data_4E22 # _entry.id 4E22 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4E22 RCSB RCSB071070 WWPDB D_1000071070 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4E22 _pdbx_database_status.recvd_initial_deposition_date 2012-03-07 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Clark, E.A.' 1 'Acharya, K.R.' 2 # _citation.id primary _citation.title ;Structure and function of cytidine monophosphate kinase from Yersinia pseudotuberculosis, essential for virulence but not for survival. ; _citation.journal_abbrev 'Open Biol' _citation.journal_volume 2 _citation.page_first 120142 _citation.page_last 120142 _citation.year 2012 _citation.journal_id_ASTM ? _citation.country UK _citation.journal_id_ISSN 2046-2441 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 23271832 _citation.pdbx_database_id_DOI 10.1098/rsob.120142 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Walker, N.J.' 1 primary 'Clark, E.A.' 2 primary 'Ford, D.C.' 3 primary 'Bullifent, H.L.' 4 primary 'McAlister, E.V.' 5 primary 'Duffield, M.L.' 6 primary 'Acharya, K.R.' 7 primary 'Oyston, P.C.' 8 # _cell.entry_id 4E22 _cell.length_a 88.635 _cell.length_b 88.635 _cell.length_c 84.285 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4E22 _symmetry.space_group_name_H-M 'H 3' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Cytidylate kinase' 27685.611 1 2.7.4.25 ? ? ? 2 non-polymer syn 'SULFATE ION' 96.063 2 ? ? ? ? 3 water nat water 18.015 18 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'CK, Cytidine monophosphate kinase, CMP kinase' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;LEVLFQGPLGSPEFPGRLERPHMTAIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEE ALVPLAAHLDVRFVSQNGQLQVILEGEDVSNEIRTETVGNTASQAAAFPRVREALLRRQRAFREAPGLIADGRDMGTIVF PDAPVKIFLDASSQERAHRRMLQLQERGFNVNFERLLAEIQERDNRDRNRSVAPLVPAADALVLDSTSMSIEQVIEQALA YAQRILALPLKK ; _entity_poly.pdbx_seq_one_letter_code_can ;LEVLFQGPLGSPEFPGRLERPHMTAIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEE ALVPLAAHLDVRFVSQNGQLQVILEGEDVSNEIRTETVGNTASQAAAFPRVREALLRRQRAFREAPGLIADGRDMGTIVF PDAPVKIFLDASSQERAHRRMLQLQERGFNVNFERLLAEIQERDNRDRNRSVAPLVPAADALVLDSTSMSIEQVIEQALA YAQRILALPLKK ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 LEU n 1 2 GLU n 1 3 VAL n 1 4 LEU n 1 5 PHE n 1 6 GLN n 1 7 GLY n 1 8 PRO n 1 9 LEU n 1 10 GLY n 1 11 SER n 1 12 PRO n 1 13 GLU n 1 14 PHE n 1 15 PRO n 1 16 GLY n 1 17 ARG n 1 18 LEU n 1 19 GLU n 1 20 ARG n 1 21 PRO n 1 22 HIS n 1 23 MET n 1 24 THR n 1 25 ALA n 1 26 ILE n 1 27 ALA n 1 28 PRO n 1 29 VAL n 1 30 ILE n 1 31 THR n 1 32 VAL n 1 33 ASP n 1 34 GLY n 1 35 PRO n 1 36 SER n 1 37 GLY n 1 38 ALA n 1 39 GLY n 1 40 LYS n 1 41 GLY n 1 42 THR n 1 43 LEU n 1 44 CYS n 1 45 LYS n 1 46 ALA n 1 47 LEU n 1 48 ALA n 1 49 GLU n 1 50 SER n 1 51 LEU n 1 52 ASN n 1 53 TRP n 1 54 ARG n 1 55 LEU n 1 56 LEU n 1 57 ASP n 1 58 SER n 1 59 GLY n 1 60 ALA n 1 61 ILE n 1 62 TYR n 1 63 ARG n 1 64 VAL n 1 65 LEU n 1 66 ALA n 1 67 LEU n 1 68 ALA n 1 69 ALA n 1 70 LEU n 1 71 HIS n 1 72 HIS n 1 73 GLN n 1 74 VAL n 1 75 ASP n 1 76 ILE n 1 77 SER n 1 78 THR n 1 79 GLU n 1 80 GLU n 1 81 ALA n 1 82 LEU n 1 83 VAL n 1 84 PRO n 1 85 LEU n 1 86 ALA n 1 87 ALA n 1 88 HIS n 1 89 LEU n 1 90 ASP n 1 91 VAL n 1 92 ARG n 1 93 PHE n 1 94 VAL n 1 95 SER n 1 96 GLN n 1 97 ASN n 1 98 GLY