HEADER LYASE 07-MAR-12 4E23 OBSLTE 27-JUN-12 4E23 4F10 TITLE ALGINATE LYASE A1-III H192A COMPLEXED WITH TETRASACCHARIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALGINATE LYASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 54-404; COMPND 5 EC: 4.2.2.3; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SPHINGOMONAS; SOURCE 3 ORGANISM_TAXID: 28214; SOURCE 4 STRAIN: A1; SOURCE 5 GENE: ALY; SOURCE 6 EXPRESSION_SYSTEM: BACILLUS SUBTILIS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 1423; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: 1423; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PISA412 KEYWDS ALPHA BARREL, POLYSACCHARIDE LYASE, ALIGINATE, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR B.MIKAMI,M.BAN,S.SUZUKI,H.-J.YOON,O.MIYAKE,M.YAMASAKI,K.OGURA, AUTHOR 2 Y.MARUYAMA,W.HASHIMOTO,K.MURATA REVDAT 2 27-JUN-12 4E23 1 OBSLTE REVDAT 1 11-APR-12 4E23 0 SPRSDE 11-APR-12 4E23 3EVL JRNL AUTH B.MIKAMI,M.BAN,S.SUZUKI,H.-J.YOON,O.MIYAKE,M.YAMASAKI, JRNL AUTH 2 K.OGURA,Y.MARUYAMA,W.HASHIMOTO,K.MURATA JRNL TITL INDUCED FIT MOTION OF A LID LOOP INVOLVING CATALYSIS OF JRNL TITL 2 ALGINATE LYASE A1 III JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.6.4_486) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.20 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 38167 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 1913 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.2076 - 5.2988 1.00 2789 155 0.1520 0.1782 REMARK 3 2 5.2988 - 4.2072 1.00 2659 133 0.1182 0.1532 REMARK 3 3 4.2072 - 3.6758 1.00 2633 139 0.1248 0.1547 REMARK 3 4 3.6758 - 3.3398 1.00 2623 128 0.1432 0.1751 REMARK 3 5 3.3398 - 3.1005 1.00 2572 140 0.1548 0.2027 REMARK 3 6 3.1005 - 2.9178 1.00 2610 137 0.1728 0.2211 REMARK 3 7 2.9178 - 2.7717 1.00 2572 147 0.1829 0.2358 REMARK 3 8 2.7717 - 2.6511 1.00 2607 120 0.2120 0.2651 REMARK 3 9 2.6511 - 2.5490 1.00 2571 129 0.2171 0.2836 REMARK 3 10 2.5490 - 2.4611 0.99 2550 130 0.2366 0.2886 REMARK 3 11 2.4611 - 2.3841 0.99 2555 138 0.2465 0.3332 REMARK 3 12 2.3841 - 2.3160 0.99 2509 145 0.2421 0.3003 REMARK 3 13 2.3160 - 2.2550 0.99 2503 143 0.2582 0.2798 REMARK 3 14 2.2550 - 2.2000 0.97 2501 129 0.2878 0.3275 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.95 REMARK 3 K_SOL : 0.35 REMARK 3 B_SOL : 38.12 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.330 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 17.