data_4E9F # _entry.id 4E9F # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4E9F pdb_00004e9f 10.2210/pdb4e9f/pdb NDB NA1687 ? ? RCSB RCSB071335 ? ? WWPDB D_1000071335 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 4E9E . unspecified PDB 4E9G . unspecified PDB 4E9H . unspecified PDB 4EA4 . unspecified PDB 4EAB . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4E9F _pdbx_database_status.recvd_initial_deposition_date 2012-03-21 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Morera, S.' 1 'Vigouroux, A.' 2 # _citation.id primary _citation.title ;Biochemical and structural characterization of the glycosylase domain of MBD4 bound to thymine and 5-hydroxymethyuracil-containing DNA. ; _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_volume 40 _citation.page_first 9917 _citation.page_last 9926 _citation.year 2012 _citation.journal_id_ASTM NARHAD _citation.country UK _citation.journal_id_ISSN 0305-1048 _citation.journal_id_CSD 0389 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22848106 _citation.pdbx_database_id_DOI 10.1093/nar/gks714 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Morera, S.' 1 ? primary 'Grin, I.' 2 ? primary 'Vigouroux, A.' 3 ? primary 'Couve, S.' 4 ? primary 'Henriot, V.' 5 ? primary 'Saparbaev, M.' 6 ? primary 'Ishchenko, A.A.' 7 ? # _cell.entry_id 4E9F _cell.length_a 41.070 _cell.length_b 55.840 _cell.length_c 96.650 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4E9F _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Methyl-CpG-binding domain protein 4' 19416.393 1 3.2.2.- ? 'glycosylase domain of MBD4 (residues 426-580)' ? 2 polymer syn ;DNA (5'-D(*CP*CP*AP*GP*CP*GP*(3DR)P*GP*CP*AP*GP*C)-3') ; 3524.284 1 ? ? ? 'DNA fragment with 3DR site' 3 polymer syn ;DNA (5'-D(*GP*CP*TP*GP*CP*GP*CP*GP*CP*TP*GP*G)-3') ; 3695.390 1 ? ? ? 'DNA fragment' 4 non-polymer syn 1,2-ETHANEDIOL 62.068 1 ? ? ? ? 5 water nat water 18.015 86 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Methyl-CpG-binding endonuclease 1, Methyl-CpG-binding protein MBD4, Mismatch-specific DNA N-glycosylase' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;MLSPPRRKAFKKWTPPRSPFNLVQETLFHDPWKLLIATIFLNRTSGKMAIPVLWKFLEKYPSAEVARTADWRDVSELLKP LGLYDLRAKTIVKFSDEYLTKQWKYPIELHGIGKYGNDSYRIFCVNEWKQVHPEDHKLNKYHDWLWENHEKLSLSHHHHH H ; ;MLSPPRRKAFKKWTPPRSPFNLVQETLFHDPWKLLIATIFLNRTSGKMAIPVLWKFLEKYPSAEVARTADWRDVSELLKP LGLYDLRAKTIVKFSDEYLTKQWKYPIELHGIGKYGNDSYRIFCVNEWKQVHPEDHKLNKYHDWLWENHEKLSLSHHHHH H ; A ? 2 polydeoxyribonucleotide no yes '(DC)(DC)(DA)(DG)(DC)(DG)(3DR)(DG)(DC)(DA)(DG)(DC)' CCAGCGNGCAGC C ? 3 polydeoxyribonucleotide no no '(DG)(DC)(DT)(DG)(DC)(DG)(DC)(DG)(DC)(DT)(DG)(DG)' GCTGCGCGCTGG D ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 LEU n 1 3 SER n 1 4 PRO n 1 5 PRO n 1 6 ARG n 1 7 ARG n 1 8 LYS n 1 9 ALA n 1 10 PHE n 1 11 LYS n 1 12 LYS n 1 13 TRP n 1 14 THR n 1 15 PRO n 1 16 PRO n 1 17 ARG n 1 18 SER n 1 19 PRO n 1 20 PHE n 1 21 ASN n 1 22 LEU n 1 23 VAL n 1 24 GLN n 1 25 GLU n 1 26 THR n 1 27 LEU n 1 28 PHE n 1 29 HIS n 1 30 ASP n 1 31 PRO n 1 32 TRP n 1 33 LYS n 1 34 LEU n 1 35 LEU n 1 36 ILE n 1 37 ALA n 1 38 THR n 1 39 ILE n 1 40 