HEADER HYDROLASE 10-MAR-12 4E3T TITLE ROUND 18 ARYLESTERASE VARIANT OF PHOSPHOTRIESTERASE WITH BOUND TITLE 2 TRANSITION STATE ANALOG COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHOTRIESTERASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.1.8.1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BREVUNDIMONAS DIMINUTA; SOURCE 3 ORGANISM_TAXID: 293; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PHOSPHOTRIESTERASE, ALPHA/BETA HYDROLASE, ARYLESTERASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR N.TOKURIKI,C.J.JACKSON,D.S.TAWFIK REVDAT 2 08-NOV-23 4E3T 1 REMARK LINK REVDAT 1 23-JAN-13 4E3T 0 JRNL AUTH N.TOKURIKI,C.J.JACKSON,L.AFRIAT-JURNOU,K.T.WYGANOWSKI, JRNL AUTH 2 R.TANG,D.S.TAWFIK JRNL TITL DIMINISHING RETURNS AND TRADEOFFS CONSTRAIN THE LABORATORY JRNL TITL 2 OPTIMIZATION OF AN ENZYME JRNL REF NAT COMMUN V. 3 1257 2012 JRNL REFN ESSN 2041-1723 JRNL PMID 23212386 JRNL DOI 10.1038/NCOMMS2246 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.1_743) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.58 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 75264 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.206 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 3988 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.5804 - 5.0026 0.99 2912 132 0.2015 0.2091 REMARK 3 2 5.0026 - 3.9738 0.99 2781 136 0.1357 0.1696 REMARK 3 3 3.9738 - 3.4723 1.00 2745 141 0.1491 0.1527 REMARK 3 4 3.4723 - 3.1552 1.00 2705 155 0.1607 0.2214 REMARK 3 5 3.1552 - 2.9293 1.00 2719 152 0.1623 0.2027 REMARK 3 6 2.9293 - 2.7567 1.00 2700 138 0.1552 0.1700 REMARK 3 7 2.7567 - 2.6188 1.00 2723 124 0.1537 0.1836 REMARK 3 8 2.6188 - 2.5048 1.00 2702 149 0.1621 0.2072 REMARK 3 9 2.5048 - 2.4084 1.00 2695 149 0.1646 0.1823 REMARK 3 10 2.4084 - 2.3254 1.00 2668 150 0.1674 0.2106 REMARK 3 11 2.3254 - 2.2527 1.00 2674 143 0.1710 0.2072 REMARK 3 12 2.2527 - 2.1883 1.00 2699 148 0.1681 0.2241 REMARK 3 13 2.1883 - 2.1307 1.00 2659 141 0.1804 0.2022 REMARK 3 14 2.1307 - 2.0788 1.00 2702 145 0.1806 0.2231 REMARK 3 15 2.0788 - 2.0315 1.00 2641 151 0.1803 0.2078 REMARK 3 16 2.0315 - 1.9883 1.00 2665 153 0.1801 0.2414 REMARK 3 17 1.9883 - 1.9485 1.00 2684 145 0.1951 0.2148 REMARK 3 18 1.9485 - 1.9118 1.00 2674 136 0.1782 0.2243 REMARK 3 19 1.9118 - 1.8776 1.00 2663 141 0.1862 0.2231 REMARK 3 20 1.8776 - 1.8458 1.00 2695 123 0.1871 0.2485 REMARK 3 21 1.8458 - 1.8160 1.00 2650 138 0.2063 0.2551 REMARK 3 22 1.8160 - 1.7881 1.00 2656 149 0.2111 0.2386 REMARK 3 23 1.7881 - 1.7618 1.00 2644 142 0.2189 0.2383 REMARK 3 24 1.7618 - 1.7370 1.00 2703 143 0.2283 0.2769 REMARK 3 25 1.7370 - 1.7135 1.00 2616 161 0.2428 0.3003 REMARK 3 26 1.7135 - 1.6913 1.00 2651 149 0.2495 0.2804 REMARK 3 27 1.6913 - 1.6701 0.99 2673 124 0.2648 0.2679 REMARK 3 28 1.6701 - 1.6500 0.98 2633 130 0.2824 0.3276 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.83 REMARK 3 K_SOL : 0.35 REMARK 3 B_SOL : 46.81 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.420 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.340 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.42 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.66900 REMARK 3 B22 (A**2) : 6.73650 REMARK 3 B33 (A**2) : -5.06750 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.021 5573 REMARK 3 ANGLE : 1.894 7625 REMARK 3 CHIRALITY : 0.148 893 REMARK 3 PLANARITY : 0.013 995 REMARK 3 DIHEDRAL : 14.103 2077 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 36:244) REMARK 3 ORIGIN FOR THE GROUP (A): 18.5169 23.4531 5.7444 REMARK 3 T TENSOR REMARK 3 T11: 0.0971 T22: 0.0381 REMARK 3 T33: 0.1141 T12: -0.0173 REMARK 3 T13: 0.0016 T23: 0.0131 REMARK 3 L TENSOR REMARK 3 L11: 0.6764 L22: 1.6739 REMARK 3 L33: 0.8658 L12: -0.0286 REMARK 3 L13: -0.0929 L23: -0.0256 REMARK 3 S TENSOR REMARK 3 S11: -0.0014 S12: 0.0833 S13: 0.0397 REMARK 3 S21: -0.0506 S22: 0.0022 S23: 0.0298 REMARK 3 S31: 0.0142 S32: -0.0195 S33: -0.0112 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 245:276) REMARK 3 ORIGIN FOR THE GROUP (A): 4.9681 14.6970 -0.7950 REMARK 3 T TENSOR REMARK 3 T11: 0.2826 T22: 0.2792 REMARK 3 T33: 0.2734 T12: -0.0786 REMARK 3 T13: 0.0689 T23: 0.0811 REMARK 3 L TENSOR REMARK 3 L11: 2.4698 L22: 1.4583 REMARK 3 L33: 2.0657 L12: -0.3291 REMARK 3 L13: 0.1006 L23: 0.4235 REMARK 3 S TENSOR REMARK 3 S11: 0.0353 S12: -0.4547 S13: -0.5428 REMARK 3 S21: 0.5582 S22: 0.0170 S23: 0.6739 REMARK 3 S31: 0.5037 S32: -0.5859 S33: -0.0530 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 277:362) REMARK 3 ORIGIN FOR THE GROUP (A): 14.7500 14.5625 -6.4956 REMARK 3 T TENSOR REMARK 3 T11: 0.1815 T22: 0.1041 REMARK 3 T33: 0.1327 T12: 0.0144 REMARK 3 T13: -0.0056 T23: -0.0399 REMARK 3 L TENSOR REMARK 3 L11: 1.5944 L22: 1.5483 REMARK 3 L33: 1.8235 L12: 0.1437 REMARK 3 L13: -0.2364 L23: -0.3989 REMARK 3 S TENSOR REMARK 3 S11: 0.0355 S12: 0.3387 S13: -0.1253 REMARK 3 S21: -0.2243 S22: -0.0880 S23: 0.0569 REMARK 3 S31: 0.1161 S32: -0.1570 S33: 0.0263 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 36:92) REMARK 3 ORIGIN FOR THE GROUP (A): 25.1652 26.7491 38.3749 REMARK 3 T TENSOR REMARK 3 T11: 0.1091 T22: 0.4247 REMARK 3 T33: 0.1389 T12: -0.0185 REMARK 3 T13: -0.0101 T23: -0.0358 REMARK 3 L TENSOR REMARK 3 L11: 0.4676 L22: 0.1408 REMARK 3 L33: 1.4956 L12: -0.1887 REMARK 3 L13: 0.4261 L23: 0.0837 REMARK 3 S TENSOR REMARK 3 S11: -0.0208 