HEADER ISOMERASE 10-MAR-12 4E3V TITLE CRYSTAL STRUCTURE OF XYLOSE ISOMERASE FROM STREPTOMYCES RUBIGINOSUS TITLE 2 CRYOPROTECTED IN PROLINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: XYLOSE ISOMERASE; COMPND 3 CHAIN: A; COMPND 4 EC: 5.3.1.5 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES RUBIGINOSUS; SOURCE 3 ORGANISM_TAXID: 1929 KEYWDS ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.J.TANNER,T.A.PEMBERTON REVDAT 3 13-SEP-23 4E3V 1 REMARK LINK REVDAT 2 29-AUG-12 4E3V 1 JRNL REVDAT 1 25-JUL-12 4E3V 0 JRNL AUTH T.A.PEMBERTON,B.R.STILL,E.M.CHRISTENSEN,H.SINGH, JRNL AUTH 2 D.SRIVASTAVA,J.J.TANNER JRNL TITL PROLINE: MOTHER NATURE'S CRYOPROTECTANT APPLIED TO PROTEIN JRNL TITL 2 CRYSTALLOGRAPHY. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 68 1010 2012 JRNL REFN ISSN 0907-4449 JRNL PMID 22868767 JRNL DOI 10.1107/S0907444912019580 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.7.3_928 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.46 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 3 NUMBER OF REFLECTIONS : 72403 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.165 REMARK 3 R VALUE (WORKING SET) : 0.164 REMARK 3 FREE R VALUE : 0.179 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 3657 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 19.4600 - 4.4354 1.00 2881 137 0.1693 0.1665 REMARK 3 2 4.4354 - 3.5273 1.00 2763 154 0.1406 0.1387 REMARK 3 3 3.5273 - 3.0835 1.00 2765 149 0.1683 0.1800 REMARK 3 4 3.0835 - 2.8024 1.00 2716 155 0.1795 0.1920 REMARK 3 5 2.8024 - 2.6021 1.00 2750 127 0.1783 0.1989 REMARK 3 6 2.6021 - 2.4490 1.00 2701 147 0.1699 0.2042 REMARK 3 7 2.4490 - 2.3265 1.00 2692 152 0.1586 0.1752 REMARK 3 8 2.3265 - 2.2254 1.00 2662 166 0.1551 0.1753 REMARK 3 9 2.2254 - 2.1398 1.00 2712 149 0.1588 0.1736 REMARK 3 10 2.1398 - 2.0661 1.00 2662 160 0.1692 0.1736 REMARK 3 11 2.0661 - 2.0016 0.99 2662 160 0.1561 0.1647 REMARK 3 12 2.0016 - 1.9444 0.99 2693 143 0.1628 0.1876 REMARK 3 13 1.9444 - 1.8932 0.99 2663 128 0.1507 0.1797 REMARK 3 14 1.8932 - 1.8471 0.99 2666 124 0.1533 0.1641 REMARK 3 15 1.8471 - 1.8051 0.99 2667 133 0.1473 0.1572 REMARK 3 16 1.8051 - 1.7667 0.99 2659 139 0.1443 0.1458 REMARK 3 17 1.7667 - 1.7314 0.99 2643 144 0.1392 0.1774 REMARK 3 18 1.7314 - 1.6988 0.99 2667 135 0.1430 0.1717 REMARK 3 19 1.6988 - 1.6685 0.98 2650 139 0.1405 0.1596 REMARK 3 20 1.6685 - 1.6402 0.98 2629 138 0.1445 0.1810 REMARK 3 21 1.6402 - 1.6137 0.98 2622 147 0.1402 0.1651 REMARK 3 22 1.6137 - 1.5889 0.98 2610 134 0.1597 0.1769 REMARK 3 23 1.5889 - 1.5656 0.97 2585 140 0.1902 0.2266 REMARK 3 24 1.5656 - 1.5435 0.97 2625 132 0.2399 0.2408 REMARK 3 25 1.5435 - 1.5227 0.95 2567 127 0.2787 0.3622 REMARK 3 26 1.5227 - 1.5030 0.68 1834 98 0.3387 0.4327 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.00 REMARK 3 SHRINKAGE RADIUS : 0.73 REMARK 3 K_SOL : 0.40 REMARK 3 B_SOL : 33.61 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 16.350 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.29730 REMARK 3 B22 (A**2) : 1.77630 REMARK 3 B33 (A**2) : -1.47900 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 