HEADER LYASE 09-MAR-12 4E38 TITLE CRYSTAL STRUCTURE OF PROBABLE KETO-HYDROXYGLUTARATE-ALDOLASE FROM TITLE 2 VIBRIONALES BACTERIUM SWAT-3 (TARGET EFI-502156) COMPND MOL_ID: 1; COMPND 2 MOLECULE: KETO-HYDROXYGLUTARATE-ALDOLASE/KETO-DEOXY-PHOSPHOGLUCONATE COMPND 3 ALDOLASE; COMPND 4 CHAIN: A, B, C; COMPND 5 EC: 4.1.3.16; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIONALES BACTERIUM SWAT-3; SOURCE 3 ORGANISM_TAXID: 391574; SOURCE 4 GENE: VSWAT3_13722; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET KEYWDS LYASE, STRUCTURAL GENOMICS EXPDTA X-RAY DIFFRACTION AUTHOR Y.PATSKOVSKY,R.TORO,R.BHOSLE,B.HILLERICH,R.D.SEIDEL,E.WASHINGTON, AUTHOR 2 A.SCOTT GLENN,S.CHOWDHURY,B.EVANS,J.HAMMONDS,W.D.ZENCHECK,H.J.IMKER, AUTHOR 3 J.A.GERLT,K.N.ALLEN,D.DUNAWAY-MARIANO,S.C.ALMO,ENZYME FUNCTION AUTHOR 4 INITIATIVE (EFI) REVDAT 2 13-SEP-23 4E38 1 REMARK SEQADV REVDAT 1 21-MAR-12 4E38 0 JRNL AUTH Y.PATSKOVSKY,R.TORO,R.BHOSLE,B.HILLERICH,R.D.SEIDEL, JRNL AUTH 2 E.WASHINGTON,A.SCOTT GLENN,S.CHOWDHURY,B.EVANS,J.HAMMONDS, JRNL AUTH 3 W.D.ZENCHECK,H.J.IMKER,K.N.ALLEN,D.DUNAWAY-MARIANO, JRNL AUTH 4 J.A.GERLT,S.C.ALMO JRNL TITL CRYSTAL STRUCTURE OF PROBABLE KETO-HYDROXYGLUTARATE-ALDOLASE JRNL TITL 2 FROM VIBRIONALES BACTERIUM SWAT-3 (TARGET EFI-502156) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.64 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.64 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 67.72 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 89441 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.171 REMARK 3 FREE R VALUE : 0.204 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2765 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.64 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.69 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6388 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.42 REMARK 3 BIN R VALUE (WORKING SET) : 0.2960 REMARK 3 BIN FREE R VALUE SET COUNT : 207 REMARK 3 BIN FREE R VALUE : 0.3580 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4850 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 7 REMARK 3 SOLVENT ATOMS : 592 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.89 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.19 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.56000 REMARK 3 B22 (A**2) : 0.49000 REMARK 3 B33 (A**2) : 0.07000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.081 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.084 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.058 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.685 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.973 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.963 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5009 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6847 ; 1.318 ; 1.983 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 680 ; 4.874 