HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 14-MAR-12 4E5V TITLE CRYSTAL STRUCTURE OF A PUTATIVE THUA-LIKE PROTEIN (PARMER_02418) FROM TITLE 2 PARABACTEROIDES MERDAE ATCC 43184 AT 1.75 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE THUA-LIKE PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PARABACTEROIDES MERDAE; SOURCE 3 ORGANISM_TAXID: 411477; SOURCE 4 STRAIN: ATCC 43184; SOURCE 5 GENE: PARMER_02418; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: PB1; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS THUA-LIKE PROTEINS, TREHALOSE UTILISATION, STRUCTURAL GENOMICS, JOINT KEYWDS 2 CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, KEYWDS 3 PSI-BIOLOGY, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 4 01-FEB-23 4E5V 1 REMARK SEQADV LINK REVDAT 3 24-JAN-18 4E5V 1 JRNL REVDAT 2 15-NOV-17 4E5V 1 REMARK REVDAT 1 04-APR-12 4E5V 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF A PUTATIVE THUA-LIKE PROTEIN JRNL TITL 2 (PARMER_02418) FROM PARABACTEROIDES MERDAE ATCC 43184 AT JRNL TITL 3 1.75 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER-TNT 2.10.0 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SMART,VONRHEIN,WOMACK, REMARK 3 : MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.83 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.8 REMARK 3 NUMBER OF REFLECTIONS : 51539 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.149 REMARK 3 R VALUE (WORKING SET) : 0.148 REMARK 3 FREE R VALUE : 0.174 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.040 REMARK 3 FREE R VALUE TEST SET COUNT : 2597 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 1.79 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.81 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 3915 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.1966 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3734 REMARK 3 BIN R VALUE (WORKING SET) : 0.1959 REMARK 3 BIN FREE R VALUE : 0.2113 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.62 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 181 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4429 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 66 REMARK 3 SOLVENT ATOMS : 641 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 15.74 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.56 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.13890 REMARK 3 B22 (A**2) : -3.70320 REMARK 3 B33 (A**2) : 3.84210 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.08340 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.164 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.944 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 4764 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 6470 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 2192 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 134 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 720 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 4764 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 2 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 579 