3147 REMARK 3 ANGLE : 1.107 4271 REMARK 3 CHIRALITY : 0.070 442 REMARK 3 PLANARITY : 0.006 578 REMARK 3 DIHEDRAL : 12.376 1166 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND RESSEQ 3:387 REMARK 3 ORIGIN FOR THE GROUP (A): 30.7345 38.8119 61.7230 REMARK 3 T TENSOR REMARK 3 T11: 0.0437 T22: 0.0601 REMARK 3 T33: 0.0536 T12: -0.0080 REMARK 3 T13: 0.0116 T23: -0.0022 REMARK 3 L TENSOR REMARK 3 L11: 0.1713 L22: 0.1940 REMARK 3 L33: 0.2736 L12: 0.0342 REMARK 3 L13: 0.0254 L23: -0.0032 REMARK 3 S TENSOR REMARK 3 S11: -0.0053 S12: -0.0253 S13: -0.0206 REMARK 3 S21: 0.0219 S22: -0.0095 S23: 0.0280 REMARK 3 S31: 0.0342 S32: -0.0500 S33: 0.0144 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4E3V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-MAR-12. REMARK 100 THE DEPOSITION ID IS D_1000071135. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-JAN-12 REMARK 200 TEMPERATURE (KELVIN) : 123 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RUH3R REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 72416 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 19.460 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 1XIF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.17 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.68 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.0M AMMONIUM SULFATE, 0.1M TRIS-HCL, REMARK 280 PH 8.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 46.24650 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 49.01100 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 51.21250 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 46.24650 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 49.01100 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 51.21250 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 46.24650 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 49.01100 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 51.21250 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 46.24650 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 49.01100 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 51.21250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 32220 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 46010 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -279.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 92.49300 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 98.02200 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 92.49300 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 102.42500 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 98.02200 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 102.42500 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 751 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 815 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASN A 2 REMARK 465 GLY A 388 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 8 CG CD OE1 OE2 REMARK 470 ARG A 10 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 32 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 45 CG CD OE1 OE2 REMARK 470 GLU A 69 CG CD OE1 OE2 REMARK 470 GLU A 128 CG CD OE1 OE2 REMARK 470 GLU A 207 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 17 -76.74 -83.79 REMARK 500 GLU A 186 107.49 75.49 REMARK 500 GLU A 186 107.80 75.26 REMARK 500 ASN A 247 -167.03 -168.61 REMARK 500 LYS A 253 -174.08 -170.63 REMARK 500 ALA A 343 59.91 -151.93 REMARK 500 PHE A 357 -72.11 -157.16 REMARK 500 ALA A 386 50.53 -119.