HEADER TRANSFERASE 15-MAR-12 4E69 TITLE CRYSTAL STRUCTURE OF A SUGAR KINASE (TARGET EFI-502132) FROM TITLE 2 OCEANICOLA GRANULOSUS, UNLIGANDED STRUCTURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: 2-DEHYDRO-3-DEOXYGLUCONOKINASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: OCEANICOLA GRANULOSUS; SOURCE 3 ORGANISM_TAXID: 314256; SOURCE 4 STRAIN: HTCC2516; SOURCE 5 GENE: OG2516_05533; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET KEYWDS PUTATIVE SUGAR KINASE, ENZYME FUNCTION INITIATIVE, EFI, STRUCTURAL KEYWDS 2 GENOMICS, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.W.VETTING,R.TORO,R.BHOSLE,N.F.AL OBAIDI,L.L.MORISCO,S.R.WASSERMAN, AUTHOR 2 S.SOJITRA,E.WASHINGTON,A.SCOTT GLENN,S.CHOWDHURY,B.EVANS,J.HAMMONDS, AUTHOR 3 B.HILLERICH,J.LOVE,R.D.SEIDEL,H.J.IMKER,J.A.GERLT,S.C.ALMO,ENZYME AUTHOR 4 FUNCTION INITIATIVE (EFI) REVDAT 2 13-SEP-23 4E69 1 REMARK SEQADV REVDAT 1 18-APR-12 4E69 0 JRNL AUTH M.W.VETTING,R.TORO,R.BHOSLE,N.F.AL OBAIDI,L.L.MORISCO, JRNL AUTH 2 S.R.WASSERMAN,S.SOJITRA,E.WASHINGTON,A.SCOTT GLENN, JRNL AUTH 3 S.CHOWDHURY,B.EVANS,J.HAMMONDS,B.HILLERICH,J.LOVE, JRNL AUTH 4 R.D.SEIDEL,H.J.IMKER,J.A.GERLT,S.C.ALMO, JRNL AUTH 5 ENZYME FUNCTION INITIATIVE (EFI) JRNL TITL CRYSTAL STRUCTURE OF A SUGAR KINASE (TARGET EFI-502132) FROM JRNL TITL 2 OCEANICOLA GRANULOSUS, UNLIGANDED STRUCTURE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.7.3_928 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.02 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 84483 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.197 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 4212 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.0282 - 4.9627 0.95 2640 141 0.1874 0.2054 REMARK 3 2 4.9627 - 3.9425 1.00 2709 147 0.1354 0.1653 REMARK 3 3 3.9425 - 3.4452 1.00 2695 145 0.1418 0.1583 REMARK 3 4 3.4452 - 3.1306 1.00 2725 125 0.1536 0.1705 REMARK 3 5 3.1306 - 2.9065 1.00 2654 142 0.1637 0.1852 REMARK 3 6 2.9065 - 2.7353 1.00 2704 147 0.1594 0.1800 REMARK 3 7 2.7353 - 2.5984 1.00 2672 163 0.1563 0.1875 REMARK 3 8 2.5984 - 2.4854 1.00 2728 114 0.1562 0.2157 REMARK 3 9 2.4854 - 2.3897 1.00 2654 134 0.1578 0.2006 REMARK 3 10 2.3897 - 2.3073 1.00 2664 168 0.1526 0.1984 REMARK 3 11 2.3073 - 2.2352 1.00 2668 145 0.1489 0.1789 REMARK 3 12 2.2352 - 2.1713 1.00 2675 147 0.1559 0.1965 REMARK 3 13 2.1713 - 2.1142 1.00 2662 142 0.1576 0.1845 REMARK 3 14 2.1142 - 2.0626 1.00 2686 139 0.1610 0.1658 REMARK 3 15 2.0626 - 2.0158 1.00 2700 116 0.1563 0.1976 