HEADER MEMBRANE PROTEIN 08-MAR-12 4E2H TITLE CRYSTAL STRUCTURE OF THE PERIPLASMIC DOMAIN OF SHIGELLA FLEXNERI WZZB COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHAIN LENGTH DETERMINANT PROTEIN; COMPND 3 CHAIN: A, C, B; COMPND 4 FRAGMENT: PERIPLASMIC DOMAIN; COMPND 5 SYNONYM: POLYSACCHARIDE ANTIGEN CHAIN REGULATOR; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SHIGELLA FLEXNERI; SOURCE 3 ORGANISM_TAXID: 623; SOURCE 4 GENE: WZZB, CLD, ROL, SF2089, S2210; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PFO4 KEYWDS WZZ, LPS O-ANTIGEN CHAIN LENGTH DETERMINATION, INNER MEMBRANE, KEYWDS 2 PERIPLASMIC SPACE, MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.KALYNYCH,D.YAO,J.D.MAGEE,M.CYGLER REVDAT 3 20-JUN-12 4E2H 1 JRNL REVDAT 2 04-APR-12 4E2H 1 JRNL REVDAT 1 28-MAR-12 4E2H 0 JRNL AUTH S.KALYNYCH,D.YAO,J.MAGEE,M.CYGLER JRNL TITL STRUCTURAL CHARACTERIZATION OF CLOSELY RELATED O-ANTIGEN JRNL TITL 2 LIPOPOLYSACCHARIDE (LPS) CHAIN LENGTH REGULATORS. JRNL REF J.BIOL.CHEM. V. 287 15696 2012 JRNL REFN ISSN 0021-9258 JRNL PMID 22437828 JRNL DOI 10.1074/JBC.M112.354837 REMARK 2 REMARK 2 RESOLUTION. 2.36 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7_650) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : MLHL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.36 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.60 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 78.0 REMARK 3 NUMBER OF REFLECTIONS : 22670 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.248 REMARK 3 R VALUE (WORKING SET) : 0.245 REMARK 3 FREE R VALUE : 0.302 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.120 REMARK 3 FREE R VALUE TEST SET COUNT : 1509 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.6077 - 5.2482 0.99 3318 190 0.2327 0.2830 REMARK 3 2 5.2482 - 4.1663 0.98 3211 182 0.2059 0.2581 REMARK 3 3 4.1663 - 3.6399 0.97 3171 171 0.2132 0.2769 REMARK 3 4 3.6399 - 3.3071 0.94 3097 149 0.2455 0.3288 REMARK 3 5 3.3071 - 3.0701 0.90 2923 158 0.2711 0.3273 REMARK 3 6 3.0701 - 2.8891 0.82 2677 141 0.2645 0.3129 REMARK 3 7 2.8891 - 2.7445 0.77 2464 140 0.2760 0.3427 REMARK 3 8 2.7445 - 2.6250 0.69 2225 132 0.2999 0.3835 REMARK 3 9 2.6250 - 2.5240 0.60 1939 100 0.3244 0.3720 REMARK 3 10 2.5240 - 2.4369 0.51 1665 77 0.3387 0.3767 REMARK 3 11 2.4369 - 2.3600 0.39 1273 69 0.3380 0.3627 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.00 REMARK 3 SHRINKAGE RADIUS : 0.72 REMARK 3 K_SOL : 0.33 REMARK 3 B_SOL : 36.38 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.380 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 34.600 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 