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 404 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 181 OE2 REMARK 620 2 GLU A 217 OE1 98.5 REMARK 620 3 ASP A 245 OD2 103.3 111.3 REMARK 620 4 ASP A 287 OD2 147.0 94.2 100.3 REMARK 620 5 HOH A 808 O 65.8 91.3 156.6 83.6 REMARK 620 6 HOH A 810 O 80.6 156.7 91.5 76.0 66.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 405 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 217 OE2 REMARK 620 2 HIS A 220 NE2 77.8 REMARK 620 3 ASP A 255 OD2 142.9 87.6 REMARK 620 4 ASP A 255 OD1 93.9 95.7 53.5 REMARK 620 5 ASP A 257 OD1 92.9 170.7 100.2 85.1 REMARK 620 6 HOH A 806 O 120.5 99.2 95.3 144.7 85.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PRO A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 405 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4E3U RELATED DB: PDB REMARK 900 RELATED ID: 4E3W RELATED DB: PDB REMARK 900 RELATED ID: 4E3X RELATED DB: PDB DBREF 4E3V A 1 388 UNP P24300 XYLA_STRRU 1 388 SEQRES 1 A 388 MET ASN TYR GLN PRO THR PRO GLU ASP ARG PHE THR PHE SEQRES 2 A 388 GLY LEU TRP THR VAL GLY TRP GLN GLY ARG ASP PRO PHE SEQRES 3 A 388 GLY ASP ALA THR ARG ARG ALA LEU ASP PRO VAL GLU SER SEQRES 4 A 388 VAL ARG ARG LEU ALA GLU LEU GLY ALA HIS GLY VAL THR SEQRES 5 A 388 PHE HIS ASP ASP ASP LEU ILE PRO PHE GLY SER SER ASP SEQRES 6 A 388 SER GLU ARG GLU GLU HIS VAL LYS ARG PHE ARG GLN ALA SEQRES 7 A 388 LEU ASP ASP THR GLY MET LYS VAL PRO MET ALA THR THR SEQRES 8 A 388 ASN LEU PHE THR HIS PRO VAL PHE LYS ASP GLY GLY PHE SEQRES 9 A 388 THR ALA ASN ASP ARG ASP VAL ARG ARG TYR ALA LEU ARG SEQRES 10 A 388 LYS THR ILE ARG ASN ILE ASP LEU ALA VAL GLU LEU GLY SEQRES 11 A 388 ALA GLU THR TYR VAL ALA TRP GLY GLY ARG GLU GLY ALA SEQRES 12 A 388 GLU SER GLY GLY ALA LYS ASP VAL ARG ASP ALA LEU ASP SEQRES 13 A 388 ARG MET LYS GLU ALA PHE ASP LEU LEU GLY GLU TYR VAL SEQRES 14 A 388 THR SER GLN GLY TYR ASP ILE ARG PHE ALA ILE GLU PRO SEQRES 15 A 388 LYS PRO ASN GLU PRO ARG GLY ASP ILE LEU LEU PRO THR SEQRES 16 A 388 VAL GLY HIS ALA LEU ALA PHE ILE GLU ARG LEU GLU ARG SEQRES 17 A 388 PRO GLU LEU TYR GLY VAL ASN PRO GLU VAL GLY HIS GLU SEQRES 18 A 388 GLN MET ALA GLY LEU ASN PHE PRO HIS GLY ILE ALA GLN SEQRES 19 A 388 ALA LEU TRP ALA GLY LYS LEU PHE HIS ILE ASP LEU ASN SEQRES 20 A 388 GLY GLN ASN GLY ILE LYS TYR ASP GLN ASP LEU ARG PHE SEQRES 21 A 388 GLY ALA GLY ASP LEU ARG ALA ALA PHE TRP LEU VAL ASP SEQRES 22 A 388 LEU LEU GLU SER ALA GLY TYR SER GLY PRO ARG HIS PHE SEQRES 23 A 388 ASP PHE LYS PRO PRO ARG THR GLU ASP PHE ASP GLY VAL SEQRES 24 A 388 TRP ALA SER ALA ALA GLY CYS MET ARG ASN TYR LEU ILE SEQRES 25 A 388 LEU LYS GLU ARG ALA ALA ALA PHE