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.68 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.56380 REMARK 3 B22 (A**2) : 3.61810 REMARK 3 B33 (A**2) : -3.05430 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.00000 REMARK 3 B23 (A**2) : -0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.019 6110 REMARK 3 ANGLE : 1.840 8326 REMARK 3 CHIRALITY : 0.115 897 REMARK 3 PLANARITY : 0.009 1088 REMARK 3 DIHEDRAL : 20.767 2312 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : 2 REMARK 3 NCS GROUP : 1 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: chain A and (resseq 5:9 or resseq 11:13 REMARK 3 or resseq 15:32 or resseq 35:63 or resseq REMARK 3 86:92 or resseq 94:210 or resseq 212:289 REMARK 3 or resseq 291:295 or resseq 297:354 ) REMARK 3 SELECTION : chain B and (resseq 5:9 or resseq 11:13 REMARK 3 or resseq 15:32 or resseq 35:63 or resseq REMARK 3 86:92 or resseq 94:210 or resseq 212:289 REMARK 3 or resseq 291:295 or resseq 297:354 ) REMARK 3 ATOM PAIRS NUMBER : 2487 REMARK 3 RMSD : 0.155 REMARK 3 NCS GROUP : 2 REMARK 3 NCS OPERATOR : 1 REMARK 3 REFERENCE SELECTION: chain A and (resseq 401:404 ) REMARK 3 SELECTION : chain B and (resseq 401:404 ) REMARK 3 ATOM PAIRS NUMBER : 48 REMARK 3 RMSD : 0.061 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4E23 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 09-MAR-12. REMARK 100 THE RCSB ID CODE IS RCSB071071. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 09-FEB-01 REMARK 200 TEMPERATURE (KELVIN) : 293 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : MACSCIENCE REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : CARBON MONOCLOMETER REMARK 200 REMARK 200 DETECTOR TYPE : AREA DETECTOR REMARK 200 DETECTOR MANUFACTURER : SIEMENS HI-STAR REMARK 200 INTENSITY-INTEGRATION SOFTWARE : SAINT REMARK 200 DATA SCALING SOFTWARE : SAINT REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38230 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 41.200 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 5.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08900 REMARK 200 FOR THE DATA SET : 13.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.5 REMARK 200 DATA REDUNDANCY IN SHELL : 2.86 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.36700 REMARK 200 FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB 3EVH REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.97 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 24%(W/V) PEG4000, 0.3M AMMONIUM REMARK 280 ACETATE, 0.1M SODIUM CITRATE, PH 5.5, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 32.69300 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 72.70550 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.80350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 72.70550 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 32.69300 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.80350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 118 NZ LYS A 122 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG A 27 CZ ARG A 27 NH1 -0.088 REMARK 500 ARG A 27 CZ ARG A 27 NH2 -0.079 REMARK 