HEADER HYDROLASE/HYDROLASE INHIBITOR 09-MAR-12 4E3I TITLE CRYSTAL STRUCTURE OF AMPC BETA-LACTAMASE IN COMPLEX WITH A DESIGNED 3- TITLE 2 CARBOXYL BENZYL SULFONAMIDE BORONIC ACID INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-LACTAMASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: CEPHALOSPORINASE; COMPND 5 EC: 3.5.2.6; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: AMPA, AMPC, B4150, JW4111; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: JM109; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: POGO295 KEYWDS AMPC BETA-LACTAMASE, CLASS C, HYDROLASE, CEPHALOSPORINASE, HYDROLASE- KEYWDS 2 HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR O.EIDAM,B.K.SHOICHET REVDAT 3 13-SEP-23 4E3I 1 REMARK LINK REVDAT 2 07-NOV-12 4E3I 1 JRNL REVDAT 1 26-SEP-12 4E3I 0 JRNL AUTH O.EIDAM,C.ROMAGNOLI,G.DALMASSO,S.BARELIER,E.CASELLI, JRNL AUTH 2 R.BONNET,B.K.SHOICHET,F.PRATI JRNL TITL FRAGMENT-GUIDED DESIGN OF SUBNANOMOLAR BETA-LACTAMASE JRNL TITL 2 INHIBITORS ACTIVE IN VIVO. JRNL REF PROC.NATL.ACAD.SCI.USA V. 109 17448 2012 JRNL REFN ISSN 0027-8424 JRNL PMID 23043117 JRNL DOI 10.1073/PNAS.1208337109 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.7.1_743 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.55 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.990 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.7 REMARK 3 NUMBER OF REFLECTIONS : 98110 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.165 REMARK 3 R VALUE (WORKING SET) : 0.164 REMARK 3 FREE R VALUE : 0.189 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.670 REMARK 3 FREE R VALUE TEST SET COUNT : 3603 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.5499 - 4.7336 0.91 3583 135 0.1710 0.2025 REMARK 3 2 4.7336 - 3.7596 0.96 3722 173 0.1263 0.1505 REMARK 3 3 3.7596 - 3.2851 0.94 3645 133 0.1382 0.1461 REMARK 3 4 3.2851 - 2.9850 0.95 3672 151 0.1623 0.1769 REMARK 3 5 2.9850 - 2.7713 0.96 3662 158 0.1685 0.1799 REMARK 3 6 2.7713 - 2.6080 0.96 3659 153 0.1696 0.1829 REMARK 3 7 2.6080 - 2.4774 0.96 3706 145 0.1650 0.2134 REMARK 3 8 2.4774 - 2.3696 0.95 3639 137 0.1590 0.1897 REMARK 3 9 2.3696 - 2.2785 0.95 3639 129 0.1551 0.1927 REMARK 3 10 2.2785 - 2.1999 0.95 3681 128 0.1533 0.1916 REMARK 3 11 2.1999 - 2.1311 0.95 3617 162 0.1550 0.1906 REMARK 3 12 2.1311 - 2.0702 0.95 3646 156 0.1560 0.2009 REMARK 3 13 2.0702 - 2.0157 0.95 3634 123 0.1587 0.1950 REMARK 3 14 2.0157 - 1.9665 0.95 3672 145 0.1615 0.2074 REMARK 3 15 1.9665 - 1.9218 0.95 3640 129 0.1619 0.1930 REMARK 3 16 1.9218 - 1.8809 0.95 3661 98 0.1698 0.1985 REMARK 3 17 1.8809 - 1.8433 0.95 3650 125 0.1804 0.1792 