n 1 99 GLN n 1 100 LEU n 1 101 GLN n 1 102 VAL n 1 103 ILE n 1 104 LEU n 1 105 GLU n 1 106 GLY n 1 107 GLU n 1 108 ASP n 1 109 VAL n 1 110 SER n 1 111 ASN n 1 112 GLU n 1 113 ILE n 1 114 ARG n 1 115 THR n 1 116 GLU n 1 117 THR n 1 118 VAL n 1 119 GLY n 1 120 ASN n 1 121 THR n 1 122 ALA n 1 123 SER n 1 124 GLN n 1 125 ALA n 1 126 ALA n 1 127 ALA n 1 128 PHE n 1 129 PRO n 1 130 ARG n 1 131 VAL n 1 132 ARG n 1 133 GLU n 1 134 ALA n 1 135 LEU n 1 136 LEU n 1 137 ARG n 1 138 ARG n 1 139 GLN n 1 140 ARG n 1 141 ALA n 1 142 PHE n 1 143 ARG n 1 144 GLU n 1 145 ALA n 1 146 PRO n 1 147 GLY n 1 148 LEU n 1 149 ILE n 1 150 ALA n 1 151 ASP n 1 152 GLY n 1 153 ARG n 1 154 ASP n 1 155 MET n 1 156 GLY n 1 157 THR n 1 158 ILE n 1 159 VAL n 1 160 PHE n 1 161 PRO n 1 162 ASP n 1 163 ALA n 1 164 PRO n 1 165 VAL n 1 166 LYS n 1 167 ILE n 1 168 PHE n 1 169 LEU n 1 170 ASP n 1 171 ALA n 1 172 SER n 1 173 SER n 1 174 GLN n 1 175 GLU n 1 176 ARG n 1 177 ALA n 1 178 HIS n 1 179 ARG n 1 180 ARG n 1 181 MET n 1 182 LEU n 1 183 GLN n 1 184 LEU n 1 185 GLN n 1 186 GLU n 1 187 ARG n 1 188 GLY n 1 189 PHE n 1 190 ASN n 1 191 VAL n 1 192 ASN n 1 193 PHE n 1 194 GLU n 1 195 ARG n 1 196 LEU n 1 197 LEU n 1 198 ALA n 1 199 GLU n 1 200 ILE n 1 201 GLN n 1 202 GLU n 1 203 ARG n 1 204 ASP n 1 205 ASN n 1 206 ARG n 1 207 ASP n 1 208 ARG n 1 209 ASN n 1 210 ARG n 1 211 SER n 1 212 VAL n 1 213 ALA n 1 214 PRO n 1 215 LEU n 1 216 VAL n 1 217 PRO n 1 218 ALA n 1 219 ALA n 1 220 ASP n 1 221 ALA n 1 222 LEU n 1 223 VAL n 1 224 LEU n 1 225 ASP n 1 226 SER n 1 227 THR n 1 228 SER n 1 229 MET n 1 230 SER n 1 231 ILE n 1 232 GLU n 1 233 GLN n 1 234 VAL n 1 235 ILE n 1 236 GLU n 1 237 GLN n 1 238 ALA n 1 239 LEU n 1 240 ALA n 1 241 TYR n 1 242 ALA n 1 243 GLN n 1 244 ARG n 1 245 ILE n 1 246 LEU n 1 247 ALA n 1 248 LEU n 1 249 PRO n 1 250 LEU n 1 251 LYS n 1 252 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'cmk, YPK_2669' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain YPIII _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Yersinia pseudotuberculosis' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 502800 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code KCY_YERPY _struct_ref.pdbx_db_accession B1JRD8 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MTAIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQNGQLQV ILEGEDVSNEIRTETVGNTASQAAAFPRVREALLRRQRAFREAPGLIADGRDMGTIVFPDAPVKIFLDASSQERAHRRML QLQERGFNVNFERLLAEIQERDNRDRNRSVAPLVPAADALVLDSTSMSIEQVIEQALAYAQRILALPLKK ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4E22 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 23 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 252 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession B1JRD8 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 230 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 230 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4E22 LEU A 1 ? UNP B1JRD8 ? ? 'EXPRESSION TAG' -21 1 1 4E22 GLU A 2 ? UNP B1JRD8 ? ? 'EXPRESSION TAG' -20 2 1 4E22 VAL A 3 ? UNP B1JRD8 ? ? 'EXPRESSION TAG' -19 3 1 4E22 LEU A 4 ? UNP B1JRD8 ? ? 'EXPRESSION TAG' -18 4 1 4E22 PHE A 5 ? UNP B1JRD8 ? ? 'EXPRESSION TAG' -17 5 1 4E22 GLN A 6 ? UNP B1JRD8 ? ? 'EXPRESSION TAG' -16 6 1 4E22 GLY A 7 ? UNP B1JRD8 ? ? 