data_4E6R # _entry.id 4E6R # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4E6R pdb_00004e6r 10.2210/pdb4e6r/pdb RCSB RCSB071239 ? ? WWPDB D_1000071239 ? ? # _pdbx_database_related.db_name TargetTrack _pdbx_database_related.db_id JCSG-422527 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 4E6R _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2012-03-15 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Joint Center for Structural Genomics (JCSG)' 1 'Partnership for T-Cell Biology (TCELL)' 2 # _citation.id primary _citation.title 'Crystal structure of a Cytoplasmic protein NCK2 (NCK2) from Homo sapiens at 2.20 A resolution' _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Joint Center for Structural Genomics (JCSG)' 1 ? primary 'Partnership for T-Cell Biology (TCELL)' 2 ? # _cell.entry_id 4E6R _cell.length_a 108.398 _cell.length_b 108.398 _cell.length_c 68.199 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 120.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 24 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4E6R _symmetry.Int_Tables_number 179 _symmetry.space_group_name_H-M 'P 65 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Cytoplasmic protein NCK2' 6779.484 2 ? ? 'SH3 2 domain residues 114-170' ? 2 non-polymer syn 'ZINC ION' 65.409 5 ? ? ? ? 3 non-polymer syn IMIDAZOLE 69.085 2 ? ? ? ? 4 non-polymer syn 'UNKNOWN LIGAND' ? 2 ? ? ? ? 5 water nat water 18.015 33 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Growth factor receptor-bound protein 4, NCK adaptor protein 2, Nck-2, SH2/SH3 adaptor protein NCK-beta' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(DMG)IPAFV(MLY)FAYVAEREDELSLV(MLY)GSRVTV(MSE)E(MLY)CSDGWWRGSYNGQIGWFPSNYVLEEVD' _entity_poly.pdbx_seq_one_letter_code_can XIPAFVKFAYVAEREDELSLVKGSRVTVMEKCSDGWWRGSYNGQIGWFPSNYVLEEVD _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier JCSG-422527 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DMG n 1 2 ILE n 1 3 PRO n 1 4 ALA n 1 5 PHE n 1 6 VAL n 1 7 MLY n 1 8 PHE n 1 9 ALA n 1 10 TYR n 1 11 VAL n 1 12 ALA n 1 13 GLU n 1 14 ARG n 1 15 GLU n 1 16 ASP n 1 17 GLU n 1 18 LEU n 1 19 SER n 1 20 LEU n 1 21 VAL n 1 22 MLY n 1 23 GLY n 1 24 SER n 1 25 ARG n 1 26 VAL n 1 27 THR n 1 28 VAL n 1 29 MSE n 1 30 GLU n 1 31 MLY n 1 32 CYS n 1 33 SER n 1 34 ASP n 1 35 GLY n 1 36 TRP n 1 37 TRP n 1 38 ARG n 1 39 GLY n 1 40 SER n 1 41 TYR n 1 42 ASN n 1 43 GLY n 1 44 GLN n 1 45 ILE n 1 46 GLY n 1 47 TRP n 1 48 PHE n 1 49 PRO n 1 50 SER n 1 51 ASN n 1 52 TYR n 1 53 VAL n 1 54 LEU n 1 55 GLU n 1 56 GLU n 1 57 VAL n 1 58 ASP n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'BC007195, GRB4, NCK2' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia Coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain PB1 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name SpeedET _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code NCK2_HUMAN _struct_ref.pdbx_db_accession O43639 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code IPAFVKFAYVAEREDELSLVKGSRVTVMEKCSDGWWRGSYNGQIGWFPSNYVLEEVD _struct_ref.pdbx_align_begin 114 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4E6R A 2 ? 58 ? O43639 114 ? 170 ? 114 170 2 1 4E6R B 2 ? 58 ? O43639 114 ? 170 ? 114 170 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4E6R DMG A 1 ? UNP O43639 ? ? 'expression tag' 0 1 2 4E6R DMG B 1 ? UNP O43639 ? ? 'expression tag' 0 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DMG non-polymer . N,N-DIMETHYLGLYCINE DIMETHYLGLYCINE 'C4 H9 N O2' 103.120 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 IMD non-polymer . IMIDAZOLE ? 'C3 H5 N2 1' 69.085 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 MLY 'L-peptide linking' n N-DIMETHYL-LYSINE ? 'C8 H18 N2 O2' 174.241 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 UNL non-polymer . 