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 6035 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 0.98 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 4.49 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 2.65 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: {A|25 - 157} REMARK 3 ORIGIN FOR THE GROUP (A): -3.8971 6.6365 73.4464 REMARK 3 T TENSOR REMARK 3 T11: -0.0277 T22: -0.0156 REMARK 3 T33: -0.0124 T12: 0.0033 REMARK 3 T13: 0.0131 T23: 0.0169 REMARK 3 L TENSOR REMARK 3 L11: 0.4776 L22: 0.4795 REMARK 3 L33: 0.5683 L12: -0.0175 REMARK 3 L13: 0.1567 L23: -0.2792 REMARK 3 S TENSOR REMARK 3 S11: 0.0152 S12: -0.0600 S13: -0.0515 REMARK 3 S21: 0.0482 S22: 0.0353 S23: 0.0359 REMARK 3 S31: 0.0126 S32: -0.0624 S33: -0.0505 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: {A|158 - 304} REMARK 3 ORIGIN FOR THE GROUP (A): 2.3418 18.5289 64.3692 REMARK 3 T TENSOR REMARK 3 T11: -0.0248 T22: -0.0202 REMARK 3 T33: -0.0129 T12: 0.0024 REMARK 3 T13: 0.0062 T23: -0.0003 REMARK 3 L TENSOR REMARK 3 L11: 0.4906 L22: 0.3636 REMARK 3 L33: 0.5333 L12: 0.0057 REMARK 3 L13: -0.0001 L23: -0.2580 REMARK 3 S TENSOR REMARK 3 S11: -0.0076 S12: -0.0127 S13: 0.0240 REMARK 3 S21: 0.0450 S22: 0.0128 S23: -0.0039 REMARK 3 S31: -0.0474 S32: -0.0193 S33: -0.0052 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: {B|26 - 157} REMARK 3 ORIGIN FOR THE GROUP (A): 9.5800 39.5592 26.9054 REMARK 3 T TENSOR REMARK 3 T11: -0.0296 T22: -0.0221 REMARK 3 T33: -0.0155 T12: -0.0046 REMARK 3 T13: 0.0047 T23: 0.0077 REMARK 3 L TENSOR REMARK 3 L11: 0.2453 L22: 0.4163 REMARK 3 L33: 1.0632 L12: 0.0006 REMARK 3 L13: -0.0624 L23: -0.2745 REMARK 3 S TENSOR REMARK 3 S11: 0.0074 S12: 0.0195 S13: 0.0157 REMARK 3 S21: -0.0327 S22: 0.0248 S23: -0.0030 REMARK 3 S31: -0.0492 S32: -0.0481 S33: -0.0322 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: {B|158 - 304} REMARK 3 ORIGIN FOR THE GROUP (A): 2.9059 34.8235 41.0722 REMARK 3 T TENSOR REMARK 3 T11: -0.0364 T22: -0.0132 REMARK 3 T33: -0.0088 T12: -0.0008 REMARK 3 T13: 0.0002 T23: 0.0074 REMARK 3 L TENSOR REMARK 3 L11: 0.2143 L22: 0.5080 REMARK 3 L33: 0.6952 L12: 0.0675 REMARK 3 L13: -0.1887 L23: -0.2870 REMARK 3 S TENSOR REMARK 3 S11: 0.0073 S12: -0.0193 S13: 0.0027 REMARK 3 S21: 0.0226 S22: 0.0323 S23: 0.0166 REMARK 3 S31: -0.0401 S32: -0.0845 S33: -0.0397 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. ATOM RECORD CONTAINS SUM OF TLS AND REMARK 3 RESIDUAL B FACTORS. ANISOU RECORD CONTAINS SUM OF TLS AND REMARK 3 RESIDUAL U FACTORS. 2. A MET-INHIBITION PROTOCOL WAS USED FOR REMARK 3 SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE REMARK 3 OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 TO ACCOUNT FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL REMARK 3 S-MET INCORPORATION. 3. 1,2 ETHANEDIOL (EDO) FROM THE REMARK 3 CRYOPROTECTANT AND FROM THE CRYSTALLIZATION CONDITION HAVE BEEN REMARK 3 MODELED IN THE SOLVENT STRUCTURE. 4. ZINC IONS ARE MODELED IN REMARK 3 THE STRUCTURE. THE ASSIGNMENT OF ZINC IS SUPPORTED BY REMARK 3 COORDINATION GEOMETRY, ANOMALOUS DIFFERENCE FOURIER MAPS AND X- REMARK 3 RAY FLUORESCENCE SCANS (WHICH SHOWED A PEAK FOR ZINC). ZINC WAS REMARK 3 NOT ADDED DURING CRYSTALLIZATION OR PURIFICATION AND CO-PURIFIED REMARK 3 WITH THE PROTEIN. 