'EXPRESSION TAG' -15 7 1 4E22 PRO A 8 ? UNP B1JRD8 ? ? 'EXPRESSION TAG' -14 8 1 4E22 LEU A 9 ? UNP B1JRD8 ? ? 'EXPRESSION TAG' -13 9 1 4E22 GLY A 10 ? UNP B1JRD8 ? ? 'EXPRESSION TAG' -12 10 1 4E22 SER A 11 ? UNP B1JRD8 ? ? 'EXPRESSION TAG' -11 11 1 4E22 PRO A 12 ? UNP B1JRD8 ? ? 'EXPRESSION TAG' -10 12 1 4E22 GLU A 13 ? UNP B1JRD8 ? ? 'EXPRESSION TAG' -9 13 1 4E22 PHE A 14 ? UNP B1JRD8 ? ? 'EXPRESSION TAG' -8 14 1 4E22 PRO A 15 ? UNP B1JRD8 ? ? 'EXPRESSION TAG' -7 15 1 4E22 GLY A 16 ? UNP B1JRD8 ? ? 'EXPRESSION TAG' -6 16 1 4E22 ARG A 17 ? UNP B1JRD8 ? ? 'EXPRESSION TAG' -5 17 1 4E22 LEU A 18 ? UNP B1JRD8 ? ? 'EXPRESSION TAG' -4 18 1 4E22 GLU A 19 ? UNP B1JRD8 ? ? 'EXPRESSION TAG' -3 19 1 4E22 ARG A 20 ? UNP B1JRD8 ? ? 'EXPRESSION TAG' -2 20 1 4E22 PRO A 21 ? UNP B1JRD8 ? ? 'EXPRESSION TAG' -1 21 1 4E22 HIS A 22 ? UNP B1JRD8 ? ? 'EXPRESSION TAG' 0 22 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4E22 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.30 _exptl_crystal.density_percent_sol 46.55 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 289 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_details ;1 ul of 6 mg/ml Cmk (in 50 mM MES pH 6.0, 150 mM sodium chloride) plus 1 ul mother liquor (100 mM sodium HEPES pH 7.5, 1.2 M lithium sulfate, 100 mM magnesium chloride), VAPOR DIFFUSION, HANGING DROP, temperature 289K ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2011-04-15 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'double crystal Si(III)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.98 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'DIAMOND BEAMLINE I02' _diffrn_source.pdbx_synchrotron_site Diamond _diffrn_source.pdbx_synchrotron_beamline I02 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.98 # _reflns.entry_id 4E22 _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 27.43 _reflns.d_resolution_high 2.32 _reflns.number_obs 10266 _reflns.number_all ? _reflns.percent_possible_obs ? _reflns.pdbx_Rmerge_I_obs 0.047 _reflns.pdbx_netI_over_sigmaI 16.2 _reflns.B_iso_Wilson_estimate 61.6 _reflns.pdbx_redundancy 4.3 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _refine.entry_id 4E22 _refine.ls_number_reflns_obs 10266 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.97 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 27.43 _refine.ls_d_res_high 2.323 _refine.ls_percent_reflns_obs 96.31 _refine.ls_R_factor_obs 0.2245 _refine.ls_R_factor_R_work 0.2218 _refine.ls_R_factor_R_free 0.2782 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.83 _refine.ls_number_reflns_R_free 495 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] 4.1751 _refine.aniso_B[2][2] 4.1751 _refine.aniso_B[3][3] -8.3502 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] -0.0000 _refine.aniso_B[2][3] 0.0000 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0.378 _refine.solvent_model_param_bsol 53.479 _refine.pdbx_solvent_vdw_probe_radii 0.90 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.60 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.55 _refine.pdbx_overall_phase_error 30.88 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.ls_R_factor_all ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1627 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 10 _refine_hist.number_atoms_solvent 18 _refine_hist.number_atoms_total 1655 _refine_hist.d_res_high 2.323 _refine_hist.d_res_low 27.43 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id f_bond_d 0.008 ? ? 