'UNKNOWN LIGAND' ? ? ? VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 4E6R # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 4.27 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 71.16 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 8.0 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.pdbx_details ;40.00% polyethylene glycol 300, 0.20M zinc acetate, 0.1M Imidazole pH 8.0, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K ; _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'MARMOSAIC 325 mm CCD' _diffrn_detector.details 'double crystal monochromator' _diffrn_detector.pdbx_collection_date 2012-01-12 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'double crystal' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.91837 1.0 2 0.97949 1.0 3 0.97929 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.pdbx_synchrotron_beamline BL9-2 _diffrn_source.type 'SSRL BEAMLINE BL9-2' _diffrn_source.pdbx_wavelength_list 0.91837,0.97949,0.97929 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site SSRL # _reflns.entry_id 4E6R _reflns.d_resolution_high 2.20 _reflns.d_resolution_low 28.862 _reflns.number_all 12480 _reflns.number_obs 12480 _reflns.pdbx_netI_over_sigmaI 11.400 _reflns.pdbx_Rsym_value 0.200 _reflns.pdbx_redundancy 14.000 _reflns.percent_possible_obs 100.000 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.pdbx_Rmerge_I_obs ? _reflns.B_iso_Wilson_estimate 40.198 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 2.200 2.260 ? 12870 ? 0.021 0.3 2.069 ? 14.400 ? 896 100.000 1 1 2.260 2.320 ? 12481 ? 0.021 0.4 1.717 ? 14.200 ? 876 100.000 2 1 2.320 2.390 ? 12159 ? 0.021 0.4 1.822 ? 14.300 ? 850 100.000 3 1 2.390 2.460 ? 11947 ? 0.021 0.5 1.311 ? 14.400 ? 832 100.000 4 1 2.460 2.540 ? 11353 ? 0.021 0.6 1.082 ? 14.200 ? 799 100.000 5 1 2.540 2.630 ? 11298 ? 0.021 0.8 0.887 ? 14.300 ? 791 100.000 6 1 2.630 2.730 ? 10896 ? 0.021 1.0 0.688 ? 14.300 ? 764 100.000 7 1 2.730 2.840 ? 10378 ? 0.021 1.3 0.532 ? 14.300 ? 726 100.000 8 1 2.840 2.970 ? 9835 ? 0.021 1.9 0.373 ? 14.200 ? 693 100.000 9 1 2.970 3.110 ? 9673 ? 0.021 2.7 0.267 ? 14.200 ? 681 100.000 10 1 3.110 3.280 ? 9092 ? 0.021 4.0 0.181 ? 14.200 ? 642 100.000 11 1 3.280 3.480 ? 8587 ? 0.021 5.2 0.137 ? 14.000 ? 612 100.000 12 1 3.480 3.720 ? 7999 ? 0.021 6.3 0.112 ? 14.000 ? 570 100.000 13 1 3.720 4.020 ? 7627 ? 0.021 7.0 0.097 ? 13.800 ? 552 100.000 14 1 4.020 4.400 ? 6879 ? 0.021 8.0 0.083 ? 13.800 ? 497 100.000 15 1 4.400 4.920 ? 6289 ? 0.021 8.5 0.075 ? 13.600 ? 464 100.000 16 1 4.920 5.680 ? 5546 ? 0.021 8.7 0.077 ? 13.500 ? 412 100.000 17 1 5.680 6.960 ? 4644 ? 0.021 9.0 0.075 ? 13.000 ? 357 100.000 18 1 6.960 9.840 ? 3648 ? 0.021 9.4 0.070 ? 12.500 ? 293 100.000 19 1 9.840 28.862 ? 1865 ? 0.021 10.8 0.060 ? 10.800 ? 173 96.200 20 1 # _refine.entry_id 4E6R _refine.ls_d_res_high 2.2000 _refine.ls_d_res_low 28.862 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.7800 _refine.ls_number_reflns_obs 12456 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 2. ATOM RECORD CONTAINS SUM OF TLS AND RESIDUAL B FACTORS. 3. ANISOU RECORD CONTAINS SUM OF TLS AND RESIDUAL U FACTORS. 4. WATERS WERE EXCLUDED FROM AUTOMATIC TLS ASSIGNMENT. 5. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 6. X-RAY FLUORESCENCE EXCITATION AND WAVELENGTH SCANS, ANOMALOUS DIFFERENCE FOURIERS AND ITS PRESENCE IN CRYSTALLIZATION SOLUTION SUPPORT THE MODELING OF ZINC (ZN) IONS. 7. LYSINE RESIDUES WERE METHYLATED PRIOR TO CRYSTALLIZATION AND ARE MODELED AS DIMETHYL-LYSINE (MLY). THE N-TERMINAL GLYCINE RESIDUES WERE ALSO METHYLATED IN THIS PROCEDURE AND ARE MODELED AS N,N-DIMETHYLGLYCINE (DMG). 8. IMIDAZOLE (IMD) FROM THE CRYSTALLIZATION CONDITION HAS BEEN MODELED. 9. AN UNKNOWN LIGAND (UNL) HAS BEEN MODELED IN EACH CHAIN. ; _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2024 _refine.ls_R_factor_R_work 0.2012 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.2269 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 4.8000 _refine.ls_number_reflns_R_free 599 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 58.2369 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] 2.5800 _refine.aniso_B[2][2] 2.5800 _refine.aniso_B[3][3] -3.8700 _refine.aniso_B[1][2] 1.2900 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9500 _refine.correlation_coeff_Fo_to_Fc_free 0.9400 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R 0.1650 _refine.pdbx_overall_ESU_R_Free 0.1500 _refine.overall_SU_ML 0.1250 _refine.overall_SU_B 9.6120 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.pdbx_solvent_vdw_probe_radii 1.2000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 152.080 _refine.B_iso_min 26.180 _refine.pdbx_overall_phase_error ? _refine.occupancy_max 1.000 _refine.occupancy_min 0.400 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 952 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 33 _refine_hist.number_atoms_solvent 33 _refine_hist.number_atoms_total 1018 _refine_hist.d_res_high 2.2000 _refine_hist.d_res_low 28.862 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 1007 0.015 0.020 ? ? 