HEADER HYDROLASE 11-MAR-12 4E3Y TITLE X-RAY STRUCTURE OF THE SERRATIA MARCESCENS ENDONUCLEASE AT 0.95 A TITLE 2 RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: NUCLEASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 22-266; COMPND 5 SYNONYM: ENDONUCLEASE, NUCLEASE ISOFORM SM2, NUCLEASE ISOFORM SM3, COMPND 6 NUCLEASE ISOFORM SM1; COMPND 7 EC: 3.1.30.2 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SERRATIA MARCESCENS; SOURCE 3 ORGANISM_TAXID: 615; SOURCE 4 STRAIN: SM6 KEYWDS ROSSMANN FOLD, HYDROLASE, NUCLEIC ACID, EXTRACELLULAR EXPDTA X-RAY DIFFRACTION AUTHOR A.A.LASHKOV,V.V.BALAEV,A.G.GABDOULKHAKOV,C.BETZEL,A.M.MIKHAILOV REVDAT 2 13-SEP-23 4E3Y 1 REMARK LINK REVDAT 1 08-MAY-13 4E3Y 0 JRNL AUTH A.A.LASHKOV,V.V.BALAEV,A.G.GABDOULKHAKOV,C.BETZEL, JRNL AUTH 2 A.M.MIKHAILOV JRNL TITL X-RAY STRUCTURE OF THE SERRATIA MARCESCENS ENDONUCLEASE AT JRNL TITL 2 0.95 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 0.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.7.3_928 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 0.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 8.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.3 REMARK 3 NUMBER OF REFLECTIONS : 309541 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.131 REMARK 3 R VALUE (WORKING SET) : 0.130 REMARK 3 FREE R VALUE : 0.145 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 15589 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 8.0002 - 2.9049 0.91 10061 510 0.1563 0.1696 REMARK 3 2 2.9049 - 2.3243 0.94 10065 524 0.1331 0.1484 REMARK 3 3 2.3243 - 2.0361 0.95 10098 538 0.1222 0.1322 REMARK 3 4 2.0361 - 1.8524 0.95 10092 563 0.1232 0.1416 REMARK 3 5 1.8524 - 1.7211 0.93 9846 531 0.1144 0.1305 REMARK 3 6 1.7211 - 1.6205 0.93 9810 541 0.0952 0.1127 REMARK 3 7 1.6205 - 1.5399 0.94 9867 533 0.0893 0.1068 REMARK 3 8 1.5399 - 1.4733 0.94 9920 533 0.0899 0.1141 REMARK 3 9 1.4733 - 1.4169 0.95 10002 518 0.0896 0.1108 REMARK 3 10 1.4169 - 1.3683 0.95 10010 525 0.0935 0.1160 REMARK 3 11 1.3683 - 1.3257 0.95 10002 538 0.0907 0.1137 REMARK 3 12 1.3257 - 1.2880 0.96 10013 552 0.0986 0.1089 REMARK 3 13 1.2880 - 1.2542 0.96 10010 561 0.0995 0.1177 REMARK 3 14 1.2542 - 1.2237 0.96 9979 545 0.1037 0.1313 REMARK 3 15 1.2237 - 1.1960 0.96 10027 524 0.1081 0.1203 REMARK 3 16 1.1960 - 1.1706 0.95 9964 533 0.1041 0.1177 REMARK 3 17 1.1706 - 1.1473 0.95 9964 499 0.1100 0.1286 REMARK 3 18 1.1473 - 1.1257 0.94 9861 558 0.1158 0.1343 REMARK 3 19 1.1257 - 1.1056 0.94 9867 478 0.1222 0.1297 REMARK 3 20 1.1056 - 1.0869 0.93 9692 530 0.1331 0.1429 REMARK 3 21 1.0869 - 1.0694 0.93 9773 511 0.1442 0.1604 REMARK 3 22 1.0694 - 1.0530 0.93 9675 490 0.1579 0.1687 REMARK 3 23 