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 194 ;36.469 ;26.031 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 848 ;12.633 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;17.074 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 822 ; 0.091 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3760 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3293 ; 3.243 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5342 ; 4.810 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1716 ; 6.571 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1490 ; 9.864 ; 5.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4E38 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-MAR-12. REMARK 100 THE DEPOSITION ID IS D_1000071112. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-FEB-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.075 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 92852 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.640 REMARK 200 RESOLUTION RANGE LOW (A) : 70.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -5.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 8.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.05300 REMARK 200 FOR THE DATA SET : 10.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.64 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.67 REMARK 200 COMPLETENESS FOR SHELL (%) : 86.8 REMARK 200 DATA REDUNDANCY IN SHELL : 7.70 REMARK 200 R MERGE FOR SHELL (I) : 0.09400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MR REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1VHC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.62 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.54 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M BIS-TRIS, 0.5M MAGNESIUM FORMATE, REMARK 280 PH 6.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 37.75150 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 61.80000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 40.48000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 61.80000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 37.75150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 40.48000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4550 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25200 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -101.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -22 REMARK 465 HIS A -21 REMARK 465 HIS A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 SER A -15 REMARK 465 SER A -14 REMARK 465 GLY A -13 REMARK 465 VAL A -12 REMARK 465 ASP A -11 REMARK 465 LEU A -10 REMARK 465 GLY A -9 REMARK 465 THR A -8 REMARK 465 GLU A -7 REMARK 465 ASN A -6 REMARK 465 LEU A -5 REMARK 465 TYR A -4 REMARK 465 MET B -22 REMARK 465 HIS B -21 REMARK 465 HIS B -20 REMARK 465 HIS B -19 REMARK 465 HIS B -18 REMARK 465 HIS B -17 REMARK 465 HIS B -16 REMARK 465 SER B -15 REMARK 