500 ARG A 312 CZ ARG A 312 NH1 -0.096 REMARK 500 ARG B 27 CZ ARG B 27 NH1 -0.085 REMARK 500 ARG B 312 CZ ARG B 312 NH1 -0.088 REMARK 500 ARG B 312 CZ ARG B 312 NH2 -0.084 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 27 NH1 - CZ - NH2 ANGL. DEV. = -9.4 DEGREES REMARK 500 ARG A 27 NE - CZ - NH1 ANGL. DEV. = 4.9 DEGREES REMARK 500 ARG A 27 NE - CZ - NH2 ANGL. DEV. = 4.4 DEGREES REMARK 500 ASP A 36 OD1 - CG - OD2 ANGL. DEV. = -12.5 DEGREES REMARK 500 ASP A 36 CB - CG - OD1 ANGL. DEV. = 7.9 DEGREES REMARK 500 ARG A 38 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG A 88 NE - CZ - NH2 ANGL. DEV. = 3.9 DEGREES REMARK 500 ARG A 176 CD - NE - CZ ANGL. DEV. = 8.6 DEGREES REMARK 500 ARG A 176 NE - CZ - NH1 ANGL. DEV. = -6.3 DEGREES REMARK 500 ARG A 176 NE - CZ - NH2 ANGL. DEV. = 6.2 DEGREES REMARK 500 ARG A 214 NE - CZ - NH1 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG A 276 NE - CZ - NH1 ANGL. DEV. = 4.8 DEGREES REMARK 500 ARG A 276 NE - CZ - NH2 ANGL. DEV. = -5.8 DEGREES REMARK 500 ARG A 312 NH1 - CZ - NH2 ANGL. DEV. = -8.6 DEGREES REMARK 500 ARG A 312 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG A 312 NE - CZ - NH2 ANGL. DEV. = 5.2 DEGREES REMARK 500 ARG B 27 NH1 - CZ - NH2 ANGL. DEV. = -7.5 DEGREES REMARK 500 ARG B 27 NE - CZ - NH2 ANGL. DEV. = 6.0 DEGREES REMARK 500 ASP B 36 CB - CG - OD1 ANGL. DEV. = 7.5 DEGREES REMARK 500 ARG B 88 NE - CZ - NH1 ANGL. DEV. = 6.3 DEGREES REMARK 500 ARG B 88 NE - CZ - NH2 ANGL. DEV. = -4.8 DEGREES REMARK 500 ARG B 176 CD - NE - CZ ANGL. DEV. = 8.5 DEGREES REMARK 500 ARG B 176 NE - CZ - NH1 ANGL. DEV. = 5.9 DEGREES REMARK 500 ARG B 176 NE - CZ - NH2 ANGL. DEV. = -7.7 DEGREES REMARK 500 ARG B 276 CD - NE - CZ ANGL. DEV. = 8.9 DEGREES REMARK 500 ARG B 276 NE - CZ - NH1 ANGL. DEV. = -6.7 DEGREES REMARK 500 ARG B 276 NE - CZ - NH2 ANGL. DEV. = 6.2 DEGREES REMARK 500 ARG B 312 NH1 - CZ - NH2 ANGL. DEV. = -8.8 DEGREES REMARK 500 ARG B 312 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG B 312 NE - CZ - NH2 ANGL. DEV. = 5.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 19 -157.61 60.05 REMARK 500 CYS A 189 -6.10 -144.88 REMARK 500 HIS A 240 -124.39 63.84 REMARK 500 PHE A 308 66.49 -100.50 REMARK 500 THR A 335 -74.65 -99.73 REMARK 500 SER B 19 -155.01 56.84 REMARK 500 GLN B 34 63.10 -102.70 REMARK 500 HIS B 73 -169.94 -177.94 REMARK 500 ASP B 79 -12.84 -45.33 REMARK 500 ASN B 158 55.33 -91.83 REMARK 500 CYS B 189 -6.87 -140.52 REMARK 500 HIS B 240 -117.46 67.05 REMARK 500 ASN B 291 79.90 -153.97 REMARK 500 TYR B 298 -35.09 -132.41 REMARK 500 PHE B 308 65.34 -102.74 REMARK 500 THR B 335 -66.48 -99.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER B 32 GLY B 33 -145.