REMARK 3 16 2.0158 - 1.9729 1.00 2686 134 0.1645 0.2058 REMARK 3 17 1.9729 - 1.9334 1.00 2647 146 0.1620 0.2047 REMARK 3 18 1.9334 - 1.8969 1.00 2665 142 0.1684 0.1929 REMARK 3 19 1.8969 - 1.8631 1.00 2669 140 0.1727 0.2089 REMARK 3 20 1.8631 - 1.8315 1.00 2617 162 0.1784 0.2167 REMARK 3 21 1.8315 - 1.8020 1.00 2697 139 0.1877 0.2318 REMARK 3 22 1.8020 - 1.7742 1.00 2627 132 0.2062 0.2523 REMARK 3 23 1.7742 - 1.7481 1.00 2729 124 0.2258 0.2703 REMARK 3 24 1.7481 - 1.7235 1.00 2668 139 0.2409 0.2646 REMARK 3 25 1.7235 - 1.7002 1.00 2657 141 0.2492 0.2779 REMARK 3 26 1.7002 - 1.6782 1.00 2683 135 0.2588 0.3187 REMARK 3 27 1.6782 - 1.6572 1.00 2625 140 0.2905 0.3328 REMARK 3 28 1.6572 - 1.6372 1.00 2712 144 0.3067 0.3215 REMARK 3 29 1.6372 - 1.6182 1.00 2644 137 0.3081 0.3483 REMARK 3 30 1.6182 - 1.6000 1.00 2709 142 0.3171 0.3405 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.86 REMARK 3 K_SOL : 0.36 REMARK 3 B_SOL : 45.89 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.240 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.51 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.42 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.06600 REMARK 3 B22 (A**2) : 2.94900 REMARK 3 B33 (A**2) : -6.01500 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.75300 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 4954 REMARK 3 ANGLE : 1.004 6755 REMARK 3 CHIRALITY : 0.072 743 REMARK 3 PLANARITY : 0.004 918 REMARK 3 DIHEDRAL : 12.880 1801 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ -13:108) REMARK 3 ORIGIN FOR THE GROUP (A): 8.8288 48.3300 47.3497 REMARK 3 T TENSOR REMARK 3 T11: 0.0713 T22: 0.0872 REMARK 3 T33: 0.1129 T12: -0.0168 REMARK 3 T13: 0.0049 T23: 0.0029 REMARK 3 L TENSOR REMARK 3 L11: 1.1234 L22: 0.7151 REMARK 3 L33: 1.9215 L12: -0.1939 REMARK 3 L13: 0.6838 L23: 0.1116 REMARK 3 S TENSOR REMARK 3 S11: 0.0580 S12: -0.1153 S13: -0.0625 REMARK 3 S21: 0.0027 S22: -0.0565 S23: 0.0375 REMARK 3 S31: 0.1456 S32: -0.1803 S33: 0.0104 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 109:233) REMARK 3 ORIGIN FOR THE GROUP (A): 24.8967 59.6810 47.0143 REMARK 3 T TENSOR REMARK 3 T11: 0.1214 T22: 0.0850 REMARK 3 T33: 0.1275 T12: -0.0013 REMARK 3 T13: 0.0077 T23: -0.0179 REMARK 3 L TENSOR REMARK 3 L11: 1.7032 L22: 1.2045 REMARK 3 L33: 0.9667 L12: -0.2280 REMARK 3 L13: 0.4979 L23: -0.6092 REMARK 3 S TENSOR REMARK 3 S11: 0.0220 S12: 0.0110 S13: 0.0582 REMARK 3 S21: 0.0081 S22: -0.0426 S23: -0.0459 REMARK 3 S31: 0.0159 S32: 0.0557 S33: 0.0235 