'X-RAY DIFFRACTION' r_bond_other_d 686 0.001 0.020 ? ? 'X-RAY DIFFRACTION' r_angle_refined_deg 1367 1.769 1.977 ? ? 'X-RAY DIFFRACTION' r_angle_other_deg 1647 3.916 3.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 120 6.176 5.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 49 33.590 23.673 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 131 13.602 15.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 6 21.204 15.000 ? ? 'X-RAY DIFFRACTION' r_chiral_restr 141 0.091 0.200 ? ? 'X-RAY DIFFRACTION' r_gen_planes_refined 1124 0.006 0.020 ? ? 'X-RAY DIFFRACTION' r_gen_planes_other 242 0.001 0.020 ? ? 'X-RAY DIFFRACTION' # loop_ _refine_ls_restr_ncs.pdbx_refine_id _refine_ls_restr_ncs.pdbx_ens_id _refine_ls_restr_ncs.dom_id _refine_ls_restr_ncs.pdbx_type _refine_ls_restr_ncs.pdbx_auth_asym_id _refine_ls_restr_ncs.pdbx_number _refine_ls_restr_ncs.rms_dev_position _refine_ls_restr_ncs.weight_position _refine_ls_restr_ncs.pdbx_ordinal _refine_ls_restr_ncs.ncs_model_details _refine_ls_restr_ncs.rms_dev_B_iso _refine_ls_restr_ncs.weight_B_iso 'X-RAY DIFFRACTION' 1 1 'LOOSE POSITIONAL' A 797 0.550 5.000 1 ? ? ? 'X-RAY DIFFRACTION' 1 1 'LOOSE THERMAL' A 797 5.790 10.000 2 ? ? ? 'X-RAY DIFFRACTION' 2 1 'LOOSE POSITIONAL' A 9 0.400 5.000 3 ? ? ? 'X-RAY DIFFRACTION' 2 1 'LOOSE THERMAL' A 9 4.700 10.000 4 ? ? ? # _refine_ls_shell.d_res_high 2.2000 _refine_ls_shell.d_res_low 2.2570 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 100.0000 _refine_ls_shell.number_reflns_R_work 746 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.2850 _refine_ls_shell.R_factor_R_free 0.2820 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 40 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 786 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _struct_ncs_dom.pdbx_ens_id _struct_ncs_dom.id _struct_ncs_dom.details 1 1 A 1 2 B 2 1 A 2 2 B # loop_ _struct_ncs_dom_lim.pdbx_ens_id _struct_ncs_dom_lim.dom_id _struct_ncs_dom_lim.pdbx_component_id _struct_ncs_dom_lim.pdbx_refine_code _struct_ncs_dom_lim.beg_auth_asym_id _struct_ncs_dom_lim.beg_auth_seq_id _struct_ncs_dom_lim.end_auth_asym_id _struct_ncs_dom_lim.end_auth_seq_id _struct_ncs_dom_lim.selection_details _struct_ncs_dom_lim.beg_label_asym_id _struct_ncs_dom_lim.beg_label_comp_id _struct_ncs_dom_lim.beg_label_seq_id _struct_ncs_dom_lim.beg_label_alt_id _struct_ncs_dom_lim.end_label_asym_id _struct_ncs_dom_lim.end_label_comp_id _struct_ncs_dom_lim.end_label_seq_id _struct_ncs_dom_lim.end_label_alt_id 1 1 1 6 A 0 A 170 ? . . . . . . . . 1 2 1 6 B 0 B 170 ? . . . . . . . . 2 1 1 6 B 201 B 500 ? . . . . . . . . 2 2 1 6 A 206 A 500 ? . . . . . . . . # loop_ _struct_ncs_ens.id _struct_ncs_ens.details 1 ? 2 ? # _struct.entry_id 4E6R _struct.title 'Crystal structure of a Cytoplasmic protein NCK2 (NCK2) from Homo sapiens at 2.20 A resolution' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.text ;SH3 domain, protein binding, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-BIOLOGY, SUGAR BINDING PROTEIN, Partnership for T-Cell Biology, TCELL ; _struct_keywords.pdbx_keywords 'SUGAR BINDING PROTEIN' _struct_keywords.entry_id 4E6R # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 3 ? G N N 2 ? H N N 4 ? I N N 3 ? J N N 4 ? K N N 2 ? L N N 5 ? M N N 5 ? # _struct_biol.id 1 _struct_biol.details 'CRYSTAL PACKING ANALYSIS SUGGESTS THE ASSIGNMENT OF A TETRAMER AS THE SIGNIFICANT OLIGOMERIZATION STATE.' # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 32 SG A ? ? 1_555 B CYS 32 SG A ? A CYS 144 B CYS 144 10_665 ? ? ? ? ? ? ? 2.022 ? ? covale1 covale both ? A VAL 6 C ? ? ? 1_555 A MLY 7 N ? ? A VAL 118 A MLY 119 1_555 ? ? ? ? ? ? ? 1.337 ? ? covale2 covale both ? A MLY 7 C ? ? ? 1_555 A PHE 8 N ? ? A MLY 119 A PHE 120 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale3 covale both ? A VAL 21 C ? ? ? 1_555 A MLY 22 N ? ? A VAL 133 A MLY 134 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale4 covale both ? A MLY 22 C ? ? ? 1_555 A GLY 23 N ? ? A MLY 134 A GLY 135 1_555 ? ? ? ? ? ? ? 