HEADER ISOMERASE 13-MAR-12 4E4U TITLE CRYSTAL STRUCTURE OF A PUTATIVE MANDELATE RACEMASE/MUCONATE TITLE 2 LACTONIZING ENZYME (TARGET PSI-200780) FROM BURKHOLDERIA SAR-1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: MANDALATE RACEMASE/MUCONATE LACTONIZING ENZYME; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: UNIDENTIFIED; SOURCE 3 ORGANISM_TAXID: 32644; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS RACEMASE, MANDELATE RACEMASE, ALDOLASE, STRUCTURAL GENOMICS, PSI- KEYWDS 2 BIOLOGY, NEW YORK STRUCTURAL GENOMICS RESEARCH CONSORTIUM, NYSGRC, KEYWDS 3 ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR P.R.KUMAR,J.BONANNO,S.CHOWDHURY,R.FOTI,A.GIZZI,J.HAMMONDS, AUTHOR 2 B.HILLERICH,B.MATIKAINEN,R.SEIDEL,R.TORO,W.ZENCHECK,S.C.ALMO,NEW AUTHOR 3 YORK STRUCTURAL GENOMICS RESEARCH CONSORTIUM (NYSGRC) REVDAT 2 28-FEB-24 4E4U 1 REMARK REVDAT 1 18-APR-12 4E4U 0 JRNL AUTH P.R.KUMAR,J.BONANNO,S.CHOWDHURY,R.FOTI,A.GIZZI,J.HAMMONDS, JRNL AUTH 2 B.HILLERICH,B.MATIKAINEN,R.SEIDEL,R.TORO,W.ZENCHECK,S.C.ALMO JRNL TITL CRYSTAL STRUCTURE OF A PUTATIVE MR/ML ENZYME FROM JRNL TITL 2 BURKHOLDERIA SAR-1 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.7.3_928 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.64 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 94064 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.134 REMARK 3 R VALUE (WORKING SET) : 0.133 REMARK 3 FREE R VALUE : 0.146 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 4719 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.6555 - 4.1929 0.98 3154 175 0.1585 0.1382 REMARK 3 2 4.1929 - 3.3287 1.00 3061 176 0.1264 0.1260 REMARK 3 3 3.3287 - 2.9081 1.00 3030 167 0.1483 0.1500 REMARK 3 4 2.9081 - 2.6423 1.00 3027 149 0.1452 0.1588 REMARK 3 5 2.6423 - 2.4529 1.00 3031 150 0.1344 0.1312 REMARK 3 6 2.4529 - 2.3083 1.00 3017 150 0.1269 0.1440 REMARK 3 7 2.3083 - 2.1927 1.00 2982 150 0.1234 0.1332 REMARK 3 8 2.1927 - 2.0973 1.00 3017 156 0.1209 0.1485 REMARK 3 9 2.0973 - 2.0166 1.00 2951 168 0.1186 0.1553 REMARK 3 10 2.0166 - 1.9470 1.00 2963 163 0.1176 0.1347 REMARK 3 11 1.9470 - 1.8861 1.00 2963 168 0.1145 0.1521 REMARK 3 12 1.8861 - 1.8322 1.00 2976 174 0.1096 0.1383 REMARK 3 13 1.8322 - 1.7840 1.00 2978 127 0.1078 0.1456 REMARK 3 14 1.7840 - 1.7404 1.00 2998 153 0.1086 0.1424 REMARK 3 15 1.7404 - 1.7009 1.00 2963 148 0.1021 0.1443 REMARK 3 16 1.7009 - 1.6647 1.00 2958 166 0.1048 0.1351 REMARK 3 17 1.6647 - 1.6314 1.00 2974 149 0.1070 0.1439 REMARK 3 18 1.6314 - 1.6006 1.00 2949 176 0.1108 0.1535 REMARK 3 19 1.6006 - 1.5720 1.00 2943 157 0.1082 0.1446 REMARK 3 20 1.5720 - 1.5454 1.00 2948 159 0.1150 0.1427 REMARK 3 21 1.5454 - 1.5204 1.00 2972 151 0.1186 0.1423 REMARK 3 22 1.5204 - 1.4970 1.00 2954 162 0.1271 0.1724 REMARK 3 23 1.4970 - 1.4750 1.00 2966 139 0.1354 0.1603 REMARK 3 24 1.4750 - 1.4542 1.00 2954 161 0.1425 0.1674 REMARK 3 25 1.4542 - 1.4346 1.00 2944 153 0.1507 0.1812 REMARK 3 26 1.4346 - 1.4160 1.00 2967 153 0.1653 0.1839 REMARK 3 27 1.4160 - 1.3983 1.00 2916 163 0.1783 0.2001 REMARK 3 28 1.3983 - 1.3814 1.00 2963 142 0.1923 0.1926 REMARK 3 29 1.3814 - 1.3653 0.99 2926 177 0.2143 0.2329 REMARK 3 30 1.3653 - 1.3500 0.98 2900 137 0.2434 0.2773 