PHE n 1 41 LEU n 1 42 ASN n 1 43 ARG n 1 44 THR n 1 45 SER n 1 46 GLY n 1 47 LYS n 1 48 MET n 1 49 ALA n 1 50 ILE n 1 51 PRO n 1 52 VAL n 1 53 LEU n 1 54 TRP n 1 55 LYS n 1 56 PHE n 1 57 LEU n 1 58 GLU n 1 59 LYS n 1 60 TYR n 1 61 PRO n 1 62 SER n 1 63 ALA n 1 64 GLU n 1 65 VAL n 1 66 ALA n 1 67 ARG n 1 68 THR n 1 69 ALA n 1 70 ASP n 1 71 TRP n 1 72 ARG n 1 73 ASP n 1 74 VAL n 1 75 SER n 1 76 GLU n 1 77 LEU n 1 78 LEU n 1 79 LYS n 1 80 PRO n 1 81 LEU n 1 82 GLY n 1 83 LEU n 1 84 TYR n 1 85 ASP n 1 86 LEU n 1 87 ARG n 1 88 ALA n 1 89 LYS n 1 90 THR n 1 91 ILE n 1 92 VAL n 1 93 LYS n 1 94 PHE n 1 95 SER n 1 96 ASP n 1 97 GLU n 1 98 TYR n 1 99 LEU n 1 100 THR n 1 101 LYS n 1 102 GLN n 1 103 TRP n 1 104 LYS n 1 105 TYR n 1 106 PRO n 1 107 ILE n 1 108 GLU n 1 109 LEU n 1 110 HIS n 1 111 GLY n 1 112 ILE n 1 113 GLY n 1 114 LYS n 1 115 TYR n 1 116 GLY n 1 117 ASN n 1 118 ASP n 1 119 SER n 1 120 TYR n 1 121 ARG n 1 122 ILE n 1 123 PHE n 1 124 CYS n 1 125 VAL n 1 126 ASN n 1 127 GLU n 1 128 TRP n 1 129 LYS n 1 130 GLN n 1 131 VAL n 1 132 HIS n 1 133 PRO n 1 134 GLU n 1 135 ASP n 1 136 HIS n 1 137 LYS n 1 138 LEU n 1 139 ASN n 1 140 LYS n 1 141 TYR n 1 142 HIS n 1 143 ASP n 1 144 TRP n 1 145 LEU n 1 146 TRP n 1 147 GLU n 1 148 ASN n 1 149 HIS n 1 150 GLU n 1 151 LYS n 1 152 LEU n 1 153 SER n 1 154 LEU n 1 155 SER n 1 156 HIS n 1 157 HIS n 1 158 HIS n 1 159 HIS n 1 160 HIS n 1 161 HIS n 2 1 DC n 2 2 DC n 2 3 DA n 2 4 DG n 2 5 DC n 2 6 DG n 2 7 3DR n 2 8 DG n 2 9 DC n 2 10 DA n 2 11 DG n 2 12 DC n 3 1 DG n 3 2 DC n 3 3 DT n 3 4 DG n 3 5 DC n 3 6 DG n 3 7 DC n 3 8 DG n 3 9 DC n 3 10 DT n 3 11 DG n 3 12 DG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'MBD4, MED1' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 2 1 sample ? ? ? ? ? 'Synthetic DNA' 3 1 sample ? ? ? ? ? 'Synthetic DNA' # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP MBD4_HUMAN O95243 1 ;LSPPRRKAFKKWTPPRSPFNLVQETLFHDPWKLLIATIFLNRTSGKMAIPVLWKFLEKYPSAEVARTADWRDVSELLKPL GLYDLRAKTIVKFSDEYLTKQWKYPIELHGIGKYGNDSYRIFCVNEWKQVHPEDHKLNKYHDWLWENHEKLSLS ; 427 ? 2 PDB 4E9F 4E9F 2 CCAGCGNGCAGC 1 ? 3 PDB 4E9F 4E9F 3 GCTGCGCGCTGG 1 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4E9F A 2 ? 155 ? O95243 427 ? 580 ? 427 580 2 2 4E9F C 1 ? 12 ? 4E9F 1 ? 12 ? 1 12 3 3 4E9F D 1 ? 12 ? 4E9F 1 ? 12 ? 1 12 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4E9F MET A 1 ? UNP O95243 ? ? 'expression tag' 426 1 1 4E9F HIS A 156 ? UNP O95243 ? ? 'expression tag' 581 2 1 4E9F HIS A 157 ? UNP O95243 ? ? 'expression tag' 582 3 1 4E9F HIS A 158 ? UNP O95243 ? ? 'expression tag' 583 4 1 4E9F HIS A 159 ? UNP O95243 ? ? 'expression tag' 584 5 1 4E9F HIS A 160 ? UNP O95243 ? ? 'expression tag' 585 6 1 4E9F HIS A 161 ? UNP O95243 ? ? 