1.340 ? ? covale5 covale both ? A VAL 28 C ? ? ? 1_555 A MSE 29 N ? ? A VAL 140 A MSE 141 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale6 covale both ? A MSE 29 C ? ? ? 1_555 A GLU 30 N ? ? A MSE 141 A GLU 142 1_555 ? ? ? ? ? ? ? 1.332 ? ? covale7 covale both ? A GLU 30 C ? ? ? 1_555 A MLY 31 N ? ? A GLU 142 A MLY 143 1_555 ? ? ? ? ? ? ? 1.338 ? ? covale8 covale both ? A MLY 31 C ? ? ? 1_555 A CYS 32 N ? ? A MLY 143 A CYS 144 1_555 ? ? ? ? ? ? ? 1.339 ? ? covale9 covale both ? B VAL 6 C ? ? ? 1_555 B MLY 7 N ? ? B VAL 118 B MLY 119 1_555 ? ? ? ? ? ? ? 1.340 ? ? covale10 covale both ? B MLY 7 C ? ? ? 1_555 B PHE 8 N ? ? B MLY 119 B PHE 120 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale11 covale both ? B VAL 21 C ? ? ? 1_555 B MLY 22 N ? ? B VAL 133 B MLY 134 1_555 ? ? ? ? ? ? ? 1.336 ? ? covale12 covale both ? B MLY 22 C ? ? ? 1_555 B GLY 23 N ? ? B MLY 134 B GLY 135 1_555 ? ? ? ? ? ? ? 1.331 ? ? covale13 covale both ? B VAL 28 C ? ? ? 1_555 B MSE 29 N ? ? B VAL 140 B MSE 141 1_555 ? ? ? ? ? ? ? 1.320 ? ? covale14 covale both ? B MSE 29 C ? ? ? 1_555 B GLU 30 N ? ? B MSE 141 B GLU 142 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale15 covale both ? B GLU 30 C ? ? ? 1_555 B MLY 31 N ? ? B GLU 142 B MLY 143 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale16 covale both ? B MLY 31 C ? ? ? 1_555 B CYS 32 N ? ? B MLY 143 B CYS 144 1_555 ? ? ? ? ? ? ? 1.335 ? ? metalc1 metalc ? ? A GLU 13 OE1 ? ? ? 1_555 D ZN . ZN ? ? A GLU 125 A ZN 202 1_555 ? ? ? ? ? ? ? 2.505 ? ? metalc2 metalc ? ? A GLU 15 OE1 ? ? ? 1_555 G ZN . ZN ? ? A GLU 127 A ZN 205 1_555 ? ? ? ? ? ? ? 2.445 ? ? metalc3 metalc ? ? A GLU 30 OE2 ? ? ? 1_555 C ZN . ZN ? ? A GLU 142 A ZN 201 1_555 ? ? ? ? ? ? ? 1.826 ? ? metalc4 metalc ? ? A GLU 30 OE1 ? ? ? 1_555 C ZN . ZN ? ? A GLU 142 A ZN 201 1_555 ? ? ? ? ? ? ? 2.647 ? ? metalc5 metalc ? ? A ASP 58 OD1 ? ? ? 1_555 E ZN . ZN ? ? A ASP 170 A ZN 203 1_555 ? ? ? ? ? ? ? 2.445 ? ? metalc6 metalc ? ? C ZN . ZN ? ? ? 1_555 F IMD . N3 ? ? A ZN 201 A IMD 204 1_555 ? ? ? ? ? ? ? 2.213 ? ? metalc7 metalc ? ? C ZN . ZN ? ? ? 1_555 B GLU 15 OE1 ? ? A ZN 201 B GLU 127 1_555 ? ? ? ? ? ? ? 2.158 ? ? metalc8 metalc ? ? D ZN . ZN ? ? ? 1_555 L HOH . O ? ? A ZN 202 A HOH 709 1_555 ? ? ? ? ? ? ? 1.884 ? ? metalc9 metalc ? ? G ZN . ZN ? ? ? 1_555 I IMD . N3 ? ? A ZN 205 A IMD 207 1_555 ? ? ? ? ? ? ? 2.037 ? ? metalc10 metalc ? ? G ZN . ZN ? ? ? 1_555 B GLU 30 OE2 ? ? A ZN 205 B GLU 142 1_555 ? ? ? ? ? ? ? 1.942 ? ? metalc11 metalc ? ? G ZN . ZN ? ? ? 1_555 B GLU 30 OE1 ? ? A ZN 205 B GLU 142 1_555 ? ? ? ? ? ? ? 2.613 ? ? metalc12 metalc ? ? B GLU 13 OE2 ? ? ? 1_555 K ZN . ZN ? ? B GLU 125 B ZN 202 1_555 ? ? ? ? ? ? ? 2.496 ? ? metalc13 metalc ? ? B GLU 13 OE1 ? ? ? 1_555 K ZN . ZN ? ? B GLU 125 B ZN 202 1_555 ? ? ? ? ? ? ? 2.554 ? ? metalc14 metalc ? ? K ZN . ZN ? ? ? 1_555 M HOH . O ? ? B ZN 202 B HOH 303 1_555 ? ? ? ? ? ? ? 1.961 ? ? metalc15 metalc ? ? K ZN . ZN ? ? ? 1_555 M HOH . O ? ? B ZN 202 B HOH 319 1_555 ? ? ? ? ? ? ? 2.600 ? ? metalc16 metalc ? ? K ZN . ZN ? ? ? 1_555 M HOH . O ? ? B ZN 202 B HOH 320 1_555 ? ? ? ? ? ? ? 2.265 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? metalc ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLN A 44 ? PRO A 49 ? GLN A 156 PRO A 161 A 2 TRP A 36 ? TYR A 41 ? TRP A 148 TYR A 153 A 3 ARG A 25 ? MLY A 31 ? ARG A 137 MLY A 143 A 4 ILE A 2 ? VAL A 6 ? ILE A 114 VAL A 118 A 5 VAL A 53 ? GLU A 55 ? VAL A 165 GLU A 167 B 1 GLN B 44 ? PRO B 49 ? GLN B 156 PRO B 161 B 2 TRP B 36 ? TYR B 41 ? TRP B 148 TYR B 153 B 3 ARG B 25 ? MLY B 31 ? ARG B 137 MLY B 143 B 4 ILE B 2 ? VAL B 6 ? ILE B 114 VAL B 118 B 5 VAL B 53 ? GLU B 55 ? VAL B 165 GLU B 167 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O PHE A 48 ? O PHE A 160 N TRP A 37 ? N TRP A 149 A 2 3 O ARG A 38 ? O ARG A 150 N MSE A 29 ? N MSE A 141 A 3 4 O VAL A 28 ? O VAL A 140 N ILE A 2 ? N ILE A 114 A 4 5 N PHE A 5 ? N PHE A 117 O LEU A 54 ? O LEU A 166 B 1 2 O GLY B 46 ? O GLY B 158 N GLY B 39 ? N GLY B 151 B 2 3 O ARG B 38 ? O ARG B 150 N MSE B 29 ? N MSE B 141 B 3 4 O VAL B 28 ? O VAL B 140 N ILE B 2 ? N ILE B 114 B 4 5 N PHE B 5 ? N PHE B 117 O LEU B 54 ? O LEU B 166 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A ZN 201 ? 4 'BINDING SITE FOR RESIDUE ZN A 201' AC2 Software A ZN 202 ? 