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.98 REMARK 3 K_SOL : 0.39 REMARK 3 B_SOL : 44.33 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 12.400 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.26 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.87 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.12690 REMARK 3 B22 (A**2) : 0.12690 REMARK 3 B33 (A**2) : -0.25380 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 3315 REMARK 3 ANGLE : 1.124 4519 REMARK 3 CHIRALITY : 0.071 495 REMARK 3 PLANARITY : 0.005 591 REMARK 3 DIHEDRAL : 13.032 1231 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4E4U COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-MAR-12. REMARK 100 THE DEPOSITION ID IS D_1000071170. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-APR-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0750 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 181393 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.350 REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.08900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 16.0500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.39 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.01100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX 1.7.3_928 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN (20 MM HEPES, PH 7.5, 150 MM REMARK 280 NACL, 10% GLYCEROL; RESERVOIR (2.5M NACL, SODIUM ACETATE 4.5, REMARK 280 0.2M LI2SO4- WIZARD II #38); CRYOPROTECTION (LI2SO4), SITTING REMARK 280 DROP VAPOR DIFFUSION, TEMPERATURE 298K, VAPOR DIFFUSION, SITTING REMARK 280 DROP, PH 4.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 59.41750 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 59.41750 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 60.41950 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 59.41750 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 59.41750 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 60.41950 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 59.41750 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 59.41750 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 60.41950 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 59.41750 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 59.41750 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 60.41950 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 59.41750 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 59.41750 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 60.41950 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 59.41750 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 59.41750 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 60.41950 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 59.41750 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 59.41750 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 60.41950 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 59.41750 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 59.41750 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 60.41950 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS AN OCTAMER GENERATED BY REMARK 300 CRYSTALLOGRAPHIC SYMMETRY OPERATIONS REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 48150 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 84430 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -208.