REMARK 3 18 1.8433 - 1.8085 0.95 3593 139 0.1813 0.2165 REMARK 3 19 1.8085 - 1.7763 0.95 3613 147 0.1881 0.2313 REMARK 3 20 1.7763 - 1.7461 0.95 3652 141 0.1984 0.2066 REMARK 3 21 1.7461 - 1.7180 0.94 3611 100 0.2122 0.2284 REMARK 3 22 1.7180 - 1.6916 0.94 3633 101 0.2311 0.2947 REMARK 3 23 1.6916 - 1.6667 0.94 3583 150 0.2496 0.2619 REMARK 3 24 1.6667 - 1.6432 0.94 3522 146 0.2622 0.3067 REMARK 3 25 1.6432 - 1.6210 0.94 3646 152 0.2659 0.2641 REMARK 3 26 1.6210 - 1.6000 0.93 3526 147 0.2910 0.3394 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.95 REMARK 3 K_SOL : 0.40 REMARK 3 B_SOL : 54.47 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.440 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.580 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.28 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.76730 REMARK 3 B22 (A**2) : -2.23510 REMARK 3 B33 (A**2) : -1.53210 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 3.28830 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 5888 REMARK 3 ANGLE : 1.313 8106 REMARK 3 CHIRALITY : 0.090 892 REMARK 3 PLANARITY : 0.007 1038 REMARK 3 DIHEDRAL : 14.108 2147 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 4:90) REMARK 3 ORIGIN FOR THE GROUP (A): 24.7943 -7.8257 22.5650 REMARK 3 T TENSOR REMARK 3 T11: 0.1692 T22: 0.0858 REMARK 3 T33: 0.0945 T12: -0.0305 REMARK 3 T13: 0.0028 T23: -0.0167 REMARK 3 L TENSOR REMARK 3 L11: 1.5907 L22: 1.0041 REMARK 3 L33: 1.0182 L12: 0.4994 REMARK 3 L13: -0.2643 L23: -0.0136 REMARK 3 S TENSOR REMARK 3 S11: 0.0228 S12: -0.1164 S13: -0.0209 REMARK 3 S21: 0.1193 S22: -0.0453 S23: 0.0690 REMARK 3 S31: 0.2335 S32: -0.0747 S33: 0.0193 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 91:182) REMARK 3 ORIGIN FOR THE GROUP (A): 37.8553 8.3277 7.3280 REMARK 3 T TENSOR REMARK 3 T11: 0.1323 T22: 0.1341 REMARK 3 T33: 0.1336 T12: -0.0167 REMARK 3 T13: 0.0037 T23: 0.0068 REMARK 3 L TENSOR REMARK 3 L11: 1.0567 L22: 2.1736 REMARK 3 L33: 1.2742 L12: -0.0890 REMARK 3 L13: -0.3581 L23: -0.5249 REMARK 3 S TENSOR REMARK 3 S11: 0.0177 S12: 0.1598 S13: 0.0926 REMARK 3 S21: -0.2693 S22: -0.0094 S23: -0.0989 REMARK 3 S31: -0.0224 S32: 0.0402 S33: -0.0100 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 183:361) REMARK 3 ORIGIN FOR THE GROUP (A): 30.6966 -1.6961 22.7364 REMARK 3 T TENSOR REMARK 3 T11: 0.1259 T22: 0.0900 REMARK 3 T33: 0.1054 T12: 0.0017 REMARK 3 T13: -0.0087 T23: -0.0020 REMARK 3 L TENSOR REMARK 3 L11: 1.2083 L22: 1.1600 REMARK 3 L33: 1.1010 L12: 0.5975 REMARK 3 L13: -0.0965 L23: 0.1143 REMARK 3 S TENSOR REMARK 3 S11: 0.0272 S12: -0.1357 S13: 0.0137 REMARK 3 S21: 0.1595 