4 'BINDING SITE FOR RESIDUE ZN A 202' AC3 Software A ZN 203 ? 3 'BINDING SITE FOR RESIDUE ZN A 203' AC4 Software A IMD 204 ? 6 'BINDING SITE FOR RESIDUE IMD A 204' AC5 Software A ZN 205 ? 5 'BINDING SITE FOR RESIDUE ZN A 205' AC6 Software A IMD 207 ? 6 'BINDING SITE FOR RESIDUE IMD A 207' AC7 Software B ZN 202 ? 5 'BINDING SITE FOR RESIDUE ZN B 202' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 GLU A 30 ? GLU A 142 . ? 1_555 ? 2 AC1 4 IMD F . ? IMD A 204 . ? 1_555 ? 3 AC1 4 GLU B 15 ? GLU B 127 . ? 1_555 ? 4 AC1 4 ASP B 34 ? ASP B 146 . ? 10_665 ? 5 AC2 4 GLU A 13 ? GLU A 125 . ? 1_555 ? 6 AC2 4 HOH L . ? HOH A 708 . ? 1_555 ? 7 AC2 4 HOH L . ? HOH A 709 . ? 1_555 ? 8 AC2 4 HOH L . ? HOH A 711 . ? 1_555 ? 9 AC3 3 GLU A 56 ? GLU A 168 . ? 1_555 ? 10 AC3 3 ASP A 58 ? ASP A 170 . ? 1_555 ? 11 AC3 3 MLY B 31 ? MLY B 143 . ? 6_664 ? 12 AC4 6 GLU A 30 ? GLU A 142 . ? 1_555 ? 13 AC4 6 ZN C . ? ZN A 201 . ? 1_555 ? 14 AC4 6 GLU B 15 ? GLU B 127 . ? 1_555 ? 15 AC4 6 CYS B 32 ? CYS B 144 . ? 10_665 ? 16 AC4 6 ASP B 34 ? ASP B 146 . ? 10_665 ? 17 AC4 6 TRP B 47 ? TRP B 159 . ? 10_665 ? 18 AC5 5 GLU A 15 ? GLU A 127 . ? 1_555 ? 19 AC5 5 CYS A 32 ? CYS A 144 . ? 10_665 ? 20 AC5 5 ASP A 34 ? ASP A 146 . ? 10_665 ? 21 AC5 5 IMD I . ? IMD A 207 . ? 1_555 ? 22 AC5 5 GLU B 30 ? GLU B 142 . ? 1_555 ? 23 AC6 6 GLU A 15 ? GLU A 127 . ? 1_555 ? 24 AC6 6 CYS A 32 ? CYS A 144 . ? 10_665 ? 25 AC6 6 ASP A 34 ? ASP A 146 . ? 10_665 ? 26 AC6 6 TRP A 47 ? TRP A 159 . ? 10_665 ? 27 AC6 6 ZN G . ? ZN A 205 . ? 1_555 ? 28 AC6 6 GLU B 30 ? GLU B 142 . ? 1_555 ? 29 AC7 5 GLU B 13 ? GLU B 125 . ? 1_555 ? 30 AC7 5 HOH M . ? HOH B 302 . ? 1_555 ? 31 AC7 5 HOH M . ? HOH B 303 . ? 1_555 ? 32 AC7 5 HOH M . ? HOH B 319 . ? 1_555 ? 33 AC7 5 HOH M . ? HOH B 320 . ? 1_555 ? # _atom_sites.entry_id 4E6R _atom_sites.fract_transf_matrix[1][1] 0.009225 _atom_sites.fract_transf_matrix[1][2] 0.005326 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.010652 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.014663 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S SE ZN # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DMG 1 0 0 DMG DMG A . n A 1 2 ILE 2 114 114 ILE ILE A . n A 1 3 PRO 3 115 115 PRO PRO A . n A 1 4 ALA 4 116 116 ALA ALA A . n A 1 5 PHE 5 117 117 PHE PHE A . n A 1 6 VAL 6 118 118 VAL VAL A . n A 1 7 MLY 7 119 119 MLY MLY A . n A 1 8 PHE 8 120 120 PHE PHE A . n A 1 9 ALA 9 121 121 ALA ALA A . n A 1 10 TYR 10 122 122 TYR TYR A . n A 1 11 VAL 11 123 123 VAL VAL A . n A 1 12 ALA 12 124 124 ALA ALA A . n A 1 13 GLU 13 125 125 GLU GLU A . n A 1 14 ARG 14 126 126 ARG ARG A . n A 1 15 GLU 15 127 127 GLU GLU A . n A 1 16 ASP 16 128 128 ASP ASP A . n A 1 17 GLU 17 129 129 GLU GLU A . n A 1 18 LEU 18 130 130 LEU LEU A . n A 1 19 SER 19 131 131 SER SER A . n A 1 20 LEU 20 132 132 LEU LEU A . n A 1 21 VAL 21 133 133 VAL VAL A . n A 1 22 MLY 22 134 134 MLY MLY A . n A 1 23 GLY 23 135 135 GLY GLY A . n A 1 24 SER 24 136 136 SER SER A . n A 1 25 ARG 25 137 137 ARG ARG A . n A 1 26 VAL 26 138 138 VAL VAL A . n A 1 27 THR 27 139 139 THR THR A . n A 1 28 VAL 28 140 140 VAL VAL A . n A 1 29 MSE 29 141 141 MSE MSE A . n A 1 30 GLU 30 142 142 GLU GLU A . n A 1 31 MLY 31 143 143 MLY MLY A . n A 1 32 CYS 32 144 144 CYS CYS A . n A 1 33 SER 33 145 145 SER SER A . n A 1 34 ASP 34 146 146 ASP ASP A . n A 1 35 GLY 35 147 147 GLY GLY A . n A 1 36 TRP 36 148 148 TRP TRP A . n A 1 37 TRP 37 149 149 TRP TRP A . n A 1 38 ARG 38 150 150 ARG ARG A . n A 1 39 GLY 39 151 151 GLY GLY A . n A 1 40 SER 40 152 152 SER SER A . n A 1 41 TYR 41 153 153 TYR TYR A . n A 1 42 ASN 42 154 154 ASN ASN A . n A 1 43 GLY 43 155 155 GLY GLY A . n A 1 44 GLN 44 156 156 GLN GLN A . n A 1 45 ILE 45 157 157 ILE ILE A . n A 1 46 GLY 46 158 158 GLY GLY A . n A 1 47 TRP 47 159 159 TRP TRP A . n A 1 48 PHE 48 160 160 PHE PHE A . n A 1 49 PRO 49 161 161 PRO PRO A . n A 1 50 SER 50 162 162 SER SER A . n A 1 51 ASN 51 163 163 ASN ASN A . n A 1 52 TYR 52 164 164 TYR TYR A . n A 1 53 VAL 53 165 165 VAL VAL A . n A 1 54 LEU 54 166 166 LEU LEU A . n A 1 55 GLU 55 167 167 GLU GLU A . n A 1 56 GLU 56 168 168 GLU GLU A . n A 1 57 VAL 57 169 169 VAL VAL A . n A 1 58 ASP 58 170 170 ASP ASP A . n B 1 1 DMG 1 0 0 DMG DMG B . n B 1 2 ILE 2 114 114 ILE ILE B . n B 1 3 PRO 3 115 115 PRO PRO B . n B 1 4 ALA 4 116 116 ALA ALA B . n B 1 5 PHE 5 117 117 PHE PHE B . n B 1 6 VAL 6 118 118 VAL VAL B . n B 1 7 MLY 7 119 119 MLY MLY B . n B 1 8 PHE 8 120 120 PHE PHE B . n B 1 9 ALA 9 121 121 ALA ALA B . n B 1 10 TYR 10 122 122 TYR TYR B . n B 1 11 VAL 11 123 123 VAL VAL B . n B 1 12 ALA 12 124 124 ALA ALA B . n B 1 13 GLU 13 125 125 GLU GLU B . n B 1 14 ARG 14 126 126 ARG ARG B . n B 1 15 GLU 15 127 127 GLU GLU B . n B 1 16 ASP 16 128 128 ASP ASP B . n B 1 17 GLU 17 129 129 GLU GLU B . n B 1 18 LEU 18 130 130 LEU LEU B . n B 1 19 SER 19 131 131 SER SER B . n B 1 20 LEU 20 132 132 LEU LEU B . n B 1 21 VAL 21 133 133 VAL VAL B . n B 1 22 MLY 22 134 134 MLY MLY B . n B 1 23 GLY 23 135 135 GLY GLY B . n B 1 24 SER 24 136 136 SER SER B . n B 1 25 ARG 25 137 137 ARG ARG B . n B 1 26 VAL 26 138 138 VAL VAL B . n B 1 27 THR 27 139 139 THR THR B . n B 1 28 VAL 28 140 140 VAL VAL B . n B 1 29 MSE 29 141 141 MSE MSE B . n B 1 30 GLU 30 142 142 GLU GLU B . n B 1 31 MLY 31 143 143 MLY MLY B . n B 1 32 CYS 32 144 144 CYS CYS B . n B 1 33 SER 33 145 145 SER SER B . n B 1 34 ASP 34 146 146 ASP ASP B . n B 1 35 GLY 35 147 147 GLY GLY B . n B 1 36 TRP 36 148 148 TRP TRP B . n B 1 37 TRP 37 149 149 TRP TRP B . n B 1 38 ARG 38 150 150 ARG ARG B . n B 1 39 GLY 39 151 151 GLY GLY B . n B 1 40 SER 40 152 152 SER SER B . n B 1 41 TYR 41 153 153 TYR TYR B . n B 1 42 ASN 42 154 154 ASN ASN B . n B 1 43 GLY 43 155 155 GLY GLY B . n B 1 44 GLN 44 156 156 GLN GLN B . n B 1 45 ILE 45 157 157 ILE ILE B . n B 1 46 GLY 46 158 158 GLY GLY B . n B 1 47 TRP 47 159 159 TRP TRP B . n B 1 48 PHE 48 160 160 PHE PHE B . n B 1 49 PRO 49 161 161 PRO PRO B . n B 1 50 SER 50 162 162 SER SER B . n B 1 51 ASN 51 163 163 ASN ASN B . n B 1 52 TYR 52 164 164 TYR TYR B . n B 1 53 VAL 53 165 165 VAL VAL B . n B 1 54 LEU 54 166 166 LEU LEU B . n B 1 55 GLU 55 167 167 GLU GLU B . n B 1 56 GLU 56 168 168 GLU GLU B . n B 1 57 VAL 57 169 169 VAL VAL B . n B 1 58 ASP 58 170 170 ASP ASP B . n # loop_ _pdbx_SG_project.project_name _pdbx_SG_project.full_name_of_center _pdbx_SG_project.id _pdbx_SG_project.initial_of_center PSI:Biology 'Joint Center for Structural Genomics' 1 JCSG PSI:Biology 'Partnership for T-Cell Biology' 2 TCELL # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN 1 201 400 ZN ZN A . D 2 ZN 1 202 401 ZN ZN A . E 2 ZN 1 203 402 ZN ZN A . F 3 IMD 1 204 600 IMD IMD A . G 2 ZN 1 205 400 ZN ZN A . H 4 UNL 1 206 500 UNL UNL A . I 3 IMD 1 207 600 IMD IMD A . J 4 UNL 1 201 500 UNL UNL B . K 2 ZN 1 202 401 ZN ZN B . L 5 HOH 1 701 701 HOH HOH A . L 5 HOH 2 702 702 HOH HOH A . L 5 HOH 3 703 707 HOH HOH A . L 5 HOH 4 704 708 HOH HOH A . L 5 HOH 5 705 710 HOH HOH A . L 5 HOH 6 706 714 HOH HOH A . L 5 HOH 7 707 715 HOH HOH A . L 5 HOH 8 708 726 HOH HOH A . L 5 HOH 9 709 727 HOH HOH A . L 5 HOH 10 710 728 HOH HOH A . L 5 HOH 11 711 732 HOH HOH A . M 5 HOH 1 301 700 HOH HOH B . M 5 HOH 2 302 703 HOH HOH B . M 5 HOH 3 303 704 HOH HOH B . M 5 HOH 4 304 705 HOH HOH B . M 5 HOH 5 305 706 HOH HOH B . M 5 HOH 6 306 709 HOH HOH B . M 5 HOH 7 307 711 HOH HOH B . M 5 HOH 8 308 712 HOH HOH B . M 5 HOH 9 309 713 HOH HOH B . M 5 HOH 10 310 716 HOH HOH B . M 5 HOH 11 311 717 HOH HOH B . M 5 HOH 12 312 718 HOH HOH B . M 5 HOH 13 313 719 HOH HOH B . M 5 HOH 14 314 720 HOH HOH B . M 5 HOH 15 315 721 HOH HOH B . M 5 HOH 16 316 722 HOH HOH B . M 5 HOH 17 317 723 HOH HOH B . M 5 HOH 18 318 724 HOH HOH B . M 5 HOH 19 319 725 HOH HOH B . M 5 HOH 20 320 729 HOH HOH B . M 5 HOH 21 321 730 HOH HOH B . M 5 HOH 22 322 731 HOH HOH B . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MLY 7 A MLY 119 ? LYS N-DIMETHYL-LYSINE 2 A MLY 22 A MLY 134 ? LYS N-DIMETHYL-LYSINE 3 A MSE 29 A MSE 141 ? MET SELENOMETHIONINE 4 A MLY 31 A MLY 143 ? LYS N-DIMETHYL-LYSINE 5 B MLY 7 B MLY 119 ? LYS N-DIMETHYL-LYSINE 6 B MLY 22 B MLY 134 ? LYS N-DIMETHYL-LYSINE 7 B MSE 29 B MSE 141 ? MET SELENOMETHIONINE 8 B MLY 31 B MLY 143 ? LYS N-DIMETHYL-LYSINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 4500 ? 1 MORE -270 ? 1 'SSA (A^2)' 14050 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 10_665 -y+1,-x+1,-z+1/6 0.5000000000 -0.8660254038 0.0000000000 54.1990000000 -0.8660254038 -0.5000000000 0.0000000000 93.8754217194 0.0000000000 0.0000000000 -1.0000000000 11.3665000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OE1 ? A GLU 13 ? A GLU 125 ? 