HEADER OXIDOREDUCTASE 13-MAR-12 4E4Z TITLE OXIDIZED (CU2+) PEPTIDYLGLYCINE ALPHA-HYDROXYLATING MONOOXYGENASE TITLE 2 (PHM) IN COMPLEX WITH HYDROGEN PEROXIDE (1.98 A) COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEPTIDYL-GLYCINE ALPHA-AMIDATING MONOOXYGENASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 45-356; COMPND 5 SYNONYM: PAM, PEPTIDYLGLYCINE ALPHA-HYDROXYLATING MONOOXYGENASE, PHM, COMPND 6 PEPTIDYL-ALPHA-HYDROXYGLYCINE ALPHA-AMIDATING LYASE, COMPND 7 PEPTIDYLAMIDOGLYCOLATE LYASE, PAL; COMPND 8 EC: 1.14.17.3; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: BROWN RAT,RAT,RATS; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: PAM; SOURCE 6 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 10029 KEYWDS CATALYSIS, MIXED FUNCTION OXYGENASES, MULTIENZYME COMPLEXES, KEYWDS 2 STEREOISOMERISM, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR K.RUDZKA,L.M.AMZEL REVDAT 3 15-NOV-17 4E4Z 1 REMARK REVDAT 2 03-JUL-13 4E4Z 1 JRNL REVDAT 1 23-JAN-13 4E4Z 0 JRNL AUTH K.RUDZKA,D.M.MORENO,B.EIPPER,R.MAINS,D.A.ESTRIN,L.M.AMZEL JRNL TITL COORDINATION OF PEROXIDE TO THE CU(M) CENTER OF JRNL TITL 2 PEPTIDYLGLYCINE ALPHA-HYDROXYLATING MONOOXYGENASE (PHM): JRNL TITL 3 STRUCTURAL AND COMPUTATIONAL STUDY. JRNL REF J.BIOL.INORG.CHEM. V. 18 223 2013 JRNL REFN ISSN 0949-8257 JRNL PMID 23247335 JRNL DOI 10.1007/S00775-012-0967-Z REMARK 2 REMARK 2 RESOLUTION. 1.98 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.98 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 23.22 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 3 NUMBER OF REFLECTIONS : 26633 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.244 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1351 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.98 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.03 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1591 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 90.40 REMARK 3 BIN R VALUE (WORKING SET) : 0.2770 REMARK 3 BIN FREE R VALUE SET COUNT : 75 REMARK 3 BIN FREE R VALUE : 0.3750 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2433 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 29 REMARK 3 SOLVENT ATOMS : 149 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.41 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.80000 REMARK 3 B22 (A**2) : -2.64000 REMARK 3 B33 (A**2) : 1.84000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.174 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.160 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.119 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.252 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.943 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2537 ; 0.009 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3435 ; 1.216 ; 1.958 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 311 ; 6.696 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 108 ;34.819 ;23.148 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 392 ;14.814 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 15 ;17.341 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 374 ; 0.086 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1932 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES: REFINED INDIVIDUALLY REMARK 4 REMARK 4 4E4Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-MAR-12. REMARK 100 THE DEPOSITION ID IS D_1000071175. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-APR-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X6A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26738 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.970 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 200 DATA REDUNDANCY : 11.80 REMARK 200 R MERGE (I) : 0.06300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.97 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.1 REMARK 200 DATA REDUNDANCY IN SHELL : 9.40 REMARK 200 R MERGE FOR SHELL (I) : 0.69200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: FOURIER SYNTHESIS REMARK 200 SOFTWARE USED: FOURIER SYNTHESIS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.26 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.75 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 5.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 34.25150 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 40.73600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.25650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 40.73600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 34.25150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 34.25650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 518 O HOH A 554 4556 2.16 REMARK 500 O HOH A 562 O HOH A 586 3646 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 58 -157.97 -164.37 REMARK 500 ASP A 127 47.33 -69.34 REMARK 500 GLU A 128 31.91 82.77 REMARK 500 ILE A 176 31.36 -94.66 REMARK 500 ALA A 178 -12.39 64.57 REMARK 500 HIS A 244 -153.57 -95.42 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 403 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 547 O REMARK 620 2 HIS A 235 NE2 93.7 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 401 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 107 ND1 REMARK 620 2 HIS A 108 ND1 150.5 REMARK 620 3 HIS A 172 ND1 104.3 101.3 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 402 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 PEO A 404 O2 REMARK 620 2 HIS A 242 NE2 141.8 REMARK 620 3 HIS A 244 NE2 91.7 108.7 REMARK 620 4 PEO A 404 O1 43.6 107.0 134.9 REMARK 620 5 MET A 314 SD 96.4 104.5 112.6 83.6 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEO A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 408 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1PHM RELATED DB: PDB REMARK 900 RELATED ID: 1OPM RELATED DB: PDB REMARK 900 RELATED ID: 1SDW RELATED DB: PDB REMARK 900 RELATED ID: 3MIB RELATED DB: PDB REMARK 900 RELATED ID: 3MIK RELATED DB: PDB REMARK 900 RELATED ID: 3MLK RELATED DB: PDB DBREF 4E4Z A 45 356 UNP P14925 AMD_RAT 45 356 SEQRES 1 A 312 ASN GLU CYS LEU GLY THR ILE GLY PRO VAL THR PRO LEU SEQRES 2 A 312 ASP ALA SER ASP PHE ALA LEU ASP ILE ARG MET PRO GLY SEQRES 3 A 312 VAL THR PRO LYS GLU SER ASP THR TYR PHE CYS MET SER SEQRES 4 A 312 MET ARG LEU PRO VAL ASP GLU GLU ALA PHE VAL ILE ASP SEQRES 5 A 312 PHE LYS PRO ARG ALA SER MET ASP THR VAL HIS HIS MET SEQRES 6 A 312 LEU LEU PHE GLY CYS ASN MET PRO SER SER THR GLY SER SEQRES 7 A 312 TYR TRP PHE CYS ASP GLU GLY THR CYS THR ASP LYS ALA SEQRES 8 A 312 ASN ILE LEU TYR ALA TRP ALA ARG ASN ALA PRO PRO THR SEQRES 9 A 312 ARG LEU PRO LYS GLY VAL GLY PHE ARG VAL GLY GLY GLU SEQRES 10 A 312 THR GLY SER LYS TYR PHE VAL LEU GLN VAL HIS TYR GLY SEQRES 11 A 312 ASP ILE SER ALA PHE ARG ASP ASN HIS LYS ASP CYS SER SEQRES 12 A 312 GLY VAL SER VAL HIS LEU THR ARG VAL PRO GLN PRO LEU SEQRES 13 A 312 ILE ALA GLY MET TYR LEU MET MET SER VAL ASP THR VAL SEQRES 14 A 312 ILE PRO PRO GLY GLU LYS VAL VAL ASN ALA ASP ILE SER SEQRES 15 A 312 CYS GLN TYR LYS MET TYR PRO MET HIS VAL PHE ALA TYR SEQRES 16 A 312 ARG VAL HIS THR HIS HIS LEU GLY LYS VAL VAL SER GLY SEQRES 17 A 312 TYR ARG VAL ARG ASN GLY GLN TRP THR LEU ILE GLY ARG SEQRES 18 A 312 GLN ASN PRO GLN LEU PRO GLN ALA PHE TYR PRO VAL GLU SEQRES 19 A 312 HIS PRO VAL ASP VAL THR PHE GLY ASP ILE LEU ALA ALA SEQRES 20 A 312 ARG CYS VAL PHE THR GLY GLU GLY ARG THR GLU ALA