5. NCS RESTRAINTS WERE APPLIED USING BUSTER'S REMARK 3 LSSR RESTRAINT REPRESENTATION (-AUTONCS). 6. THE MAD PHASES WERE REMARK 3 USED AS RESTRAINTS DURING REFINEMENT. REMARK 4 REMARK 4 4E5V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-MAR-12. REMARK 100 THE DEPOSITION ID IS D_1000071207. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-DEC-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91837, 0.97941, 0.97882 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING); REMARK 200 SINGLE CRYSTAL SI(111) BENT REMARK 200 MONOCHROMATOR (HORIZONTAL REMARK 200 FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE DECEMBER 6, 2010 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51578 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 29.832 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 81.3 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.06600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.2400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.81 REMARK 200 COMPLETENESS FOR SHELL (%) : 80.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.36600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHARP, SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: DATA WERE SCALED USING XSCALE WITH FRIEDEL PAIRS KEPT AS REMARK 200 SEPARATE WHEN COMPUTING R-SYM, COMPLETENESS AND REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20.00% POLYETHYLENE GLYCOL 3350, REMARK 280 0.200M AMMONIUM FLUORIDE, NANODROP, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 47.68500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 GLY B 0 REMARK 465 ARG B 25 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 25 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 26 CG CD CE NZ REMARK 470 LYS A 29 CE NZ REMARK 470 LYS A 124 CD CE NZ REMARK 470 LYS A 180 CE NZ REMARK 470 LYS A 284 CD CE NZ REMARK 470 LYS A 287 CD CE NZ REMARK 470 LYS B 26 CG CD CE NZ REMARK 470 LYS B 29 NZ REMARK 470 LYS B 280 CE NZ REMARK 470 LYS B 284 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 37 144.33 -176.40 REMARK 500 HIS A 116 -117.81 44.43 REMARK 500 ALA A 133 -45.85 73.39 REMARK 500 TRP A 137 -164.99 63.65 REMARK 500 ASN A 141 -156.42 -159.56 REMARK 500 ARG A 210 -71.87 -84.58 REMARK 500 ASN A 223 32.49 72.84 REMARK 500 ASN A 257 52.42 -150.57 REMARK 500 ASN B 37 145.15 -174.88 REMARK 500 HIS B 116 -118.34 44.37 REMARK 500 ALA B 133 -43.92 73.45 REMARK 500 TRP B 137 -166.26 63.71 REMARK 500 ASN B 141 -157.54 -157.44 REMARK 500 ARG B 210 -71.51 -84.59 REMARK 500 ASN B 223 31.98 73.90 REMARK 500 ASN B 257 52.72 -150.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 39 NE2 REMARK 620 2 HIS A 116 NE2 98.8 REMARK 620 3 GLU A 198 OE1 163.6 92.0 REMARK 620 4 HIS A 249 ND1 96.0 113.8 90.7 REMARK 620 5 EDO A 403 O2 79.8 96.5 86.8 149.7 REMARK 620 6 HOH A 700 O 79.5 161.3 86.3 84.9 64.