465 SER B -14 REMARK 465 GLY B -13 REMARK 465 VAL B -12 REMARK 465 ASP B -11 REMARK 465 LEU B -10 REMARK 465 GLY B -9 REMARK 465 THR B -8 REMARK 465 GLU B -7 REMARK 465 ASN B -6 REMARK 465 LEU B -5 REMARK 465 TYR B -4 REMARK 465 MET C -22 REMARK 465 HIS C -21 REMARK 465 HIS C -20 REMARK 465 HIS C -19 REMARK 465 HIS C -18 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 572 O HOH C 635 3655 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG C 57 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG C 57 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 12 -26.49 69.44 REMARK 500 ASN A 112 12.15 -144.97 REMARK 500 TYR A 149 77.41 -115.01 REMARK 500 LYS B 12 -24.02 70.02 REMARK 500 ASN B 112 13.09 -148.30 REMARK 500 LYS C 12 -23.41 71.92 REMARK 500 ASN C 112 12.26 -149.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL C 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL C 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EFI-502156 RELATED DB: TARGETTRACK DBREF 4E38 A 1 209 UNP A5KUH7 A5KUH7_9GAMM 1 209 DBREF 4E38 B 1 209 UNP A5KUH7 A5KUH7_9GAMM 1 209 DBREF 4E38 C 1 209 UNP A5KUH7 A5KUH7_9GAMM 1 209 SEQADV 4E38 MET A -22 UNP A5KUH7 EXPRESSION TAG SEQADV 4E38 HIS A -21 UNP A5KUH7 EXPRESSION TAG SEQADV 4E38 HIS A -20 UNP A5KUH7 EXPRESSION TAG SEQADV 4E38 HIS A -19 UNP A5KUH7 EXPRESSION TAG SEQADV 4E38 HIS A -18 UNP A5KUH7 EXPRESSION TAG SEQADV 4E38 HIS A -17 UNP A5KUH7 EXPRESSION TAG SEQADV 4E38 HIS A -16 UNP A5KUH7 EXPRESSION TAG SEQADV 4E38 SER A -15 UNP A5KUH7 EXPRESSION TAG SEQADV 4E38 SER A -14 UNP A5KUH7 EXPRESSION TAG SEQADV 4E38 GLY A -13 UNP A5KUH7 EXPRESSION TAG SEQADV 4E38 VAL A -12 UNP A5KUH7 EXPRESSION TAG SEQADV 4E38 ASP A -11 UNP A5KUH7 EXPRESSION TAG SEQADV 4E38 LEU A -10 UNP A5KUH7 EXPRESSION TAG SEQADV 4E38 GLY A -9 UNP A5KUH7 EXPRESSION TAG SEQADV 4E38 THR A -8 UNP A5KUH7 EXPRESSION TAG SEQADV 4E38 GLU A -7 UNP A5KUH7 EXPRESSION TAG SEQADV 4E38 ASN A -6 UNP A5KUH7 EXPRESSION TAG SEQADV 4E38 LEU A -5 UNP A5KUH7 EXPRESSION TAG SEQADV 4E38 TYR A -4 UNP A5KUH7 EXPRESSION TAG SEQADV 4E38 PHE A -3 UNP A5KUH7 EXPRESSION TAG SEQADV 4E38 GLN A -2 UNP A5KUH7 EXPRESSION TAG SEQADV 4E38 SER A -1 UNP A5KUH7 EXPRESSION TAG SEQADV 4E38 MET A 0 UNP A5KUH7 EXPRESSION TAG SEQADV 4E38 MET B -22 UNP A5KUH7 EXPRESSION TAG SEQADV 4E38 HIS B -21 UNP A5KUH7 EXPRESSION TAG SEQADV 4E38 HIS B -20 UNP A5KUH7 EXPRESSION TAG SEQADV 4E38 HIS B -19 UNP A5KUH7 EXPRESSION TAG SEQADV 4E38 HIS B -18 UNP A5KUH7 EXPRESSION TAG SEQADV 4E38 HIS B -17 UNP A5KUH7 EXPRESSION TAG SEQADV 4E38 HIS B -16 UNP A5KUH7 EXPRESSION TAG SEQADV 4E38 SER B -15 UNP A5KUH7 EXPRESSION TAG SEQADV 4E38 SER B -14 UNP A5KUH7 EXPRESSION TAG SEQADV 4E38 GLY B -13 UNP A5KUH7 EXPRESSION TAG SEQADV 4E38 VAL B -12 UNP A5KUH7 EXPRESSION TAG SEQADV 4E38 ASP B -11 UNP A5KUH7 EXPRESSION TAG SEQADV 4E38 LEU B -10 UNP A5KUH7 EXPRESSION TAG SEQADV 4E38 GLY B -9 UNP A5KUH7 EXPRESSION TAG SEQADV 