52.94 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 18.67200 REMARK 3 B22 (A**2) : -3.09800 REMARK 3 B33 (A**2) : -15.57410 REMARK 3 B12 (A**2) : -0.00000 REMARK 3 B13 (A**2) : -2.60390 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 5000 REMARK 3 ANGLE : 1.394 6795 REMARK 3 CHIRALITY : 0.090 809 REMARK 3 PLANARITY : 0.007 896 REMARK 3 DIHEDRAL : 20.194 1832 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4E2H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-MAR-12. REMARK 100 THE RCSB ID CODE IS RCSB071085. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-JUL-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CLSI REMARK 200 BEAMLINE : 08ID-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97912 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22670 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.360 REMARK 200 RESOLUTION RANGE LOW (A) : 49.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 22.600 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.03 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG4000, 0.1M HEPES, 0.1M MGCL2, REMARK 280 PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 31.30950 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8260 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32580 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -36.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 46 REMARK 465 HIS A 47 REMARK 465 HIS A 48 REMARK 465 HIS A 49 REMARK 465 HIS A 50 REMARK 465 HIS A 51 REMARK 465 GLY A 52 REMARK 465 SER A 53 REMARK 465 GLU A 54 REMARK 465 LYS A 55 REMARK 465 TRP A 56 REMARK 465 ASN A 112 REMARK 465 GLN A 113 REMARK 465 GLU A 114 REMARK 465 GLU A 115 REMARK 465 PRO A 116 REMARK 465 GLU A 117 REMARK 465 LYS A 118 REMARK 465 PHE A 269 REMARK 465 ASP A 270 REMARK 465 ASP A 271 REMARK 465 LEU A 272 REMARK 465 ASP A 273 REMARK 465 ILE A 274 REMARK 465 HIS C 46 REMARK 465 HIS C 47 REMARK 465 HIS C 48 REMARK 465 HIS C 49 REMARK 465 HIS C 50 REMARK 465 HIS C 51 REMARK 465 GLY C 52 REMARK 465 SER C 53 REMARK 465 GLU C 54 REMARK 465 LYS C 55 REMARK 465 GLN C 216 REMARK 465 VAL C 217 REMARK 465 GLN C 218 REMARK 465 GLN C 219 REMARK 465 THR C 220 REMARK 465 GLU C 221 REMARK 465 ASP C 222 REMARK 465 VAL C 223 REMARK 465 THR C 224 REMARK 465 GLN C 225 REMARK 465 ASP C 226 REMARK 465 THR C 227 REMARK 465 LEU C 228 REMARK 465 GLU C 243 REMARK 465 ALA C 244 REMARK 465 THR C 245 REMARK 465 ARG C 246 REMARK 465 PRO C 247 REMARK 465 ASP C 271 REMARK 465 LEU C 272 REMARK 465 ASP C 273 REMARK 465 ILE C 274 REMARK 465 HIS B 46 REMARK 465 HIS B 47 REMARK 465 HIS B 48 REMARK 465 HIS B 49 REMARK 465 HIS B 50 