HEADER TRANSFERASE 16-MAR-12 4E6Y TITLE TYPE II CITRATE SYNTHASE FROM VIBRIO VULNIFICUS. COMPND MOL_ID: 1; COMPND 2 MOLECULE: CITRATE SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 EC: 2.3.3.1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO VULNIFICUS; SOURCE 3 ORGANISM_TAXID: 216895; SOURCE 4 STRAIN: CMCP6; SOURCE 5 GENE: GLTA, VV1_0162; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS STRUCTURAL GENOMICS, TYPE II CITRATE SYNTHASE, CENTER FOR STRUCTURAL KEYWDS 2 GENOMICS OF INFECTIOUS DISEASES, CSGID, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.OSIPIUK,M.GU,K.KWON,W.F.ANDERSON,A.JOACHIMIAK,CENTER FOR STRUCTURAL AUTHOR 2 GENOMICS OF INFECTIOUS DISEASES (CSGID) REVDAT 4 06-DEC-23 4E6Y 1 REMARK REVDAT 3 13-SEP-23 4E6Y 1 REMARK SEQADV LINK REVDAT 2 15-NOV-17 4E6Y 1 REMARK REVDAT 1 28-MAR-12 4E6Y 0 JRNL AUTH J.OSIPIUK,M.GU,K.KWON,W.F.ANDERSON,A.JOACHIMIAK JRNL TITL TYPE II CITRATE SYNTHASE FROM VIBRIO VULNIFICUS. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.40 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 19512 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 996 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.56 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1179 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.60 REMARK 3 BIN R VALUE (WORKING SET) : 0.2530 REMARK 3 BIN FREE R VALUE SET COUNT : 60 REMARK 3 BIN FREE R VALUE : 0.3440 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3371 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 50 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 57.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 52.48 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.83000 REMARK 3 B22 (A**2) : -0.83000 REMARK 3 B33 (A**2) : 1.24000 REMARK 3 B12 (A**2) : -0.41000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.407 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.254 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.182 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 17.645 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.942 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3465 ; 0.014 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4692 ; 1.673 ; 1.954 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 425 ; 6.158 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 164 ;36.890 ;23.476 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 568 ;18.123 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 23 ;23.489 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 506 ; 0.107 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2667 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -10 A 9999 REMARK 3 ORIGIN FOR THE GROUP (A): 20.9121 25.7548 13.5515 REMARK 3 T TENSOR REMARK 3 T11: 0.0223 T22: 0.0449 REMARK 3 T33: 0.0412 T12: -0.0122 REMARK 3 T13: 0.0002 T23: -0.0019 REMARK 3 L TENSOR REMARK 3 L11: 0.4289 L22: 0.7141 REMARK 3 L33: 0.9798 L12: 0.1203 REMARK 3 L13: 0.1409 L23: -0.2855 REMARK 3 S TENSOR REMARK 3 S11: -0.0145 S12: 0.0256 S13: 0.0013 REMARK 3 S21: -0.0245 S22: -0.0259 S23: -0.1559 REMARK 3 S31: -0.0610 S32: 0.2024 S33: 0.0404 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 4E6Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-MAR-12. REMARK 100 THE DEPOSITION ID IS D_1000071246. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-FEB-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-3000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19591 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 45.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 17.40 REMARK 200 R MERGE (I) : 0.14600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 17.40 REMARK 200 R MERGE FOR SHELL (I) : 0.93900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP, HKL-3000 REMARK 200 STARTING MODEL: PDB ENTRY 3L96 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M SODIUM FORMATE, 20 % PEG-3350, REMARK 280 20 MM HEPES BUFFER, PH 8.0, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z+1/2 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 76.82450 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 76.82450 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 76.82450 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 76.82450 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 76.82450 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 76.82450 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BASED ON PISA REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 4 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 5 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33820 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -80.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 606 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A -2 REMARK 465 ASN A -1 REMARK 465 ALA A 0 REMARK 465 MSE A 1 REMARK 465 ALA A 2 REMARK 465 GLU A 429 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE2 GLU A 231 NH1 ARG A 409 7555 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 265 CG HIS A 265 CD2 0.056 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MSE A 202 CG - SE - CE ANGL. DEV. = -13.2 DEGREES REMARK 500 PRO A 298 C - N - CA ANGL. DEV. = 9.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 10 -92.50 -101.41 REMARK 500 GLU A 11 -54.00 -143.59 REMARK 500 ASP A 44 79.23 -152.24 REMARK 500 ARG A 70 50.24 31.80 REMARK 500 HIS A 123 8.53 -66.74 REMARK 500 HIS A 230 40.89 -145.64 REMARK 500 GLU A 231 -148.50 64.71 REMARK 500 ASP A 294 106.58 -55.14 REMARK 500 TYR A 312 128.14 -171.62 REMARK 500 SER A 349 -77.08 -121.16 REMARK 500 ASP A 350 119.51 -22.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FMT A 504 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: CSGID-IDP91458 RELATED DB: TARGETTRACK DBREF 4E6Y A 1 429 UNP Q8DFP4 Q8DFP4_VIBVU 1 429 SEQADV 4E6Y SER A -2 UNP Q8DFP4 EXPRESSION TAG SEQADV 4E6Y ASN A -1 UNP Q8DFP4 EXPRESSION TAG SEQADV 4E6Y ALA A 0 UNP Q8DFP4 EXPRESSION TAG SEQRES 1 A 432 SER ASN ALA MSE ALA ASP LYS LYS ALA THR LEU HIS VAL SEQRES 2 A 432 GLU GLY LYS ALA PRO ILE GLU LEU PRO ILE MSE GLU GLY SEQRES 3 A 432 SER LEU GLY THR