S12: -0.5578 S13: 0.0070 REMARK 3 S21: 0.0642 S22: 0.0286 S23: -0.0841 REMARK 3 S31: -0.0786 S32: 0.1946 S33: 0.0345 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 93:219) REMARK 3 ORIGIN FOR THE GROUP (A): 12.2749 17.2666 35.3714 REMARK 3 T TENSOR REMARK 3 T11: 0.0653 T22: 0.3104 REMARK 3 T33: 0.0884 T12: 0.0065 REMARK 3 T13: 0.0275 T23: 0.0552 REMARK 3 L TENSOR REMARK 3 L11: 0.7883 L22: 0.3686 REMARK 3 L33: 0.6878 L12: 0.1644 REMARK 3 L13: 0.3439 L23: 0.0161 REMARK 3 S TENSOR REMARK 3 S11: -0.0826 S12: -0.5441 S13: -0.0548 REMARK 3 S21: 0.0501 S22: 0.0428 S23: 0.0489 REMARK 3 S31: 0.0207 S32: 0.0529 S33: 0.0124 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 220:361) REMARK 3 ORIGIN FOR THE GROUP (A): 10.0346 31.5104 47.6780 REMARK 3 T TENSOR REMARK 3 T11: 0.0168 T22: 0.6166 REMARK 3 T33: -0.0659 T12: 0.0137 REMARK 3 T13: 0.2020 T23: -0.1631 REMARK 3 L TENSOR REMARK 3 L11: 0.3920 L22: 0.0332 REMARK 3 L33: 0.6045 L12: 0.0782 REMARK 3 L13: -0.3188 L23: -0.0269 REMARK 3 S TENSOR REMARK 3 S11: 0.0599 S12: -0.6286 S13: 0.1532 REMARK 3 S21: 0.1540 S22: 0.0602 S23: 0.0407 REMARK 3 S31: -0.2082 S32: 0.0655 S33: -0.1292 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4E3T COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 15-MAR-12. REMARK 100 THE DEPOSITION ID IS D_1000071133. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-NOV-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9393 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 79417 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 2R1N REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.54 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50MM MES, 2% PEG8000, 30% MPD, PH 6.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 42.88550 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.98750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 42.88550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.98750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2850 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22540 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 33 REMARK 465 GLY A 34 REMARK 465 ASP A 35 REMARK 465 ARG A 363 REMARK 465 ALA A 364 REMARK 465 SER A 365 REMARK 465 MET B 33 REMARK 465 GLY B 34 REMARK 465 ASP B 35 REMARK 465 LEU B 362 REMARK 465 ARG B 363 REMARK 465 ALA B 364 REMARK 465 SER B 365 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 HIS A 55 N CA C O CB CG ND1 REMARK 480 HIS A 55 CD2 CE1 NE2 REMARK 480 HIS A 57 N CA C O CB CG ND1 REMARK 480 HIS A 57 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ARG B 207 O HOH B 611 2.02 REMARK 500 O HOH B 639 O HOH B 641 2.02 REMARK 500 O HOH A 640 