ARG ALA ASP PRO GLU SEQRES 26 A 388 VAL GLN GLU ALA LEU ARG ALA SER ARG LEU ASP GLU LEU SEQRES 27 A 388 ALA ARG PRO THR ALA ALA ASP GLY LEU GLN ALA LEU LEU SEQRES 28 A 388 ASP ASP ARG SER ALA PHE GLU GLU PHE ASP VAL ASP ALA SEQRES 29 A 388 ALA ALA ALA ARG GLY MET ALA PHE GLU ARG LEU ASP GLN SEQRES 30 A 388 LEU ALA MET ASP HIS LEU LEU GLY ALA ARG GLY HET PRO A 401 8 HET SO4 A 402 5 HET SO4 A 403 5 HET MG A 404 1 HET MN A 405 1 HETNAM PRO PROLINE HETNAM SO4 SULFATE ION HETNAM MG MAGNESIUM ION HETNAM MN MANGANESE (II) ION FORMUL 2 PRO C5 H9 N O2 FORMUL 3 SO4 2(O4 S 2-) FORMUL 5 MG MG 2+ FORMUL 6 MN MN 2+ FORMUL 7 HOH *324(H2 O) HELIX 1 1 THR A 6 ASP A 9 5 4 HELIX 2 2 LEU A 15 GLY A 19 1 5 HELIX 3 3 ASP A 35 LEU A 46 1 12 HELIX 4 4 ASP A 55 ILE A 59 1 5 HELIX 5 5 SER A 64 GLY A 83 1 20 HELIX 6 6 HIS A 96 LYS A 100 5 5 HELIX 7 7 ASP A 108 LEU A 129 1 22 HELIX 8 8 SER A 145 LYS A 149 5 5 HELIX 9 9 ASP A 150 GLY A 173 1 24 HELIX 10 10 THR A 195 GLU A 204 1 10 HELIX 11 11 ARG A 208 GLU A 210 5 3 HELIX 12 12 GLU A 217 MET A 223 1 7 HELIX 13 13 ASN A 227 ALA A 238 1 12 HELIX 14 14 ASP A 264 GLY A 279 1 16 HELIX 15 15 ASP A 295 ASP A 323 1 29 HELIX 16 16 ASP A 323 SER A 333 1 11 HELIX 17 17 ARG A 334 ALA A 339 1 6 HELIX 18 18 GLY A 346 ASP A 353 1 8 HELIX 19 19 ARG A 354 PHE A 357 5 4 HELIX 20 20 ASP A 361 ARG A 368 1 8 HELIX 21 21 ALA A 371 GLY A 385 1 15 SHEET 1 A 8 TYR A 212 VAL A 214 0 SHEET 2 A 8 ARG A 177 ILE A 180 1 N ILE A 180 O GLY A 213 SHEET 3 A 8 THR A 133 ALA A 136 1 N TYR A 134 O ARG A 177 SHEET 4 A 8 MET A 88 THR A 90 1 N ALA A 89 O VAL A 135 SHEET 5 A 8 GLY A 50 HIS A 54 1 N PHE A 53 O THR A 90 SHEET 6 A 8 PHE A 11 GLY A 14 1 N PHE A 13 O THR A 52 SHEET 7 A 8 ARG A 284 PHE A 286 1 O PHE A 286 N THR A 12 SHEET 8 A 8 ASP A 245 LEU A 246 1 N LEU A 246 O HIS A 285 SHEET 1 B 2 GLY A 142 ALA A 143 0 SHEET 2 B 2 ASP A 190 ILE A 191 -1 O ASP A 190 N ALA A 143 LINK OE2 GLU A 181 MG MG A 404 1555 1555 2.55 LINK OE1 GLU A 217 MG MG A 404 1555 1555 2.59 LINK OE2 GLU A 217 MN MN A 405 1555 1555 2.30 LINK NE2 HIS A 220 MN MN A 405 1555 1555 2.80 LINK OD2 ASP A 245 MG MG A 404 1555 1555 2.52 LINK OD2 ASP A 255 MN MN A 405 1555 1555 2.34 LINK OD1 ASP A 255 MN MN A 405 1555 1555 2.54 LINK OD1 ASP A 257 MN MN A 405 1555 1555 2.40 LINK OD2 ASP A 287 MG MG A 404 1555 1555 2.47 LINK MG MG A 404 O HOH A 808 1555 1555 2.82 LINK MG MG A 404 O HOH A 810 1555 1555 2.94 LINK MN MN A 405 O HOH A 806 1555 1555 2.38 CISPEP 1 GLU A 186 PRO A 187 0 13.93 CISPEP 2 GLU A 186 PRO A 187 0 13.73 SITE 1 AC1 5 ALA A 278 GLY A 279 TYR A 280 SER A 281 SITE 2 AC1 5 HOH A 519 SITE 1 AC2 6 TRP A 20 GLN A 21 GLY A 22 ARG A 23 SITE 2 AC2 6 HOH A 742 HOH A 745 SITE 1 AC3 4 ARG A 23 ASP A 28 ALA A 29 HOH A 578 SITE 1 AC4 6 GLU A 181 GLU A 217 ASP A 245 ASP A 287 SITE 2 AC4 6 HOH A 808 HOH A 810 SITE 1 AC5 5 GLU A 217 HIS A 220 ASP A 255 ASP A 257 SITE 2 AC5 5 HOH A 806 CRYST1 92.493 98.022 102.425 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010812 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010202 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009763 0.00000