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 234:296) REMARK 3 ORIGIN FOR THE GROUP (A): 28.1779 42.0815 48.9254 REMARK 3 T TENSOR REMARK 3 T11: 0.1383 T22: 0.1020 REMARK 3 T33: 0.1800 T12: 0.0223 REMARK 3 T13: -0.0118 T23: 0.0053 REMARK 3 L TENSOR REMARK 3 L11: 1.0810 L22: 0.9778 REMARK 3 L33: 1.6123 L12: 0.2298 REMARK 3 L13: 0.4988 L23: 0.3150 REMARK 3 S TENSOR REMARK 3 S11: 0.0457 S12: -0.0020 S13: -0.1982 REMARK 3 S21: 0.1236 S22: 0.0176 S23: -0.1718 REMARK 3 S31: 0.1739 S32: 0.0881 S33: -0.0578 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ -13:21) REMARK 3 ORIGIN FOR THE GROUP (A): -5.1358 46.0354 10.9454 REMARK 3 T TENSOR REMARK 3 T11: 0.2032 T22: 0.1830 REMARK 3 T33: 0.1736 T12: 0.0061 REMARK 3 T13: -0.0180 T23: 0.0043 REMARK 3 L TENSOR REMARK 3 L11: 0.1199 L22: 0.0335 REMARK 3 L33: 1.4354 L12: -0.0869 REMARK 3 L13: 0.3390 L23: -0.3377 REMARK 3 S TENSOR REMARK 3 S11: 0.0412 S12: 0.0603 S13: -0.0681 REMARK 3 S21: -0.0659 S22: 0.0426 S23: 0.0117 REMARK 3 S31: 0.2270 S32: -0.1168 S33: -0.0729 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 22:137) REMARK 3 ORIGIN FOR THE GROUP (A): -2.9905 50.3877 19.2855 REMARK 3 T TENSOR REMARK 3 T11: 0.1147 T22: 0.1208 REMARK 3 T33: 0.1417 T12: 0.0064 REMARK 3 T13: 0.0152 T23: 0.0041 REMARK 3 L TENSOR REMARK 3 L11: 1.0298 L22: 0.9349 REMARK 3 L33: 2.5471 L12: -0.3095 REMARK 3 L13: 0.7050 L23: -0.1587 REMARK 3 S TENSOR REMARK 3 S11: -0.0132 S12: 0.0790 S13: 0.0072 REMARK 3 S21: -0.0147 S22: -0.0024 S23: -0.0770 REMARK 3 S31: 0.0365 S32: 0.0728 S33: 0.0161 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 138:204) REMARK 3 ORIGIN FOR THE GROUP (A): -13.4529 64.0541 18.4305 REMARK 3 T TENSOR REMARK 3 T11: 0.1857 T22: 0.1343 REMARK 3 T33: 0.1633 T12: 0.0261 REMARK 3 T13: 0.0021 T23: 0.0125 REMARK 3 L TENSOR REMARK 3 L11: 2.1670 L22: 1.1383 REMARK 3 L33: 1.1517 L12: -0.5686 REMARK 3 L13: -0.4960 L23: 0.3361 REMARK 3 S TENSOR REMARK 3 S11: -0.0434 S12: -0.0081 S13: 0.2400 REMARK 3 S21: 0.0526 S22: 0.0001 S23: -0.0788 REMARK 3 S31: -0.2084 S32: -0.0769 S33: 0.0608 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESSEQ 205:297) REMARK 3 ORIGIN FOR THE GROUP (A): -24.7331 51.3706 17.3802 REMARK 3 T TENSOR REMARK 3 T11: 0.1435 T22: 0.2725 REMARK 3 T33: 0.1523 T12: -0.0238 REMARK 3 T13: 0.0229 T23: -0.0043 REMARK 3 L TENSOR REMARK 3 L11: 2.2756 L22: 1.6294 REMARK 3 L33: 1.7305 L12: -0.3721 REMARK 3 L13: 0.1051 L23: 0.8251 REMARK 3 S TENSOR REMARK 3 S11: 0.0579 S12: 0.0044 S13: -0.2256 REMARK 3 S21: 0.1328 S22: -0.1213 S23: 0.2498 REMARK 3 S31: 0.1137 S32: -0.4050 S33: 0.0425 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4E69 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-MAR-12. REMARK 100 THE DEPOSITION ID IS D_1000071221. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-FEB-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 84535 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 3.600 REMARK 200 R MERGE (I) : 0.07300 REMARK 200 R SYM (I) : 0.07300 REMARK 200 FOR THE DATA SET : 9.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.83700 REMARK 200 R SYM FOR SHELL (I) : 0.83700 REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 3LHX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.78 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN (10 MM HEPES PH 7.5, 150 MM REMARK 280 NACL, 10% GLYCEROL, 1 MM DTT; RESERVOIR (1 M LICL, 0.1 M REMARK 280 NACITRATE PH 4, 20% PEG 6000); CRYOPROTECTION (RESERVOIR, + 20% REMARK 280 ETHYELENE GLYCOL), VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 298K, PH 4.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 38.15300 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3420 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26000 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -70.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3480 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25940 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -78.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 37.48899 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 73.36431 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -22 REMARK 465 HIS A -21 REMARK 465 HIS A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 SER A -15 REMARK 465 SER A -14 REMARK 465 PRO A 297 REMARK 465 SER A 298 REMARK 465 LEU A 299 REMARK 465 ARG A 300 REMARK 465 PRO A 301 REMARK 465 HIS A 302 REMARK 465 ALA A 303 REMARK 465 ASP A 304 REMARK 465 ALA A 305 REMARK 465 MET B -22 REMARK 465 HIS B -21 REMARK 465 HIS B -20 REMARK 465 HIS B -19 REMARK 465 HIS B -18 REMARK 465 HIS B -17 REMARK 465 HIS B -16 REMARK 465 SER B -15 REMARK 465 SER B -14 REMARK 465 SER B 298 REMARK 465 LEU B 299 REMARK 465 ARG B 300 REMARK 465 PRO B 301 REMARK 465 HIS B 302 REMARK 465 ALA B 303 REMARK 465 ASP B 304 REMARK 465 ALA B 305 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG B 23 O HOH B 554 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A -6 -167.03 -117.74 REMARK 500 ALA A 16 -167.68 -104.21 REMARK 500 ALA