O HOH A 723 2.04 REMARK 500 NZ LYS A 169 O HOH A 706 2.08 REMARK 500 O HOH B 639 O HOH B 717 2.10 REMARK 500 OD1 ASP B 109 O HOH B 619 2.11 REMARK 500 NH2 ARG A 41 O HOH A 642 2.12 REMARK 500 O HOH A 639 O HOH A 712 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 225 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 LEU A 249 CA - CB - CG ANGL. DEV. = -14.1 DEGREES REMARK 500 ARG B 118 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 ARG B 225 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 LEU B 249 CA - CB - CG ANGL. DEV. = -16.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 61 -157.29 -153.81 REMARK 500 SER A 75 159.61 179.04 REMARK 500 THR A 128 -168.41 -106.49 REMARK 500 TRP A 131 -154.50 -90.79 REMARK 500 GLU A 159 -131.65 52.60 REMARK 500 LEU A 262 79.14 -106.23 REMARK 500 ASN A 312 -12.86 84.82 REMARK 500 VAL A 351 -60.51 -121.57 REMARK 500 GLU B 159 -134.07 52.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 THR B 200 HIS B 201 148.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 GLY A 74 -11.83 REMARK 500 GLY B 74 -14.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 403 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 55 NE2 REMARK 620 2 HIS A 230 NE2 140.9 REMARK 620 3 ASP A 301 OD2 97.3 93.9 REMARK 620 4 HOH A 704 O 110.2 108.9 74.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 57 NE2 REMARK 620 2 ASP A 301 OD1 108.8 REMARK 620 3 HOH A 704 O 134.7 88.3 REMARK 620 4 HOH A 706 O 85.2 165.9 80.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 704 O REMARK 620 2 HOH A 728 O 60.1 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 55 NE2 REMARK 620 2 HIS B 57 NE2 116.3 REMARK 620 3 ASP B 301 OD1 93.0 85.0 REMARK 620 4 HOH B 721 O 98.0 103.6 161.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 403 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 55 NE2 REMARK 620 2 HIS B 230 NE2 103.4 REMARK 620 3 ASP B 301 OD2 115.8 96.5 REMARK 620 4 HLN B 404 OAH 127.4 106.7 102.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HLN B 404 REMARK 999 REMARK 999 SEQUENCE REMARK 999 A SEQUENCE DATABASE REFERENCE FOR THIS PROTEIN HAS BEEN DEPOSITED REMARK 999 TO GENBANK, AFL46607. DBREF 4E3T A 33 365 PDB 4E3T 4E3T 33 365 DBREF 4E3T B 33 365 PDB 4E3T 4E3T 33 365 SEQRES 1 A 333 MET GLY ASP ARG ILE ASN THR VAL ARG GLY PRO ILE THR SEQRES 2 A 333 ILE SER GLU VAL GLY PHE THR LEU THR HIS GLU HIS ILE SEQRES 3 A 333 CYS GLY SER SER ALA GLY PHE LEU ARG ALA TRP PRO GLU SEQRES 4 A 333 PHE PHE GLY SER ARG GLU ALA LEU VAL GLU LYS ALA VAL SEQRES 5 A 333 ARG GLY LEU ARG ARG ALA ARG ALA ALA GLY VAL ARG THR SEQRES 6 A 333 ILE VAL ASP VAL SER THR PHE ASP LEU GLY ARG ASP VAL SEQRES 7 A 333 