4E38 THR B -8 UNP A5KUH7 EXPRESSION TAG SEQADV 4E38 GLU B -7 UNP A5KUH7 EXPRESSION TAG SEQADV 4E38 ASN B -6 UNP A5KUH7 EXPRESSION TAG SEQADV 4E38 LEU B -5 UNP A5KUH7 EXPRESSION TAG SEQADV 4E38 TYR B -4 UNP A5KUH7 EXPRESSION TAG SEQADV 4E38 PHE B -3 UNP A5KUH7 EXPRESSION TAG SEQADV 4E38 GLN B -2 UNP A5KUH7 EXPRESSION TAG SEQADV 4E38 SER B -1 UNP A5KUH7 EXPRESSION TAG SEQADV 4E38 MET B 0 UNP A5KUH7 EXPRESSION TAG SEQADV 4E38 MET C -22 UNP A5KUH7 EXPRESSION TAG SEQADV 4E38 HIS C -21 UNP A5KUH7 EXPRESSION TAG SEQADV 4E38 HIS C -20 UNP A5KUH7 EXPRESSION TAG SEQADV 4E38 HIS C -19 UNP A5KUH7 EXPRESSION TAG SEQADV 4E38 HIS C -18 UNP A5KUH7 EXPRESSION TAG SEQADV 4E38 HIS C -17 UNP A5KUH7 EXPRESSION TAG SEQADV 4E38 HIS C -16 UNP A5KUH7 EXPRESSION TAG SEQADV 4E38 SER C -15 UNP A5KUH7 EXPRESSION TAG SEQADV 4E38 SER C -14 UNP A5KUH7 EXPRESSION TAG SEQADV 4E38 GLY C -13 UNP A5KUH7 EXPRESSION TAG SEQADV 4E38 VAL C -12 UNP A5KUH7 EXPRESSION TAG SEQADV 4E38 ASP C -11 UNP A5KUH7 EXPRESSION TAG SEQADV 4E38 LEU C -10 UNP A5KUH7 EXPRESSION TAG SEQADV 4E38 GLY C -9 UNP A5KUH7 EXPRESSION TAG SEQADV 4E38 THR C -8 UNP A5KUH7 EXPRESSION TAG SEQADV 4E38 GLU C -7 UNP A5KUH7 EXPRESSION TAG SEQADV 4E38 ASN C -6 UNP A5KUH7 EXPRESSION TAG SEQADV 4E38 LEU C -5 UNP A5KUH7 EXPRESSION TAG SEQADV 4E38 TYR C -4 UNP A5KUH7 EXPRESSION TAG SEQADV 4E38 PHE C -3 UNP A5KUH7 EXPRESSION TAG SEQADV 4E38 GLN C -2 UNP A5KUH7 EXPRESSION TAG SEQADV 4E38 SER C -1 UNP A5KUH7 EXPRESSION TAG SEQADV 4E38 MET C 0 UNP A5KUH7 EXPRESSION TAG SEQRES 1 A 232 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 232 GLY THR GLU ASN LEU TYR PHE GLN SER MET MET SER THR SEQRES 3 A 232 ILE ASN ASN GLN LEU LYS ALA LEU LYS VAL ILE PRO VAL SEQRES 4 A 232 ILE ALA ILE ASP ASN ALA GLU ASP ILE ILE PRO LEU GLY SEQRES 5 A 232 LYS VAL LEU ALA GLU ASN GLY LEU PRO ALA ALA GLU ILE SEQRES 6 A 232 THR PHE ARG SER ASP ALA ALA VAL GLU ALA ILE ARG LEU SEQRES 7 A 232 LEU ARG GLN ALA GLN PRO GLU MET LEU ILE GLY ALA GLY SEQRES 8 A 232 THR ILE LEU ASN GLY GLU GLN ALA LEU ALA ALA LYS GLU SEQRES 9 A 232 ALA GLY ALA THR PHE VAL VAL SER PRO GLY PHE ASN PRO SEQRES 10 A 232 ASN THR VAL ARG ALA CYS GLN GLU ILE GLY ILE ASP ILE SEQRES 11 A 232 VAL PRO GLY VAL ASN ASN PRO SER THR VAL GLU ALA ALA SEQRES 12 A 232 LEU GLU MET GLY LEU THR THR LEU LYS PHE PHE PRO ALA SEQRES 13 A 232 GLU ALA SER GLY GLY ILE SER MET VAL LYS SER LEU VAL SEQRES 14 A 232 GLY PRO TYR GLY ASP ILE ARG LEU MET PRO THR GLY GLY SEQRES 15 A 232 ILE THR PRO SER ASN ILE ASP ASN TYR LEU ALA ILE PRO SEQRES 16 A 232 GLN VAL LEU ALA CYS GLY GLY THR TRP MET VAL ASP LYS SEQRES 17 A 232 LYS LEU VAL THR ASN GLY GLU TRP ASP GLU ILE ALA ARG SEQRES 18 A 232 LEU THR ARG GLU ILE VAL GLU GLN VAL ASN PRO SEQRES 1 B 232 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 B 232 GLY THR GLU ASN LEU TYR PHE GLN SER MET MET SER THR SEQRES 3 B 232 ILE ASN ASN GLN LEU LYS ALA LEU LYS VAL ILE PRO VAL SEQRES 4 B 