THR SEQRES 21 A 312 HIS ILE GLY GLY THR SER SER ASP GLU MET CYS ASN LEU SEQRES 22 A 312 TYR ILE MET TYR TYR MET GLU ALA LYS TYR ALA LEU SER SEQRES 23 A 312 PHE MET THR CYS THR LYS ASN VAL ALA PRO ASP MET PHE SEQRES 24 A 312 ARG THR ILE PRO ALA GLU ALA ASN ILE PRO ILE PRO VAL HET CU A 401 1 HET CU A 402 1 HET NI A 403 1 HET PEO A 404 2 HET GOL A 405 6 HET GOL A 406 6 HET GOL A 407 6 HET GOL A 408 6 HETNAM CU COPPER (II) ION HETNAM NI NICKEL (II) ION HETNAM PEO HYDROGEN PEROXIDE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 CU 2(CU 2+) FORMUL 4 NI NI 2+ FORMUL 5 PEO H2 O2 FORMUL 6 GOL 4(C3 H8 O3) FORMUL 10 HOH *149(H2 O) HELIX 1 1 LEU A 48 GLY A 52 5 5 HELIX 2 2 ALA A 339 ILE A 346 5 8 HELIX 3 3 PRO A 347 ASN A 351 5 5 SHEET 1 A 9 VAL A 54 PRO A 56 0 SHEET 2 A 9 ASP A 61 ARG A 67 -1 O ALA A 63 N THR A 55 SHEET 3 A 9 GLY A 188 THR A 194 -1 O VAL A 191 N LEU A 64 SHEET 4 A 9 ALA A 92 ARG A 100 -1 N LYS A 98 O SER A 190 SHEET 5 A 9 VAL A 154 VAL A 158 -1 O VAL A 158 N ALA A 92 SHEET 6 A 9 LEU A 200 MET A 208 1 O LEU A 200 N GLY A 155 SHEET 7 A 9 ASN A 316 GLU A 324 -1 O ILE A 319 N TYR A 205 SHEET 8 A 9 MET A 234 HIS A 242 -1 N ARG A 240 O TYR A 318 SHEET 9 A 9 TYR A 275 VAL A 283 -1 O TYR A 275 N TYR A 239 SHEET 1 B 7 VAL A 54 PRO A 56 0 SHEET 2 B 7 ASP A 61 ARG A 67 -1 O ALA A 63 N THR A 55 SHEET 3 B 7 GLY A 188 THR A 194 -1 O VAL A 191 N LEU A 64 SHEET 4 B 7 ALA A 92 ARG A 100 -1 N LYS A 98 O SER A 190 SHEET 5 B 7 VAL A 154 VAL A 158 -1 O VAL A 158 N ALA A 92 SHEET 6 B 7 LEU A 200 MET A 208 1 O LEU A 200 N GLY A 155 SHEET 7 B 7 PHE A 331 CYS A 334 1 O MET A 332 N LEU A 206 SHEET 1 C 5 TRP A 124 PHE A 125 0 SHEET 2 C 5 TYR A 79 ARG A 85 -1 N CYS A 81 O TRP A 124 SHEET 3 C 5 TYR A 166 HIS A 172 -1 O VAL A 171 N PHE A 80 SHEET 4 C 5 HIS A 108 CYS A 114 -1 N LEU A 110 O GLN A 170 SHEET 5 C 5 ASN A 136 ALA A 142 -1 O ASN A 136 N GLY A 113 SHEET 1 D 2 VAL A 213 ILE A 214 0 SHEET 2 D 2 THR A 304 HIS A 305 -1 O THR A 304 N ILE A 214 SHEET 1 E 4 VAL A 221 GLN A 228 0 SHEET 2 E 4 ILE A 288 PHE A 295 -1 O PHE A 295 N VAL A 221 SHEET 3 E 4 GLY A 247 ARG A 256 -1 N VAL A 255 O ILE A 288 SHEET 4 E 4 GLN A 259 GLN A 266 -1 O THR A 261 N ARG A 254 SSBOND 1 CYS A 47 CYS A 186 1555 1555 2.04 SSBOND 2 CYS A 81 CYS A 126 1555 1555 2.02 SSBOND 3 CYS A 114 CYS A 131 1555 1555 2.05 SSBOND 4 CYS A 227 CYS A 334 1555 1555 2.05 SSBOND 5 CYS A 293 CYS A 315 1555 1555 2.03 LINK NI NI A 403 O HOH A 547 1555 1555 1.86 LINK ND1 HIS A 107 CU CU A 401 1555 1555 1.93 LINK CU CU A 402 O2 PEO A 404 1555 1555 1.98 LINK NE2 HIS A 242 CU CU A 402 1555 1555 2.03 LINK ND1 HIS A 108 CU CU A 401 1555 1555 2.05 LINK NE2 HIS A 244 CU CU A 402 1555 1555 2.07 LINK CU CU A 402 O1 PEO A 404 1555 1555 2.09 LINK NE2 HIS A 235 NI NI A 403 1555 1555 2.12 LINK ND1 HIS A 172 CU CU A 401 1555 1555 2.15 LINK SD MET A 314 CU CU A 402 1555 1555 2.40 SITE 1 AC1 3 HIS A 107 HIS A 108 HIS A 172 SITE 1 AC2 5 HIS A 242 HIS A 244 MET A 314 PEO A 404 SITE 2 AC2 5 HOH A 539 SITE 1 AC3 3 HIS A 235 HIS A 305 HOH A 547 SITE 1 AC4 6 GLU A 128 HIS A 242 HIS A 244 MET A 314 SITE 2 AC4 6 CU A 402 HOH A 539 SITE 1 AC5 7 LEU A 138 TYR A 139 THR A 148 MET A 320 SITE 2 AC5 7 HOH A 546 HOH A 559 HOH A 567 SITE 1 AC6 7 TYR A 205 GLN A 228 TYR A 229 LYS A 230 SITE 2 AC6 7 MET A 231 THR A 333 HOH A 644 SITE 1 AC7 7 VAL A 255 ARG A 256 ASN A 257 GLY A 258 SITE 2 AC7 7 GLY A 286 ILE A 288 HOH A 621 SITE 1 AC8 8 GLY A 113 ASN A 136 LEU A 138 ARG A 157 SITE 2 AC8 8 GLY A 163 SER A 164 HOH A 589 HOH A 590 CRYST1 68.503 68.513 81.472 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014598 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014596 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012274 0.00000