ARG LEU LEU ALA GLU VAL SER ARG ALA ALA ASP VAL HIS SEQRES 8 A 333 ILE VAL ALA ALA THR GLY VAL TRP LEU ASP PRO PRO LEU SEQRES 9 A 333 SER ILE ARG MET ARG SER VAL GLU GLU LEU THR GLN PHE SEQRES 10 A 333 PHE LEU ARG GLU ILE GLN TYR GLY ILE GLU ASP THR GLY SEQRES 11 A 333 ILE ARG ALA GLY ILE ILE LYS VAL ALA ILE THR GLY LYS SEQRES 12 A 333 VAL THR PRO PHE GLN GLU LEU VAL LEU ARG ALA ALA ALA SEQRES 13 A 333 ARG ALA SER LEU ALA THR GLY VAL PRO VAL ILE THR HIS SEQRES 14 A 333 THR ALA GLY SER GLN ARG GLY GLY GLU GLN GLN ALA ALA SEQRES 15 A 333 ILE PHE GLU SER GLU GLY LEU SER PRO SER ARG VAL CYS SEQRES 16 A 333 ILE GLY HIS SER ASP GLU THR ASP ASP LEU SER TYR LEU SEQRES 17 A 333 THR ALA LEU ALA ALA ARG GLY TYR LEU ILE GLY LEU ASP SEQRES 18 A 333 ARG ILE PRO HIS SER ALA ILE GLY LEU GLU ASP ASN ALA SEQRES 19 A 333 SER ALA THR ALA PHE MET GLY SER ARG SER TRP GLN THR SEQRES 20 A 333 ARG ALA LEU LEU ILE LYS ALA LEU ILE ASP GLN GLY TYR SEQRES 21 A 333 MET LYS GLN ILE LEU VAL SER ASN ASP TRP LEU PHE GLY SEQRES 22 A 333 ILE SER SER TYR VAL THR ASN PHE MET ASP VAL MET ASP SEQRES 23 A 333 SER VAL ASN PRO ASP GLY MET ALA PHE ILE PRO LEU ARG SEQRES 24 A 333 VAL ILE PRO PHE LEU ARG GLU LYS GLY ILE PRO GLN GLU SEQRES 25 A 333 THR LEU ALA GLY ILE THR VAL THR ASN PRO ALA ARG PHE SEQRES 26 A 333 LEU SER PRO THR LEU ARG ALA SER SEQRES 1 B 333 MET GLY ASP ARG ILE ASN THR VAL ARG GLY PRO ILE THR SEQRES 2 B 333 ILE SER GLU VAL GLY PHE THR LEU THR HIS GLU HIS ILE SEQRES 3 B 333 CYS GLY SER SER ALA GLY PHE LEU ARG ALA TRP PRO GLU SEQRES 4 B 333 PHE PHE GLY SER ARG GLU ALA LEU VAL GLU LYS ALA VAL SEQRES 5 B 333 ARG GLY LEU ARG ARG ALA ARG ALA ALA GLY VAL ARG THR SEQRES 6 B 333 ILE VAL ASP VAL SER THR PHE ASP LEU GLY ARG ASP VAL SEQRES 7 B 333 ARG LEU LEU ALA GLU VAL SER ARG ALA ALA ASP VAL HIS SEQRES 8 B 333 ILE VAL ALA ALA THR GLY VAL TRP LEU ASP PRO PRO LEU SEQRES 9 B 333 SER ILE ARG MET ARG SER VAL GLU GLU LEU THR GLN PHE SEQRES 10 B 333 PHE LEU ARG GLU ILE GLN TYR GLY ILE GLU ASP THR GLY SEQRES 11 B 333 ILE ARG ALA GLY ILE ILE LYS VAL ALA ILE THR GLY LYS SEQRES 12 B 333 VAL THR PRO PHE GLN GLU LEU VAL LEU ARG ALA ALA ALA SEQRES 13 B 333 ARG ALA SER LEU ALA THR GLY VAL PRO VAL ILE THR HIS SEQRES 14 B 333 THR ALA GLY SER GLN ARG GLY GLY GLU GLN GLN ALA ALA SEQRES 15 B 333 ILE PHE GLU SER GLU GLY LEU SER PRO SER ARG VAL CYS SEQRES 16 B 333 ILE GLY HIS SER ASP GLU THR ASP ASP LEU SER TYR LEU SEQRES 17 B 333 THR ALA LEU ALA ALA ARG GLY TYR LEU ILE GLY LEU ASP SEQRES 18 B 333 ARG ILE PRO HIS SER ALA ILE GLY LEU GLU ASP ASN ALA SEQRES 19 B 333 SER ALA THR ALA PHE MET GLY SER ARG SER TRP GLN THR SEQRES 20 B 333 ARG ALA LEU LEU ILE LYS ALA LEU ILE ASP GLN GLY TYR SEQRES 