REMARK 465 HIS B 51 REMARK 465 GLY B 52 REMARK 465 SER B 53 REMARK 465 GLU B 54 REMARK 465 LYS B 55 REMARK 465 LEU B 267 REMARK 465 LYS B 268 REMARK 465 PHE B 269 REMARK 465 ASP B 270 REMARK 465 ASP B 271 REMARK 465 LEU B 272 REMARK 465 ASP B 273 REMARK 465 LEU B 285 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE A 121 CG1 CG2 CD1 REMARK 470 GLU A 122 CG CD OE1 OE2 REMARK 470 SER A 124 OG REMARK 470 LYS A 126 CG CD CE NZ REMARK 470 GLN A 139 CG CD OE1 NE2 REMARK 470 GLU A 142 CG CD OE1 OE2 REMARK 470 GLN A 161 CG CD OE1 NE2 REMARK 470 GLU A 162 CG CD OE1 OE2 REMARK 470 GLU A 164 CG CD OE1 OE2 REMARK 470 ARG A 183 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 202 CG CD OE1 OE2 REMARK 470 GLN A 209 CG CD OE1 NE2 REMARK 470 GLN A 218 CG CD OE1 NE2 REMARK 470 GLU A 265 CG CD OE1 OE2 REMARK 470 MSE A 281 CG SE CE REMARK 470 LYS A 282 CG CD CE NZ REMARK 470 GLN C 83 CG CD OE1 NE2 REMARK 470 ARG C 98 CG CD NE CZ NH1 NH2 REMARK 470 GLN C 129 CG CD OE1 NE2 REMARK 470 LEU C 130 CG CD1 CD2 REMARK 470 MSE C 146 SE CE REMARK 470 LYS C 168 CG CD CE NZ REMARK 470 ARG C 175 CG CD NE CZ NH1 NH2 REMARK 470 ARG C 196 CG CD NE CZ NH1 NH2 REMARK 470 GLN C 201 CG CD OE1 NE2 REMARK 470 GLN C 211 CG CD OE1 NE2 REMARK 470 LYS C 214 CG CD CE NZ REMARK 470 PHE C 229 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LEU C 230 CG CD1 CD2 REMARK 470 SER C 238 OG REMARK 470 ILE C 240 CG1 CG2 CD1 REMARK 470 VAL C 249 CG1 CG2 REMARK 470 GLN C 256 CG CD OE1 NE2 REMARK 470 ASP C 263 CG OD1 OD2 REMARK 470 LYS C 266 CG CD CE NZ REMARK 470 LYS C 268 CG CD CE NZ REMARK 470 ASP C 270 CG OD1 OD2 REMARK 470 TRP B 56 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP B 56 CZ3 CH2 REMARK 470 GLN B 83 CG CD OE1 NE2 REMARK 470 GLU B 114 CG CD OE1 OE2 REMARK 470 GLU B 115 CG CD OE1 OE2 REMARK 470 GLU B 117 CG CD OE1 OE2 REMARK 470 LYS B 118 CG CD CE NZ REMARK 470 GLN B 128 CG CD OE1 NE2 REMARK 470 LEU B 130 CG CD1 CD2 REMARK 470 GLU B 142 CG CD OE1 OE2 REMARK 470 LYS B 176 CG CD CE NZ REMARK 470 THR B 220 OG1 CG2 REMARK 470 GLU B 221 CG CD OE1 OE2 REMARK 470 LYS B 266 CG CD CE NZ REMARK 470 MSE B 281 CG SE CE REMARK 470 LYS B 282 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LYS A 268 O HOH A 319 2.07 REMARK 500 OH TYR C 206 O HOH C 307 2.10 REMARK 500 O ILE C 240 O HOH C 313 2.14 REMARK 500 O GLU C 191 O HOH C 305 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU C 130 N - CA - C ANGL. DEV. = -17.