1.0530 - 1.0376 0.92 9672 504 0.1719 0.1927 REMARK 3 24 1.0376 - 1.0230 0.92 9536 541 0.1863 0.1961 REMARK 3 25 1.0230 - 1.0092 0.92 9535 511 0.1963 0.2134 REMARK 3 26 1.0092 - 0.9961 0.91 9489 498 0.2165 0.2264 REMARK 3 27 0.9961 - 0.9837 0.91 9492 494 0.2333 0.2398 REMARK 3 28 0.9837 - 0.9718 0.91 9496 461 0.2465 0.2774 REMARK 3 29 0.9718 - 0.9605 0.90 9439 470 0.2642 0.2845 REMARK 3 30 0.9605 - 0.9498 0.84 8695 475 0.2713 0.2766 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 0.90 REMARK 3 SHRINKAGE RADIUS : 0.60 REMARK 3 K_SOL : 0.49 REMARK 3 B_SOL : 71.60 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.060 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 13.290 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 12.18 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.83430 REMARK 3 B22 (A**2) : 2.27910 REMARK 3 B33 (A**2) : -1.44480 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.017 4010 REMARK 3 ANGLE : 1.820 5487 REMARK 3 CHIRALITY : 0.117 605 REMARK 3 PLANARITY : 0.012 719 REMARK 3 DIHEDRAL : 11.226 1512 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4E3Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-MAR-12. REMARK 100 THE DEPOSITION ID IS D_1000071138. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-OCT-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : BW7B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.847 REMARK 200 MONOCHROMATOR : SI (111), HORIZONTALLY FOCUSSING REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 313007 REMARK 200 RESOLUTION RANGE HIGH (A) : 0.950 REMARK 200 RESOLUTION RANGE LOW (A) : 27.597 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.1 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1G8T REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.54 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10 MM TRIS-HCL, 1 MM MG(2+), PEG4000, REMARK 280 PH 8.3, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 53.13250 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.70900 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 53.13250 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 36.70900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 1001 REMARK 465 THR A 1002 REMARK 465 LEU A 1003 REMARK 465 GLU A 1004 REMARK 465 ASN A 1245 REMARK 465 ASP B 2001 REMARK 465 THR B 2002 REMARK 465 LEU B 2003 REMARK 465 GLU B 2004 REMARK 465 ASN B 2245 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H LEU A 1157 HE2 HIS A 1164 1.29 REMARK 500 H LEU B 2157 HE2 HIS B 2164 1.33 REMARK 500 HE2 LYS B 2048 O HOH B 2760 1.56 REMARK 500 OD2 ASP A 1225 O HOH A 2980 1.99 REMARK 500 O1 SO4 B 2303 O HOH B 2735 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B2057 CD - NE - CZ ANGL. DEV. = 8.6 DEGREES REMARK 500 ARG B2057 NE - CZ - NH1 ANGL. DEV. = -10.2 DEGREES REMARK 500 ARG B2057 NE - CZ - NH2 ANGL. DEV. = 8.