21 B 333 MET LYS GLN ILE LEU VAL SER ASN ASP TRP LEU PHE GLY SEQRES 22 B 333 ILE SER SER TYR VAL THR ASN PHE MET ASP VAL MET ASP SEQRES 23 B 333 SER VAL ASN PRO ASP GLY MET ALA PHE ILE PRO LEU ARG SEQRES 24 B 333 VAL ILE PRO PHE LEU ARG GLU LYS GLY ILE PRO GLN GLU SEQRES 25 B 333 THR LEU ALA GLY ILE THR VAL THR ASN PRO ALA ARG PHE SEQRES 26 B 333 LEU SER PRO THR LEU ARG ALA SER HET ZN A 401 1 HET ZN A 402 1 HET ZN A 403 1 HET ZN B 401 1 HET ZN B 402 1 HET ZN B 403 1 HET HLN B 404 20 HETNAM ZN ZINC ION HETNAM HLN HEXYL(NAPHTHALEN-2-YLOXY)PHOSPHINIC ACID FORMUL 3 ZN 6(ZN 2+) FORMUL 9 HLN C16 H21 O3 P FORMUL 10 HOH *450(H2 O) HELIX 1 1 THR A 45 VAL A 49 5 5 HELIX 2 2 GLY A 64 TRP A 69 1 6 HELIX 3 3 PRO A 70 GLY A 74 5 5 HELIX 4 4 SER A 75 ALA A 93 1 19 HELIX 5 5 THR A 103 GLY A 107 5 5 HELIX 6 6 ASP A 109 ASP A 121 1 13 HELIX 7 7 PRO A 135 MET A 140 1 6 HELIX 8 8 SER A 142 TYR A 156 1 15 HELIX 9 9 THR A 177 GLY A 195 1 19 HELIX 10 10 GLY A 208 GLU A 219 1 12 HELIX 11 11 SER A 222 SER A 224 5 3 HELIX 12 12 HIS A 230 THR A 234 5 5 HELIX 13 13 ASP A 236 ARG A 246 1 11 HELIX 14 14 ARG A 254 ALA A 259 5 6 HELIX 15 15 ASN A 265 MET A 272 1 8 HELIX 16 16 SER A 276 GLN A 290 1 15 HELIX 17 17 TYR A 292 LYS A 294 5 3 HELIX 18 18 ASN A 312 ASN A 321 1 10 HELIX 19 19 ASP A 323 MET A 325 5 3 HELIX 20 20 ALA A 326 ARG A 331 1 6 HELIX 21 21 ARG A 331 LYS A 339 1 9 HELIX 22 22 PRO A 342 VAL A 351 1 10 HELIX 23 23 VAL A 351 SER A 359 1 9 HELIX 24 24 THR B 45 GLY B 50 1 6 HELIX 25 25 GLY B 64 TRP B 69 1 6 HELIX 26 26 PRO B 70 GLY B 74 5 5 HELIX 27 27 SER B 75 ALA B 93 1 19 HELIX 28 28 THR B 103 GLY B 107 5 5 HELIX 29 29 ASP B 109 ASP B 121 1 13 HELIX 30 30 PRO B 135 MET B 140 1 6 HELIX 31 31 SER B 142 TYR B 156 1 15 HELIX 32 32 THR B 177 GLY B 195 1 19 HELIX 33 33 GLY B 208 GLU B 219 1 12 HELIX 34 34 SER B 222 SER B 224 5 3 HELIX 35 35 HIS B 230 THR B 234 5 5 HELIX 36 36 ASP B 236 ARG B 246 1 11 HELIX 37 37 ASN B 265 GLY B 273 1 9 HELIX 38 38 SER B 276 GLN B 290 1 15 HELIX 39 39 TYR B 292 LYS B 294 5 3 HELIX 40 40 ASN B 312 ASN B 321 1 10 HELIX 41 41 ASP B 323 MET B 325 5 3 HELIX 42 42 ALA B 326 ARG B 331 1 6 HELIX 43 43 ARG B 331 LYS B 339 1 9 HELIX 44 44 PRO B 342 VAL B 351 1 10 HELIX 45 45 VAL B 351 SER B 359 1 9 SHEET 1 A 2 ILE A 37 THR A 39 0 SHEET 2 A 2 GLY A 42 ILE A 44 -1 O ILE A 44 N ILE A 37 SHEET 1 B 3 THR A 52 GLU A 56 0 SHEET 2 B 3 THR A 97 ASP A 100 1 O VAL A 99 N LEU A 53 SHEET 3 B 3 HIS A 123 VAL A 125 1 O HIS A 123 N ILE A 98 SHEET 1 C 2 CYS A 59 GLY A 60 0 SHEET 2 C 2 GLY A 305 ILE A 306 1 O GLY A 305 N GLY A 60 SHEET 1 D 6 ALA A 127 VAL A 130 0 SHEET 2 D 6 ILE A 167 THR A 173 1 O LYS A 169 N THR A 128 SHEET 3 D 6 VAL A 198 ALA