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 -120.83900 REMARK 350 BIOMT1 6 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 -120.83900 REMARK 350 BIOMT1 7 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 7 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 7 0.000000 0.000000 -1.000000 -120.83900 REMARK 350 BIOMT1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 8 0.000000 0.000000 -1.000000 -120.83900 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 601 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 774 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 776 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 827 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1011 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 404 REMARK 465 GLY A 405 REMARK 465 ALA A 406 REMARK 465 GLU A 407 REMARK 465 ASN A 408 REMARK 465 LEU A 409 REMARK 465 TYR A 410 REMARK 465 PHE A 411 REMARK 465 GLN A 412 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS A 151 S4 DTU A 501 2.09 REMARK 500 OH TYR A 130 O HOH A 1006 2.09 REMARK 500 O HOH A 775 O HOH A 874 2.15 REMARK 500 O HOH A 917 O HOH A 1008 2.17 REMARK 500 OE1 GLN A 246 O HOH A 706 2.18 REMARK 500 O HOH A 962 O HOH A 1015 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 941 O HOH A 948 3555 2.11 REMARK 500 O HOH A 786 O HOH A 874 3555 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 62 -35.29 -135.78 REMARK 500 THR A 83 -82.94 -112.13 REMARK 500 GLU A 234 63.27 35.78 REMARK 500 THR A 263 155.87 70.25 REMARK 500 GLN A 280 53.66 -102.04 REMARK 500 ASN A 312 -161.84 -171.15 REMARK 500 ASN A 329 40.43 -103.42 REMARK 500 MET A 337 -127.39 51.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DTU A 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGRC-200780 RELATED DB: TARGETTRACK DBREF 4E4U A 1 412 PDB 4E4U 4E4U 1 412 SEQRES 1 A 412 MET LYS ILE VAL SER LEU GLU THR HIS ILE VAL ALA VAL SEQRES 2 A 412 PRO PRO PRO HIS VAL GLY GLY MET TYR TRP ILE PHE VAL SEQRES 3 A 412 LYS LEU LYS THR ASP ASP GLY ILE GLU GLY VAL GLY GLU SEQRES 4 A 412 ILE TYR SER ALA THR PHE GLY PRO LYS ALA MET ALA PRO SEQRES 5 A 412 ILE ILE ASP ASP VAL PHE GLU ARG HIS LEU LEU ASN ARG SEQRES 6 A 412 ASP PRO HIS HIS VAL GLU ARG LEU PHE ARG GLN ALA TYR SEQRES 7 A 412 SER SER GLY PHE THR GLN ARG PRO ASP LEU THR MET MET SEQRES 8 A 412 GLY VAL VAL SER GLY LEU GLU MET ALA CYS TRP ASP ILE SEQRES 9 A 412 ILE GLY LYS ALA ALA ALA LYS PRO VAL TYR GLU LEU LEU SEQRES 10 A 412 GLY GLY ARG ILE HIS GLU ARG LEU ARG SER TYR THR TYR SEQRES 11 A 412 LEU TYR PRO LYS ASN ALA LYS GLY GLU TYR ASP TYR ASP SEQRES 12 A 412 ASP PRO ASP LEU ALA ALA GLU CYS ALA ALA GLU ASN VAL SEQRES 13 A 412 LYS LEU GLY PHE THR ALA VAL LYS PHE ASP PRO ALA GLY SEQRES 14 A 412 PRO TYR THR ALA TYR SER GLY HIS GLN LEU SER LEU GLU SEQRES 15 A 412 VAL LEU ASP ARG CYS GLU LEU PHE CYS ARG ARG VAL ARG SEQRES 16 A 412 GLU ALA VAL GLY SER LYS ALA ASP LEU LEU PHE GLY THR SEQRES 17 A 412 HIS GLY GLN MET VAL