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MAW A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LGU A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BEM A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BEM A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MAW B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LGU B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BEM B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BEM B 404 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4E1Y RELATED DB: PDB REMARK 900 H192A APO FORM REMARK 900 RELATED ID: 4E25 RELATED DB: PDB REMARK 900 Y246F/TETRASACCHARIDE COMPLEX DBREF 4E23 A 6 356 UNP Q9KWU1 Q9KWU1_SPHSX 54 404 DBREF 4E23 B 6 356 UNP Q9KWU1 Q9KWU1_SPHSX 54 404 SEQADV 4E23 GLY A 4 UNP Q9KWU1 EXPRESSION TAG SEQADV 4E23 SER A 5 UNP Q9KWU1 EXPRESSION TAG SEQADV 4E23 ALA A 192 UNP Q9KWU1 HIS 240 ENGINEERED MUTATION SEQADV 4E23 GLY B 4 UNP Q9KWU1 EXPRESSION TAG SEQADV 4E23 SER B 5 UNP Q9KWU1 EXPRESSION TAG SEQADV 4E23 ALA B 192 UNP Q9KWU1 HIS 240 ENGINEERED MUTATION SEQRES 1 A 353 GLY SER HIS PRO PHE ASP GLN ALA VAL VAL LYS ASP PRO SEQRES 2 A 353 THR ALA SER TYR VAL ASP VAL LYS ALA ARG ARG THR PHE SEQRES 3 A 353 LEU GLN SER GLY GLN LEU ASP ASP ARG LEU LYS ALA ALA SEQRES 4 A 353 LEU PRO LYS GLU TYR ASP CYS THR THR GLU ALA THR PRO SEQRES 5 A 353 ASN PRO GLN GLN GLY GLU MET VAL ILE PRO ARG ARG TYR SEQRES 6 A 353 LEU SER GLY ASN HIS GLY PRO VAL ASN PRO ASP TYR GLU SEQRES 7 A 353 PRO VAL VAL THR LEU TYR ARG ASP PHE GLU LYS ILE SER SEQRES 8 A 353 ALA THR LEU GLY ASN LEU TYR VAL ALA THR GLY LYS PRO SEQRES 9 A 353 VAL TYR ALA THR CYS LEU LEU ASN MET LEU ASP LYS TRP SEQRES 10 A 353 ALA LYS ALA ASP ALA LEU LEU ASN TYR ASP PRO LYS SER SEQRES 11 A 353 GLN SER TRP TYR GLN VAL GLU TRP SER ALA ALA THR ALA SEQRES 12 A 353 ALA PHE ALA LEU SER THR MET MET ALA GLU PRO ASN VAL SEQRES 13 A 353 ASP THR ALA GLN ARG GLU ARG VAL VAL LYS TRP LEU ASN SEQRES 14 A 353 ARG VAL ALA ARG HIS GLN THR SER PHE PRO GLY GLY ASP SEQRES 15 A 353 THR SER CYS CYS ASN ASN ALA SER TYR TRP ARG GLY GLN SEQRES 16 A 353 GLU ALA THR ILE ILE GLY VAL ILE SER LYS ASP ASP GLU SEQRES 17 A 353 LEU PHE ARG TRP GLY LEU GLY ARG TYR VAL GLN ALA MET SEQRES 18 A 353 GLY LEU ILE ASN GLU ASP GLY SER PHE VAL HIS GLU MET SEQRES 19 A 353 THR ARG HIS GLU GLN SER LEU HIS TYR GLN ASN TYR ALA SEQRES 20 A 353 MET LEU PRO LEU THR MET ILE ALA GLU THR ALA SER ARG SEQRES 21 A 353 GLN GLY ILE ASP LEU TYR ALA TYR LYS GLU ASN GLY ARG SEQRES 22 A 353 ASP ILE HIS SER ALA ARG LYS PHE VAL PHE ALA ALA VAL SEQRES 23 A 353 LYS ASN PRO ASP LEU ILE LYS LYS TYR ALA SER GLU PRO SEQRES 24 A 353 GLN ASP THR ARG ALA PHE LYS PRO GLY ARG GLY ASP LEU SEQRES 25 A 353 ASN TRP ILE GLU TYR GLN ARG ALA ARG PHE GLY PHE ALA SEQRES 26 A 353 ASP GLU LEU GLY PHE MET THR VAL PRO ILE PHE ASP PRO SEQRES 27 A 353 ARG THR GLY GLY SER GLY