A 27 -146.41 -152.07 REMARK 500 SER A 50 -169.80 -166.76 REMARK 500 ARG A 101 5.11 -151.46 REMARK 500 ASN A 163 66.36 32.82 REMARK 500 ASN A 224 59.01 -147.75 REMARK 500 ASP A 250 119.50 -163.02 REMARK 500 ASN B -6 -167.13 -121.86 REMARK 500 ALA B 16 -164.90 -107.61 REMARK 500 ALA B 27 -142.63 -152.80 REMARK 500 SER B 50 -167.50 -167.14 REMARK 500 ASN B 163 70.23 32.46 REMARK 500 ASN B 224 57.98 -146.67 REMARK 500 ASP B 250 118.10 -168.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 404 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EFI-502132 RELATED DB: TARGETTRACK DBREF 4E69 A 1 305 UNP Q2CIP5 Q2CIP5_9RHOB 1 305 DBREF 4E69 B 1 305 UNP Q2CIP5 Q2CIP5_9RHOB 1 305 SEQADV 4E69 MET A -22 UNP Q2CIP5 EXPRESSION TAG SEQADV 4E69 HIS A -21 UNP Q2CIP5 EXPRESSION TAG SEQADV 4E69 HIS A -20 UNP Q2CIP5 EXPRESSION TAG SEQADV 4E69 HIS A -19 UNP Q2CIP5 EXPRESSION TAG SEQADV 4E69 HIS A -18 UNP Q2CIP5 EXPRESSION TAG SEQADV 4E69 HIS A -17 UNP Q2CIP5 EXPRESSION TAG SEQADV 4E69 HIS A -16 UNP Q2CIP5 EXPRESSION TAG SEQADV 4E69 SER A -15 UNP Q2CIP5 EXPRESSION TAG SEQADV 4E69 SER A -14 UNP Q2CIP5 EXPRESSION TAG SEQADV 4E69 GLY A -13 UNP Q2CIP5 EXPRESSION TAG SEQADV 4E69 VAL A -12 UNP Q2CIP5 EXPRESSION TAG SEQADV 4E69 ASP A -11 UNP Q2CIP5 EXPRESSION TAG SEQADV 4E69 LEU A -10 UNP Q2CIP5 EXPRESSION TAG SEQADV 4E69 GLY A -9 UNP Q2CIP5 EXPRESSION TAG SEQADV 4E69 THR A -8 UNP Q2CIP5 EXPRESSION TAG SEQADV 4E69 GLU A -7 UNP Q2CIP5 EXPRESSION TAG SEQADV 4E69 ASN A -6 UNP Q2CIP5 EXPRESSION TAG SEQADV 4E69 LEU A -5 UNP Q2CIP5 EXPRESSION TAG SEQADV 4E69 TYR A -4 UNP Q2CIP5 EXPRESSION TAG SEQADV 4E69 PHE A -3 UNP Q2CIP5 EXPRESSION TAG SEQADV 4E69 GLN A -2 UNP Q2CIP5 EXPRESSION TAG SEQADV 4E69 SER A -1 UNP Q2CIP5 EXPRESSION TAG SEQADV 4E69 MET A 0 UNP Q2CIP5 EXPRESSION TAG SEQADV 4E69 MET B -22 UNP Q2CIP5 EXPRESSION TAG SEQADV 4E69 HIS B -21 UNP Q2CIP5 EXPRESSION TAG SEQADV 4E69 HIS B -20 UNP Q2CIP5 EXPRESSION TAG SEQADV 4E69 HIS B -19 UNP Q2CIP5 EXPRESSION TAG SEQADV 4E69 HIS B -18 UNP Q2CIP5 EXPRESSION TAG SEQADV 4E69 HIS B -17 UNP Q2CIP5 EXPRESSION TAG SEQADV 4E69 HIS B -16 UNP Q2CIP5 EXPRESSION TAG SEQADV 4E69 SER B -15 UNP Q2CIP5 EXPRESSION TAG SEQADV 4E69 SER B -14 UNP Q2CIP5 EXPRESSION TAG SEQADV 4E69 GLY B -13 UNP Q2CIP5 EXPRESSION TAG SEQADV 4E69 VAL B -12 UNP Q2CIP5 EXPRESSION TAG SEQADV 4E69 ASP B -11 UNP Q2CIP5 EXPRESSION TAG SEQADV 4E69 LEU B -10 UNP Q2CIP5 EXPRESSION TAG SEQADV 4E69 GLY B -9 UNP Q2CIP5 EXPRESSION TAG SEQADV 4E69 THR B -8 UNP Q2CIP5 EXPRESSION TAG SEQADV 4E69 