PRO SER SER ALA ILE ARG LEU ALA SEQRES 18 A 412 LYS ARG LEU GLU LYS TYR ASP PRO LEU TRP PHE GLU GLU SEQRES 19 A 412 PRO VAL PRO PRO GLY GLN GLU GLU ALA ILE ALA GLN VAL SEQRES 20 A 412 ALA LYS HIS THR SER ILE PRO ILE ALA THR GLY GLU ARG SEQRES 21 A 412 LEU THR THR LYS TYR GLU PHE HIS LYS LEU LEU GLN ALA SEQRES 22 A 412 GLY GLY ALA SER ILE LEU GLN LEU ASN VAL ALA ARG VAL SEQRES 23 A 412 GLY GLY LEU LEU GLU ALA LYS LYS ILE ALA THR LEU ALA SEQRES 24 A 412 GLU VAL HIS TYR ALA GLN ILE ALA PRO HIS LEU TYR ASN SEQRES 25 A 412 GLY PRO VAL GLY ALA ALA ALA SER ILE GLN LEU ALA THR SEQRES 26 A 412 CYS THR PRO ASN PHE LEU ILE GLN GLU SER ILE MET THR SEQRES 27 A 412 TRP GLY GLY PHE HIS ALA GLU VAL VAL LYS THR PRO ILE SEQRES 28 A 412 ARG TRP GLU ASP GLY TYR ILE ILE PRO SER ASN GLU PRO SEQRES 29 A 412 GLY LEU GLY ILE GLU LEU ASP MET ASP VAL VAL LYS ARG SEQRES 30 A 412 HIS THR PRO TYR THR GLY GLU ARG LEU HIS LEU GLN MET SEQRES 31 A 412 GLY GLU HIS PRO VAL ASP VAL LYS ASP LEU ALA PRO ALA SEQRES 32 A 412 LYS GLY ALA GLU ASN LEU TYR PHE GLN HET DTU A 501 8 HETNAM DTU (2R,3S)-1,4-DIMERCAPTOBUTANE-2,3-DIOL FORMUL 2 DTU C4 H10 O2 S2 FORMUL 3 HOH *424(H2 O) HELIX 1 1 GLY A 46 LEU A 62 1 17 HELIX 2 2 HIS A 69 SER A 80 1 12 HELIX 3 3 ASP A 87 ALA A 110 1 24 HELIX 4 4 PRO A 112 LEU A 116 5 5 HELIX 5 5 ASP A 144 GLY A 159 1 16 HELIX 6 6 SER A 180 GLY A 199 1 20 HELIX 7 7 VAL A 213 GLU A 225 1 13 HELIX 8 8 LYS A 226 ASP A 228 5 3 HELIX 9 9 GLN A 240 HIS A 250 1 11 HELIX 10 10 THR A 262 ALA A 273 1 12 HELIX 11 11 GLY A 288 HIS A 302 1 15 HELIX 12 12 GLY A 313 CYS A 326 1 14 HELIX 13 13 GLY A 340 VAL A 346 1 7 HELIX 14 14 ASP A 371 HIS A 378 1 8 SHEET 1 A 3 ILE A 3 ALA A 12 0 SHEET 2 A 3 TYR A 22 THR A 30 -1 O PHE A 25 N HIS A 9 SHEET 3 A 3 GLU A 35 ILE A 40 -1 O GLY A 36 N LEU A 28 SHEET 1 B 8 GLN A 305 ILE A 306 0 SHEET 2 B 8 ILE A 278 LEU A 279 1 N LEU A 279 O GLN A 305 SHEET 3 B 8 ILE A 255 THR A 257 1 N THR A 257 O ILE A 278 SHEET 4 B 8 TRP A 231 GLU A 233 1 N PHE A 232 O ALA A 256 SHEET 5 B 8 ASP A 203 PHE A 206 1 N PHE A 206 O GLU A 233 SHEET 6 B 8 ALA A 162 PHE A 165 1 N VAL A 163 O LEU A 205 SHEET 7 B 8 LEU A 125 TYR A 130 1 N THR A 129 O LYS A 164 SHEET 8 B 8 GLN A 333 SER A 335 1 O SER A 335 N TYR A 128 SHEET 1 C 9 GLN A 305 ILE A 306 0 SHEET 2 C 9 ILE A 278 LEU A 279 1 N LEU A 279 O GLN A 305 SHEET 3 C 9 ILE A 255 THR A 257 1 N THR A 257 O ILE A 278 SHEET 4 C 9 TRP A 231 GLU A 233 1 N PHE A 232 O ALA A 256 SHEET 5 C 9 ASP A 203 PHE A 206 1 N PHE A 206 O GLU A 233 SHEET 6 C 9 ALA A 162 PHE A 165 1 N VAL A 163 O LEU A 205 SHEET 7 C 9 LEU A 125 TYR A 130 1 N THR A 129 O LYS A 164 SHEET 8 C 9 TYR A 357 ILE A 359 -1 O ILE A 358 N LEU A 125 SHEET 9 C 9 ARG A 352 GLU A 354 -1 N GLU A 354 O TYR A 357 CISPEP 1 PRO A 15 PRO A 16 0 5.76 CISPEP 2 SER A 175 GLY A 176 0 5.80 CISPEP 3 THR A 379 PRO A 380 0 2.90 SITE 1 AC1 9 TYR A 132 CYS A 151 GLU A 154 ASN A 155 SITE 2 AC1 9 LEU A 158 PRO A 350 HOH A 707 HOH A 843 SITE 3 AC1 9 HOH A 900 CRYST1 118.835 118.835 120.839 90.00 90.00 90.00 I 4 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008415 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008415 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008275 0.00000