HOH 34 1034 74 HOH HOH B . K 4 HOH 35 1035 78 HOH HOH B . K 4 HOH 36 1036 79 HOH HOH B . K 4 HOH 37 1037 80 HOH HOH B . K 4 HOH 38 1038 81 HOH HOH B . K 4 HOH 39 1039 82 HOH HOH B . K 4 HOH 40 1040 83 HOH HOH B . K 4 HOH 41 1041 84 HOH HOH B . K 4 HOH 42 1042 85 HOH HOH B . K 4 HOH 43 1043 86 HOH HOH B . K 4 HOH 44 1044 87 HOH HOH B . K 4 HOH 45 1045 88 HOH HOH B . K 4 HOH 46 1046 90 HOH HOH B . K 4 HOH 47 1047 92 HOH HOH B . K 4 HOH 48 1048 94 HOH HOH B . K 4 HOH 49 1049 95 HOH HOH B . K 4 HOH 50 1050 101 HOH HOH B . K 4 HOH 51 1051 102 HOH HOH B . K 4 HOH 52 1052 104 HOH HOH B . K 4 HOH 53 1053 106 HOH HOH B . K 4 HOH 54 1054 107 HOH HOH B . K 4 HOH 55 1055 108 HOH HOH B . K 4 HOH 56 1056 109 HOH HOH B . K 4 HOH 57 1057 113 HOH HOH B . K 4 HOH 58 1058 114 HOH HOH B . K 4 HOH 59 1059 116 HOH HOH B . K 4 HOH 60 1060 118 HOH HOH B . K 4 HOH 61 1061 119 HOH HOH B . K 4 HOH 62 1062 120 HOH HOH B . K 4 HOH 63 1063 121 HOH HOH B . K 4 HOH 64 1064 123 HOH HOH B . K 4 HOH 65 1065 125 HOH HOH B . K 4 HOH 66 1066 126 HOH HOH B . K 4 HOH 67 1067 128 HOH HOH B . K 4 HOH 68 1068 129 HOH HOH B . K 4 HOH 69 1069 130 HOH HOH B . K 4 HOH 70 1070 131 HOH HOH B . K 4 HOH 71 1071 132 HOH HOH B . K 4 HOH 72 1072 138 HOH HOH B . K 4 HOH 73 1073 139 HOH HOH B . K 4 HOH 74 1074 140 HOH HOH B . K 4 HOH 75 1075 141 HOH HOH B . K 4 HOH 76 1076 142 HOH HOH B . K 4 HOH 77 1077 145 HOH HOH B . K 4 HOH 78 1078 146 HOH HOH B . K 4 HOH 79 1079 147 HOH HOH B . K 4 HOH 80 1080 150 HOH HOH B . K 4 HOH 81 1081 151 HOH HOH B . K 4 HOH 82 1082 152 HOH HOH B . K 4 HOH 83 1083 154 HOH HOH B . K 4 HOH 84 1084 155 HOH HOH B . K 4 HOH 85 1085 156 HOH HOH B . K 4 HOH 86 1086 157 HOH HOH B . K 4 HOH 87 1087 158 HOH HOH B . K 4 HOH 88 1088 160 HOH HOH B . K 4 HOH 89 1089 161 HOH HOH B . K 4 HOH 90 1090 162 HOH HOH B . K 4 HOH 91 1091 164 HOH HOH B . K 4 HOH 92 1092 165 HOH HOH B . K 4 HOH 93 1093 166 HOH HOH B . K 4 HOH 94 1094 170 HOH HOH B . K 4 HOH 95 1095 171 HOH HOH B . K 4 HOH 96 1096 172 HOH HOH B . K 4 HOH 97 1097 174 HOH HOH B . K 4 HOH 98 1098 175 HOH HOH B . K 4 HOH 99 1099 177 HOH HOH B . K 4 HOH 100 1100 179 HOH HOH B . K 4 HOH 101 1101 181 HOH HOH B . K 4 HOH 102 1102 182 HOH HOH B . K 4 HOH 103 1103 185 HOH HOH B . K 4 HOH 104 1104 186 HOH HOH B . K 4 HOH 105 1105 187 HOH HOH B . K 4 HOH 106 1106 188 HOH HOH B . K 4 HOH 107 1107 190 HOH HOH B . K 4 HOH 108 1108 191 HOH HOH B . K 4 HOH 109 1109 193 HOH HOH B . K 4 HOH 110 1110 195 HOH HOH B . K 4 HOH 111 1111 197 HOH HOH B . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal Blu-Ice 'data collection' . ? 1 SHELXD phasing . ? 2 PHENIX refinement '(phenix.refine: 1.7.3_928)' ? 3 XDS 'data reduction' . ? 4 SCALA 'data scaling' . ? 5 # _cell.entry_id 4E1U _cell.length_a 24.039 _cell.length_b 24.797 _cell.length_c 37.521 _cell.angle_alpha 74.67 _cell.angle_beta 84.42 _cell.angle_gamma 76.21 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4E1U _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? # _exptl.entry_id 4E1U _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.85 _exptl_crystal.density_percent_sol 56.86 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.temp 296 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pdbx_details '20mM Cacodylate; 6mM Spermine*HCl; 40mM NaCl; 10mM BaCl2 5% 2-M-2,4PD, pH 7.0, VAPOR DIFFUSION, temperature 296K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector PIXEL _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.pdbx_collection_date 2010-12-03 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength .7749 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SSRL BEAMLINE BL12-2' _diffrn_source.pdbx_synchrotron_site SSRL _diffrn_source.pdbx_synchrotron_beamline BL12-2 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list .7749 # _reflns.entry_id 4E1U _reflns.observed_criterion_sigma_I -1 _reflns.observed_criterion_sigma_F -1 _reflns.d_resolution_low 36 _reflns.d_resolution_high 0.92 _reflns.number_obs 46920 _reflns.number_all ? _reflns.percent_possible_obs 82.7 _reflns.pdbx_Rmerge_I_obs 0.030 _reflns.pdbx_Rsym_value 0.030 _reflns.pdbx_netI_over_sigmaI 20.0 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 3.9 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _refine.entry_id 4E1U _refine.ls_number_reflns_obs 46920 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.98 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 23.330 _refine.ls_d_res_high 0.920 _refine.ls_percent_reflns_obs 81.74 _refine.ls_R_factor_obs 0.1401 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1397 _refine.ls_R_factor_R_free 0.1490 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.10 _refine.ls_number_reflns_R_free 4695 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] -0.2315 _refine.aniso_B[2][2] 1.5877 _refine.aniso_B[3][3] -1.3562 _refine.aniso_B[1][2] -1.9032 _refine.aniso_B[1][3] 0.7312 _refine.aniso_B[2][3] 0.3666 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0.439 _refine.solvent_model_param_bsol 42.295 _refine.pdbx_solvent_vdw_probe_radii 0.80 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.47 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.10 _refine.pdbx_overall_phase_error 15.14 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 488 _refine_hist.pdbx_number_atoms_ligand 237 _refine_hist.number_atoms_solvent 197 _refine_hist.number_atoms_total 922 _refine_hist.d_res_high 0.920 _refine_hist.d_res_low 23.330 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id f_bond_d 0.011 ? ? 1050 ? 'X-RAY DIFFRACTION' f_angle_d 1.620 ? ? 1572 ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 34.206 ? ? 338 ? 'X-RAY DIFFRACTION' f_chiral_restr 0.074 ? ? 134 ? 'X-RAY DIFFRACTION' f_plane_restr 0.017 ? ? 59 ? 'X-RAY DIFFRACTION' # loop_ _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id . 0.9200 0.9305 1572 0.2866 45.00 0.3264 . . 88 . . . . 'X-RAY DIFFRACTION' . 0.9305 0.9414 2133 0.2697 60.00 0.2910 . . 116 . . . . 'X-RAY DIFFRACTION' . 0.9414 0.9529 2743 0.2642 75.00 0.2969 . . 143 . . . . 'X-RAY DIFFRACTION' . 0.9529 0.9650 2817 0.2504 80.00 0.2756 . . 149 . . . . 'X-RAY DIFFRACTION' . 0.9650 0.9777 2890 0.2157 81.00 0.2312 . . 142 . . . . 'X-RAY DIFFRACTION' . 0.9777 0.9911 2956 0.2046 82.00 0.2629 . . 157 . . . . 'X-RAY DIFFRACTION' . 0.9911 1.0052 2834 0.1955 80.00 0.2218 . . 146 . . . . 'X-RAY DIFFRACTION' . 1.0052 1.0202 2788 0.1824 81.00 0.2175 . . 156 . . . . 'X-RAY DIFFRACTION' . 1.0202 1.0362 2910 0.1802 78.00 0.1964 . . 131 . . . . 'X-RAY DIFFRACTION' . 1.0362 1.0532 2721 0.1664 79.00 0.1948 . . 156 . . . . 'X-RAY DIFFRACTION' . 1.0532 1.0713 3082 0.1530 85.00 0.1820 . . 156 . . . . 'X-RAY DIFFRACTION' . 1.0713 1.0908 3040 0.1470 85.00 0.1612 . . 156 . . . . 'X-RAY DIFFRACTION' . 1.0908 1.1118 3029 0.1409 87.00 0.1522 . . 173 . . . . 'X-RAY DIFFRACTION' . 1.1118 1.1345 3079 0.1354 85.00 0.1746 . . 165 . . . . 'X-RAY DIFFRACTION' . 1.1345 1.1592 2952 0.1297 84.00 0.1443 . . 192 . . . . 'X-RAY DIFFRACTION' . 1.1592 1.1861 2895 0.1253 82.00 0.1507 . . 174 . . . . 'X-RAY DIFFRACTION' . 1.1861 1.2158 2681 0.1234 76.00 0.1398 . . 150 . . . . 'X-RAY DIFFRACTION' . 1.2158 1.2487 3184 0.1196 88.00 0.1276 . . 170 . . . . 'X-RAY DIFFRACTION' . 1.2487 1.2854 3076 0.1141 87.00 0.1467 . . 157 . . . . 'X-RAY DIFFRACTION' . 1.2854 1.3269 3108 0.1062 88.00 0.1195 . . 204 . . . . 'X-RAY DIFFRACTION' . 1.3269 1.3743 3142 0.1073 88.00 0.1321 . . 167 . . . . 'X-RAY DIFFRACTION' . 1.3743 1.4293 3130 0.1073 87.00 0.1351 . . 153 . . . . 'X-RAY DIFFRACTION' . 1.4293 1.4944 2856 0.1042 81.00 0.1324 . . 190 . . . . 'X-RAY DIFFRACTION' . 1.4944 1.5731 3048 0.1150 85.00 0.1286 . . 145 . . . . 'X-RAY DIFFRACTION' . 1.5731 1.6717 3226 0.1197 90.00 0.1122 . . 172 . . . . 'X-RAY DIFFRACTION' . 1.6717 1.8007 3103 0.1237 88.00 0.1357 . . 171 . . . . 'X-RAY DIFFRACTION' . 1.8007 1.9818 3153 0.1319 87.00 0.1502 . . 122 . . . . 'X-RAY DIFFRACTION' . 1.9818 2.2684 2904 0.1390 81.00 0.1521 . . 142 . . . . 'X-RAY DIFFRACTION' . 2.2684 2.8571 3157 0.1604 90.00 0.1553 . . 197 . . . . 'X-RAY DIFFRACTION' . 