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 124 103.59 29.22 REMARK 500 PRO A 131 -165.37 -75.27 REMARK 500 GLN A 139 7.68 -151.74 REMARK 500 GLN A 145 -71.84 -59.88 REMARK 500 ARG A 183 42.23 -81.03 REMARK 500 GLN A 216 75.42 -116.76 REMARK 500 ASP A 226 -13.65 71.00 REMARK 500 GLU A 243 -32.15 -37.34 REMARK 500 GLU A 265 8.60 -69.58 REMARK 500 PRO A 283 158.22 -49.55 REMARK 500 LYS C 87 151.05 -49.28 REMARK 500 ASN C 112 34.81 -92.62 REMARK 500 VAL C 125 -119.49 -125.59 REMARK 500 GLN C 129 55.62 131.64 REMARK 500 LEU C 130 -131.34 62.17 REMARK 500 GLN C 209 37.91 -99.27 REMARK 500 ALA C 210 84.19 55.31 REMARK 500 GLN C 211 -63.28 -123.49 REMARK 500 VAL C 212 -47.70 68.54 REMARK 500 THR C 213 -162.72 -116.11 REMARK 500 SER C 238 -88.30 153.01 REMARK 500 MSE C 239 155.14 77.47 REMARK 500 ILE C 240 90.92 76.70 REMARK 500 LYS C 241 -151.49 -152.01 REMARK 500 LEU C 261 -10.31 -159.96 REMARK 500 LYS C 266 80.67 -156.76 REMARK 500 LEU C 267 109.97 173.47 REMARK 500 PHE C 269 -9.12 -56.63 REMARK 500 THR C 284 -169.61 -101.15 REMARK 500 GLN B 69 132.19 106.15 REMARK 500 ILE B 70 16.43 54.63 REMARK 500 PRO B 116 -166.10 -38.56 REMARK 500 GLU B 117 -9.44 -157.57 REMARK 500 LYS B 118 83.11 54.98 REMARK 500 GLN B 218 -73.55 -72.95 REMARK 500 ASP B 222 137.06 79.34 REMARK 500 MSE B 239 -50.52 156.41 REMARK 500 THR B 245 -4.75 -159.51 REMARK 500 GLU B 265 18.95 -66.90 REMARK 500 HIS B 275 71.83 97.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLN C 129 LEU C 130 37.15 REMARK 500 LEU C 130 PRO C 131 126.56 REMARK 500 THR C 213 LYS C 214 -147.34 REMARK 500 MSE C 239 ILE C 240 -148.56 REMARK 500 GLY B 68 GLN B 69 -148.10 REMARK 500 GLN B 129 LEU B 130 -141.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 306 DISTANCE = 5.29 ANGSTROMS REMARK 525 HOH B 307 DISTANCE = 5.31 ANGSTROMS REMARK 525 HOH B 309 DISTANCE = 7.45 ANGSTROMS REMARK 525 HOH C 321 DISTANCE = 5.57 ANGSTROMS REMARK 525 HOH C 328 DISTANCE = 5.44 ANGSTROMS REMARK 525 HOH C 330 DISTANCE = 5.91 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4E29 RELATED DB: PDB REMARK 900 RELATED ID: 4E2C RELATED DB: PDB REMARK 900 RELATED ID: 4E2L RELATED DB: PDB DBREF 4E2H A 54 285 UNP P37792 WZZB_SHIFL 54 285 DBREF 4E2H C 54 285 UNP P37792 WZZB_SHIFL 54 285 DBREF 4E2H B 54 285 UNP P37792 WZZB_SHIFL 54 285 SEQADV 4E2H HIS A 46 UNP P37792 EXPRESSION TAG SEQADV 4E2H HIS A 47 UNP P37792 EXPRESSION TAG SEQADV 4E2H HIS A 48 UNP P37792 EXPRESSION TAG SEQADV 4E2H HIS A 49 UNP P37792 EXPRESSION TAG SEQADV 4E2H HIS A 50 UNP P37792 EXPRESSION TAG SEQADV 4E2H HIS A 51 UNP P37792 EXPRESSION TAG SEQADV 4E2H GLY A 52 UNP P37792 EXPRESSION TAG SEQADV 4E2H SER A 53 UNP P37792 EXPRESSION TAG SEQADV 4E2H HIS C 46 UNP P37792 EXPRESSION TAG SEQADV 4E2H HIS C 47 UNP P37792 EXPRESSION TAG SEQADV 4E2H HIS C 48 UNP P37792 EXPRESSION TAG SEQADV 4E2H HIS C 49 UNP P37792 