GLU B -7 UNP Q2CIP5 EXPRESSION TAG SEQADV 4E69 ASN B -6 UNP Q2CIP5 EXPRESSION TAG SEQADV 4E69 LEU B -5 UNP Q2CIP5 EXPRESSION TAG SEQADV 4E69 TYR B -4 UNP Q2CIP5 EXPRESSION TAG SEQADV 4E69 PHE B -3 UNP Q2CIP5 EXPRESSION TAG SEQADV 4E69 GLN B -2 UNP Q2CIP5 EXPRESSION TAG SEQADV 4E69 SER B -1 UNP Q2CIP5 EXPRESSION TAG SEQADV 4E69 MET B 0 UNP Q2CIP5 EXPRESSION TAG SEQRES 1 A 328 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 328 GLY THR GLU ASN LEU TYR PHE GLN SER MET MET HIS ILE SEQRES 3 A 328 LEU SER ILE GLY GLU CYS MET ALA GLU LEU ALA PRO ALA SEQRES 4 A 328 ASP LEU PRO GLY THR TYR ARG LEU GLY PHE ALA GLY ASP SEQRES 5 A 328 THR PHE ASN THR ALA TRP TYR LEU ALA ARG LEU ARG PRO SEQRES 6 A 328 GLU SER ARG ILE SER TYR PHE SER ALA ILE GLY ASP ASP SEQRES 7 A 328 ALA LEU SER GLN GLN MET ARG ALA ALA MET SER ALA ALA SEQRES 8 A 328 GLY ILE ASP GLY GLY GLY LEU ARG VAL ILE PRO GLY ARG SEQRES 9 A 328 THR VAL GLY LEU TYR LEU ILE THR LEU GLU GLN GLY GLU SEQRES 10 A 328 ARG SER PHE ALA TYR TRP ARG GLY GLN SER ALA ALA ARG SEQRES 11 A 328 GLU LEU ALA GLY ASP ALA ASP ALA LEU ALA ALA ALA MET SEQRES 12 A 328 ALA ARG ALA ASP VAL VAL TYR PHE SER GLY ILE THR LEU SEQRES 13 A 328 ALA ILE LEU ASP GLN CYS GLY ARG ALA THR LEU LEU ARG SEQRES 14 A 328 ALA LEU ALA GLN ALA ARG ALA THR GLY ARG THR ILE ALA SEQRES 15 A 328 PHE ASP PRO ASN LEU ARG PRO ARG LEU TRP ALA GLY THR SEQRES 16 A 328 GLY GLU MET THR GLU THR ILE MET GLN GLY ALA ALA VAL SEQRES 17 A 328 SER ASP ILE ALA LEU PRO SER PHE GLU ASP GLU ALA ALA SEQRES 18 A 328 TRP PHE GLY ASP ALA GLY PRO ASP ALA THR ALA ASP ARG SEQRES 19 A 328 TYR ALA ARG ALA GLY VAL ARG SER VAL VAL VAL LYS ASN SEQRES 20 A 328 GLY PRO HIS ALA VAL HIS PHE LEU GLN ASP GLY ARG ARG SEQRES 21 A 328 GLY ARG VAL PRO VAL PRO PRO VAL ALA GLN VAL VAL ASP SEQRES 22 A 328 THR THR ALA ALA GLY ASP SER PHE ASN ALA GLY LEU LEU SEQRES 23 A 328 ASP SER VAL LEU ALA GLY GLN PRO LEU GLU THR ALA ILE SEQRES 24 A 328 ALA ALA ALA ALA ALA LEU ALA GLY GLN VAL VAL GLN GLY SEQRES 25 A 328 LYS GLY ALA LEU VAL GLU VAL PRO SER LEU ARG PRO HIS SEQRES 26 A 328 ALA ASP ALA SEQRES 1 B 328 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 B 328 GLY THR GLU ASN LEU TYR PHE GLN SER MET MET HIS ILE SEQRES 3 B 328 LEU SER ILE GLY GLU CYS MET ALA GLU LEU ALA PRO ALA SEQRES 4 B 328 ASP LEU PRO GLY THR TYR ARG LEU GLY PHE ALA GLY ASP SEQRES 5 B 328 THR PHE ASN THR ALA TRP TYR LEU ALA ARG LEU ARG PRO SEQRES 6 B 328 GLU SER ARG ILE SER TYR PHE SER ALA ILE GLY ASP ASP SEQRES 7 B 328 ALA LEU SER GLN GLN MET