S22: -0.0510 S23: -0.0410 REMARK 3 S31: 0.1106 S32: 0.0504 S33: 0.0234 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN B AND RESID 5:83) REMARK 3 ORIGIN FOR THE GROUP (A): 79.0882 -10.4075 24.0560 REMARK 3 T TENSOR REMARK 3 T11: 0.1622 T22: 0.3428 REMARK 3 T33: 0.1455 T12: 0.0883 REMARK 3 T13: 0.0046 T23: 0.0049 REMARK 3 L TENSOR REMARK 3 L11: 1.2623 L22: 1.3081 REMARK 3 L33: 1.6381 L12: -0.2608 REMARK 3 L13: 0.2573 L23: -0.1173 REMARK 3 S TENSOR REMARK 3 S11: -0.1783 S12: -0.1018 S13: -0.2188 REMARK 3 S21: 0.0177 S22: 0.1541 S23: -0.1707 REMARK 3 S31: 0.4591 S32: 0.7232 S33: -0.0310 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN B AND RESID 84:155) REMARK 3 ORIGIN FOR THE GROUP (A): 64.8625 15.8192 35.1772 REMARK 3 T TENSOR REMARK 3 T11: 0.1953 T22: 0.1681 REMARK 3 T33: 0.1427 T12: -0.0656 REMARK 3 T13: 0.0076 T23: -0.0227 REMARK 3 L TENSOR REMARK 3 L11: 0.9615 L22: 1.3200 REMARK 3 L33: 1.8957 L12: 0.3433 REMARK 3 L13: -0.1900 L23: 0.2017 REMARK 3 S TENSOR REMARK 3 S11: 0.0232 S12: -0.1268 S13: 0.0837 REMARK 3 S21: 0.2188 S22: 0.0597 S23: -0.0280 REMARK 3 S31: -0.3051 S32: 0.2028 S33: -0.0799 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN B AND RESID 156:361) REMARK 3 ORIGIN FOR THE GROUP (A): 70.7748 -2.6832 25.4185 REMARK 3 T TENSOR REMARK 3 T11: 0.0859 T22: 0.1814 REMARK 3 T33: 0.1228 T12: -0.0265 REMARK 3 T13: -0.0066 T23: 0.0002 REMARK 3 L TENSOR REMARK 3 L11: 0.8842 L22: 1.2433 REMARK 3 L33: 2.0932 L12: -0.4212 REMARK 3 L13: -0.3699 L23: 0.1311 REMARK 3 S TENSOR REMARK 3 S11: -0.0546 S12: -0.0598 S13: -0.0506 REMARK 3 S21: -0.0227 S22: 0.0688 S23: -0.0520 REMARK 3 S31: 0.1742 S32: 0.3028 S33: 0.0002 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4E3I COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-MAR-12. REMARK 100 THE DEPOSITION ID IS D_1000071122. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-JUN-11 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : 8.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.11587 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 98113 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 29.545 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.5 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.03800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.6500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.54000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.990 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 1KE4 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.7 M POTASSIUM PHOSPHATE, PH 8.8, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 