EXPRESSION TAG SEQADV 4E2H HIS C 50 UNP P37792 EXPRESSION TAG SEQADV 4E2H HIS C 51 UNP P37792 EXPRESSION TAG SEQADV 4E2H GLY C 52 UNP P37792 EXPRESSION TAG SEQADV 4E2H SER C 53 UNP P37792 EXPRESSION TAG SEQADV 4E2H HIS B 46 UNP P37792 EXPRESSION TAG SEQADV 4E2H HIS B 47 UNP P37792 EXPRESSION TAG SEQADV 4E2H HIS B 48 UNP P37792 EXPRESSION TAG SEQADV 4E2H HIS B 49 UNP P37792 EXPRESSION TAG SEQADV 4E2H HIS B 50 UNP P37792 EXPRESSION TAG SEQADV 4E2H HIS B 51 UNP P37792 EXPRESSION TAG SEQADV 4E2H GLY B 52 UNP P37792 EXPRESSION TAG SEQADV 4E2H SER B 53 UNP P37792 EXPRESSION TAG SEQRES 1 A 240 HIS HIS HIS HIS HIS HIS GLY SER GLU LYS TRP THR SER SEQRES 2 A 240 THR ALA ILE ILE THR GLN PRO ASP VAL GLY GLN ILE ALA SEQRES 3 A 240 GLY TYR ASN ASN ALA MSE ASN VAL ILE TYR GLY GLN ALA SEQRES 4 A 240 ALA PRO LYS VAL SER ASP LEU GLN GLU THR LEU ILE GLY SEQRES 5 A 240 ARG PHE SER SER ALA PHE SER ALA LEU ALA GLU THR LEU SEQRES 6 A 240 ASP ASN GLN GLU GLU PRO GLU LYS LEU THR ILE GLU PRO SEQRES 7 A 240 SER VAL LYS ASN GLN GLN LEU PRO LEU THR VAL SER TYR SEQRES 8 A 240 VAL GLY GLN THR ALA GLU GLY ALA GLN MSE LYS LEU ALA SEQRES 9 A 240 GLN TYR ILE GLN GLN VAL ASP ASP LYS VAL ASN GLN GLU SEQRES 10 A 240 LEU GLU LYS ASP LEU LYS ASP ASN ILE ALA LEU GLY ARG SEQRES 11 A 240 LYS ASN LEU GLN ASP SER LEU ARG THR GLN GLU VAL VAL SEQRES 12 A 240 ALA GLN GLU GLN LYS ASP LEU ARG ILE ARG GLN ILE GLN SEQRES 13 A 240 GLU ALA LEU GLN TYR ALA ASN GLN ALA GLN VAL THR LYS SEQRES 14 A 240 PRO GLN VAL GLN GLN THR GLU ASP VAL THR GLN ASP THR SEQRES 15 A 240 LEU PHE LEU LEU GLY SER GLU ALA LEU GLU SER MSE ILE SEQRES 16 A 240 LYS HIS GLU ALA THR ARG PRO LEU VAL PHE SER PRO ASN SEQRES 17 A 240 TYR TYR GLN THR ARG GLN ASN LEU LEU ASP ILE GLU LYS SEQRES 18 A 240 LEU LYS PHE ASP ASP LEU ASP ILE HIS ALA TYR ARG TYR SEQRES 19 A 240 VAL MSE LYS PRO THR LEU SEQRES 1 C 240 HIS HIS HIS HIS HIS HIS GLY SER GLU LYS TRP THR SER SEQRES 2 C 240 THR ALA ILE ILE THR GLN PRO ASP VAL GLY GLN ILE ALA SEQRES 3 C 240 GLY TYR ASN ASN ALA MSE ASN VAL ILE TYR GLY GLN ALA SEQRES 4 C 240 ALA PRO LYS VAL SER ASP LEU GLN GLU THR LEU ILE GLY SEQRES 5 C 240 ARG PHE SER SER ALA PHE SER ALA LEU ALA GLU THR LEU SEQRES 6 C 240 ASP ASN GLN GLU GLU PRO GLU LYS LEU THR ILE GLU PRO SEQRES 7 C 240 SER VAL LYS ASN GLN GLN LEU PRO LEU THR VAL SER TYR SEQRES 8 C 240 VAL GLY GLN THR ALA GLU GLY ALA GLN MSE LYS LEU ALA SEQRES 9 C 240 GLN TYR ILE GLN GLN VAL ASP ASP LYS VAL ASN GLN GLU SEQRES 10 C 240 LEU GLU LYS ASP LEU LYS ASP ASN ILE ALA LEU GLY ARG SEQRES 11 C 240 LYS ASN LEU GLN ASP SER LEU ARG THR GLN GLU VAL VAL SEQRES 12 C 240 ALA GLN GLU GLN LYS ASP LEU ARG ILE ARG GLN ILE GLN