2.8571 23.3378 3110 0.1524 86.00 0.1494 . . 155 . . . . 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 4E1U _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 4E1U _struct.title '[Ru(bpy)2 dppz]2+ bound to DNA' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4E1U _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'Mismatch, Small molecule, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 3 ? I N N 3 ? J N N 4 ? K N N 4 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 4E1U _struct_ref.pdbx_db_accession 4E1U _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code CGGAAATTACCG _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4E1U A 1 ? 12 ? 4E1U 1 ? 12 ? 1 12 2 1 4E1U B 1 ? 12 ? 4E1U 1 ? 12 ? 1 12 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 1070 ? 1 MORE -5 ? 1 'SSA (A^2)' 5510 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A DG 2 O6 ? ? ? 1_555 H BA . BA ? ? A DG 2 A BA 106 1_555 ? ? ? ? ? ? ? 2.934 ? ? metalc2 metalc ? ? A DG 3 O6 A ? ? 1_555 H BA . BA ? ? A DG 3 A BA 106 1_555 ? ? ? ? ? ? ? 2.780 ? ? metalc3 metalc ? ? A DG 3 O6 B ? ? 1_555 H BA . BA ? ? A DG 3 A BA 106 1_555 ? ? ? ? ? ? ? 3.203 ? ? metalc4 metalc ? ? H BA . BA ? ? ? 1_555 J HOH . O ? ? A BA 106 A HOH 209 1_555 ? ? ? ? ? ? ? 3.118 ? ? metalc5 metalc ? ? H BA . BA ? ? ? 1_555 J HOH . O ? ? A BA 106 A HOH 244 1_555 ? ? ? ? ? ? ? 2.669 ? ? metalc6 metalc ? ? H BA . BA ? ? ? 1_555 K HOH . O ? ? A BA 106 B HOH 1085 1_555 ? ? ? ? ? ? ? 3.020 ? ? metalc7 metalc ? ? H BA . BA ? ? ? 1_555 K HOH . O ? ? A BA 106 B HOH 1102 1_555 ? ? ? ? ? ? ? 2.811 ? ? metalc8 metalc ? ? B DG 2 O6 B ? ? 1_555 I BA . BA ? ? B DG 2 B BA 101 1_555 ? ? ? ? ? ? ? 2.976 ? ? metalc9 metalc ? ? B DG 2 O6 A ? ? 1_555 I BA . BA ? ? B DG 2 B BA 101 1_555 ? ? ? ? ? ? ? 3.123 ? ? metalc10 metalc ? ? I BA . BA ? ? ? 1_555 K HOH . O ? ? B BA 101 B HOH 1004 1_555 ? ? ? ? ? ? ? 2.904 ? ? metalc11 metalc ? ? I BA . BA ? ? ? 1_555 K HOH . O ? ? B BA 101 B HOH 1024 1_555 ? ? ? ? ? ? ? 2.542 ? ? metalc12 metalc ? ? I BA . BA ? ? ? 1_555 K HOH . O ? ? B BA 101 B HOH 1033 1_555 ? ? ? ? ? ? ? 3.129 ? ? hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 12 N1 ? ? A DC 1 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 12 O6 ? ? A DC 1 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 12 N2 ? ? A DC 1 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 N2 ? ? ? 1_555 A DA 4 N1 A ? A DG 2 A DA 4 1_555 ? ? ? ? ? ? 'DG-DA MISPAIR' ? ? ? hydrog5 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 11 N3 ? ? A DG 2 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 11 O2 ? ? A DG 2 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 11 N4 ? ? A DG 2 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DG 3 N2 A ? ? 1_555 A DA 4 N1 A ? A DG 3 A DA 4 1_555 ? ? ? ? ? ? 'DG-DA MISPAIR' ? ? ? hydrog9 hydrog ? ? A DG 3 N1 A ? ? 1_555 B DC 10 N3 ? ? A DG 3 B DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 3 N2 A ? ? 1_555 B DC 10 O2 ? ? A DG 3 B DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 3 O6 A ? ? 1_555 B DC 10 N4 ? ? A DG 3 B DC 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DA 4 N6 A ? ? 1_555 B DC 11 O2 ? ? A DA 4 B DC 11 1_555 ? ? ? ? ? ? 'DA-DC MISPAIR' ? ? ? hydrog13 hydrog ? ? A DA 5 N1 A ? ? 1_555 B DT 8 N3 ? ? A DA 5 B DT 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DA 5 N6 A ? ? 1_555 B DT 8 O4 ? ? A DA 5 B DT 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DA 6 N1 A ? ? 1_555 B DT 7 N3 A ? A DA 6 B DT 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DA 6 N6 A ? ? 1_555 B DT 7 O4 A ? A DA 6 B DT 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DA 6 N3 A ? ? 1_555 B DA 9 N6 ? ? A DA 6 B DA 9 1_555 ? ? ? ? ? ? 'DA-DA MISPAIR' ? ? ? hydrog18 hydrog ? ? A DT 7 N3 A ? ? 1_555 B DA 6 N1 ? ? A DT 7 B DA 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DT 7 O4 A ? ? 1_555 B DA 6 N6 ? ? A DT 7 B DA 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DT 8 N3 ? ? ? 1_555 B DA 5 N1 A ? A DT 8 B DA 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DT 8 O4 ? ? ? 