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A1010 -45.05 71.78 REMARK 500 GLU A1151 -96.41 -105.46 REMARK 500 ASN A1177 -94.72 66.98 REMARK 500 ALA B2010 -44.25 69.59 REMARK 500 ASN B2177 -99.55 65.78 REMARK 500 SER B2179 142.33 -170.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A2601 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A1119 OD1 REMARK 620 2 HOH A2701 O 86.2 REMARK 620 3 HOH A2702 O 83.1 94.9 REMARK 620 4 HOH A2703 O 96.7 86.9 178.2 REMARK 620 5 HOH A2704 O 169.1 90.2 87.0 93.3 REMARK 620 6 HOH A2705 O 94.8 171.1 94.0 84.2 90.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B2301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN B2119 OD1 REMARK 620 2 HOH B2401 O 95.3 REMARK 620 3 HOH B2402 O 96.7 83.0 REMARK 620 4 HOH B2403 O 85.6 170.1 87.1 REMARK 620 5 HOH B2404 O 84.5 94.8 177.6 95.1 REMARK 620 6 HOH B2405 O 169.9 89.6 92.6 91.1 86.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 2601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 2602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 2603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 2301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 2302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 2303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 2304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 2305 DBREF 4E3Y A 1001 1245 UNP P13717 NUCA_SERMA 22 266 DBREF 4E3Y B 2001 2245 UNP P13717 NUCA_SERMA 22 266 SEQRES 1 A 245 ASP THR LEU GLU SER ILE ASP ASN CYS ALA VAL GLY CYS SEQRES 2 A 245 PRO THR GLY GLY SER SER ASN VAL SER ILE VAL ARG HIS SEQRES 3 A 245 ALA TYR THR LEU ASN ASN ASN SER THR THR LYS PHE ALA SEQRES 4 A 245 ASN TRP VAL ALA TYR HIS ILE THR LYS ASP THR PRO ALA SEQRES 5 A 245 SER GLY LYS THR ARG ASN TRP LYS THR ASP PRO ALA LEU SEQRES 6 A 245 ASN PRO ALA ASP THR LEU ALA PRO ALA ASP TYR THR GLY SEQRES 7 A 245 ALA ASN ALA ALA LEU LYS VAL ASP ARG GLY HIS GLN ALA SEQRES 8 A 245 PRO LEU ALA SER LEU ALA GLY VAL SER ASP TRP GLU SER SEQRES 9 A 245 LEU ASN TYR LEU SER ASN ILE THR PRO GLN LYS SER ASP SEQRES 10 A 245 LEU ASN GLN GLY ALA TRP ALA ARG LEU GLU ASP GLN GLU SEQRES 11 A 245 ARG LYS LEU ILE ASP ARG ALA ASP ILE SER SER VAL TYR SEQRES 12 A 245 THR VAL THR GLY PRO LEU TYR GLU ARG ASP MET GLY LYS SEQRES 13 A 245 LEU PRO GLY THR GLN LYS ALA HIS THR ILE PRO SER ALA SEQRES 14 A 245 TYR TRP LYS VAL ILE PHE ILE ASN ASN SER PRO ALA VAL SEQRES 15 A 245 ASN HIS TYR ALA ALA PHE LEU PHE ASP GLN ASN THR PRO SEQRES 16 A 245 LYS GLY ALA ASP PHE CYS