ARG ALA ALA MET SER ALA ALA SEQRES 8 B 328 GLY ILE ASP GLY GLY GLY LEU ARG VAL ILE PRO GLY ARG SEQRES 9 B 328 THR VAL GLY LEU TYR LEU ILE THR LEU GLU GLN GLY GLU SEQRES 10 B 328 ARG SER PHE ALA TYR TRP ARG GLY GLN SER ALA ALA ARG SEQRES 11 B 328 GLU LEU ALA GLY ASP ALA ASP ALA LEU ALA ALA ALA MET SEQRES 12 B 328 ALA ARG ALA ASP VAL VAL TYR PHE SER GLY ILE THR LEU SEQRES 13 B 328 ALA ILE LEU ASP GLN CYS GLY ARG ALA THR LEU LEU ARG SEQRES 14 B 328 ALA LEU ALA GLN ALA ARG ALA THR GLY ARG THR ILE ALA SEQRES 15 B 328 PHE ASP PRO ASN LEU ARG PRO ARG LEU TRP ALA GLY THR SEQRES 16 B 328 GLY GLU MET THR GLU THR ILE MET GLN GLY ALA ALA VAL SEQRES 17 B 328 SER ASP ILE ALA LEU PRO SER PHE GLU ASP GLU ALA ALA SEQRES 18 B 328 TRP PHE GLY ASP ALA GLY PRO ASP ALA THR ALA ASP ARG SEQRES 19 B 328 TYR ALA ARG ALA GLY VAL ARG SER VAL VAL VAL LYS ASN SEQRES 20 B 328 GLY PRO HIS ALA VAL HIS PHE LEU GLN ASP GLY ARG ARG SEQRES 21 B 328 GLY ARG VAL PRO VAL PRO PRO VAL ALA GLN VAL VAL ASP SEQRES 22 B 328 THR THR ALA ALA GLY ASP SER PHE ASN ALA GLY LEU LEU SEQRES 23 B 328 ASP SER VAL LEU ALA GLY GLN PRO LEU GLU THR ALA ILE SEQRES 24 B 328 ALA ALA ALA ALA ALA LEU ALA GLY GLN VAL VAL GLN GLY SEQRES 25 B 328 LYS GLY ALA LEU VAL GLU VAL PRO SER LEU ARG PRO HIS SEQRES 26 B 328 ALA ASP ALA HET CL A 401 1 HET CL A 402 1 HET CL A 403 1 HET CL A 404 1 HET EDO A 405 4 HET EDO A 406 4 HET GOL A 407 6 HET CL B 401 1 HET CL B 402 1 HET EDO B 403 4 HET GOL B 404 6 HETNAM CL CHLORIDE ION HETNAM EDO 1,2-ETHANEDIOL HETNAM GOL GLYCEROL HETSYN EDO ETHYLENE GLYCOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 CL 6(CL 1-) FORMUL 7 EDO 3(C2 H6 O2) FORMUL 9 GOL 2(C3 H8 O3) FORMUL 14 HOH *672(H2 O) HELIX 1 1 GLY A 28 ARG A 41 1 14 HELIX 2 2 ASP A 55 ALA A 68 1 14 HELIX 3 3 SER A 104 LEU A 109 5 6 HELIX 4 4 ASP A 112 ALA A 121 1 10 HELIX 5 5 GLY A 130 ILE A 135 1 6 HELIX 6 6 ASP A 137 THR A 154 1 18 HELIX 7 7 ARG A 165 TRP A 169 5 5 HELIX 8 8 GLY A 171 ALA A 184 1 14 HELIX 9 9 SER A 192 GLY A 201 1 10 HELIX 10 10 GLY A 204 ARG A 214 1 11 HELIX 11 11 ALA A 253 ALA A 268 1 16 HELIX 12 12 PRO A 271 GLN A 288 1 18 HELIX 13 13 GLY B 28 ARG B 41 1 14 HELIX 14 14 ASP B 55 ALA B 68 1 14 HELIX 15 15 SER B 104 LEU B 109 5 6 HELIX 16 16 ASP B 112 ALA B 121 1 10 HELIX 17 17 GLY B 130 ILE B 135 1 6 HELIX 18 18 ASP B 137 THR B 154 1 18 HELIX 19 19 ARG B 165 TRP B 169 5 5 HELIX 20 20 GLY B 171 ALA B 184 1 14 HELIX 21 21 SER B 192 GLY B 201 1 10 HELIX 22 22 GLY B 204 ALA B 215 1 12 HELIX 23 23 ALA B 253 ALA B 268 1 16 HELIX 