1657 ? 'X-RAY DIFFRACTION' f_angle_d 1.168 ? ? 2248 ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 16.998 ? ? 612 ? 'X-RAY DIFFRACTION' f_chiral_restr 0.076 ? ? 266 ? 'X-RAY DIFFRACTION' f_plane_restr 0.004 ? ? 295 ? 'X-RAY DIFFRACTION' # loop_ _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id . 2.323 2.5564 2334 0.2976 92.00 0.3720 . . 121 . . . . 'X-RAY DIFFRACTION' . 2.5564 2.9260 2544 0.2850 100.00 0.3229 . . 118 . . . . 'X-RAY DIFFRACTION' . 2.9260 3.6850 2519 0.2293 100.00 0.3054 . . 122 . . . . 'X-RAY DIFFRACTION' . 3.6850 27.43 2362 0.1941 93.00 0.2439 . . 134 . . . . 'X-RAY DIFFRACTION' # _struct.entry_id 4E22 _struct.title 'Structure of cytidine monophosphate kinase from Yersinia pseudotuberculosis' _struct.pdbx_descriptor 'Cytidylate kinase (E.C.2.7.4.25)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4E22 _struct_keywords.pdbx_keywords TRANSFERASE _struct_keywords.text 'P-loop, CMP/ATP binding, TRANSFERASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 39 ? LEU A 51 ? GLY A 17 LEU A 29 1 ? 13 HELX_P HELX_P2 2 SER A 58 ? HIS A 72 ? SER A 36 HIS A 50 1 ? 15 HELX_P HELX_P3 3 ALA A 81 ? HIS A 88 ? ALA A 59 HIS A 66 1 ? 8 HELX_P HELX_P4 4 ASN A 111 ? ARG A 114 ? ASN A 89 ARG A 92 5 ? 4 HELX_P HELX_P5 5 THR A 115 ? ALA A 126 ? THR A 93 ALA A 104 1 ? 12 HELX_P HELX_P6 6 PHE A 128 ? ALA A 141 ? PHE A 106 ALA A 119 1 ? 14 HELX_P HELX_P7 7 SER A 172 ? GLY A 188 ? SER A 150 GLY A 166 1 ? 17 HELX_P HELX_P8 8 ASN A 192 ? GLN A 201 ? ASN A 170 GLN A 179 1 ? 10 HELX_P HELX_P9 9 SER A 230 ? LEU A 246 ? SER A 208 LEU A 224 1 ? 17 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id ALA _struct_mon_prot_cis.label_seq_id 145 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id ALA _struct_mon_prot_cis.auth_seq_id 123 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 146 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 124 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 3.51 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ARG A 54 ? ASP A 57 ? ARG A 32 ASP A 35 A 2 LEU A 148 ? GLY A 152 ? LEU A 126 GLY A 130 A 3 VAL A 29 ? ASP A 33 ? VAL A 7 ASP A 11 A 4 VAL A 165 ? ASP A 170 ? VAL A 143 ASP A 148 A 5 ALA A 221 ? ASP A 225 ? ALA A 199 ASP A 203 B 1 VAL A 91 ? GLN A 96 ? VAL A 69 GLN A 74 B 2 GLN A 99 ? LEU A 104 ? GLN A 77 LEU A 82 B 3 GLU A 107 ? ASP A 108 ? GLU A 85 ASP A 86 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N LEU A 56 ? N LEU A 34 O ILE A 149 ? O ILE A 127 A 2 3 O ALA A 150 ? O ALA A 128 N ILE A 30 ? N ILE A 8 A 3 4 N ASP A 33 ? N ASP A 11 O LEU A 169 ? O LEU A 147 A 4 5 N PHE A 168 ? N PHE A 146 O LEU A 222 ? O LEU A 200 B 1 2 N VAL A 94 ? N VAL A 72 O GLN A 101 ? O GLN A 79 B 2 3 N LEU A 104 ? N LEU A 82 O GLU A 107 ? O GLU A 85 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE SO4 A 301' AC2 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE SO4 A 302' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 GLY A 37 ? GLY A 15 . ? 1_555 ? 2 AC1 6 ALA A 38 ? ALA A 16 . ? 1_555 ? 3 AC1 6 GLY A 39 ? GLY A 17 . ? 1_555 ? 4 AC1 6 LYS A 40 ? LYS A 18 . ? 1_555 ? 