59.23000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.57000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 59.23000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 38.57000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA B 4 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 7 OE1 NE2 REMARK 470 GLU A 21 CD OE1 OE2 REMARK 470 GLN A 22 CG CD OE1 NE2 REMARK 470 LYS A 24 CE NZ REMARK 470 LYS A 37 CG CD CE NZ REMARK 470 LYS A 99 CG CD CE NZ REMARK 470 GLU A 124 CD OE1 OE2 REMARK 470 LYS A 126 CE NZ REMARK 470 GLU A 196 OE1 OE2 REMARK 470 ARG A 204 NE CZ NH1 NH2 REMARK 470 GLU A 205 OE1 OE2 REMARK 470 LYS A 207 CG CD CE NZ REMARK 470 LYS A 239 CE NZ REMARK 470 LYS A 246 CG CD CE NZ REMARK 470 LYS A 299 CE NZ REMARK 470 GLU A 331 CD OE1 OE2 REMARK 470 GLN B 7 CG CD OE1 NE2 REMARK 470 GLU B 21 CD OE1 OE2 REMARK 470 LYS B 24 CE NZ REMARK 470 LYS B 37 CD CE NZ REMARK 470 LYS B 50 CG CD CE NZ REMARK 470 LYS B 51 CD CE NZ REMARK 470 GLN B 52 CD OE1 NE2 REMARK 470 GLN B 56 OE1 NE2 REMARK 470 GLN B 57 CG CD OE1 NE2 REMARK 470 ASP B 123 CG OD1 OD2 REMARK 470 LYS B 126 CG CD CE NZ REMARK 470 ARG B 204 CZ NH1 NH2 REMARK 470 GLU B 205 CG CD OE1 OE2 REMARK 470 LYS B 207 CE NZ REMARK 470 GLU B 228 OE1 OE2 REMARK 470 ARG B 232 NH1 NH2 REMARK 470 LYS B 246 CD CE NZ REMARK 470 GLN B 253 OE1 NE2 REMARK 470 LYS B 299 CG CD CE NZ REMARK 470 GLU B 331 OE1 OE2 REMARK 470 GLU B 333 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 154 -65.22 -90.57 REMARK 500 VAL A 178 -59.99 -121.21 REMARK 500 TYR A 221 21.68 -161.71 REMARK 500 ASN A 341 42.83 -94.18 REMARK 500 LYS B 126 -60.93 -130.93 REMARK 500 SER B 154 -65.99 -90.12 REMARK 500 VAL B 178 -60.17 -123.41 REMARK 500 TYR B 221 24.93 -160.79 REMARK 500 ASN B 341 44.02 -95.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 0N3 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 0N3 B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 403 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4E3J RELATED DB: PDB REMARK 900 RELATED ID: 4E3K RELATED DB: PDB REMARK 900 RELATED ID: 4E3L RELATED DB: PDB REMARK 900 RELATED ID: 4E3M RELATED DB: PDB REMARK 900 RELATED ID: 4E3N RELATED DB: PDB REMARK 900 RELATED ID: 4E3O RELATED DB: PDB DBREF 4E3I A 4 361 UNP P00811 AMPC_ECOLI 20 377 DBREF 4E3I B 4 361 UNP P00811 AMPC_ECOLI 20 377 SEQRES 1 A 358 ALA PRO GLN GLN ILE ASN ASP ILE VAL HIS ARG THR ILE SEQRES 2 A 358 THR PRO LEU ILE GLU GLN GLN LYS ILE PRO GLY MET ALA SEQRES 3 A 358 VAL ALA VAL ILE TYR GLN GLY LYS PRO TYR TYR PHE THR SEQRES 4 A 358 TRP GLY TYR ALA ASP ILE ALA LYS LYS GLN PRO VAL THR SEQRES 5 A 358 GLN GLN THR LEU PHE GLU