232 ILE ALA ILE ASP ASN ALA GLU ASP ILE ILE PRO LEU GLY SEQRES 5 B 232 LYS VAL LEU ALA GLU ASN GLY LEU PRO ALA ALA GLU ILE SEQRES 6 B 232 THR PHE ARG SER ASP ALA ALA VAL GLU ALA ILE ARG LEU SEQRES 7 B 232 LEU ARG GLN ALA GLN PRO GLU MET LEU ILE GLY ALA GLY SEQRES 8 B 232 THR ILE LEU ASN GLY GLU GLN ALA LEU ALA ALA LYS GLU SEQRES 9 B 232 ALA GLY ALA THR PHE VAL VAL SER PRO GLY PHE ASN PRO SEQRES 10 B 232 ASN THR VAL ARG ALA CYS GLN GLU ILE GLY ILE ASP ILE SEQRES 11 B 232 VAL PRO GLY VAL ASN ASN PRO SER THR VAL GLU ALA ALA SEQRES 12 B 232 LEU GLU MET GLY LEU THR THR LEU LYS PHE PHE PRO ALA SEQRES 13 B 232 GLU ALA SER GLY GLY ILE SER MET VAL LYS SER LEU VAL SEQRES 14 B 232 GLY PRO TYR GLY ASP ILE ARG LEU MET PRO THR GLY GLY SEQRES 15 B 232 ILE THR PRO SER ASN ILE ASP ASN TYR LEU ALA ILE PRO SEQRES 16 B 232 GLN VAL LEU ALA CYS GLY GLY THR TRP MET VAL ASP LYS SEQRES 17 B 232 LYS LEU VAL THR ASN GLY GLU TRP ASP GLU ILE ALA ARG SEQRES 18 B 232 LEU THR ARG GLU ILE VAL GLU GLN VAL ASN PRO SEQRES 1 C 232 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 C 232 GLY THR GLU ASN LEU TYR PHE GLN SER MET MET SER THR SEQRES 3 C 232 ILE ASN ASN GLN LEU LYS ALA LEU LYS VAL ILE PRO VAL SEQRES 4 C 232 ILE ALA ILE ASP ASN ALA GLU ASP ILE ILE PRO LEU GLY SEQRES 5 C 232 LYS VAL LEU ALA GLU ASN GLY LEU PRO ALA ALA GLU ILE SEQRES 6 C 232 THR PHE ARG SER ASP ALA ALA VAL GLU ALA ILE ARG LEU SEQRES 7 C 232 LEU ARG GLN ALA GLN PRO GLU MET LEU ILE GLY ALA GLY SEQRES 8 C 232 THR ILE LEU ASN GLY GLU GLN ALA LEU ALA ALA LYS GLU SEQRES 9 C 232 ALA GLY ALA THR PHE VAL VAL SER PRO GLY PHE ASN PRO SEQRES 10 C 232 ASN THR VAL ARG ALA CYS GLN GLU ILE GLY ILE ASP ILE SEQRES 11 C 232 VAL PRO GLY VAL ASN ASN PRO SER THR VAL GLU ALA ALA SEQRES 12 C 232 LEU GLU MET GLY LEU THR THR LEU LYS PHE PHE PRO ALA SEQRES 13 C 232 GLU ALA SER GLY GLY ILE SER MET VAL LYS SER LEU VAL SEQRES 14 C 232 GLY PRO TYR GLY ASP ILE ARG LEU MET PRO THR GLY GLY SEQRES 15 C 232 ILE THR PRO SER ASN ILE ASP ASN TYR LEU ALA ILE PRO SEQRES 16 C 232 GLN VAL LEU ALA CYS GLY GLY THR TRP MET VAL ASP LYS SEQRES 17 C 232 LYS LEU VAL THR ASN GLY GLU TRP ASP GLU ILE ALA ARG SEQRES 18 C 232 LEU THR ARG GLU ILE VAL GLU GLN VAL ASN PRO HET CL A 301 1 HET CL A 302 1 HET CL A 303 1 HET CL B 301 1 HET CL B 302 1 HET CL C 301 1 HET CL C 302 1 HETNAM CL CHLORIDE ION FORMUL 4 CL 7(CL 1-) FORMUL 11 HOH *592(H2 O) HELIX 1 1 MET A 0 LYS A 12 1 13 HELIX 2 2 ASN A 21 GLU A 23 5 3 HELIX 3 3 ASP A 24 ASN A 35 1 12 HELIX 4 4 ALA A 48 GLN A 60 1 13 HELIX 5 5 ASN A 72 GLY A 83 1 12 HELIX 6 6 ASN A 93 GLY A 104 1 12 HELIX 7 7 ASN A 113 MET A 123 1 11 HELIX 8 8 GLY A 137 GLY A 147 1 11 HELIX 9 9 ASN A 164 ALA A 170 1 7 HELIX 10 10 THR A 180 VAL A 183 5 4 HELIX 11 11 ASP A 184 ASN A 190 1 7 HELIX 12 12 GLU A 192 ASN A 208 1 17 HELIX 13 13 MET B 0 LYS B 12 1 13 HELIX 14 14 ASN B 21 GLU B 23 5 3 HELIX 15 15 ASP B 24 ASN B 35 1 12 HELIX 16 16 ASP B 47 GLN B 60 