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 39 NE2 REMARK 620 2 HIS B 116 NE2 97.3 REMARK 620 3 GLU B 198 OE1 162.2 92.4 REMARK 620 4 HIS B 249 ND1 97.2 114.9 92.2 REMARK 620 5 HOH B 556 O 81.8 155.1 83.1 89.8 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 409 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 410 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: JCSG-419184 RELATED DB: TARGETTRACK REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING REMARK 999 ONLY A GLYCINE (0) FOLLOWED BY RESIDUES 25-304 OF THE TARGET REMARK 999 SEQUENCE. DBREF 4E5V A 25 304 UNP A7AG74 A7AG74_9PORP 25 304 DBREF 4E5V B 25 304 UNP A7AG74 A7AG74_9PORP 25 304 SEQADV 4E5V GLY A 0 UNP A7AG74 EXPRESSION TAG SEQADV 4E5V GLY B 0 UNP A7AG74 EXPRESSION TAG SEQRES 1 A 281 GLY ARG LYS PRO ILE LYS THR LEU LEU ILE THR GLY GLN SEQRES 2 A 281 ASN ASN HIS ASN TRP GLN VAL SER HIS VAL VAL LEU LYS SEQRES 3 A 281 GLN ILE LEU GLU ASN SER GLY ARG PHE ASP VAL ASP PHE SEQRES 4 A 281 VAL ILE SER PRO GLU GLN GLY LYS ASP MSE SER GLY PHE SEQRES 5 A 281 VAL LEU ASP PHE SER PRO TYR GLN LEU VAL VAL LEU ASP SEQRES 6 A 281 TYR ASN GLY ASP SER TRP PRO GLU GLU THR ASN ARG ARG SEQRES 7 A 281 PHE LEU GLU TYR VAL GLN ASN GLY GLY GLY VAL VAL ILE SEQRES 8 A 281 TYR HIS ALA ALA ASP ASN ALA PHE SER LYS TRP PRO GLU SEQRES 9 A 281 PHE ASN ARG ILE CYS ALA LEU GLY GLY TRP GLU GLY ARG SEQRES 10 A 281 ASN GLU ASN SER GLY PRO TYR VAL TYR TRP LYS ASP GLY SEQRES 11 A 281 LYS LEU VAL LYS ASP SER SER ALA GLY PRO GLY GLY SER SEQRES 12 A 281 HIS GLY ARG GLN HIS GLU TYR VAL LEU ASN GLY ARG ASP SEQRES 13 A 281 LYS VAL HIS PRO VAL VAL LYS GLY LEU PRO LEU LYS TRP SEQRES 14 A 281 ARG HIS ALA LYS ASP GLU LEU TYR ASP ARG MSE ARG GLY SEQRES 15 A 281 PRO GLY ASN ILE ARG ASP ILE LEU TYR THR ALA TYR SER SEQRES 16 A 281 ASP LYS GLU THR ASN GLY SER GLY ARG GLU GLU PRO LEU SEQRES 17 A 281 VAL PHE THR VAL ASP TYR GLY ASN ALA ARG ILE PHE HIS SEQRES 18 A 281 THR MSE LEU GLY HIS ALA GLY ALA THR THR GLU ASP ASN SEQRES 19 A 281 ILE ALA MSE GLN CYS THR GLY PHE GLN VAL LEU LEU LEU SEQRES 20 A 281 ARG GLY ALA GLU TRP ALA ALA THR GLY LYS VAL THR GLN SEQRES 21 A 281 LYS VAL PRO LYS ASP PHE PRO THR GLU THR THR CYS SER SEQRES 22 A 281 TYR ARG LYS ASP TYR LYS GLU ASN SEQRES 1 B 281 GLY ARG LYS PRO ILE LYS THR LEU LEU ILE THR GLY GLN SEQRES 2 B 281 ASN ASN HIS ASN TRP GLN VAL SER HIS VAL VAL LEU LYS SEQRES 3 B 281 GLN ILE LEU GLU ASN SER GLY ARG PHE ASP VAL ASP PHE SEQRES 4 B 281 VAL ILE SER PRO GLU GLN GLY LYS ASP MSE SER GLY PHE SEQRES 5 B 281 VAL LEU ASP PHE SER PRO TYR GLN LEU VAL VAL LEU ASP SEQRES 6 B 281 TYR ASN GLY ASP SER TRP PRO GLU GLU THR ASN ARG ARG SEQRES 7 B 281 PHE LEU GLU TYR VAL GLN ASN GLY GLY GLY VAL VAL ILE SEQRES 8 B 281 TYR HIS ALA ALA ASP ASN ALA PHE SER LYS TRP PRO GLU SEQRES 9 B 281 PHE ASN ARG ILE CYS ALA LEU GLY GLY TRP GLU GLY ARG SEQRES 10 B 281 ASN GLU ASN SER GLY PRO TYR VAL TYR TRP LYS ASP GLY SEQRES 11 B 281 LYS LEU VAL LYS ASP SER SER ALA GLY PRO GLY GLY SER SEQRES 12 B 281 HIS GLY ARG GLN HIS GLU TYR VAL LEU ASN GLY ARG ASP SEQRES 13 B 281 LYS VAL HIS PRO VAL VAL LYS GLY LEU PRO LEU LYS TRP SEQRES 14 B 281 ARG HIS ALA LYS ASP GLU LEU TYR ASP ARG MSE ARG GLY SEQRES 15 B 281 PRO GLY ASN ILE ARG