5 AC1 6 GLY A 41 ? GLY A 19 . ? 1_555 ? 6 AC1 6 ARG A 179 ? ARG A 157 . ? 1_555 ? 7 AC2 2 GLY A 59 ? GLY A 37 . ? 1_555 ? 8 AC2 2 ARG A 63 ? ARG A 41 . ? 1_555 ? # _database_PDB_matrix.entry_id 4E22 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4E22 _atom_sites.fract_transf_matrix[1][1] 0.011282 _atom_sites.fract_transf_matrix[1][2] 0.006514 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.013028 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.011865 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 LEU 1 -21 ? ? ? A . n A 1 2 GLU 2 -20 ? ? ? A . n A 1 3 VAL 3 -19 ? ? ? A . n A 1 4 LEU 4 -18 ? ? ? A . n A 1 5 PHE 5 -17 ? ? ? A . n A 1 6 GLN 6 -16 ? ? ? A . n A 1 7 GLY 7 -15 ? ? ? A . n A 1 8 PRO 8 -14 ? ? ? A . n A 1 9 LEU 9 -13 ? ? ? A . n A 1 10 GLY 10 -12 ? ? ? A . n A 1 11 SER 11 -11 ? ? ? A . n A 1 12 PRO 12 -10 ? ? ? A . n A 1 13 GLU 13 -9 ? ? ? A . n A 1 14 PHE 14 -8 ? ? ? A . n A 1 15 PRO 15 -7 ? ? ? A . n A 1 16 GLY 16 -6 ? ? ? A . n A 1 17 ARG 17 -5 ? ? ? A . n A 1 18 LEU 18 -4 ? ? ? A . n A 1 19 GLU 19 -3 ? ? ? A . n A 1 20 ARG 20 -2 ? ? ? A . n A 1 21 PRO 21 -1 ? ? ? A . n A 1 22 HIS 22 0 ? ? ? A . n A 1 23 MET 23 1 1 MET MET A . n A 1 24 THR 24 2 2 THR THR A . n A 1 25 ALA 25 3 3 ALA ALA A . n A 1 26 ILE 26 4 4 ILE ILE A . n A 1 27 ALA 27 5 5 ALA ALA A . n A 1 28 PRO 28 6 6 PRO PRO A . n A 1 29 VAL 29 7 7 VAL VAL A . n A 1 30 ILE 30 8 8 ILE ILE A . n A 1 31 THR 31 9 9 THR THR A . n A 1 32 VAL 32 10 10 VAL VAL A . n A 1 33 ASP 33 11 11 ASP ASP A . n A 1 34 GLY 34 12 12 GLY GLY A . n A 1 35 PRO 35 13 13 PRO PRO A . n A 1 36 SER 36 14 14 SER SER A . n A 1 37 GLY 37 15 15 GLY GLY A . n A 1 38 ALA 38 16 16 ALA ALA A . n A 1 39 GLY 39 17 17 GLY GLY A . n A 1 40 LYS 40 18 18 LYS LYS A . n A 1 41 GLY 41 19 19 GLY GLY A . n A 1 42 THR 42 20 20 THR THR A . n A 1 43 LEU 43 21 21 LEU LEU A . n A 1 44 CYS 44 22 22 CYS CYS A . n A 1 45 LYS 45 23 23 LYS LYS A . n A 1 46 ALA 46 24 24 ALA ALA A . n A 1 47 LEU 47 25 25 LEU LEU A . n A 1 48 ALA 48 26 26 ALA ALA A . n A 1 49 GLU 49 27 27 GLU GLU A . n A 1 50 SER 50 28 28 SER SER A . n A 1 51 LEU 51 29 29 LEU LEU A . n A 1 52 ASN 52 30 30 ASN ASN A . n A 1 53 TRP 53 31 31 TRP TRP A . n A 1 54 ARG 54 32 32 ARG ARG A . n A 1 55 LEU 55 33 33 LEU LEU A . n A 1 56 LEU 56 34 34 LEU LEU A . n A 1 57 ASP 57 35 35 ASP ASP A . n A 1 58 SER 58 36 36 SER SER A . n A 1 59 GLY 59 37 37 GLY GLY A . n A 1 60 ALA 60 38 38 ALA ALA A . n A 1 61 ILE 61 39 39 ILE ILE A . n A 1 62 TYR 62 40 40 TYR TYR A . n A 1 63 ARG 63 41 41 ARG ARG A . n A 1 64 VAL 64 42 42 VAL VAL A . n A 1 65 LEU 65 43 43 LEU LEU A . n A 1 66 ALA 66 44 44 ALA ALA A . n A 1 67 LEU 67 45 45 LEU LEU A . n A 1 68 ALA 68 46 46 ALA ALA A . n A 1 69 ALA 69 47 47 ALA ALA A . n A 1 70 LEU 70 48 48 LEU LEU A . n A 1 71 HIS 71 49 49 HIS HIS A . n A 1 72 HIS 72 50 50 HIS HIS A . n A 1 73 GLN 73 51 51 GLN GLN A . n A 1 74 VAL 74 52 52 VAL VAL A . n A 1 75 ASP 75 53 53 ASP ASP A . n A 1 76 ILE 76 54 54 ILE ILE A . n A 1 77 SER 77 55 55 SER SER A . n A 1 78 THR 78 56 56 THR THR A . n A 1 79 GLU 79 57 57 GLU GLU A . n A 1 80 GLU 80 58 58 GLU GLU A . n A 1 81 ALA 81 59 59 ALA ALA A . n A 1 82 LEU 82 60 60 LEU LEU A . n A 1 83 VAL 83 61 61 VAL VAL A . n A 1 84 PRO 84 62 62 PRO PRO A . n A 1 85 LEU 85 63 63 LEU LEU A . n A 1 86 ALA 86 64 