1 14 HELIX 17 17 ASN B 72 GLY B 83 1 12 HELIX 18 18 ASN B 93 GLY B 104 1 12 HELIX 19 19 ASN B 113 MET B 123 1 11 HELIX 20 20 GLY B 137 GLY B 147 1 11 HELIX 21 21 ASN B 164 ALA B 170 1 7 HELIX 22 22 THR B 180 VAL B 183 5 4 HELIX 23 23 ASP B 184 ASN B 190 1 7 HELIX 24 24 GLU B 192 ASN B 208 1 17 HELIX 25 25 ASP C -11 LYS C 12 1 24 HELIX 26 26 ASN C 21 GLU C 23 5 3 HELIX 27 27 ASP C 24 ASN C 35 1 12 HELIX 28 28 ALA C 48 GLN C 60 1 13 HELIX 29 29 ASN C 72 GLY C 83 1 12 HELIX 30 30 ASN C 93 GLY C 104 1 12 HELIX 31 31 ASN C 113 MET C 123 1 11 HELIX 32 32 GLY C 137 GLY C 147 1 11 HELIX 33 33 ASN C 164 ALA C 170 1 7 HELIX 34 34 THR C 180 VAL C 183 5 4 HELIX 35 35 ASP C 184 ASN C 190 1 7 HELIX 36 36 GLU C 192 ASN C 208 1 17 SHEET 1 A 6 ASP A 106 VAL A 108 0 SHEET 2 A 6 PHE A 86 VAL A 88 1 N VAL A 87 O VAL A 108 SHEET 3 A 6 LEU A 64 GLY A 68 1 N ALA A 67 O VAL A 88 SHEET 4 A 6 ALA A 39 THR A 43 1 N ALA A 40 O GLY A 66 SHEET 5 A 6 VAL A 13 ILE A 17 1 N ILE A 17 O GLU A 41 SHEET 6 A 6 CYS A 177 GLY A 179 1 O CYS A 177 N ILE A 14 SHEET 1 B 3 GLY A 110 VAL A 111 0 SHEET 2 B 3 THR A 127 PHE A 130 1 O LYS A 129 N VAL A 111 SHEET 3 B 3 ARG A 153 PRO A 156 1 O ARG A 153 N LEU A 128 SHEET 1 C 8 ARG B 153 PRO B 156 0 SHEET 2 C 8 THR B 127 PHE B 130 1 N LEU B 128 O ARG B 153 SHEET 3 C 8 ASP B 106 VAL B 111 1 N VAL B 111 O LYS B 129 SHEET 4 C 8 PHE B 86 SER B 89 1 N VAL B 87 O VAL B 108 SHEET 5 C 8 LEU B 64 GLY B 68 1 N ALA B 67 O VAL B 88 SHEET 6 C 8 ALA B 39 THR B 43 1 N ILE B 42 O GLY B 66 SHEET 7 C 8 VAL B 13 ILE B 17 1 N PRO B 15 O GLU B 41 SHEET 8 C 8 CYS B 177 GLY B 179 1 O CYS B 177 N ILE B 14 SHEET 1 D 8 ARG C 153 PRO C 156 0 SHEET 2 D 8 THR C 127 PHE C 130 1 N LEU C 128 O ARG C 153 SHEET 3 D 8 ASP C 106 VAL C 111 1 N VAL C 111 O LYS C 129 SHEET 4 D 8 PHE C 86 SER C 89 1 N VAL C 87 O VAL C 108 SHEET 5 D 8 LEU C 64 GLY C 68 1 N ALA C 67 O VAL C 88 SHEET 6 D 8 ALA C 39 THR C 43 1 N ALA C 40 O GLY C 66 SHEET 7 D 8 VAL C 13 ILE C 17 1 N ILE C 17 O GLU C 41 SHEET 8 D 8 CYS C 177 GLY C 179 1 O CYS C 177 N ILE C 14 CISPEP 1 PHE A 131 PRO A 132 0 -5.96 CISPEP 2 PHE B 131 PRO B 132 0 -5.95 CISPEP 3 PHE C 131 PRO C 132 0 -8.11 SITE 1 AC1 6 THR A 69 SER A 89 PRO A 90 LYS A 129 SITE 2 AC1 6 HOH A 437 HOH A 522 SITE 1 AC2 3 ASN A 113 ASN B 113 ASN C 113 SITE 1 AC3 7 PRO A 132 GLU A 134 ALA A 135 GLY A 158 SITE 2 AC3 7 SER C 144 HOH C 470 HOH C 618 SITE 1 AC4 6 THR B 69 VAL B 88 SER B 89 PRO B 90 SITE 2 AC4 6 LYS B 129 HOH B 540 SITE 1 AC5 6 HOH A 420 HOH A 440 PRO B 132 GLU B 134 SITE 2 AC5 6 ALA B 135 GLY B 158 SITE 1 AC6 4 THR C 69 SER C 89 PRO C 90 LYS C 129 SITE 1 AC7 6 HOH B 426 HOH B 541 PRO C 132 GLU C 134 SITE 2 AC7 6 ALA C 135 GLY C 158 CRYST1 75.503 80.960 123.600 90.00 90.00 90.00 P 21 21 21 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013245 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012352 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008091 0.00000