ASP ILE LEU TYR THR ALA TYR SER SEQRES 16 B 281 ASP LYS GLU THR ASN GLY SER GLY ARG GLU GLU PRO LEU SEQRES 17 B 281 VAL PHE THR VAL ASP TYR GLY ASN ALA ARG ILE PHE HIS SEQRES 18 B 281 THR MSE LEU GLY HIS ALA GLY ALA THR THR GLU ASP ASN SEQRES 19 B 281 ILE ALA MSE GLN CYS THR GLY PHE GLN VAL LEU LEU LEU SEQRES 20 B 281 ARG GLY ALA GLU TRP ALA ALA THR GLY LYS VAL THR GLN SEQRES 21 B 281 LYS VAL PRO LYS ASP PHE PRO THR GLU THR THR CYS SER SEQRES 22 B 281 TYR ARG LYS ASP TYR LYS GLU ASN MODRES 4E5V MSE A 72 MET SELENOMETHIONINE MODRES 4E5V MSE A 203 MET SELENOMETHIONINE MODRES 4E5V MSE A 246 MET SELENOMETHIONINE MODRES 4E5V MSE A 260 MET SELENOMETHIONINE MODRES 4E5V MSE B 72 MET SELENOMETHIONINE MODRES 4E5V MSE B 203 MET SELENOMETHIONINE MODRES 4E5V MSE B 246 MET SELENOMETHIONINE MODRES 4E5V MSE B 260 MET SELENOMETHIONINE HET MSE A 72 8 HET MSE A 203 8 HET MSE A 246 8 HET MSE A 260 8 HET MSE B 72 8 HET MSE B 203 8 HET MSE B 246 8 HET MSE B 260 8 HET ZN A 401 1 HET EDO A 402 4 HET EDO A 403 4 HET EDO A 404 4 HET EDO A 405 4 HET EDO A 406 4 HET EDO A 407 4 HET EDO A 408 4 HET ZN B 401 1 HET EDO B 402 4 HET EDO B 403 4 HET EDO B 404 4 HET EDO B 405 4 HET EDO B 406 4 HET EDO B 407 4 HET EDO B 408 4 HET EDO B 409 4 HET EDO B 410 4 HETNAM MSE SELENOMETHIONINE HETNAM ZN ZINC ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 8(C5 H11 N O2 SE) FORMUL 3 ZN 2(ZN 2+) FORMUL 4 EDO 16(C2 H6 O2) FORMUL 21 HOH *641(H2 O) HELIX 1 1 ASN A 40 SER A 55 1 16 HELIX 2 2 PRO A 95 ASN A 108 1 14 HELIX 3 3 ALA A 117 ALA A 121 5 5 HELIX 4 4 TRP A 125 ALA A 133 1 9 HELIX 5 5 ASN A 141 GLY A 145 5 5 HELIX 6 6 ASP A 219 ASN A 223 5 5 HELIX 7 7 ASN A 257 CYS A 262 1 6 HELIX 8 8 CYS A 262 GLY A 279 1 18 HELIX 9 9 ASN B 40 SER B 55 1 16 HELIX 10 10 PRO B 95 ASN B 108 1 14 HELIX 11 11 ALA B 117 ALA B 121 5 5 HELIX 12 12 TRP B 125 ALA B 133 1 9 HELIX 13 13 ASN B 141 GLY B 145 5 5 HELIX 14 14 ASP B 219 ASN B 223 5 5 HELIX 15 15 ASN B 257 CYS B 262 1 6 HELIX 16 16 CYS B 262 GLY B 279 1 18 SHEET 1 A 9 PHE A 58 ILE A 64 0 SHEET 2 A 9 ILE A 28 THR A 34 1 N LEU A 32 O ASP A 61 SHEET 3 A 9 LEU A 84 LEU A 87 1 O VAL A 86 N LEU A 31 SHEET 4 A 9 GLY A 111 TYR A 115 1 O VAL A 113 N LEU A 87 SHEET 5 A 9 ARG A 241 THR A 245 1 O PHE A 243 N VAL A 112 SHEET 6 A 9 GLU A 228 VAL A 235 -1 N PHE A 233 O HIS A 244 SHEET 7 A 9 ILE A 209 TYR A 217 -1 N TYR A 214 O LEU A 231 SHEET 8 A 9 HIS A 171 GLY A 177 -1 N ASN A 176 O THR A 215 SHEET 9 A 9 LYS A 191 ASP A 197 -1 O TRP A 192 N LEU A 175 SHEET 1 B 2 TYR A 147 LYS A 151 0 SHEET 2 B 2 LYS A 154 ASP A 158 -1 O LYS A 154 N LYS A 151 SHEET 1 C 2 SER A 166 HIS A 167 0 SHEET 2 C 2 TYR A 200 ASP A 201 -1 O ASP A 201 N SER A 166 SHEET 1 D 9 PHE B 58 ILE B 64 0 SHEET 2 D 9 ILE B 28 THR B 34 1 N LEU B 32 O ASP B 61 SHEET 3 D 9 LEU B 84 LEU B 87 1 O VAL B 86 N LEU B 31 SHEET 4 D 9 GLY B 111 TYR B 115 1 O VAL B 113 N LEU B 87 SHEET 5 D 9 ARG B 241 THR B 245 1 O PHE B 243 N VAL B 112 SHEET 6 D 9 GLU B 228 VAL B 235 -1 N PHE B 233 O HIS B 244 SHEET 7 D 9 ILE B 209 TYR B 217 -1 N ARG B 210 O THR B 234 SHEET 8 D 9 HIS B 171 GLY B 177 -1 N ASN B 176 O THR B 215 SHEET 9 D 9 