64 ALA ALA A . n A 1 87 ALA 87 65 65 ALA ALA A . n A 1 88 HIS 88 66 66 HIS HIS A . n A 1 89 LEU 89 67 67 LEU LEU A . n A 1 90 ASP 90 68 68 ASP ASP A . n A 1 91 VAL 91 69 69 VAL VAL A . n A 1 92 ARG 92 70 70 ARG ARG A . n A 1 93 PHE 93 71 71 PHE PHE A . n A 1 94 VAL 94 72 72 VAL VAL A . n A 1 95 SER 95 73 73 SER SER A . n A 1 96 GLN 96 74 74 GLN GLN A . n A 1 97 ASN 97 75 75 ASN ASN A . n A 1 98 GLY 98 76 76 GLY GLY A . n A 1 99 GLN 99 77 77 GLN GLN A . n A 1 100 LEU 100 78 78 LEU LEU A . n A 1 101 GLN 101 79 79 GLN GLN A . n A 1 102 VAL 102 80 80 VAL VAL A . n A 1 103 ILE 103 81 81 ILE ILE A . n A 1 104 LEU 104 82 82 LEU LEU A . n A 1 105 GLU 105 83 83 GLU GLU A . n A 1 106 GLY 106 84 84 GLY GLY A . n A 1 107 GLU 107 85 85 GLU GLU A . n A 1 108 ASP 108 86 86 ASP ASP A . n A 1 109 VAL 109 87 87 VAL VAL A . n A 1 110 SER 110 88 88 SER SER A . n A 1 111 ASN 111 89 89 ASN ASN A . n A 1 112 GLU 112 90 90 GLU GLU A . n A 1 113 ILE 113 91 91 ILE ILE A . n A 1 114 ARG 114 92 92 ARG ARG A . n A 1 115 THR 115 93 93 THR THR A . n A 1 116 GLU 116 94 94 GLU GLU A . n A 1 117 THR 117 95 95 THR THR A . n A 1 118 VAL 118 96 96 VAL VAL A . n A 1 119 GLY 119 97 97 GLY GLY A . n A 1 120 ASN 120 98 98 ASN ASN A . n A 1 121 THR 121 99 99 THR THR A . n A 1 122 ALA 122 100 100 ALA ALA A . n A 1 123 SER 123 101 101 SER SER A . n A 1 124 GLN 124 102 102 GLN GLN A . n A 1 125 ALA 125 103 103 ALA ALA A . n A 1 126 ALA 126 104 104 ALA ALA A . n A 1 127 ALA 127 105 105 ALA ALA A . n A 1 128 PHE 128 106 106 PHE PHE A . n A 1 129 PRO 129 107 107 PRO PRO A . n A 1 130 ARG 130 108 108 ARG ARG A . n A 1 131 VAL 131 109 109 VAL VAL A . n A 1 132 ARG 132 110 110 ARG ARG A . n A 1 133 GLU 133 111 111 GLU GLU A . n A 1 134 ALA 134 112 112 ALA ALA A . n A 1 135 LEU 135 113 113 LEU LEU A . n A 1 136 LEU 136 114 114 LEU LEU A . n A 1 137 ARG 137 115 115 ARG ARG A . n A 1 138 ARG 138 116 116 ARG ARG A . n A 1 139 GLN 139 117 117 GLN GLN A . n A 1 140 ARG 140 118 118 ARG ARG A . n A 1 141 ALA 141 119 119 ALA ALA A . n A 1 142 PHE 142 120 120 PHE PHE A . n A 1 143 ARG 143 121 121 ARG ARG A . n A 1 144 GLU 144 122 122 GLU GLU A . n A 1 145 ALA 145 123 123 ALA ALA A . n A 1 146 PRO 146 124 124 PRO PRO A . n A 1 147 GLY 147 125 125 GLY GLY A . n A 1 148 LEU 148 126 126 LEU LEU A . n A 1 149 ILE 149 127 127 ILE ILE A . n A 1 150 ALA 150 128 128 ALA ALA A . n A 1 151 ASP 151 129 129 ASP ASP A . n A 1 152 GLY 152 130 130 GLY GLY A . n A 1 153 ARG 153 131 131 ARG ARG A . n A 1 154 ASP 154 132 132 ASP ASP A . n A 1 155 MET 155 133 133 MET MET A . n A 1 156 GLY 156 134 134 GLY GLY A . n A 1 157 THR 157 135 135 THR THR A . n A 1 158 ILE 158 136 136 ILE ILE A . n A 1 159 VAL 159 137 137 VAL VAL A . n A 1 160 PHE 160 138 138 PHE PHE A . n A 1 161 PRO 161 139 139 PRO PRO A . n A 1 162 ASP 162 140 140 ASP ASP A . n A 1 163 ALA 163 141 141 ALA ALA A . n A 1 164 PRO 164 142 142 PRO PRO A . n A 1 165 VAL 165 143 143 VAL VAL A . n A 1 166 LYS 166 144 144 LYS LYS A . n A 1 167 ILE 167 145 145 ILE ILE A . n A 1 168 PHE 168 146 146 PHE PHE A . n A 1 169 LEU 169 147 147 LEU LEU A . n A 1 170 ASP 170 148 148 ASP ASP A . n A 1 171 ALA 171 149 149 ALA ALA A . n A 1 172 SER 172 150 150 SER SER A . n A 1 173 SER 173 151 151 SER SER A . n A 1 174 GLN 174 152 152 GLN GLN A . n A 1 175 GLU 175 