THR LEU LEU ALA TYR LYS PRO SEQRES 28 A 353 GLN GLY SEQRES 1 B 353 GLY SER HIS PRO PHE ASP GLN ALA VAL VAL LYS ASP PRO SEQRES 2 B 353 THR ALA SER TYR VAL ASP VAL LYS ALA ARG ARG THR PHE SEQRES 3 B 353 LEU GLN SER GLY GLN LEU ASP ASP ARG LEU LYS ALA ALA SEQRES 4 B 353 LEU PRO LYS GLU TYR ASP CYS THR THR GLU ALA THR PRO SEQRES 5 B 353 ASN PRO GLN GLN GLY GLU MET VAL ILE PRO ARG ARG TYR SEQRES 6 B 353 LEU SER GLY ASN HIS GLY PRO VAL ASN PRO ASP TYR GLU SEQRES 7 B 353 PRO VAL VAL THR LEU TYR ARG ASP PHE GLU LYS ILE SER SEQRES 8 B 353 ALA THR LEU GLY ASN LEU TYR VAL ALA THR GLY LYS PRO SEQRES 9 B 353 VAL TYR ALA THR CYS LEU LEU ASN MET LEU ASP LYS TRP SEQRES 10 B 353 ALA LYS ALA ASP ALA LEU LEU ASN TYR ASP PRO LYS SER SEQRES 11 B 353 GLN SER TRP TYR GLN VAL GLU TRP SER ALA ALA THR ALA SEQRES 12 B 353 ALA PHE ALA LEU SER THR MET MET ALA GLU PRO ASN VAL SEQRES 13 B 353 ASP THR ALA GLN ARG GLU ARG VAL VAL LYS TRP LEU ASN SEQRES 14 B 353 ARG VAL ALA ARG HIS GLN THR SER PHE PRO GLY GLY ASP SEQRES 15 B 353 THR SER CYS CYS ASN ASN ALA SER TYR TRP ARG GLY GLN SEQRES 16 B 353 GLU ALA THR ILE ILE GLY VAL ILE SER LYS ASP ASP GLU SEQRES 17 B 353 LEU PHE ARG TRP GLY LEU GLY ARG TYR VAL GLN ALA MET SEQRES 18 B 353 GLY LEU ILE ASN GLU ASP GLY SER PHE VAL HIS GLU MET SEQRES 19 B 353 THR ARG HIS GLU GLN SER LEU HIS TYR GLN ASN TYR ALA SEQRES 20 B 353 MET LEU PRO LEU THR MET ILE ALA GLU THR ALA SER ARG SEQRES 21 B 353 GLN GLY ILE ASP LEU TYR ALA TYR LYS GLU ASN GLY ARG SEQRES 22 B 353 ASP ILE HIS SER ALA ARG LYS PHE VAL PHE ALA ALA VAL SEQRES 23 B 353 LYS ASN PRO ASP LEU ILE LYS LYS TYR ALA SER GLU PRO SEQRES 24 B 353 GLN ASP THR ARG ALA PHE LYS PRO GLY ARG GLY ASP LEU SEQRES 25 B 353 ASN TRP ILE GLU TYR GLN ARG ALA ARG PHE GLY PHE ALA SEQRES 26 B 353 ASP GLU LEU GLY PHE MET THR VAL PRO ILE PHE ASP PRO SEQRES 27 B 353 ARG THR GLY GLY SER GLY THR LEU LEU ALA TYR LYS PRO SEQRES 28 B 353 GLN GLY HET MAW A 401 11 HET LGU A 402 12 HET BEM A 403 12 HET BEM A 404 13 HET MAW B 401 11 HET LGU B 402 12 HET BEM B 403 12 HET BEM B 404 13 HETNAM MAW 4-DEOXY-ALPHA-L-ERYTHRO-HEX-4-ENOPYRANURONIC ACID HETNAM LGU ALPHA-L-GULURONATE HETNAM BEM BETA-D-MANNURONIC ACID HETSYN LGU ALPHA-L-GULOPYRANURONIC ACID HETSYN BEM (2S,3S,4S,5S,6R)-3,4,5,6-TETRAHYDROXYOXANE-2-CARBOXYLIC HETSYN 2 BEM ACID FORMUL 3 MAW 2(C6 H8 O6) FORMUL 3 LGU 2(C6 H10 O7) FORMUL 3 BEM 4(C6 H10 O7) FORMUL 5 HOH *287(H2 O) HELIX 1 1 ASP A 22 GLY A 33 1 12 HELIX 2 2 ASP A 36 LEU A 43 1 8 HELIX 3 3 ASP A 48 GLU A 52 5 5 HELIX 4 4 ASP A 79 GLY A 105 1 27 HELIX 5 5 LYS A 106 ALA A 123 1 18 HELIX 6 6 SER A 133 THR A 152 1 20 HELIX 7 7 ASP A 160 SER A 180 1 21 HELIX 8 8 ASN A 190 SER A 207 1 18 HELIX 9 9 ASP A 209 GLY A 225 1 17 HELIX 10 10 PHE A 233 GLU A 241 5 9 HELIX 11 11 GLN A 242 ARG A 263 1 22 