LYS B 191 ASP B 197 -1 O TRP B 192 N LEU B 175 SHEET 1 E 2 TYR B 147 LYS B 151 0 SHEET 2 E 2 LYS B 154 ASP B 158 -1 O LYS B 154 N LYS B 151 SHEET 1 F 2 SER B 166 HIS B 167 0 SHEET 2 F 2 TYR B 200 ASP B 201 -1 O ASP B 201 N SER B 166 LINK C ASP A 71 N MSE A 72 1555 1555 1.33 LINK C MSE A 72 N SER A 73 1555 1555 1.35 LINK C ARG A 202 N MSE A 203 1555 1555 1.35 LINK C MSE A 203 N ARG A 204 1555 1555 1.34 LINK C THR A 245 N MSE A 246 1555 1555 1.34 LINK C MSE A 246 N LEU A 247 1555 1555 1.34 LINK C ALA A 259 N MSE A 260 1555 1555 1.36 LINK C MSE A 260 N GLN A 261 1555 1555 1.34 LINK C ASP B 71 N MSE B 72 1555 1555 1.34 LINK C MSE B 72 N SER B 73 1555 1555 1.36 LINK C ARG B 202 N MSE B 203 1555 1555 1.35 LINK C MSE B 203 N ARG B 204 1555 1555 1.36 LINK C THR B 245 N MSE B 246 1555 1555 1.34 LINK C MSE B 246 N LEU B 247 1555 1555 1.35 LINK C ALA B 259 N MSE B 260 1555 1555 1.35 LINK C MSE B 260 N GLN B 261 1555 1555 1.35 LINK NE2 HIS A 39 ZN ZN A 401 1555 1555 2.07 LINK NE2 HIS A 116 ZN ZN A 401 1555 1555 2.11 LINK OE1 GLU A 198 ZN ZN A 401 1555 1555 2.12 LINK ND1 HIS A 249 ZN ZN A 401 1555 1555 2.16 LINK ZN ZN A 401 O2 EDO A 403 1555 1555 2.57 LINK ZN ZN A 401 O HOH A 700 1555 1555 2.44 LINK NE2 HIS B 39 ZN ZN B 401 1555 1555 2.11 LINK NE2 HIS B 116 ZN ZN B 401 1555 1555 2.13 LINK OE1 GLU B 198 ZN ZN B 401 1555 1555 2.09 LINK ND1 HIS B 249 ZN ZN B 401 1555 1555 2.10 LINK ZN ZN B 401 O HOH B 556 1555 1555 2.37 SITE 1 AC1 6 HIS A 39 HIS A 116 GLU A 198 HIS A 249 SITE 2 AC1 6 EDO A 403 HOH A 700 SITE 1 AC2 9 GLU A 172 ARG A 193 THR A 293 THR A 294 SITE 2 AC2 9 CYS A 295 HOH A 619 HOH A 641 HOH A 756 SITE 3 AC2 9 HOH A 757 SITE 1 AC3 10 ASN A 38 HIS A 39 HIS A 116 ASN A 120 SITE 2 AC3 10 TRP A 137 HIS A 167 GLU A 198 TYR A 200 SITE 3 AC3 10 ZN A 401 HOH A 700 SITE 1 AC4 6 HIS A 249 GLY A 251 ASN A 257 ILE A 258 SITE 2 AC4 6 ALA A 259 HOH A 721 SITE 1 AC5 3 LEU A 77 ASP A 78 TYR A 82 SITE 1 AC6 4 GLY A 74 HOH A 591 HOH A 785 HOH A 788 SITE 1 AC7 3 LYS A 186 ARG A 271 GLN A 283 SITE 1 AC8 5 ASN A 38 HIS A 39 HIS A 249 HOH A 597 SITE 2 AC8 5 HOH A 700 SITE 1 AC9 6 HIS B 39 HIS B 116 GLU B 198 HIS B 249 SITE 2 AC9 6 EDO B 402 HOH B 556 SITE 1 BC1 9 ASN B 38 HIS B 39 ASN B 120 TRP B 137 SITE 2 BC1 9 HIS B 167 GLU B 198 TYR B 200 ZN B 401 SITE 3 BC1 9 HOH B 556 SITE 1 BC2 4 ASN B 38 ASN B 90 ASN B 120 GLU B 138 SITE 1 BC3 4 GLU B 96 ASN B 99 TRP B 125 HOH B 541 SITE 1 BC4 5 PRO B 183 LYS B 186 ARG B 271 VAL B 281 SITE 2 BC4 5 HOH B 664 SITE 1 BC5 9 GLU B 172 ARG B 193 THR B 293 THR B 294 SITE 2 BC5 9 CYS B 295 HOH B 580 HOH B 673 HOH B 679 SITE 3 BC5 9 HOH B 764 SITE 1 BC6 4 LEU B 77 ASP B 78 TYR B 82 HOH B 783 SITE 1 BC7 6 PRO B 189 LEU B 190 LYS B 191 GLU B 292 SITE 2 BC7 6 HOH B 652 HOH B 751 SITE 1 BC8 5 SER B 159 ALA B 161 ILE B 258 TYR B 297 SITE 2 BC8 5 LYS B 299 SITE 1 BC9 6 LYS A 191 ASN B 176 GLY B 177 LYS B 180 SITE 2 BC9 6 LEU B 190 LYS B 191 CRYST1 42.590 95.370 70.600 90.00 102.14 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023480 0.000000 0.005051 0.00000 SCALE2 0.000000 0.010485 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014488 0.00000