1_555 B DA 5 N6 A ? A DT 8 B DA 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DA 9 N6 ? ? ? 1_555 B DA 6 N3 ? ? A DA 9 B DA 6 1_555 ? ? ? ? ? ? 'DA-DA MISPAIR' ? ? ? hydrog23 hydrog ? ? A DC 10 N3 ? ? ? 1_555 B DG 3 N1 A ? A DC 10 B DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DC 10 N4 ? ? ? 1_555 B DG 3 O6 A ? A DC 10 B DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DC 10 O2 ? ? ? 1_555 B DG 3 N2 A ? A DC 10 B DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DC 11 N3 ? ? ? 1_555 B DG 2 N1 A ? A DC 11 B DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DC 11 N4 ? ? ? 1_555 B DG 2 O6 A ? A DC 11 B DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DC 11 O2 ? ? ? 1_555 B DG 2 N2 A ? A DC 11 B DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DC 11 O2 ? ? ? 1_555 B DA 4 N6 ? ? A DC 11 B DA 4 1_555 ? ? ? ? ? ? 'DC-DA MISPAIR' ? ? ? hydrog30 hydrog ? ? B DG 2 N2 A ? ? 1_555 B DA 4 N1 ? ? B DG 2 B DA 4 1_555 ? ? ? ? ? ? 'DG-DA MISPAIR' ? ? ? hydrog31 hydrog ? ? B DG 3 N2 A ? ? 1_555 B DA 4 N1 ? ? B DG 3 B DA 4 1_555 ? ? ? ? ? ? 'DG-DA MISPAIR' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O6 ? A DG 2 ? A DG 2 ? 1_555 BA ? H BA . ? A BA 106 ? 1_555 O6 A A DG 3 ? A DG 3 ? 1_555 69.2 ? 2 O6 ? A DG 2 ? A DG 2 ? 1_555 BA ? H BA . ? A BA 106 ? 1_555 O6 B A DG 3 ? A DG 3 ? 1_555 71.1 ? 3 O6 A A DG 3 ? A DG 3 ? 1_555 BA ? H BA . ? A BA 106 ? 1_555 O6 B A DG 3 ? A DG 3 ? 1_555 3.8 ? 4 O6 ? A DG 2 ? A DG 2 ? 1_555 BA ? H BA . ? A BA 106 ? 1_555 O ? J HOH . ? A HOH 209 ? 1_555 120.6 ? 5 O6 A A DG 3 ? A DG 3 ? 1_555 BA ? H BA . ? A BA 106 ? 1_555 O ? J HOH . ? A HOH 209 ? 1_555 74.5 ? 6 O6 B A DG 3 ? A DG 3 ? 1_555 BA ? H BA . ? A BA 106 ? 1_555 O ? J HOH . ? A HOH 209 ? 1_555 75.7 ? 7 O6 ? A DG 2 ? A DG 2 ? 1_555 BA ? H BA . ? A BA 106 ? 1_555 O ? J HOH . ? A HOH 244 ? 1_555 72.9 ? 8 O6 A A DG 3 ? A DG 3 ? 1_555 BA ? H BA . ? A BA 106 ? 1_555 O ? J HOH . ? A HOH 244 ? 1_555 101.5 ? 9 O6 B A DG 3 ? A DG 3 ? 1_555 BA ? H BA . ? A BA 106 ? 1_555 O ? J HOH . ? A HOH 244 ? 1_555 99.2 ? 10 O ? J HOH . ? A HOH 209 ? 1_555 BA ? H BA . ? A BA 106 ? 1_555 O ? J HOH . ? A HOH 244 ? 1_555 161.5 ? 11 O6 ? A DG 2 ? A DG 2 ? 1_555 BA ? H BA . ? A BA 106 ? 1_555 O ? K HOH . ? B HOH 1085 ? 1_555 146.9 ? 12 O6 A A DG 3 ? A DG 3 ? 1_555 BA ? H BA . ? A BA 106 ? 1_555 O ? K HOH . ? B HOH 1085 ? 1_555 133.1 ? 13 O6 B A DG 3 ? A DG 3 ? 1_555 BA ? H BA . ? A BA 106 ? 1_555 O ? K HOH . ? B HOH 1085 ? 1_555 129.9 ? 14 O ? J HOH . ? A HOH 209 ? 1_555 BA ? H BA . ? A BA 106 ? 1_555 O ? K HOH . ? B HOH 1085 ? 1_555 91.5 ? 15 O ? J HOH . ? A HOH 244 ? 1_555 BA ? H BA . ? A BA 106 ? 1_555 O ? K HOH . ? B HOH 1085 ? 1_555 78.0 ? 16 O6 ? A DG 2 ? A DG 2 ? 1_555 BA ? H BA . ? A BA 106 ? 1_555 O ? K HOH . ? B HOH 1102 ? 1_555 119.0 ? 17 O6 A A DG 3 ? A DG 3 ? 1_555 BA ? H BA . ? A BA 106 ? 1_555 O ? K HOH . ? B HOH 1102 ? 1_555 69.0 ? 18 O6 B A DG 3 ? A DG 3 ? 1_555 BA ? H BA . ? A BA 106 ? 1_555 O ? K HOH . ? B HOH 1102 ? 1_555 65.3 ? 19 O ? J HOH . ? A HOH 209 ? 1_555 BA ? H BA . ? A BA 106 ? 1_555 O ? K HOH . ? B HOH 1102 ? 1_555 87.6 ? 20 O ? J HOH . ? A HOH 244 ? 1_555 BA ? H BA . ? A BA 106 ? 1_555 O ? K HOH . ? B HOH 1102 ? 1_555 74.2 ? 21 O ? K HOH . ? B HOH 1085 ? 1_555 BA ? H BA . ? A BA 106 ? 1_555 O ? K HOH . ? B HOH 1102 ? 1_555 65.9 ? 22 O6 B B DG 2 ? B DG 2 ? 1_555 BA ? I BA . ? B BA 101 ? 1_555 O6 A B DG 2 ? B DG 2 ? 1_555 8.1 ? 23 O6 B B DG 2 ? B DG 2 ? 1_555 BA ? I BA . ? B BA 101 ? 1_555 O ? K HOH . ? B HOH 1004 ? 1_555 61.5 ? 24 O6 A B DG 2 ? B DG 2 ? 1_555 BA ? I BA . ? B BA 101 ? 1_555 O ? K HOH . ? B HOH 1004 ? 1_555 69.2 ? 25 O6 B B DG 2 ? B DG 2 ? 1_555 BA ? I BA . ? B BA 101 ? 1_555 O ? K HOH . ? B HOH 1024 ? 1_555 75.6 ? 26 O6 A B DG 2 ? B DG 2 ? 1_555 BA ? I BA . ? B BA 101 ? 1_555 O ? K HOH . ? B HOH 1024 ? 1_555 79.1 ? 27 O ? K HOH . ? B HOH 1004 ? 1_555 BA ? I BA . ? B BA 101 ? 1_555 O ? K HOH . ? B HOH 1024 ? 1_555 79.1 ? 28 O6 B B DG 2 ? B DG 2 ? 1_555 BA ? I BA . ? B BA 101 ? 1_555 O ? K HOH . ? B HOH 1033 ? 