A 203 1 O ILE A 199 N ILE A 168 SHEET 4 D 6 VAL A 226 GLY A 229 1 O GLY A 229 N THR A 200 SHEET 5 D 6 LEU A 249 LEU A 252 1 O LEU A 249 N ILE A 228 SHEET 6 D 6 ILE A 296 VAL A 298 1 O LEU A 297 N LEU A 252 SHEET 1 E 2 ILE B 37 THR B 39 0 SHEET 2 E 2 GLY B 42 ILE B 44 -1 O ILE B 44 N ILE B 37 SHEET 1 F 3 THR B 52 GLU B 56 0 SHEET 2 F 3 THR B 97 ASP B 100 1 O THR B 97 N LEU B 53 SHEET 3 F 3 HIS B 123 VAL B 125 1 O VAL B 125 N ASP B 100 SHEET 1 G 2 CYS B 59 GLY B 60 0 SHEET 2 G 2 GLY B 305 ILE B 306 1 O GLY B 305 N GLY B 60 SHEET 1 H 6 ALA B 127 VAL B 130 0 SHEET 2 H 6 ILE B 167 VAL B 170 1 O LYS B 169 N THR B 128 SHEET 3 H 6 VAL B 198 THR B 200 1 O ILE B 199 N ILE B 168 SHEET 4 H 6 VAL B 226 ILE B 228 1 O CYS B 227 N VAL B 198 SHEET 5 H 6 LEU B 249 LEU B 252 1 O LEU B 249 N ILE B 228 SHEET 6 H 6 ILE B 296 VAL B 298 1 O LEU B 297 N LEU B 252 LINK NE2BHIS A 55 ZN B ZN A 403 1555 1555 1.93 LINK NE2AHIS A 57 ZN A ZN A 401 1555 1555 2.45 LINK NE2 HIS A 230 ZN B ZN A 403 1555 1555 1.85 LINK OD1AASP A 301 ZN A ZN A 401 1555 1555 2.31 LINK OD2BASP A 301 ZN B ZN A 403 1555 1555 1.92 LINK ZN A ZN A 401 O HOH A 704 1555 1555 2.09 LINK ZN A ZN A 401 O HOH A 706 1555 1555 2.05 LINK ZN A ZN A 402 O HOH A 704 1555 1555 2.63 LINK ZN A ZN A 402 O HOH A 728 1555 1555 2.22 LINK ZN B ZN A 403 O HOH A 704 1555 1555 2.51 LINK NE2AHIS B 55 ZN A ZN B 401 1555 1555 2.10 LINK NE2BHIS B 55 ZN B ZN B 403 1555 1555 2.09 LINK NE2 HIS B 57 ZN A ZN B 401 1555 1555 2.11 LINK NE2AHIS B 230 ZN A ZN B 402 1555 1555 2.08 LINK NE2BHIS B 230 ZN B ZN B 403 1555 1555 2.06 LINK OD1AASP B 301 ZN A ZN B 401 1555 1555 2.52 LINK OD2BASP B 301 ZN B ZN B 403 1555 1555 2.06 LINK ZN A ZN B 401 O AHOH B 721 1555 1555 1.92 LINK ZN B ZN B 403 OAHBHLN B 404 1555 1555 2.15 SITE 1 AC1 6 HIS A 55 HIS A 57 ASP A 301 ZN A 403 SITE 2 AC1 6 HOH A 704 HOH A 706 SITE 1 AC2 6 HIS A 201 HIS A 230 ZN A 403 HOH A 704 SITE 2 AC2 6 HOH A 706 HOH A 728 SITE 1 AC3 7 HIS A 55 HIS A 230 ASP A 301 ZN A 401 SITE 2 AC3 7 ZN A 402 HOH A 704 HOH A 706 SITE 1 AC4 6 HIS B 55 HIS B 57 LYS B 169 ASP B 301 SITE 2 AC4 6 ZN B 403 HOH B 721 SITE 1 AC5 5 HIS B 201 HIS B 230 ZN B 403 HLN B 404 SITE 2 AC5 5 HOH B 721 SITE 1 AC6 7 HIS B 55 HIS B 230 ASP B 301 ZN B 401 SITE 2 AC6 7 ZN B 402 HLN B 404 HOH B 721 SITE 1 AC7 15 HIS B 55 HIS B 57 TRP B 131 LYS B 169 SITE 2 AC7 15 HIS B 201 GLY B 204 HIS B 230 ARG B 254 SITE 3 AC7 15 PHE B 271 ASP B 301 ILE B 306 SER B 308 SITE 4 AC7 15 ZN B 402 ZN B 403 HOH B 721 CRYST1 85.771 85.975 88.727 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011659 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011631 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011271 0.00000