LEU GLY SER VAL SER LYS THR SEQRES 6 A 358 PHE THR GLY VAL LEU GLY GLY ASP ALA ILE ALA ARG GLY SEQRES 7 A 358 GLU ILE LYS LEU SER ASP PRO THR THR LYS TYR TRP PRO SEQRES 8 A 358 GLU LEU THR ALA LYS GLN TRP ASN GLY ILE THR LEU LEU SEQRES 9 A 358 HIS LEU ALA THR TYR THR ALA GLY GLY LEU PRO LEU GLN SEQRES 10 A 358 VAL PRO ASP GLU VAL LYS SER SER SER ASP LEU LEU ARG SEQRES 11 A 358 PHE TYR GLN ASN TRP GLN PRO ALA TRP ALA PRO GLY THR SEQRES 12 A 358 GLN ARG LEU TYR ALA ASN SER SER ILE GLY LEU PHE GLY SEQRES 13 A 358 ALA LEU ALA VAL LYS PRO SER GLY LEU SER PHE GLU GLN SEQRES 14 A 358 ALA MET GLN THR ARG VAL PHE GLN PRO LEU LYS LEU ASN SEQRES 15 A 358 HIS THR TRP ILE ASN VAL PRO PRO ALA GLU GLU LYS ASN SEQRES 16 A 358 TYR ALA TRP GLY TYR ARG GLU GLY LYS ALA VAL HIS VAL SEQRES 17 A 358 SER PRO GLY ALA LEU ASP ALA GLU ALA TYR GLY VAL LYS SEQRES 18 A 358 SER THR ILE GLU ASP MET ALA ARG TRP VAL GLN SER ASN SEQRES 19 A 358 LEU LYS PRO LEU ASP ILE ASN GLU LYS THR LEU GLN GLN SEQRES 20 A 358 GLY ILE GLN LEU ALA GLN SER ARG TYR TRP GLN THR GLY SEQRES 21 A 358 ASP MET TYR GLN GLY LEU GLY TRP GLU MET LEU ASP TRP SEQRES 22 A 358 PRO VAL ASN PRO ASP SER ILE ILE ASN GLY SER ASP ASN SEQRES 23 A 358 LYS ILE ALA LEU ALA ALA ARG PRO VAL LYS ALA ILE THR SEQRES 24 A 358 PRO PRO THR PRO ALA VAL ARG ALA SER TRP VAL HIS LYS SEQRES 25 A 358 THR GLY ALA THR GLY GLY PHE GLY SER TYR VAL ALA PHE SEQRES 26 A 358 ILE PRO GLU LYS GLU LEU GLY ILE VAL MET LEU ALA ASN SEQRES 27 A 358 LYS ASN TYR PRO ASN PRO ALA ARG VAL ASP ALA ALA TRP SEQRES 28 A 358 GLN ILE LEU ASN ALA LEU GLN SEQRES 1 B 358 ALA PRO GLN GLN ILE ASN ASP ILE VAL HIS ARG THR ILE SEQRES 2 B 358 THR PRO LEU ILE GLU GLN GLN LYS ILE PRO GLY MET ALA SEQRES 3 B 358 VAL ALA VAL ILE TYR GLN GLY LYS PRO TYR TYR PHE THR SEQRES 4 B 358 TRP GLY TYR ALA ASP ILE ALA LYS LYS GLN PRO VAL THR SEQRES 5 B 358 GLN GLN THR LEU PHE GLU LEU GLY SER VAL SER LYS THR SEQRES 6 B 358 PHE THR GLY VAL LEU GLY GLY ASP ALA ILE ALA ARG GLY SEQRES 7 B 358 GLU ILE LYS LEU SER ASP PRO THR THR LYS TYR TRP PRO SEQRES 8 B 358 GLU LEU THR ALA LYS GLN TRP ASN GLY ILE THR LEU LEU SEQRES 9 B 358 HIS LEU ALA THR TYR THR ALA GLY GLY LEU PRO LEU GLN SEQRES 10 B 358 VAL PRO ASP GLU VAL LYS SER SER SER ASP LEU LEU ARG SEQRES 11 B 358 PHE TYR GLN ASN TRP GLN PRO ALA TRP ALA PRO GLY THR SEQRES 12 B 358 GLN ARG LEU TYR ALA ASN SER SER ILE GLY LEU PHE GLY SEQRES 13 B 358 ALA LEU ALA VAL LYS PRO SER GLY LEU SER PHE GLU GLN SEQRES 14 B 358 ALA MET GLN THR ARG VAL PHE GLN PRO LEU LYS LEU ASN SEQRES 15 B 358 HIS THR TRP ILE ASN VAL PRO PRO ALA GLU GLU LYS ASN SEQRES 16 B 358 TYR ALA TRP GLY TYR ARG GLU