1_555 117.1 ? 29 O6 A B DG 2 ? B DG 2 ? 1_555 BA ? I BA . ? B BA 101 ? 1_555 O ? K HOH . ? B HOH 1033 ? 1_555 119.0 ? 30 O ? K HOH . ? B HOH 1004 ? 1_555 BA ? I BA . ? B BA 101 ? 1_555 O ? K HOH . ? B HOH 1033 ? 1_555 76.7 ? 31 O ? K HOH . ? B HOH 1024 ? 1_555 BA ? I BA . ? B BA 101 ? 1_555 O ? K HOH . ? B HOH 1033 ? 1_555 141.0 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A R1Z 103 ? 9 'BINDING SITE FOR RESIDUE R1Z A 103' AC2 Software A R1Z 102 ? 10 'BINDING SITE FOR RESIDUE R1Z A 102' AC3 Software A R1Z 101 ? 13 'BINDING SITE FOR RESIDUE R1Z A 101' AC4 Software A BA 106 ? 6 'BINDING SITE FOR RESIDUE BA A 106' AC5 Software A R1Z 105 ? 10 'BINDING SITE FOR RESIDUE R1Z A 105' AC6 Software A R1Z 104 ? 9 'BINDING SITE FOR RESIDUE R1Z A 104' AC7 Software B BA 101 ? 6 'BINDING SITE FOR RESIDUE BA B 101' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 9 DA A 6 ? DA A 6 . ? 1_555 ? 2 AC1 9 DT A 7 ? DT A 7 . ? 1_555 ? 3 AC1 9 DT A 8 ? DT A 8 . ? 1_555 ? 4 AC1 9 DA A 9 ? DA A 9 . ? 1_555 ? 5 AC1 9 DG B 3 ? DG B 3 . ? 1_545 ? 6 AC1 9 DA B 6 ? DA B 6 . ? 1_555 ? 7 AC1 9 DT B 7 ? DT B 7 . ? 1_555 ? 8 AC1 9 DT B 8 ? DT B 8 . ? 1_555 ? 9 AC1 9 DA B 9 ? DA B 9 . ? 1_555 ? 10 AC2 10 DC A 1 ? DC A 1 . ? 1_655 ? 11 AC2 10 DG A 3 ? DG A 3 . ? 1_555 ? 12 AC2 10 DA A 4 ? DA A 4 . ? 1_555 ? 13 AC2 10 DA A 5 ? DA A 5 . ? 1_555 ? 14 AC2 10 DA A 6 ? DA A 6 . ? 1_555 ? 15 AC2 10 DG A 12 ? DG A 12 . ? 1_546 ? 16 AC2 10 DT B 8 ? DT B 8 . ? 1_555 ? 17 AC2 10 DA B 9 ? DA B 9 . ? 1_555 ? 18 AC2 10 DC B 10 ? DC B 10 . ? 1_555 ? 19 AC2 10 DC B 11 ? DC B 11 . ? 1_555 ? 20 AC3 13 DC A 1 ? DC A 1 . ? 1_555 ? 21 AC3 13 DG A 2 ? DG A 2 . ? 1_555 ? 22 AC3 13 DG A 3 ? DG A 3 . ? 1_555 ? 23 AC3 13 DA A 4 ? DA A 4 . ? 1_555 ? 24 AC3 13 DC A 10 ? DC A 10 . ? 1_456 ? 25 AC3 13 DG A 12 ? DG A 12 . ? 1_446 ? 26 AC3 13 R1Z G . ? R1Z A 105 . ? 1_446 ? 27 AC3 13 HOH J . ? HOH A 217 . ? 1_456 ? 28 AC3 13 HOH J . ? HOH A 224 . ? 1_555 ? 29 AC3 13 HOH J . ? HOH A 246 . ? 1_456 ? 30 AC3 13 DC B 1 ? DC B 1 . ? 1_446 ? 31 AC3 13 DC B 11 ? DC B 11 . ? 1_555 ? 32 AC3 13 DG B 12 ? DG B 12 . ? 1_555 ? 33 AC4 6 DG A 2 ? DG A 2 . ? 1_555 ? 34 AC4 6 DG A 3 ? DG A 3 . ? 1_555 ? 35 AC4 6 DG A 12 ? DG A 12 . ? 1_446 ? 36 AC4 6 HOH J . ? HOH A 244 . ? 1_555 ? 37 AC4 6 HOH K . ? HOH B 1085 . ? 1_555 ? 38 AC4 6 HOH K . ? HOH B 1102 . ? 1_555 ? 39 AC5 10 DC A 1 ? DC A 1 . ? 1_664 ? 40 AC5 10 DA A 9 ? DA A 9 . ? 1_565 ? 41 AC5 10 DC A 10 ? DC A 10 . ? 1_565 ? 42 AC5 10 DC A 11 ? DC A 11 . ? 1_555 ? 43 AC5 10 R1Z C . ? R1Z A 101 . ? 1_664 ? 44 AC5 10 DG B 2 ? DG B 2 . ? 1_555 ? 45 AC5 10 DG B 3 ? DG B 3 . ? 1_555 ? 46 AC5 10 DA B 4 ? DA B 4 . ? 1_555 ? 47 AC5 10 DG B 12 ? DG B 12 . ? 1_664 ? 48 AC5 10 HOH K . ? HOH B 1004 . ? 1_555 ? 49 AC6 9 DT A 8 ? DT A 8 . ? 1_555 ? 50 AC6 9 DA A 9 ? DA A 9 . ? 1_555 ? 51 AC6 9 DC A 10 ? DC A 10 . ? 1_555 ? 52 AC6 9 DC A 11 ? DC A 11 . ? 1_555 ? 53 AC6 9 DG B 3 ? DG B 3 . ? 1_555 ? 54 AC6 9 DA B 4 ? DA B 4 . ? 1_555 ? 55 AC6 9 DA B 5 ? DA B 5 . ? 1_555 ? 56 AC6 9 DA B 6 ? DA B 6 . ? 1_555 ? 57 AC6 9 DG B 12 ? DG B 12 . ? 1_564 ? 58 AC7 6 DG B 2 ? DG B 2 . ? 1_555 ? 59 AC7 6 HOH K . ? HOH B 1004 . ? 1_555 ? 60 AC7 6 HOH K . ? HOH B 1007 . ? 1_655 ? 61 AC7 6 HOH K . ? HOH B 1024 . ? 1_555 ? 62 AC7 6 HOH K . ? HOH B 1054 . ? 1_555 ? 63 AC7 6 HOH K . ? HOH B 1083 . ? 1_655 ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A HOH 267 ? ? O B HOH 1103 ? ? 1.84 2 1 O B HOH 1083 ? ? O B HOH 1084 ? ? 1.88 3 1 O B HOH 1077 ? ? O B HOH 1079 ? ? 1.89 4 1 O B HOH 1071 ? ? O B HOH 1108 ? ? 1.91 5 1 O A HOH 240 ? ? O A HOH 274 ? ? 1.94 6 1 OP2 A DG 12 ? B O A HOH 271 ? ? 1.94 7 1 O B HOH 1022 ? ? O B HOH 1111 ? ? 1.95 8 1 O A HOH 247 ? ? O A HOH 264 ? ? 1.96 9 1 O A HOH 249 ? ? O B HOH 1009 ? ? 1.99 10 1 O B HOH 1104 ? ? O B HOH 1110 ? ? 1.99 11 1 O A HOH 238 ? ? O A HOH 241 ? ? 2.10 12 1 O B HOH 1066 ? ? O B HOH 1069 ? ? 2.10 13 1 O B HOH 1087 ? ? O B HOH 1096 ? ? 2.11 14 1 O A HOH 217 ? ? O A HOH 246 ? ? 2.12 15 1 O B HOH 1067 ? ? O B HOH 1071 ? ? 2.12 16 1 O B HOH 1029 ? ? O B HOH 1092 ? ? 