SEQRES 13 C 240 GLU ALA LEU GLN TYR ALA ASN GLN ALA GLN VAL THR LYS SEQRES 14 C 240 PRO GLN VAL GLN GLN THR GLU ASP VAL THR GLN ASP THR SEQRES 15 C 240 LEU PHE LEU LEU GLY SER GLU ALA LEU GLU SER MSE ILE SEQRES 16 C 240 LYS HIS GLU ALA THR ARG PRO LEU VAL PHE SER PRO ASN SEQRES 17 C 240 TYR TYR GLN THR ARG GLN ASN LEU LEU ASP ILE GLU LYS SEQRES 18 C 240 LEU LYS PHE ASP ASP LEU ASP ILE HIS ALA TYR ARG TYR SEQRES 19 C 240 VAL MSE LYS PRO THR LEU SEQRES 1 B 240 HIS HIS HIS HIS HIS HIS GLY SER GLU LYS TRP THR SER SEQRES 2 B 240 THR ALA ILE ILE THR GLN PRO ASP VAL GLY GLN ILE ALA SEQRES 3 B 240 GLY TYR ASN ASN ALA MSE ASN VAL ILE TYR GLY GLN ALA SEQRES 4 B 240 ALA PRO LYS VAL SER ASP LEU GLN GLU THR LEU ILE GLY SEQRES 5 B 240 ARG PHE SER SER ALA PHE SER ALA LEU ALA GLU THR LEU SEQRES 6 B 240 ASP ASN GLN GLU GLU PRO GLU LYS LEU THR ILE GLU PRO SEQRES 7 B 240 SER VAL LYS ASN GLN GLN LEU PRO LEU THR VAL SER TYR SEQRES 8 B 240 VAL GLY GLN THR ALA GLU GLY ALA GLN MSE LYS LEU ALA SEQRES 9 B 240 GLN TYR ILE GLN GLN VAL ASP ASP LYS VAL ASN GLN GLU SEQRES 10 B 240 LEU GLU LYS ASP LEU LYS ASP ASN ILE ALA LEU GLY ARG SEQRES 11 B 240 LYS ASN LEU GLN ASP SER LEU ARG THR GLN GLU VAL VAL SEQRES 12 B 240 ALA GLN GLU GLN LYS ASP LEU ARG ILE ARG GLN ILE GLN SEQRES 13 B 240 GLU ALA LEU GLN TYR ALA ASN GLN ALA GLN VAL THR LYS SEQRES 14 B 240 PRO GLN VAL GLN GLN THR GLU ASP VAL THR GLN ASP THR SEQRES 15 B 240 LEU PHE LEU LEU GLY SER GLU ALA LEU GLU SER MSE ILE SEQRES 16 B 240 LYS HIS GLU ALA THR ARG PRO LEU VAL PHE SER PRO ASN SEQRES 17 B 240 TYR TYR GLN THR ARG GLN ASN LEU LEU ASP ILE GLU LYS SEQRES 18 B 240 LEU LYS PHE ASP ASP LEU ASP ILE HIS ALA TYR ARG TYR SEQRES 19 B 240 VAL MSE LYS PRO THR LEU MODRES 4E2H MSE A 77 MET SELENOMETHIONINE MODRES 4E2H MSE A 146 MET SELENOMETHIONINE MODRES 4E2H MSE A 239 MET SELENOMETHIONINE MODRES 4E2H MSE A 281 MET SELENOMETHIONINE MODRES 4E2H MSE C 77 MET SELENOMETHIONINE MODRES 4E2H MSE C 146 MET SELENOMETHIONINE MODRES 4E2H MSE C 239 MET SELENOMETHIONINE MODRES 4E2H MSE C 281 MET SELENOMETHIONINE MODRES 4E2H MSE B 77 MET SELENOMETHIONINE MODRES 4E2H MSE B 146 MET SELENOMETHIONINE MODRES 4E2H MSE B 239 MET SELENOMETHIONINE MODRES 4E2H MSE B 281 MET SELENOMETHIONINE HET MSE A 77 8 HET MSE A 146 8 HET MSE A 239 8 HET MSE A 281 5 HET MSE C 77 8 HET MSE C 146 6 HET MSE C 239 8 HET MSE C 281 8 HET MSE B 77 8 HET MSE B 146 8 HET MSE B 239 8 HET MSE B 281 5 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 12(C5 H11 N O2 SE) FORMUL 4 HOH *78(H2 O) HELIX 1 1 ASP A 66 GLN A 69 5 4 HELIX 2 2 ILE A 70 GLY A 82 1 13 HELIX 3 3 GLN A 83 ALA A 85 5 3 HELIX 4 4 VAL A 88 THR A 109 1 22 HELIX 5 5 