PRO VAL ILE ASP VAL ARG LYS LEU GLY SEQRES 4 A 432 ALA ASN GLY TYR PHE THR PHE ASP PRO GLY PHE LEU ALA SEQRES 5 A 432 THR ALA SER CYS GLU SER GLN ILE THR TYR ILE ASP GLY SEQRES 6 A 432 GLY LYS GLY ILE LEU LEU HIS ARG GLY TYR PRO ILE ASP SEQRES 7 A 432 GLN LEU ALA ASN ASN ALA ASP TYR LEU GLU VAL CYS TYR SEQRES 8 A 432 ILE LEU LEU TYR GLY GLU ALA PRO THR ARG GLU GLN TYR SEQRES 9 A 432 GLU LYS PHE LYS THR THR VAL THR ARG HIS THR MSE VAL SEQRES 10 A 432 HIS GLU GLN ILE ALA SER PHE PHE HIS GLY PHE ARG ARG SEQRES 11 A 432 ASP ALA HIS PRO MSE ALA VAL MSE CYS GLY VAL VAL GLY SEQRES 12 A 432 ALA LEU ALA ALA PHE TYR HIS ASP SER LEU ASP ILE ASN SEQRES 13 A 432 ASN ASP LEU HIS ARG GLU ILE THR ALA TYR ARG LEU LEU SEQRES 14 A 432 SER LYS MSE PRO THR LEU ALA ALA MSE CYS TYR LYS TYR SEQRES 15 A 432 SER THR GLY GLN PRO PHE ILE TYR PRO ARG ASN ASP LEU SEQRES 16 A 432 SER TYR ALA GLU ASN PHE LEU HIS MSE MSE PHE ALA THR SEQRES 17 A 432 PRO CYS GLU GLU TYR GLU VAL ASN PRO VAL VAL ALA ARG SEQRES 18 A 432 ALA MSE ASP LYS ILE PHE THR LEU HIS ALA ASP HIS GLU SEQRES 19 A 432 GLN ASN ALA SER THR SER THR VAL ARG LEU ALA GLY SER SEQRES 20 A 432 SER GLY ALA ASN PRO PHE ALA CYS ILE ALA ALA GLY ILE SEQRES 21 A 432 ALA SER LEU TRP GLY PRO ALA HIS GLY GLY ALA ASN GLU SEQRES 22 A 432 ALA CYS LEU LYS MSE LEU GLU GLU ILE GLY SER VAL ASP SEQRES 23 A 432 ASN ILE PRO GLU TYR VAL ASP ARG ALA LYS ASP LYS ASP SEQRES 24 A 432 ASP PRO PHE ARG LEU MSE GLY PHE GLY HIS ARG VAL TYR SEQRES 25 A 432 LYS ASN TYR ASP PRO ARG ALA THR VAL MSE ARG GLU THR SEQRES 26 A 432 CYS HIS GLU VAL LEU LYS GLU LEU ASN ILE GLN ASP PRO SEQRES 27 A 432 LEU LEU ASP VAL ALA MSE GLU LEU GLU ARG ILE ALA LEU SEQRES 28 A 432 SER ASP GLU TYR PHE VAL SER LYS LYS LEU TYR PRO ASN SEQRES 29 A 432 VAL ASP PHE TYR SER GLY ILE ILE LEU LYS ALA ILE GLY SEQRES 30 A 432 ILE PRO VAL SER MSE PHE THR VAL ILE PHE ALA ILE SER SEQRES 31 A 432 ARG THR ILE GLY TRP ILE ALA HIS TRP ASN GLU MSE HIS SEQRES 32 A 432 SER ASP PRO LEU ASN ARG ILE GLY ARG PRO ARG GLN LEU SEQRES 33 A 432 TYR THR GLY GLU VAL GLN ARG ASP PHE GLN PRO MSE HIS SEQRES 34 A 432 GLU ARG GLU MODRES 4E6Y MSE A 21 MET SELENOMETHIONINE MODRES 4E6Y MSE A 113 MET SELENOMETHIONINE MODRES 4E6Y MSE A 132 MET SELENOMETHIONINE MODRES 4E6Y MSE A 135 MET SELENOMETHIONINE MODRES 4E6Y MSE A 169 MET SELENOMETHIONINE MODRES 4E6Y MSE A 175 MET SELENOMETHIONINE MODRES 4E6Y MSE A 201 MET SELENOMETHIONINE MODRES 4E6Y MSE A 202 MET SELENOMETHIONINE MODRES 4E6Y MSE A 220 MET SELENOMETHIONINE MODRES 4E6Y MSE A 275 MET SELENOMETHIONINE MODRES 4E6Y MSE A 302 MET SELENOMETHIONINE MODRES 4E6Y MSE A 319 MET SELENOMETHIONINE MODRES 4E6Y MSE A 341 MET SELENOMETHIONINE MODRES 4E6Y MSE A 379 MET SELENOMETHIONINE MODRES 4E6Y MSE A 399 MET SELENOMETHIONINE MODRES 4E6Y MSE A 425 MET SELENOMETHIONINE HET MSE A 21 8 HET MSE A 113 8 HET MSE A 132 8 HET MSE A 135 8 HET MSE A 169 8 HET MSE A 175 8 HET MSE A 201 8 HET MSE A 202 8 HET MSE A 220 8 HET MSE A 275 8 HET MSE A 302 8 HET MSE A 319 8 HET MSE A 341 8 HET MSE A 379 8 HET MSE A 399 8 HET MSE A 425 8 HET FMT A 501 3 HET FMT A 502 3 HET