HELIX 12 12 ASP A 267 TYR A 271 5 5 HELIX 13 13 ASP A 277 ASN A 291 1 15 HELIX 14 14 PRO A 292 LYS A 297 1 6 HELIX 15 15 ARG A 312 ASP A 314 5 3 HELIX 16 16 LEU A 315 GLY A 326 1 12 HELIX 17 17 ASP A 340 GLY A 344 5 5 HELIX 18 18 SER A 346 TYR A 352 1 7 HELIX 19 19 ASP B 22 SER B 32 1 11 HELIX 20 20 ASP B 36 LEU B 43 1 8 HELIX 21 21 ASP B 48 GLU B 52 5 5 HELIX 22 22 TYR B 80 GLY B 105 1 26 HELIX 23 23 LYS B 106 ALA B 123 1 18 HELIX 24 24 SER B 133 THR B 152 1 20 HELIX 25 25 ASP B 160 SER B 180 1 21 HELIX 26 26 ASN B 190 SER B 207 1 18 HELIX 27 27 ASP B 209 GLY B 225 1 17 HELIX 28 28 HIS B 235 GLU B 241 5 7 HELIX 29 29 GLN B 242 ARG B 263 1 22 HELIX 30 30 ASP B 277 ASN B 291 1 15 HELIX 31 31 LEU B 294 TYR B 298 5 5 HELIX 32 32 ARG B 312 ASP B 314 5 3 HELIX 33 33 LEU B 315 GLY B 326 1 12 HELIX 34 34 ASP B 340 GLY B 344 5 5 HELIX 35 35 SER B 346 TYR B 352 1 7 SHEET 1 A 2 TYR B 68 SER B 70 0 SHEET 2 A 2 HIS B 73 VAL B 76 -1 O PRO B 75 N LEU B 69 SSBOND 1 CYS A 49 CYS A 112 1555 1555 2.05 SSBOND 2 CYS A 188 CYS A 189 1555 1555 2.05 SSBOND 3 CYS B 49 CYS B 112 1555 1555 2.06 SSBOND 4 CYS B 188 CYS B 189 1555 1555 2.04 LINK C1 BEM A 403 O4 BEM A 404 1555 1555 1.42 LINK C1 LGU A 402 O4 BEM A 403 1555 1555 1.44 LINK C1 LGU B 402 O4 BEM B 403 1555 1555 1.45 LINK C1 BEM B 403 O4 BEM B 404 1555 1555 1.45 LINK C1 MAW B 401 O4 LGU B 402 1555 1555 1.47 LINK C1 MAW A 401 O4 LGU A 402 1555 1555 1.49 CISPEP 1 GLY A 4 SER A 5 0 -3.19 SITE 1 AC1 5 ARG A 312 GLY A 313 LGU A 402 HOH A 557 SITE 2 AC1 5 HOH A 652 SITE 1 AC2 11 ARG A 88 ARG A 306 ARG A 312 ARG A 342 SITE 2 AC2 11 MAW A 401 BEM A 403 HOH A 550 HOH A 552 SITE 3 AC2 11 HOH A 554 HOH A 557 HOH A 633 SITE 1 AC3 15 ARG A 67 TYR A 68 TYR A 80 ARG A 88 SITE 2 AC3 15 TRP A 141 HIS A 245 TYR A 246 TYR A 249 SITE 3 AC3 15 ARG A 306 ARG A 342 LGU A 402 BEM A 404 SITE 4 AC3 15 HOH A 534 HOH A 550 HOH A 559 SITE 1 AC4 11 ARG A 67 GLN A 134 TYR A 137 TRP A 141 SITE 2 AC4 11 ASN A 190 ASN A 191 ARG A 239 TYR A 246 SITE 3 AC4 11 BEM A 403 HOH A 561 HOH A 661 SITE 1 AC5 3 ARG B 312 GLY B 313 LGU B 402 SITE 1 AC6 12 ARG B 67 ARG B 88 ARG B 306 ARG B 312 SITE 2 AC6 12 ARG B 342 MAW B 401 BEM B 403 HOH B 541 SITE 3 AC6 12 HOH B 542 HOH B 559 HOH B 569 HOH B 593 SITE 1 AC7 13 ARG B 67 TYR B 68 TYR B 80 ARG B 88 SITE 2 AC7 13 TRP B 141 HIS B 245 TYR B 246 TYR B 249 SITE 3 AC7 13 ARG B 306 ARG B 342 LGU B 402 BEM B 404 SITE 4 AC7 13 HOH B 541 SITE 1 AC8 11 ARG B 66 ARG B 67 GLN B 134 TYR B 137 SITE 2 AC8 11 TRP B 141 ASN B 190 ASN B 191 ARG B 239 SITE 3 AC8 11 TYR B 246 BEM B 403 HOH B 531 CRYST1 65.386 77.607 145.411 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015294 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012885 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006877 0.00000