THR A 140 GLN A 154 1 15 HELIX 6 6 GLN A 154 GLN A 209 1 56 HELIX 7 7 GLN A 219 VAL A 223 5 5 HELIX 8 8 THR A 227 LEU A 231 5 5 HELIX 9 9 GLY A 232 HIS A 242 1 11 HELIX 10 10 GLU A 243 ARG A 246 5 4 HELIX 11 11 SER A 251 GLU A 265 1 15 HELIX 12 12 ASP C 66 GLY C 82 1 17 HELIX 13 13 LYS C 87 ASN C 112 1 26 HELIX 14 14 THR C 140 ASN C 208 1 69 HELIX 15 15 SER C 233 GLU C 237 5 5 HELIX 16 16 SER C 251 ARG C 258 1 8 HELIX 17 17 ILE B 70 TYR B 81 1 12 HELIX 18 18 LYS B 87 ASP B 111 1 25 HELIX 19 19 ALA B 141 ALA B 210 1 70 HELIX 20 20 ASP B 226 LEU B 230 5 5 HELIX 21 21 LEU B 231 LYS B 241 1 11 HELIX 22 22 HIS B 242 ARG B 246 5 5 HELIX 23 23 SER B 251 GLU B 265 1 15 SHEET 1 A 4 THR A 120 GLU A 122 0 SHEET 2 A 4 LEU A 132 TYR A 136 -1 O THR A 133 N GLU A 122 SHEET 3 A 4 SER A 58 THR A 63 -1 N SER A 58 O TYR A 136 SHEET 4 A 4 ARG A 278 MSE A 281 -1 O VAL A 280 N ILE A 61 SHEET 1 B 4 LYS C 118 PRO C 123 0 SHEET 2 B 4 LEU C 132 VAL C 137 -1 O THR C 133 N GLU C 122 SHEET 3 B 4 THR C 57 THR C 63 -1 N ILE C 62 O LEU C 132 SHEET 4 B 4 ARG C 278 MSE C 281 -1 O VAL C 280 N ILE C 61 SHEET 1 C 4 LEU B 119 PRO B 123 0 SHEET 2 C 4 LEU B 132 VAL B 137 -1 O SER B 135 N THR B 120 SHEET 3 C 4 THR B 57 THR B 63 -1 N SER B 58 O TYR B 136 SHEET 4 C 4 ARG B 278 MSE B 281 -1 O VAL B 280 N ILE B 61 LINK C ALA A 76 N MSE A 77 1555 1555 1.33 LINK C MSE A 77 N ASN A 78 1555 1555 1.33 LINK C GLN A 145 N MSE A 146 1555 1555 1.33 LINK C MSE A 146 N LYS A 147 1555 1555 1.33 LINK C SER A 238 N MSE A 239 1555 1555 1.33 LINK C MSE A 239 N ILE A 240 1555 1555 1.33 LINK C VAL A 280 N MSE A 281 1555 1555 1.33 LINK C MSE A 281 N LYS A 282 1555 1555 1.33 LINK C ALA C 76 N MSE C 77 1555 1555 1.33 LINK C MSE C 77 N ASN C 78 1555 1555 1.33 LINK C GLN C 145 N MSE C 146 1555 1555 1.32 LINK C MSE C 146 N LYS C 147 1555 1555 1.33 LINK C SER C 238 N MSE C 239 1555 1555 1.32 LINK C MSE C 239 N ILE C 240 1555 1555 1.33 LINK C VAL C 280 N MSE C 281 1555 1555 1.33 LINK C MSE C 281 N LYS C 282 1555 1555 1.34 LINK C ALA B 76 N MSE B 77 1555 1555 1.33 LINK C MSE B 77 N ASN B 78 1555 1555 1.33 LINK C GLN B 145 N MSE B 146 1555 1555 1.33 LINK C MSE B 146 N LYS B 147 1555 1555 1.33 LINK C SER B 238 N MSE B 239 1555 1555 1.33 LINK C MSE B 239 N ILE B 240 1555 1555 1.33 LINK C VAL B 280 N MSE B 281 1555 1555 1.33 LINK C MSE B 281 N LYS B 282 1555 1555 1.34 CISPEP 1 SER A 124 VAL A 125 0 16.79 CISPEP 2 LEU A 130 PRO A 131 0 -5.11 CRYST1 81.514 62.619 90.740 90.00 94.67 90.00 P 1 21 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012268 0.000000 0.001001 0.00000 SCALE2 0.000000 0.015970 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011057 0.00000