FMT A 503 3 HET FMT A 504 3 HETNAM MSE SELENOMETHIONINE HETNAM FMT FORMIC ACID FORMUL 1 MSE 16(C5 H11 N O2 SE) FORMUL 2 FMT 4(C H2 O2) FORMUL 6 HOH *50(H2 O) HELIX 1 1 LEU A 35 GLY A 39 5 5 HELIX 2 2 ASP A 44 LEU A 48 5 5 HELIX 3 3 ILE A 74 ALA A 81 1 8 HELIX 4 4 ASP A 82 GLY A 93 1 12 HELIX 5 5 THR A 97 HIS A 111 1 15 HELIX 6 6 HIS A 115 PHE A 121 1 7 HELIX 7 7 PHE A 122 PHE A 125 5 4 HELIX 8 8 HIS A 130 HIS A 147 1 18 HELIX 9 9 ASP A 148 LEU A 150 5 3 HELIX 10 10 ASN A 154 GLY A 182 1 29 HELIX 11 11 SER A 193 ALA A 204 1 12 HELIX 12 12 ASN A 213 HIS A 227 1 15 HELIX 13 13 ASN A 233 SER A 244 1 12 HELIX 14 14 ASN A 248 GLY A 262 1 15 HELIX 15 15 GLY A 262 GLY A 267 1 6 HELIX 16 16 GLY A 267 GLY A 280 1 14 HELIX 17 17 SER A 281 ASP A 283 5 3 HELIX 18 18 ASN A 284 ASP A 294 1 11 HELIX 19 19 ASP A 313 ASN A 331 1 19 HELIX 20 20 ASP A 334 LEU A 348 1 15 HELIX 21 21 ASP A 350 LYS A 356 1 7 HELIX 22 22 ASN A 361 ILE A 373 1 13 HELIX 23 23 PRO A 376 SER A 378 5 3 HELIX 24 24 MSE A 379 ASP A 402 1 24 HELIX 25 25 PRO A 424 ARG A 428 5 5 SHEET 1 A 3 LYS A 5 LEU A 8 0 SHEET 2 A 3 ILE A 16 MSE A 21 -1 O LEU A 18 N ALA A 6 SHEET 3 A 3 VAL A 29 ILE A 30 -1 O VAL A 29 N MSE A 21 SHEET 1 B 3 THR A 58 ASP A 61 0 SHEET 2 B 3 ILE A 66 HIS A 69 -1 O LEU A 68 N TYR A 59 SHEET 3 B 3 TYR A 72 PRO A 73 -1 O TYR A 72 N HIS A 69 LINK C ILE A 20 N MSE A 21 1555 1555 1.33 LINK C MSE A 21 N GLU A 22 1555 1555 1.32 LINK C THR A 112 N MSE A 113 1555 1555 1.33 LINK C MSE A 113 N VAL A 114 1555 1555 1.32 LINK C PRO A 131 N MSE A 132 1555 1555 1.34 LINK C MSE A 132 N ALA A 133 1555 1555 1.35 LINK C VAL A 134 N MSE A 135 1555 1555 1.32 LINK C MSE A 135 N CYS A 136 1555 1555 1.34 LINK C LYS A 168 N MSE A 169 1555 1555 1.32 LINK C MSE A 169 N PRO A 170 1555 1555 1.34 LINK C ALA A 174 N MSE A 175 1555 1555 1.33 LINK C MSE A 175 N CYS A 176 1555 1555 1.33 LINK C HIS A 200 N MSE A 201 1555 1555 1.33 LINK C MSE A 201 N MSE A 202 1555 1555 1.32 LINK C MSE A 202 N PHE A 203 1555 1555 1.35 LINK C ALA A 219 N MSE A 220 1555 1555 1.33 LINK C MSE A 220 N ASP A 221 1555 1555 1.32 LINK C LYS A 274 N MSE A 275 1555 1555 1.32 LINK C MSE A 275 N LEU A 276 1555 1555 1.32 LINK C LEU A 301 N MSE A 302 1555 1555 1.33 LINK C MSE A 302 N GLY A 303 1555 1555 1.34 LINK C VAL A 318 N MSE A 319 1555 1555 1.34 LINK C MSE A 319 N ARG A 320 1555 1555 1.33 LINK C ALA A 340 N MSE A 341 1555 1555 1.33 LINK C MSE A 341 N GLU A 342 1555 1555 1.33 LINK C SER A 378 N MSE A 379 1555 1555 1.32 LINK C MSE A 379 N PHE A 380 1555 1555 1.33 LINK C GLU A 398 N MSE A 399 1555 1555 1.33 LINK C MSE A 399 N HIS A 400 1555 1555 1.32 LINK C PRO A 424 N MSE A 425 1555 1555 1.33 LINK C MSE A 425 N HIS A 426 1555 1555 1.32 SITE 1 AC1 3 GLN A 56 GLU A 398 ASP A 402 SITE 1 AC2 3 GLU A 85 MSE A 425 HOH A 645 SITE 1 AC3 4 GLU A 116 HIS A 123 ARG A 127 GLN A 183 SITE 1 AC4 1 SER A 193 CRYST1 109.717 109.717 153.649 90.00 90.00 120.00 P 63 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009114 0.005262 0.000000 0.00000 SCALE2 0.000000 0.010524 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006508 0.00000