153 153 GLU GLU A . n A 1 176 ARG 176 154 154 ARG ARG A . n A 1 177 ALA 177 155 155 ALA ALA A . n A 1 178 HIS 178 156 156 HIS HIS A . n A 1 179 ARG 179 157 157 ARG ARG A . n A 1 180 ARG 180 158 158 ARG ARG A . n A 1 181 MET 181 159 159 MET MET A . n A 1 182 LEU 182 160 160 LEU LEU A . n A 1 183 GLN 183 161 161 GLN GLN A . n A 1 184 LEU 184 162 162 LEU LEU A . n A 1 185 GLN 185 163 163 GLN GLN A . n A 1 186 GLU 186 164 164 GLU GLU A . n A 1 187 ARG 187 165 165 ARG ARG A . n A 1 188 GLY 188 166 166 GLY GLY A . n A 1 189 PHE 189 167 167 PHE PHE A . n A 1 190 ASN 190 168 168 ASN ASN A . n A 1 191 VAL 191 169 169 VAL VAL A . n A 1 192 ASN 192 170 170 ASN ASN A . n A 1 193 PHE 193 171 171 PHE PHE A . n A 1 194 GLU 194 172 172 GLU GLU A . n A 1 195 ARG 195 173 173 ARG ARG A . n A 1 196 LEU 196 174 174 LEU LEU A . n A 1 197 LEU 197 175 175 LEU LEU A . n A 1 198 ALA 198 176 176 ALA ALA A . n A 1 199 GLU 199 177 177 GLU GLU A . n A 1 200 ILE 200 178 178 ILE ILE A . n A 1 201 GLN 201 179 179 GLN GLN A . n A 1 202 GLU 202 180 ? ? ? A . n A 1 203 ARG 203 181 ? ? ? A . n A 1 204 ASP 204 182 ? ? ? A . n A 1 205 ASN 205 183 ? ? ? A . n A 1 206 ARG 206 184 ? ? ? A . n A 1 207 ASP 207 185 ? ? ? A . n A 1 208 ARG 208 186 ? ? ? A . n A 1 209 ASN 209 187 ? ? ? A . n A 1 210 ARG 210 188 ? ? ? A . n A 1 211 SER 211 189 ? ? ? A . n A 1 212 VAL 212 190 ? ? ? A . n A 1 213 ALA 213 191 ? ? ? A . n A 1 214 PRO 214 192 192 PRO PRO A . n A 1 215 LEU 215 193 193 LEU LEU A . n A 1 216 VAL 216 194 194 VAL VAL A . n A 1 217 PRO 217 195 195 PRO PRO A . n A 1 218 ALA 218 196 196 ALA ALA A . n A 1 219 ALA 219 197 197 ALA ALA A . n A 1 220 ASP 220 198 198 ASP ASP A . n A 1 221 ALA 221 199 199 ALA ALA A . n A 1 222 LEU 222 200 200 LEU LEU A . n A 1 223 VAL 223 201 201 VAL VAL A . n A 1 224 LEU 224 202 202 LEU LEU A . n A 1 225 ASP 225 203 203 ASP ASP A . n A 1 226 SER 226 204 204 SER SER A . n A 1 227 THR 227 205 205 THR THR A . n A 1 228 SER 228 206 206 SER SER A . n A 1 229 MET 229 207 207 MET MET A . n A 1 230 SER 230 208 208 SER SER A . n A 1 231 ILE 231 209 209 ILE ILE A . n A 1 232 GLU 232 210 210 GLU GLU A . n A 1 233 GLN 233 211 211 GLN GLN A . n A 1 234 VAL 234 212 212 VAL VAL A . n A 1 235 ILE 235 213 213 ILE ILE A . n A 1 236 GLU 236 214 214 GLU GLU A . n A 1 237 GLN 237 215 215 GLN GLN A . n A 1 238 ALA 238 216 216 ALA ALA A . n A 1 239 LEU 239 217 217 LEU LEU A . n A 1 240 ALA 240 218 218 ALA ALA A . n A 1 241 TYR 241 219 219 TYR TYR A . n A 1 242 ALA 242 220 220 ALA ALA A . n A 1 243 GLN 243 221 221 GLN GLN A . n A 1 244 ARG 244 222 222 ARG ARG A . n A 1 245 ILE 245 223 223 ILE ILE A . n A 1 246 LEU 246 224 224 LEU LEU A . n A 1 247 ALA 247 225 225 ALA ALA A . n A 1 248 LEU 248 226 ? ? ? A . n A 1 249 PRO 249 227 ? ? ? A . n A 1 250 LEU 250 228 ? ? ? A . n A 1 251 LYS 251 229 ? ? ? A . n A 1 252 LYS 252 230 ? ? ? A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-12-19 2 'Structure model' 1 1 2013-01-16 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal ADSC 'data collection' Quantum ? 1 PHASER phasing . ? 2 PHENIX refinement '(phenix.refine: 1.7.2_869)' ? 3 XDS 'data reduction' . ? 4 SCALA 'data scaling' . ? 