24 24 PRO B 271 GLN B 288 1 18 SHEET 1 A 9 ILE A 70 ASP A 71 0 SHEET 2 A 9 ARG A 45 PHE A 49 1 N ILE A 46 O ASP A 71 SHEET 3 A 9 HIS A 2 ILE A 6 1 N ILE A 3 O SER A 47 SHEET 4 A 9 VAL A 125 SER A 129 1 O TYR A 127 N LEU A 4 SHEET 5 A 9 THR A 157 ASP A 161 1 O ALA A 159 N VAL A 126 SHEET 6 A 9 ILE A 188 ALA A 189 1 O ILE A 188 N PHE A 160 SHEET 7 A 9 SER A 219 VAL A 222 1 O VAL A 221 N ALA A 189 SHEET 8 A 9 VAL A 229 GLN A 233 -1 O HIS A 230 N VAL A 222 SHEET 9 A 9 ARG A 236 VAL A 240 -1 O VAL A 240 N VAL A 229 SHEET 1 B 8 GLU A 94 TRP A 100 0 SHEET 2 B 8 GLY A 84 GLU A 91 -1 N LEU A 87 O ALA A 98 SHEET 3 B 8 MET A 10 PRO A 15 1 N LEU A 13 O ILE A 88 SHEET 4 B 8 THR A 21 ALA A 27 -1 O ARG A 23 N ALA A 14 SHEET 5 B 8 THR B 21 ALA B 27 -1 O TYR B 22 N TYR A 22 SHEET 6 B 8 MET B 10 PRO B 15 -1 N ALA B 14 O ARG B 23 SHEET 7 B 8 GLY B 84 GLU B 91 1 O ILE B 88 N LEU B 13 SHEET 8 B 8 GLU B 94 TRP B 100 -1 O SER B 96 N THR B 89 SHEET 1 C 2 ALA A 51 ILE A 52 0 SHEET 2 C 2 ARG A 76 VAL A 77 1 O ARG A 76 N ILE A 52 SHEET 1 D 9 ILE B 70 ASP B 71 0 SHEET 2 D 9 ARG B 45 PHE B 49 1 N ILE B 46 O ASP B 71 SHEET 3 D 9 HIS B 2 ILE B 6 1 N ILE B 3 O SER B 47 SHEET 4 D 9 VAL B 125 SER B 129 1 O TYR B 127 N LEU B 4 SHEET 5 D 9 THR B 157 ASP B 161 1 O ALA B 159 N VAL B 126 SHEET 6 D 9 ILE B 188 ALA B 189 1 O ILE B 188 N PHE B 160 SHEET 7 D 9 SER B 219 VAL B 222 1 O VAL B 221 N ALA B 189 SHEET 8 D 9 VAL B 229 GLN B 233 -1 O HIS B 230 N VAL B 222 SHEET 9 D 9 ARG B 236 VAL B 240 -1 O VAL B 240 N VAL B 229 SHEET 1 E 2 ALA B 51 ILE B 52 0 SHEET 2 E 2 ARG B 76 VAL B 77 1 O ARG B 76 N ILE B 52 SITE 1 AC1 4 GLN A 233 LEU A 272 HOH A 656 ASN B -6 SITE 1 AC2 4 ARG A 165 PRO A 166 ARG A 167 GOL A 407 SITE 1 AC3 3 ASN A -6 GLN B 233 LEU B 272 SITE 1 AC4 4 ARG A 141 ALA A 170 GLU A 174 HOH A 547 SITE 1 AC5 6 PRO A 166 GLY A 171 THR A 172 HOH A 704 SITE 2 AC5 6 HOH A 804 HOH B 614 SITE 1 AC6 6 THR A 172 TRP A 199 HOH A 562 HOH A 838 SITE 2 AC6 6 ALA B 197 ASP B 202 SITE 1 AC7 7 TYR A 86 PHE A 97 TYR A 99 ARG A 101 SITE 2 AC7 7 ARG A 165 ARG A 167 CL A 402 SITE 1 AC8 3 ASP B 29 ARG B 165 HOH B 608 SITE 1 AC9 3 ARG B 165 PRO B 166 ARG B 167 SITE 1 BC1 3 GLY B 225 PHE B 258 HOH B 630 SITE 1 BC2 8 GLY A 201 ASP A 202 HOH A 664 LEU B 164 SITE 2 BC2 8 GLU B 194 ASP B 195 TRP B 199 HOH B 748 CRYST1 58.249 76.306 76.245 90.00 105.80 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017168 0.000000 0.004858 0.00000 SCALE2 0.000000 0.013105 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013631 0.00000