1_555 ZN ? D ZN . ? A ZN 202 ? 1_555 O ? L HOH . ? A HOH 709 ? 1_555 101.4 ? 2 OE1 ? A GLU 15 ? A GLU 127 ? 1_555 ZN ? G ZN . ? A ZN 205 ? 1_555 N3 ? I IMD . ? A IMD 207 ? 1_555 122.7 ? 3 OE1 ? A GLU 15 ? A GLU 127 ? 1_555 ZN ? G ZN . ? A ZN 205 ? 1_555 OE2 ? B GLU 30 ? B GLU 142 ? 1_555 147.5 ? 4 N3 ? I IMD . ? A IMD 207 ? 1_555 ZN ? G ZN . ? A ZN 205 ? 1_555 OE2 ? B GLU 30 ? B GLU 142 ? 1_555 84.6 ? 5 OE1 ? A GLU 15 ? A GLU 127 ? 1_555 ZN ? G ZN . ? A ZN 205 ? 1_555 OE1 ? B GLU 30 ? B GLU 142 ? 1_555 89.7 ? 6 N3 ? I IMD . ? A IMD 207 ? 1_555 ZN ? G ZN . ? A ZN 205 ? 1_555 OE1 ? B GLU 30 ? B GLU 142 ? 1_555 133.1 ? 7 OE2 ? B GLU 30 ? B GLU 142 ? 1_555 ZN ? G ZN . ? A ZN 205 ? 1_555 OE1 ? B GLU 30 ? B GLU 142 ? 1_555 57.8 ? 8 OE2 ? A GLU 30 ? A GLU 142 ? 1_555 ZN ? C ZN . ? A ZN 201 ? 1_555 OE1 ? A GLU 30 ? A GLU 142 ? 1_555 58.5 ? 9 OE2 ? A GLU 30 ? A GLU 142 ? 1_555 ZN ? C ZN . ? A ZN 201 ? 1_555 N3 ? F IMD . ? A IMD 204 ? 1_555 82.2 ? 10 OE1 ? A GLU 30 ? A GLU 142 ? 1_555 ZN ? C ZN . ? A ZN 201 ? 1_555 N3 ? F IMD . ? A IMD 204 ? 1_555 130.7 ? 11 OE2 ? A GLU 30 ? A GLU 142 ? 1_555 ZN ? C ZN . ? A ZN 201 ? 1_555 OE1 ? B GLU 15 ? B GLU 127 ? 1_555 134.7 ? 12 OE1 ? A GLU 30 ? A GLU 142 ? 1_555 ZN ? C ZN . ? A ZN 201 ? 1_555 OE1 ? B GLU 15 ? B GLU 127 ? 1_555 76.3 ? 13 N3 ? F IMD . ? A IMD 204 ? 1_555 ZN ? C ZN . ? A ZN 201 ? 1_555 OE1 ? B GLU 15 ? B GLU 127 ? 1_555 132.8 ? 14 OE2 ? B GLU 13 ? B GLU 125 ? 1_555 ZN ? K ZN . ? B ZN 202 ? 1_555 OE1 ? B GLU 13 ? B GLU 125 ? 1_555 53.1 ? 15 OE2 ? B GLU 13 ? B GLU 125 ? 1_555 ZN ? K ZN . ? B ZN 202 ? 1_555 O ? M HOH . ? B HOH 303 ? 1_555 74.7 ? 16 OE1 ? B GLU 13 ? B GLU 125 ? 1_555 ZN ? K ZN . ? B ZN 202 ? 1_555 O ? M HOH . ? B HOH 303 ? 1_555 124.4 ? 17 OE2 ? B GLU 13 ? B GLU 125 ? 1_555 ZN ? K ZN . ? B ZN 202 ? 1_555 O ? M HOH . ? B HOH 319 ? 1_555 124.5 ? 18 OE1 ? B GLU 13 ? B GLU 125 ? 1_555 ZN ? K ZN . ? B ZN 202 ? 1_555 O ? M HOH . ? B HOH 319 ? 1_555 75.6 ? 19 O ? M HOH . ? B HOH 303 ? 1_555 ZN ? K ZN . ? B ZN 202 ? 1_555 O ? M HOH . ? B HOH 319 ? 1_555 159.9 ? 20 OE2 ? B GLU 13 ? B GLU 125 ? 1_555 ZN ? K ZN . ? B ZN 202 ? 1_555 O ? M HOH . ? B HOH 320 ? 1_555 88.8 ? 21 OE1 ? B GLU 13 ? B GLU 125 ? 1_555 ZN ? K ZN . ? B ZN 202 ? 1_555 O ? M HOH . ? B HOH 320 ? 1_555 99.9 ? 22 O ? M HOH . ? B HOH 303 ? 1_555 ZN ? K ZN . ? B ZN 202 ? 1_555 O ? M HOH . ? B HOH 320 ? 1_555 96.3 ? 23 O ? M HOH . ? B HOH 319 ? 1_555 ZN ? K ZN . ? B ZN 202 ? 1_555 O ? M HOH . ? B HOH 320 ? 1_555 79.6 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-04-04 2 'Structure model' 1 1 2015-10-21 3 'Structure model' 1 2 2017-11-15 4 'Structure model' 1 3 2023-02-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 2 'Structure model' 'Structure summary' 3 3 'Structure model' 'Refinement description' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' database_2 3 4 'Structure model' pdbx_struct_conn_angle 4 4 'Structure model' struct_conn 5 4 'Structure model' struct_ref_seq_dif 6 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.classification' 2 3 'Structure model' '_software.name' 3 4 'Structure model' '_database_2.pdbx_DOI' 4 4 'Structure model' '_database_2.pdbx_database_accession' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 14 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 15 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 16 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 17 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 18 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 19 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 20 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 21 4 'Structure model' '_pdbx_struct_conn_angle.value' 22 4 'Structure model' '_struct_conn.pdbx_dist_value' 23 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 24 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 25 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 26 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 27 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 28 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 29 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 30 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 31 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 32 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 33 