5 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 NZ _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 LYS _pdbx_validate_close_contact.auth_seq_id_1 18 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 OD2 _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 ASP _pdbx_validate_close_contact.auth_seq_id_2 129 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.17 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ILE A 4 ? ? 93.34 -78.67 2 1 GLN A 51 ? ? 31.03 75.36 3 1 ILE A 54 ? ? -90.63 48.05 4 1 SER A 55 ? ? -127.68 -155.11 5 1 THR A 56 ? ? 48.13 -14.33 6 1 GLU A 57 ? ? 58.07 -15.06 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 0 A GLU 57 ? CB ? A GLU 79 CB 2 1 Y 0 A GLU 57 ? CG ? A GLU 79 CG 3 1 Y 0 A GLU 57 ? CD ? A GLU 79 CD 4 1 Y 0 A GLU 57 ? OE1 ? A GLU 79 OE1 5 1 Y 0 A GLU 57 ? OE2 ? A GLU 79 OE2 6 1 Y 0 A GLU 58 ? CB ? A GLU 80 CB 7 1 Y 0 A GLU 58 ? CG ? A GLU 80 CG 8 1 Y 0 A GLU 58 ? CD ? A GLU 80 CD 9 1 Y 0 A GLU 58 ? OE1 ? A GLU 80 OE1 10 1 Y 0 A GLU 58 ? OE2 ? A GLU 80 OE2 11 1 Y 0 A ARG 92 ? CB ? A ARG 114 CB 12 1 Y 0 A ARG 92 ? CG ? A ARG 114 CG 13 1 Y 0 A ARG 92 ? CD ? A ARG 114 CD 14 1 Y 0 A ARG 92 ? NE ? A ARG 114 NE 15 1 Y 0 A ARG 92 ? CZ ? A ARG 114 CZ 16 1 Y 0 A ARG 92 ? NH1 ? A ARG 114 NH1 17 1 Y 0 A ARG 92 ? NH2 ? A ARG 114 NH2 18 1 Y 0 A GLU 122 ? CB ? A GLU 144 CB 19 1 Y 0 A GLU 122 ? CG ? A GLU 144 CG 20 1 Y 0 A GLU 122 ? CD ? A GLU 144 CD 21 1 Y 0 A GLU 122 ? OE1 ? A GLU 144 OE1 22 1 Y 0 A GLU 122 ? OE2 ? A GLU 144 OE2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A LEU -21 ? A LEU 1 2 1 Y 1 A GLU -20 ? A GLU 2 3 1 Y 1 A VAL -19 ? A VAL 3 4 1 Y 1 A LEU -18 ? A LEU 4 5 1 Y 1 A PHE -17 ? A PHE 5 6 1 Y 1 A GLN -16 ? A GLN 6 7 1 Y 1 A GLY -15 ? A GLY 7 8 1 Y 1 A PRO -14 ? A PRO 8 9 1 Y 1 A LEU -13 ? A LEU 9 10 1 Y 1 A GLY -12 ? A GLY 10 11 1 Y 1 A SER -11 ? A SER 11 12 1 Y 1 A PRO -10 ? A PRO 12 13 1 Y 1 A GLU -9 ? A GLU 13 14 1 Y 1 A PHE -8 ? A PHE 14 15 1 Y 1 A PRO -7 ? A PRO 15 16 1 Y 1 A GLY -6 ? A GLY 16 17 1 Y 1 A ARG -5 ? A ARG 17 18 1 Y 1 A LEU -4 ? A LEU 18 19 1 Y 1 A GLU -3 ? A GLU 19 20 1 Y 1 A ARG -2 ? A ARG 20 21 1 Y 1 A PRO -1 ? A PRO 21 22 1 Y 1 A HIS 0 ? A HIS 22 23 1 Y 1 A GLU 180 ? A GLU 202 24 1 Y 1 A ARG 181 ? A ARG 203 25 1 Y 1 A ASP 182 ? A ASP 204 26 1 Y 1 A ASN 183 ? A ASN 205 27 1 Y 1 A ARG 184 ? A ARG 206 28 1 Y 1 A ASP 185 ? A ASP 207 29 1 Y 1 A ARG 186 ? A ARG 208 30 1 Y 1 A ASN 187 ? A ASN 209 31 1 Y 1 A ARG 188 ? A ARG 210 32 1 Y 1 A SER 189 ? A SER 211 33 1 Y 1 A VAL 190 ? A VAL 212 34 1 Y 1 A ALA 191 ? A ALA 213 35 1 Y 1 A LEU 226 ? A LEU 248 36 1 Y 1 A PRO 227 ? A PRO 249 37 1 Y 1 A LEU 228 ? A LEU 250 38 1 Y 1 A LYS 229 ? A LYS 251 39 1 Y 1 A LYS 230 ? A LYS 252 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SULFATE ION' SO4 3 water HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 1 301 1 SO4 SO4 A . C 2 SO4 1 302 2 SO4 SO4 A . D 3 HOH 1 401 1 HOH HOH A . D 3 HOH 2 402 2 HOH HOH A . D 3 HOH 3 403 4 HOH HOH A . D 3 HOH 4 404 5 HOH HOH A . D 3 HOH 5 405 6 HOH HOH A . D 3 HOH 6 406 8 HOH HOH A . D 3 HOH 7 407 9 HOH HOH A . D 3 HOH 8 408 10 HOH HOH A . D 3 HOH 9 409 12 HOH HOH A . D 3 HOH 10 410 14 HOH HOH A . D 3 HOH 11 411 16 HOH HOH A . D 3 HOH 12 412 17 HOH HOH A . D 3 HOH 13 413 18 HOH HOH A . D 3 HOH 14 414 20 HOH HOH A . D 3 HOH 15 415 21 HOH HOH A . D 3 HOH 16 416 23 HOH HOH A . D 3 HOH 17 417 24 HOH HOH A . D 3 HOH 18 418 25 HOH HOH A . #