GLN PHE ARG VAL THR VAL ASP SEQRES 17 A 245 GLU ILE GLU LYS ARG THR GLY LEU ILE ILE TRP ALA GLY SEQRES 18 A 245 LEU PRO ASP ASP VAL GLN ALA SER LEU LYS SER LYS PRO SEQRES 19 A 245 GLY VAL LEU PRO GLU LEU MET GLY CYS LYS ASN SEQRES 1 B 245 ASP THR LEU GLU SER ILE ASP ASN CYS ALA VAL GLY CYS SEQRES 2 B 245 PRO THR GLY GLY SER SER ASN VAL SER ILE VAL ARG HIS SEQRES 3 B 245 ALA TYR THR LEU ASN ASN ASN SER THR THR LYS PHE ALA SEQRES 4 B 245 ASN TRP VAL ALA TYR HIS ILE THR LYS ASP THR PRO ALA SEQRES 5 B 245 SER GLY LYS THR ARG ASN TRP LYS THR ASP PRO ALA LEU SEQRES 6 B 245 ASN PRO ALA ASP THR LEU ALA PRO ALA ASP TYR THR GLY SEQRES 7 B 245 ALA ASN ALA ALA LEU LYS VAL ASP ARG GLY HIS GLN ALA SEQRES 8 B 245 PRO LEU ALA SER LEU ALA GLY VAL SER ASP TRP GLU SER SEQRES 9 B 245 LEU ASN TYR LEU SER ASN ILE THR PRO GLN LYS SER ASP SEQRES 10 B 245 LEU ASN GLN GLY ALA TRP ALA ARG LEU GLU ASP GLN GLU SEQRES 11 B 245 ARG LYS LEU ILE ASP ARG ALA ASP ILE SER SER VAL TYR SEQRES 12 B 245 THR VAL THR GLY PRO LEU TYR GLU ARG ASP MET GLY LYS SEQRES 13 B 245 LEU PRO GLY THR GLN LYS ALA HIS THR ILE PRO SER ALA SEQRES 14 B 245 TYR TRP LYS VAL ILE PHE ILE ASN ASN SER PRO ALA VAL SEQRES 15 B 245 ASN HIS TYR ALA ALA PHE LEU PHE ASP GLN ASN THR PRO SEQRES 16 B 245 LYS GLY ALA ASP PHE CYS GLN PHE ARG VAL THR VAL ASP SEQRES 17 B 245 GLU ILE GLU LYS ARG THR GLY LEU ILE ILE TRP ALA GLY SEQRES 18 B 245 LEU PRO ASP ASP VAL GLN ALA SER LEU LYS SER LYS PRO SEQRES 19 B 245 GLY VAL LEU PRO GLU LEU MET GLY CYS LYS ASN HET MG A2601 1 HET EDO A2602 4 HET PEG A2603 7 HET MG B2301 1 HET SO4 B2302 5 HET SO4 B2303 5 HET GOL B2304 6 HET EDO B2305 4 HETNAM MG MAGNESIUM ION HETNAM EDO 1,2-ETHANEDIOL HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN EDO ETHYLENE GLYCOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 MG 2(MG 2+) FORMUL 4 EDO 2(C2 H6 O2) FORMUL 5 PEG C4 H10 O3 FORMUL 7 SO4 2(O4 S 2-) FORMUL 9 GOL C3 H8 O3 FORMUL 11 HOH *685(H2 O) HELIX 1 1 ASN A 1066 THR A 1070 5 5 HELIX 2 2 ALA A 1072 THR A 1077 5 6 HELIX 3 3 GLY A 1078 LYS A 1084 1 7 HELIX 4 4 PRO A 1092 ALA A 1097 1 6 HELIX 5 5 ASP A 1101 SER A 1109 5 9 HELIX 6 6 SER A 1116 GLN A 1120 1 5 HELIX 7 7 GLY A 1121 LEU A 1133 1 13 HELIX 8 8 ILE A 1134 ARG A 1136 5 3 HELIX 9 9 ASP A 1199 ARG A 1204 5 6 HELIX 10 10 THR A 1206 GLY A 1215 1 10 HELIX 11 11 PRO A 1223 LYS A 1231 1 9 HELIX 12 12 VAL A 1236 MET A 1241 1 6 HELIX 13 13 ASN B 2066 THR B 2070 5 5 HELIX 14 14 ALA B 2072 THR B 2077 5 6 HELIX 15 15 GLY B 2078 LYS B 2084 1 7 HELIX 16 16 PRO B 2092 ALA B 2097 1 6 HELIX 17 17 ASP B 2101 SER B 2109 5 9 HELIX 18 18 SER B 2116 GLN B 2120 1 5 HELIX 19 19 GLY B 2121 LEU B 2133 1 13 HELIX 20 20 ILE B 2134 ARG B 2136 5 3 HELIX 