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 34 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 35 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 36 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 37 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 38 4 'Structure model' '_struct_ref_seq_dif.details' 39 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 40 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 41 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined -17.2190 88.7200 8.9070 0.2915 0.0299 0.6301 0.0535 0.0832 0.0476 2.7965 6.3993 4.9210 -0.4566 0.2837 -0.6364 -0.0293 0.0547 -0.0254 -0.1463 0.2006 0.1527 0.8685 -0.4138 0.0572 'X-RAY DIFFRACTION' 2 ? refined -11.4530 65.1500 19.5910 0.0625 0.0910 0.4596 0.0046 -0.0016 0.0514 5.9171 3.4780 3.3245 0.1863 1.2412 -0.2515 0.0996 0.0762 -0.1758 -0.6244 -0.1871 0.2243 0.4396 -0.1036 -0.3075 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 0 A 170 ? . . . . ? 'X-RAY DIFFRACTION' 2 2 B 0 B 170 ? . . . . ? # _phasing.method MAD # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 MolProbity 3beta29 ? package 'D.C. & J.S. Richardson lab' molprobity@kinemage.biochem.duke.edu 'model building' http://kinemage.biochem.duke.edu/molprobity/ ? ? 2 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 3 SHELX . ? package 'George M. Sheldrick' gsheldr@shelx.uni-ac.gwdg.de phasing http://shelx.uni-ac.gwdg.de/SHELX/ Fortran_77 ? 4 SHARP . ? package 'Eric de La Fortelle' sharp-develop@globalphasing.com phasing http://www.globalphasing.com/sharp/ ? ? 5 SCALA 3.3.20 ? package 'Phil Evans' pre@mrc-lmb.cam.ac.uk 'data scaling' ? ? ? 6 REFMAC 5.6.0117 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 7 MOSFLM . ? ? ? ? 'data reduction' ? ? ? 8 SHELXD . ? ? ? ? phasing ? ? ? # _pdbx_entry_details.entry_id 4E6R _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;1. THIS CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY RESIDUES 114-170 OF THE TARGET SEQUENCE. 2. THE PROTEIN WAS REDUCTIVELY METHYLATED PRIOR TO CRYSTALLIZATION. ; _pdbx_entry_details.has_ligand_of_interest ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 OD2 _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 ASP _pdbx_validate_close_contact.auth_seq_id_1 128 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O3 _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 UNL _pdbx_validate_close_contact.auth_seq_id_2 206 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.14 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 O3 B UNL 201 ? ? 1_555 O3 B UNL 201 ? ? 10_665 1.75 2 1 SG A CYS 144 ? B 1_555 OE2 B GLU 142 ? ? 10_665 2.13 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 CE2 _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 TRP _pdbx_validate_rmsd_bond.auth_seq_id_1 159 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 CD2 _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 TRP _pdbx_validate_rmsd_bond.auth_seq_id_2 159 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.483 _pdbx_validate_rmsd_bond.bond_target_value 1.409 _pdbx_validate_rmsd_bond.bond_deviation 0.074 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.012 _pdbx_validate_rmsd_bond.linker_flag N # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 CB _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 ASP _pdbx_validate_rmsd_angle.auth_seq_id_1 146 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 CG _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 ASP _pdbx_validate_rmsd_angle.auth_seq_id_2 146 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 OD1 _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 ASP _pdbx_validate_rmsd_angle.auth_seq_id_3 146 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 124.52 _pdbx_validate_rmsd_angle.angle_target_value 118.30 _pdbx_validate_rmsd_angle.angle_deviation 6.22 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.90 _pdbx_validate_rmsd_angle.linker_flag N # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id VAL _pdbx_validate_torsion.auth_asym_id B _pdbx_validate_torsion.auth_seq_id 169 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -144.40 _pdbx_validate_torsion.psi 49.58 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'ZINC ION' ZN 3 IMIDAZOLE IMD 4 'UNKNOWN LIGAND' UNL 5 water HOH #