GLY LYS ALA VAL HIS VAL SEQRES 17 B 358 SER PRO GLY ALA LEU ASP ALA GLU ALA TYR GLY VAL LYS SEQRES 18 B 358 SER THR ILE GLU ASP MET ALA ARG TRP VAL GLN SER ASN SEQRES 19 B 358 LEU LYS PRO LEU ASP ILE ASN GLU LYS THR LEU GLN GLN SEQRES 20 B 358 GLY ILE GLN LEU ALA GLN SER ARG TYR TRP GLN THR GLY SEQRES 21 B 358 ASP MET TYR GLN GLY LEU GLY TRP GLU MET LEU ASP TRP SEQRES 22 B 358 PRO VAL ASN PRO ASP SER ILE ILE ASN GLY SER ASP ASN SEQRES 23 B 358 LYS ILE ALA LEU ALA ALA ARG PRO VAL LYS ALA ILE THR SEQRES 24 B 358 PRO PRO THR PRO ALA VAL ARG ALA SER TRP VAL HIS LYS SEQRES 25 B 358 THR GLY ALA THR GLY GLY PHE GLY SER TYR VAL ALA PHE SEQRES 26 B 358 ILE PRO GLU LYS GLU LEU GLY ILE VAL MET LEU ALA ASN SEQRES 27 B 358 LYS ASN TYR PRO ASN PRO ALA ARG VAL ASP ALA ALA TRP SEQRES 28 B 358 GLN ILE LEU ASN ALA LEU GLN HET 0N3 A 401 18 HET PO4 A 402 5 HET PO4 A 403 5 HET PO4 A 404 5 HET 0N3 B 401 18 HET PO4 B 402 5 HET PO4 B 403 5 HETNAM 0N3 3-({[(DIHYDROXYBORANYL)METHYL]SULFAMOYL}METHYL)BENZOIC HETNAM 2 0N3 ACID HETNAM PO4 PHOSPHATE ION FORMUL 3 0N3 2(C9 H12 B N O6 S) FORMUL 4 PO4 5(O4 P 3-) FORMUL 10 HOH *633(H2 O) HELIX 1 1 PRO A 5 LYS A 24 1 20 HELIX 2 2 VAL A 65 ARG A 80 1 16 HELIX 3 3 PRO A 88 TRP A 93 1 6 HELIX 4 4 ALA A 98 ASN A 102 5 5 HELIX 5 5 THR A 105 THR A 111 1 7 HELIX 6 6 SER A 127 TRP A 138 1 12 HELIX 7 7 ALA A 151 VAL A 163 1 13 HELIX 8 8 SER A 169 VAL A 178 1 10 HELIX 9 9 PRO A 192 TYR A 199 5 8 HELIX 10 10 LEU A 216 GLY A 222 1 7 HELIX 11 11 THR A 226 LYS A 239 1 14 HELIX 12 12 PRO A 240 ILE A 243 5 4 HELIX 13 13 GLU A 245 GLN A 256 1 12 HELIX 14 14 ASN A 279 SER A 287 1 9 HELIX 15 15 ASP A 288 LEU A 293 1 6 HELIX 16 16 PRO A 330 GLU A 333 5 4 HELIX 17 17 PRO A 345 GLN A 361 1 17 HELIX 18 18 GLN B 6 GLN B 23 1 18 HELIX 19 19 VAL B 65 ARG B 80 1 16 HELIX 20 20 PRO B 88 TRP B 93 1 6 HELIX 21 21 ALA B 98 ASN B 102 5 5 HELIX 22 22 THR B 105 THR B 111 1 7 HELIX 23 23 SER B 127 TRP B 138 1 12 HELIX 24 24 ALA B 151 VAL B 163 1 13 HELIX 25 25 SER B 169 VAL B 178 1 10 HELIX 26 26 PRO B 192 TYR B 199 5 8 HELIX 27 27 LEU B 216 GLY B 222 1 7 HELIX 28 28 THR B 226 LYS B 239 1 14 HELIX 29 29 PRO B 240 ILE B 243 5 4 HELIX 30 30 GLU B 245 GLN B 256 1 12 HELIX 31 31 ASN B 279 SER B 287 1 9 HELIX 32 32 ASP B 288 LEU B 293 1 6 HELIX 33 33 PRO B 330 GLU B 333 5 4 HELIX 34 34 PRO B 345 GLN B 361 1 17 SHEET 1 A10 GLN A 52 PRO A 53 0 SHEET 2 A10 LYS A 37 ASP A 47 -1 N ALA A 46 O GLN A 52 SHEET 3 A10 GLY A 27 TYR A 34 -1 N VAL A 30 O PHE A 41 SHEET 4 A10 LEU A 334 ALA A 340 -1 O LEU A 339 N ALA A 29 SHEET 5 A10 PHE A 322 ILE A 329 -1 N ILE A 329 O LEU A 334 SHEET 6 A10 SER A 311 THR A 319 -1 N GLY A 317 O SER A 324 SHEET 7 A10 GLU A 272 ASP A 275 -1 N LEU A 274 O TRP A 312 SHEET 8 A10 MET A 265 GLN A 267 -1 N TYR A 266 O MET A 273 SHEET 9 A10 ARG A 258 THR A 262 -1 N TYR A 259 O GLN A 267 SHEET 10 A10 LYS A 299 THR A 305 -1 O LYS A 299 N GLN A 261 SHEET 1 B 3 PHE A 60 GLU A 61 0 SHEET 2 B 3 LYS A 224 SER A 225 -1 O SER A 225 N PHE A 60 SHEET 3 B 3 THR A 187 TRP A 188 -1 N TRP A 188 O LYS A 224 SHEET 1 C 2 GLN A 147 ARG A 148 0 SHEET 2 C 2 ARG A 296 PRO A 297 -1 O ARG A 296 N ARG A 148 SHEET 1 D 2 GLY A 202 ARG A 204 0 SHEET 2 D 2 LYS A 207 VAL A 209 -1 O VAL A 209 N GLY A 202 SHEET 1 E10 GLN B 52 PRO B 53 0 SHEET 2 E10 LYS B 37 ASP B 47 -1 N ALA B 46 O GLN B 52 SHEET 3 E10 GLY B 27 TYR B 34 -1 N TYR B 34 O LYS B 37 SHEET 4 E10 LEU B 334 ALA B 340 -1 O GLY B 335 N ILE B 33 SHEET 5 E10 PHE B 322 ILE B 329 -1 N ALA B 327 O ILE B 336 SHEET 6 E10 SER B 311 THR B 319 -1 N GLY B 317 O SER B 324 SHEET 7 E10 GLU B 272 ASP B 275 -1 N GLU B 272 O HIS B 314 SHEET 8 E10 MET B 265 GLN B 267 -1 N TYR B 266 O MET B 273 SHEET 9 E10 ARG B 258 THR B 262 -1 N THR B 262 O MET B 265 SHEET 10 E10 LYS B 299 THR B 305 -1 O THR B 305 N ARG B 258 SHEET 1 F 2 PHE B 60 GLU B 61 0 SHEET 2 F 2 LYS B 224 SER B 225 -1 O SER B 225 N PHE B 60 SHEET 1 G 2 GLN B 147 ARG B 148 0 SHEET 2 G 2 ARG B 296 PRO B 297 -1 O ARG B 296 N ARG B 148 SHEET 1 H 2 GLY B 202 ARG B 204 0 SHEET 2 H 2 LYS B 207 VAL B 209 -1 O VAL B 209 N GLY B 202 LINK OG SER A 64 B03 0N3 A 401 1555 1555 1.44 LINK OG SER B 64 B03 0N3 B 401 1555 1555 1.45 CISPEP 1 TRP A 276 PRO A 277 0 4.86 CISPEP 2 THR A 302 PRO A 303 0 -2.13 CISPEP 3 TRP B 276 PRO B 277 0 6.12 CISPEP 4 THR B 302 PRO B 303 0 0.41 SITE 1 AC1 15 SER A 64 GLN A 120 TYR A 150 ASN A 152 SITE 2 AC1 15 VAL A 211 SER A 212 TYR A 221 GLY A 317 SITE 3 AC1 15 ALA A 318 THR A 319 GLY A 320 PO4 A 404 SITE 4 AC1 15 HOH A 504 HOH A 556 HOH A 826 SITE 1 AC2 3 TYR A 45 ILE A 48 HOH A 716 SITE 1 AC3 5 PRO A 140 ALA A 141 TRP A 142 ALA A 143 SITE 2 AC3 5 HOH A 715 SITE 1 AC4 4 ASN A 289 LEU A 293 0N3 A 401 HOH A 638 SITE 1 AC5 15 SER B 64 GLN B 120 TYR B 150 ASN B 152 SITE 2 AC5 15 VAL B 211 SER B 212 TYR B 221 GLY B 317 SITE 3 AC5 15 ALA B 318 THR B 319 GLY B 320 PO4 B 402 SITE 4 AC5 15 HOH B 547 HOH B 561 HOH B 716 SITE 1 AC6 5 TYR B 150 ASN B 289 LEU B 293 0N3 B 401 SITE 2 AC6 5 HOH B 642 SITE 1 AC7 5 ARG A 133 HIS A 186 HOH A 615 HOH A 659 SITE 2 AC7 5 LYS B 290 CRYST1 118.460 77.140 97.750 90.00 116.67 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008442 0.000000 0.004241 0.00000 SCALE2 0.000000 0.012963 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011448 0.00000