21 21 ASP B 2199 ARG B 2204 5 6 HELIX 22 22 THR B 2206 GLY B 2215 1 10 HELIX 23 23 PRO B 2223 LYS B 2231 1 9 HELIX 24 24 VAL B 2236 GLY B 2242 5 7 SHEET 1 A 6 ILE A1023 VAL A1024 0 SHEET 2 A 6 THR A1029 ASN A1032 -1 O LEU A1030 N ILE A1023 SHEET 3 A 6 ALA A1039 ILE A1046 -1 O ALA A1043 N THR A1029 SHEET 4 A 6 VAL A1142 LEU A1149 -1 O VAL A1142 N ILE A1046 SHEET 5 A 6 ALA A1169 ILE A1176 -1 O VAL A1173 N VAL A1145 SHEET 6 A 6 TYR A1185 ASP A1191 -1 O PHE A1190 N TYR A1170 SHEET 1 B 2 VAL A1085 HIS A1089 0 SHEET 2 B 2 ILE A1111 LYS A1115 -1 O GLN A1114 N ASP A1086 SHEET 1 C 6 ILE B2023 VAL B2024 0 SHEET 2 C 6 THR B2029 ASN B2032 -1 O LEU B2030 N ILE B2023 SHEET 3 C 6 ALA B2039 ILE B2046 -1 O ALA B2043 N THR B2029 SHEET 4 C 6 VAL B2142 LEU B2149 -1 O VAL B2142 N ILE B2046 SHEET 5 C 6 ALA B2169 ILE B2176 -1 O VAL B2173 N VAL B2145 SHEET 6 C 6 TYR B2185 ASP B2191 -1 O PHE B2190 N TYR B2170 SHEET 1 D 2 VAL B2085 HIS B2089 0 SHEET 2 D 2 ILE B2111 LYS B2115 -1 O GLN B2114 N ASP B2086 SSBOND 1 CYS A 1009 CYS A 1013 1555 1555 2.21 SSBOND 2 CYS A 1201 CYS A 1243 1555 1555 2.15 SSBOND 3 CYS B 2009 CYS B 2013 1555 1555 2.21 SSBOND 4 CYS B 2201 CYS B 2243 1555 1555 2.11 LINK OD1 ASN A1119 MG MG A2601 1555 1555 2.08 LINK MG MG A2601 O HOH A2701 1555 1555 2.07 LINK MG MG A2601 O HOH A2702 1555 1555 2.13 LINK MG MG A2601 O HOH A2703 1555 1555 2.08 LINK MG MG A2601 O HOH A2704 1555 1555 2.06 LINK MG MG A2601 O HOH A2705 1555 1555 2.10 LINK OD1 ASN B2119 MG MG B2301 1555 1555 2.04 LINK MG MG B2301 O HOH B2401 1555 1555 2.10 LINK MG MG B2301 O HOH B2402 1555 1555 2.09 LINK MG MG B2301 O HOH B2403 1555 1555 2.06 LINK MG MG B2301 O HOH B2404 1555 1555 2.10 LINK MG MG B2301 O HOH B2405 1555 1555 2.05 SITE 1 AC1 6 ASN A1119 HOH A2701 HOH A2702 HOH A2703 SITE 2 AC1 6 HOH A2704 HOH A2705 SITE 1 AC2 6 ALA A1169 ASP A1191 ARG A1213 HOH A2729 SITE 2 AC2 6 ASP B2208 LYS B2212 SITE 1 AC3 8 THR A1035 LYS A1037 LYS A1162 ALA A1163 SITE 2 AC3 8 HOH A2781 HOH A2782 HOH A2979 HOH A3023 SITE 1 AC4 6 ASN B2119 HOH B2401 HOH B2402 HOH B2403 SITE 2 AC4 6 HOH B2404 HOH B2405 SITE 1 AC5 9 ASN A1020 GLY B2054 ARG B2057 ALA B2094 SITE 2 AC5 9 HOH B2475 HOH B2592 HOH B2593 HOH B2630 SITE 3 AC5 9 HOH B2684 SITE 1 AC6 10 ASN A1020 ARG B2057 ARG B2087 HIS B2089 SITE 2 AC6 10 ASN B2119 HOH B2401 HOH B2402 HOH B2572 SITE 3 AC6 10 HOH B2712 HOH B2735 SITE 1 AC7 5 THR B2077 GLY B2078 ARG B2087 HOH B2517 SITE 2 AC7 5 HOH B2704 SITE 1 AC8 4 PRO B2051 ARG B2131 ILE B2134 ASP B2135 CRYST1 106.265 73.418 67.924 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009410 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013621 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014722 0.00000