2.14 17 1 O B HOH 1038 ? ? O B HOH 1066 ? ? 2.14 18 1 OP1 A DT 7 ? B O A HOH 242 ? ? 2.16 19 1 O A HOH 236 ? ? O B HOH 1046 ? ? 2.17 20 1 OP2 A DG 12 ? A O A HOH 271 ? ? 2.19 21 1 O B HOH 1068 ? ? O B HOH 1098 ? ? 2.19 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 O A HOH 270 ? ? 1_555 O B HOH 1078 ? ? 1_655 1.07 2 1 O A HOH 254 ? ? 1_555 O B HOH 1055 ? ? 1_545 1.30 3 1 O A HOH 268 ? ? 1_555 O B HOH 1079 ? ? 1_664 1.79 4 1 O A HOH 249 ? ? 1_555 O B HOH 1111 ? ? 1_545 1.94 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "O3'" A DC 11 ? ? P A DG 12 ? A 1.776 1.607 0.169 0.012 Y 2 1 "O3'" A DC 11 ? ? P A DG 12 ? B 1.788 1.607 0.181 0.012 Y # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 110.45 108.30 2.15 0.30 N 2 1 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? N9 A DG 2 ? ? 110.35 108.30 2.05 0.30 N 3 1 "O4'" A DG 3 ? A "C1'" A DG 3 ? A N9 A DG 3 ? A 112.89 108.30 4.59 0.30 N 4 1 "O4'" A DA 5 ? B "C1'" A DA 5 ? B N9 A DA 5 ? B 116.72 108.30 8.42 0.30 N 5 1 "O4'" A DA 6 ? A "C1'" A DA 6 ? A N9 A DA 6 ? A 110.56 108.30 2.26 0.30 N 6 1 "C3'" A DC 10 ? ? "C2'" A DC 10 ? ? "C1'" A DC 10 ? ? 97.38 102.40 -5.02 0.80 N 7 1 "O4'" A DG 12 ? A "C1'" A DG 12 ? A N9 A DG 12 ? A 110.45 108.30 2.15 0.30 N 8 1 "O4'" A DG 12 ? B "C1'" A DG 12 ? B N9 A DG 12 ? B 110.24 108.30 1.94 0.30 N 9 1 "O4'" B DG 3 ? A "C1'" B DG 3 ? A N9 B DG 3 ? A 116.47 108.30 8.17 0.30 N 10 1 "O4'" B DG 3 ? B "C1'" B DG 3 ? B N9 B DG 3 ? B 111.11 108.30 2.81 0.30 N 11 1 "O4'" B DA 4 ? ? "C1'" B DA 4 ? ? N9 B DA 4 ? ? 103.54 108.00 -4.46 0.70 N 12 1 "O4'" B DA 6 ? ? "C1'" B DA 6 ? ? N9 B DA 6 ? ? 111.71 108.30 3.41 0.30 N 13 1 "O4'" B DC 10 ? ? "C1'" B DC 10 ? ? N1 B DC 10 ? ? 111.33 108.30 3.03 0.30 N # loop_ _pdbx_validate_polymer_linkage.id _pdbx_validate_polymer_linkage.PDB_model_num _pdbx_validate_polymer_linkage.auth_atom_id_1 _pdbx_validate_polymer_linkage.auth_asym_id_1 _pdbx_validate_polymer_linkage.auth_comp_id_1 _pdbx_validate_polymer_linkage.auth_seq_id_1 _pdbx_validate_polymer_linkage.PDB_ins_code_1 _pdbx_validate_polymer_linkage.label_alt_id_1 _pdbx_validate_polymer_linkage.auth_atom_id_2 _pdbx_validate_polymer_linkage.auth_asym_id_2 _pdbx_validate_polymer_linkage.auth_comp_id_2 _pdbx_validate_polymer_linkage.auth_seq_id_2 _pdbx_validate_polymer_linkage.PDB_ins_code_2 _pdbx_validate_polymer_linkage.label_alt_id_2 _pdbx_validate_polymer_linkage.dist 1 1 "O3'" A DC 11 ? ? P A DG 12 ? A 1.78 2 1 "O3'" A DC 11 ? ? P A DG 12 ? B 1.79 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal BA BA BA N N 1 DA OP3 O N N 2 DA P P N N 3 DA OP1 O N N 4 DA OP2 O N N 5 DA "O5'" O N N 6 DA "C5'" C N N 7 DA "C4'" C N R 8 DA "O4'" O N N 9 DA "C3'" C N S 10 DA "O3'" O N N 11 DA "C2'" C N N 12 DA "C1'" C N R 13 DA N9 N Y N 14 DA C8 C Y N 15 DA N7 N Y N 16 DA C5 C Y N 17 DA C6 C Y N 18 DA N6 N N N 19 DA N1 N Y N 20 DA C2 C Y N 21 DA N3 N Y N 22 DA C4 C Y N 23 DA HOP3 H N N 24 DA HOP2 H N N 25 DA "H5'" H N N 26 DA "H5''" H N N 27 DA "H4'" H N N 28 DA "H3'" H N N 29 DA "HO3'" H N N 30 DA "H2'" H N N 31 DA "H2''" H N N 32 DA "H1'" H N N 33 DA H8 H N N 34 DA H61 H N N 35 DA H62 H N N 36 DA H2 H N N 37 DC OP3 O N N 38 DC P P N N 39 DC OP1 O N N 40 DC OP2 O N N 41 DC "O5'" O N N 42 DC "C5'" C N N 43 DC "C4'" C N R 44 DC "O4'" O N N 45 DC "C3'" C N S 46 DC "O3'" O N N 47 DC "C2'" C N N 48 DC "C1'" C N R 49 DC N1 N N N 50 DC C2 C N N 51 DC O2 O N N 52 DC N3 N N N 53 DC C4 C N N 54 DC N4 N N N 55 DC C5 C N N 56 DC C6 C N N 57 DC HOP3 H N N 58 DC HOP2 H N N 59 DC "H5'" H N N 60 DC "H5''" H N N 61 DC "H4'" H N N 62 DC "H3'" H N N 63 DC "HO3'" H N N 64 DC "H2'" H N N 65 DC "H2''" H N N 66 DC "H1'" H N N 67 DC H41 H N N 68 DC H42 H N N 69 DC H5 H N N 70 DC H6 H N N 71 DG OP3 O N N 72 DG P P N N 73 DG OP1 O N N 74 DG OP2 O N N 75 DG "O5'" O N N 76 DG "C5'" C N N 77 DG "C4'" C N R 78 DG "O4'" O N N 79 DG "C3'" C N S 80 DG "O3'" O N N 81 DG "C2'" C N N 82 DG "C1'" C N R 83 DG N9 N Y N 84 DG C8 C Y N 85 DG N7 N Y N 86 DG C5 C Y N 87 DG C6 C N N 88 DG O6 O N N 89 DG N1 N N N 90 DG C2 C N N 91 DG N2 N N N 92 DG N3 N N N 93 DG C4 C Y N 94 DG HOP3 H N N 95 DG HOP2 H N N 96 DG "H5'" H N N 97 DG "H5''" H N N 98 DG "H4'" H N N 99 DG "H3'" H N N 100 DG "HO3'" H N N 101 DG "H2'" H N N 102 DG "H2''" H N N 103 DG "H1'" H N N 104 DG H8 H N N 105 DG H1 H N N 106 DG H21 H N N 107 DG H22 H N N 108 DT OP3 O N N 109 DT P P N N 110 DT OP1 O N N 111 DT OP2 O N N 112 DT "O5'" O N N 113 DT "C5'" C N N 114 DT "C4'" C N R 115 DT "O4'" O N N 116 DT "C3'" C N S 117 DT "O3'" O N N 118 DT "C2'" C N N 119 DT "C1'" C N R 120 DT N1 N N N 121 DT C2 C N N 122 DT O2 O N N 123 DT N3 N N N 124 DT C4 C N N 125 DT O4 O N N 126 DT C5 C N N 127 DT C7 C N N 128 DT C6 C N N 129 DT HOP3 H N N 130 DT HOP2 H N N 131 DT "H5'" H N N 132 DT "H5''" H N N 133 DT "H4'" H N N 134 DT "H3'" H N N 135 DT "HO3'" H N N 136 DT "H2'" H N N 137 DT "H2''" H N N 138 DT "H1'" H N N 139 DT H3 H N N 140 DT H71 H N N 141 DT H72 H N N 142 DT H73 H N N 143 DT H6 H N N 144 HOH O O N N 145 HOH H1 H N N 146 HOH H2 H N N 147 R1Z RU1 RU N N 148 R1Z N7 N Y N 149 R1Z C29 C Y N 150 R1Z C30 C Y N 151 R1Z C31 C Y N 152 R1Z C32 C Y N 153 R1Z C33 C Y N 154 R1Z C34 C Y N 155 R1Z N8 N Y N 156 R1Z C38 C Y N 157 R1Z C37 C Y N 158 R1Z C36 C Y N 159 R1Z C35 C Y N 160 R1Z N6 N Y N 161 R1Z C28 C Y N 162 R1Z C27 C Y N 163 R1Z C26 C Y N 164 R1Z C25 C Y N 165 R1Z C24 C Y N 166 R1Z C23 C Y N 167 R1Z N5 N Y N 168 R1Z C19 C Y N 169 R1Z C20 C Y N 170 R1Z C21 C Y N 171 R1Z C22 C Y N 172 R1Z C10 C Y N 173 R1Z C11 C Y N 174 R1Z N4 N Y N 175 R1Z C12 C Y N 176 R1Z C1 C Y N 177 R1Z C13 C Y N 178 R1Z C14 C Y N 179 R1Z C15 C Y N 180 R1Z N1 N Y N 181 R1Z C2 C Y N 182 R1Z C3 C Y N 183 R1Z C9 C Y N 184 R1Z C8 C Y N 185 R1Z C7 C Y N 186 R1Z C6 C Y N 187 R1Z N3 N Y N 188 R1Z C5 C Y N 189 R1Z C4 C Y N 190 R1Z C18 C Y N 191 R1Z C17 C Y N 192 R1Z C16 C Y N 193 R1Z N2 N Y N 194 R1Z H291 H N N 195 R1Z H301 H N N 196 R1Z H311 H N N 197 R1Z H321 H N N 198 R1Z H381 H N N 199 R1Z H371 H N N 200 R1Z H361 H N N 201 R1Z H351 H N N 202 R1Z H281 H N N 203 R1Z H271 H N N 204 R1Z H261 H N N 205 R1Z H251 H N N 206 R1Z H191 H N N 207 R1Z H201 H N N 208 R1Z H211 H N N 209 R1Z H221 H N N 210 R1Z H101 H N N 211 R1Z H131 H N N 212 R1Z H141 H N N 213 R1Z H151 H N N 214 R1Z H91 H N N 215 R1Z H81 H N N 216 R1Z H71 H N N 217 R1Z H181 H N N 218 R1Z H171 H N N 219 R1Z H161 H N N 220 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 DT OP3 P sing N N 113 DT OP3 HOP3 sing N N 114 DT P OP1 doub N N 115 DT P OP2 sing N N 116 DT P "O5'" sing N N 117 DT OP2 HOP2 sing N N 118 DT "O5'" "C5'" sing N N 119 DT "C5'" "C4'" sing N N 120 DT "C5'" "H5'" sing N N 121 DT "C5'" "H5''" sing N N 122 DT "C4'" "O4'" sing N N 123 DT "C4'" "C3'" sing N N 124 DT "C4'" "H4'" sing N N 125 DT "O4'" "C1'" sing N N 126 DT "C3'" "O3'" sing N N 127 DT "C3'" "C2'" sing N N 128 DT "C3'" "H3'" sing N N 129 DT "O3'" "HO3'" sing N N 130 DT "C2'" "C1'" sing N N 131 DT "C2'" "H2'" sing N N 132 DT "C2'" "H2''" sing N N 133 DT "C1'" N1 sing N N 134 DT "C1'" "H1'" sing N N 135 DT N1 C2 sing N N 136 DT N1 C6 sing N N 137 DT C2 O2 doub N N 138 DT C2 N3 sing N N 139 DT N3 C4 sing N N 140 DT N3 H3 sing N N 141 DT C4 O4 doub N N 142 DT C4 C5 sing N N 143 DT C5 C7 sing N N 144 DT C5 C6 doub N N 145 DT C7 H71 sing N N 146 DT C7 H72 sing N N 147 DT C7 H73 sing N N 148 DT C6 H6 sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 R1Z C21 C22 doub Y N 152 R1Z C21 C20 sing Y N 153 R1Z C22 C23 sing Y N 154 R1Z C25 C26 doub Y N 155 R1Z C25 C24 sing Y N 156 R1Z C26 C27 sing Y N 157 R1Z C20 C19 doub Y N 158 R1Z C23 C24 sing N N 159 R1Z C23 N5 doub Y N 160 R1Z C24 N6 doub Y N 161 R1Z C27 C28 doub Y N 162 R1Z C19 N5 sing Y N 163 R1Z N5 RU1 sing N N 164 R1Z N6 C28 sing Y N 165 R1Z N6 RU1 sing N N 166 R1Z C14 C15 doub Y N 167 R1Z C14 C13 sing Y N 168 R1Z C15 N1 sing Y N 169 R1Z C13 C1 doub Y N 170 R1Z N1 RU1 sing N N 171 R1Z N1 C2 doub Y N 172 R1Z RU1 N8 sing N N 173 R1Z RU1 N2 sing N N 174 R1Z RU1 N7 sing N N 175 R1Z C1 C2 sing Y N 176 R1Z C1 C12 sing Y N 177 R1Z C38 N8 doub Y N 178 R1Z C38 C37 sing Y N 179 R1Z C2 C3 sing Y N 180 R1Z N8 C34 sing Y N 181 R1Z N4 C12 doub Y N 182 R1Z N4 C11 sing Y N 183 R1Z C37 C36 doub Y N 184 R1Z C12 C5 sing Y N 185 R1Z C3 N2 doub Y N 186 R1Z C3 C4 sing Y N 187 R1Z N2 C16 sing Y N 188 R1Z C10 C11 doub Y N 189 R1Z C10 C9 sing Y N 190 R1Z C11 C6 sing Y N 191 R1Z N7 C29 doub Y N 192 R1Z N7 C33 sing Y N 193 R1Z C5 C4 sing Y N 194 R1Z C5 N3 doub Y N 195 R1Z C34 C33 sing N N 196 R1Z C34 C35 doub Y N 197 R1Z C36 C35 sing Y N 198 R1Z C4 C18 doub Y N 199 R1Z C29 C30 sing Y N 200 R1Z C16 C17 doub Y N 201 R1Z C9 C8 doub Y N 202 R1Z C33 C32 doub Y N 203 R1Z C6 N3 sing Y N 204 R1Z C6 C7 doub Y N 205 R1Z C18 C17 sing Y N 206 R1Z C8 C7 sing Y N 207 R1Z C30 C31 doub Y N 208 R1Z C32 C31 sing Y N 209 R1Z C29 H291 sing N N 210 R1Z C30 H301 sing N N 211 R1Z C31 H311 sing N N 212 R1Z C32 H321 sing N N 213 R1Z C38 H381 sing N N 214 R1Z C37 H371 sing N N 215 R1Z C36 H361 sing N N 216 R1Z C35 H351 sing N N 217 R1Z C28 H281 sing N N 218 R1Z C27 H271 sing N N 219 R1Z C26 H261 sing N N 220 R1Z C25 H251 sing N N 221 R1Z C19 H191 sing N N 222 R1Z C20 H201 sing N N 223 R1Z C21 H211 sing N N 224 R1Z C22 H221 sing N N 225 R1Z C10 H101 sing N N 226 R1Z C13 H131 sing N N 227 R1Z C14 H141 sing N N 228 R1Z C15 H151 sing N N 229 R1Z C9 H91 sing N N 230 R1Z C8 H81 sing N N 231 R1Z C7 H71 sing N N 232 R1Z C18 H181 sing N N 233 R1Z C17 H171 sing N N 234 R1Z C16 H161 sing N N 235 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 4E1U 'double helix' 4E1U 'b-form double helix' 4E1U 'bulge loop' 4E1U 'mismatched base pair' 4E1U 'triple helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 12 1_555 0.173 -0.178 -0.368 0.604 20.169 -1.072 1 A_DC1:DG12_B A 1 ? B 12 ? 19 1 1 A DG 2 1_555 B DC 11 1_555 -0.239 -0.155 -0.372 -8.060 3.170 -0.589 2 A_DG2:DC11_B A 2 ? B 11 ? 19 1 1 A DG 3 1_555 B DC 10 1_555 -0.187 -0.199 -0.230 14.888 19.558 -2.356 3 A_DG3:DC10_B A 3 ? B 10 ? 19 1 1 A DA 5 1_555 B DT 8 1_555 0.206 -0.027 -0.658 -7.113 27.953 7.705 4 A_DA5:DT8_B A 5 ? B 8 ? 20 1 1 A DA 6 1_555 B DT 7 1_555 0.048 -0.027 -0.014 21.530 10.392 -2.231 5 A_DA6:DT7_B A 6 ? B 7 ? 20 1 1 A DT 7 1_555 B DA 6 1_555 -0.146 -0.160 -0.017 -17.974 9.147 -0.674 6 A_DT7:DA6_B A 7 ? B 6 ? 20 1 1 A DT 8 1_555 B DA 5 1_555 -0.049 -0.114 -0.148 15.827 13.563 9.814 7 A_DT8:DA5_B A 8 ? B 5 ? 20 1 1 A DC 10 1_555 B DG 3 1_555 0.295 -0.185 0.053 -16.585 23.716 -1.540 8 A_DC10:DG3_B A 10 ? B 3 ? 19 1 1 A DC 11 1_555 B DG 2 1_555 0.233 -0.117 -0.160 6.354 10.028 -0.311 9 A_DC11:DG2_B A 11 ? B 2 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 12 1_555 A DG 2 1_555 B DC 11 1_555 0.122 2.161 6.285 12.499 5.535 18.134 1.427 8.883 5.628 15.084 -34.065 22.674 1 AA_DC1DG2:DC11DG12_BB A 1 ? B 12 ? A 2 ? B 11 ? 1 A DG 2 1_555 B DC 11 1_555 A DG 3 1_555 B DC 10 1_555 0.905 0.263 2.919 -2.978 -5.366 30.412 1.394 -2.193 2.734 -10.099 5.605 31.011 2 AA_DG2DG3:DC10DC11_BB A 2 ? B 11 ? A 3 ? B 10 ? 1 A DA 5 1_555 B DT 8 1_555 A DA 6 1_555 B DT 7 1_555 -0.776 -0.144 3.016 -0.733 -0.690 23.183 -0.137 1.694 3.042 -1.716 1.822 23.204 3 AA_DA5DA6:DT7DT8_BB A 5 ? B 8 ? A 6 ? B 7 ? 1 A DA 6 1_555 B DT 7 1_555 A DT 7 1_555 B DA 6 1_555 -0.182 0.635 7.113 -1.653 7.604 23.490 -3.628 -0.686 6.966 18.053 3.924 24.728 4 AA_DA6DT7:DA6DT7_BB A 6 ? B 7 ? A 7 ? B 6 ? 1 A DT 7 1_555 B DA 6 1_555 A DT 8 1_555 B DA 5 1_555 0.417 -0.346 2.805 -3.413 6.582 23.548 -2.490 -1.848 2.531 15.639 8.109 24.672 5 AA_DT7DT8:DA5DA6_BB A 7 ? B 6 ? A 8 ? B 5 ? 1 A DC 10 1_555 B DG 3 1_555 A DC 11 1_555 B DG 2 1_555 -0.995 -0.261 2.999 3.234 -7.451 23.425 1.446 3.211 2.787 -17.685 -7.677 24.774 6 AA_DC10DC11:DG2DG3_BB A 10 ? B 3 ? A 11 ? B 2 ? # _atom_sites.entry_id 4E1U _atom_sites.fract_transf_matrix[1][1] 0.041599 _atom_sites.fract_transf_matrix[1][2] -0.010210 _atom_sites.fract_transf_matrix[1][3] -0.001566 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.041524 _atom_sites.fract_transf_matrix[2][3] -0.010701 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.027653 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol BA C H N O P RU # loop_