'expression tag' 586 7 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 3DR 'DNA linking' . "1',2'-DIDEOXYRIBOFURANOSE-5'-PHOSPHATE" 'ABASIC DIDEOXYRIBOSE' 'C5 H11 O6 P' 198.111 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4E9F _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.08 _exptl_crystal.density_percent_sol 40.88 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8 _exptl_crystal_grow.pdbx_details '25% ethylene glycol, pH 8, VAPOR DIFFUSION, HANGING DROP, temperature 298K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector PIXEL _diffrn_detector.type 'PSI PILATUS 6M' _diffrn_detector.pdbx_collection_date 2011-08-29 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si 111 CHANNEL' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID29' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID29 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9 # _reflns.entry_id 4E9F _reflns.observed_criterion_sigma_I 2 _reflns.observed_criterion_sigma_F 2 _reflns.d_resolution_low 38 _reflns.d_resolution_high 1.79 _reflns.number_obs 21525 _reflns.number_all 21600 _reflns.percent_possible_obs 99.6 _reflns.pdbx_Rmerge_I_obs 0.063 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 13.3 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.79 _reflns_shell.d_res_low 1.9 _reflns_shell.percent_possible_all 98.5 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 4E9F _refine.ls_number_reflns_obs 21487 _refine.ls_number_reflns_all 21600 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 37.80 _refine.ls_d_res_high 1.79 _refine.ls_percent_reflns_obs 99.27 _refine.ls_R_factor_obs 0.2158 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2141 _refine.ls_R_factor_R_free 0.2485 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.12 _refine.ls_number_reflns_R_free 1101 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.9431 _refine.correlation_coeff_Fo_to_Fc_free 0.9289 _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 'PDB ENTRY 4ENE' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI 0.132 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 4E9F _refine_analyze.Luzzati_coordinate_error_obs 0.238 _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1179 _refine_hist.pdbx_number_atoms_nucleic_acid 478 _refine_hist.pdbx_number_atoms_ligand 4 _refine_hist.number_atoms_solvent 86 _refine_hist.number_atoms_total 1747 _refine_hist.d_res_high 1.79 _refine_hist.d_res_low 37.80 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id t_bond_d 0.010 ? 2.00 1760 HARMONIC 'X-RAY DIFFRACTION' t_angle_deg 1.07 ? 2.00 2479 HARMONIC 'X-RAY DIFFRACTION' t_dihedral_angle_d ? ? 2.00 678 SINUSOIDAL 'X-RAY DIFFRACTION' t_trig_c_planes ? ? 2.00 26 HARMONIC 'X-RAY DIFFRACTION' t_gen_planes ? ? 5.00 193 HARMONIC 'X-RAY DIFFRACTION' t_it ? ? 20.00 1760 HARMONIC 'X-RAY DIFFRACTION' t_omega_torsion 3.21 ? ? ? ? 'X-RAY DIFFRACTION' t_other_torsion 18.29 ? ? ? ? 'X-RAY DIFFRACTION' t_chiral_improper_torsion ? ? 5.00 216 SEMIHARMONIC 'X-RAY DIFFRACTION' t_ideal_dist_contact ? ? 4.00 1915 SEMIHARMONIC 'X-RAY DIFFRACTION' # _refine_ls_shell.pdbx_total_number_of_bins_used 11 _refine_ls_shell.d_res_high 1.79 _refine_ls_shell.d_res_low 1.88 _refine_ls_shell.number_reflns_R_work 2564 _refine_ls_shell.R_factor_R_work 0.2340 _refine_ls_shell.percent_reflns_obs 99.27 _refine_ls_shell.R_factor_R_free 0.1973 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free 5.18 _refine_ls_shell.number_reflns_R_free 140 _refine_ls_shell.number_reflns_all 2704 _refine_ls_shell.R_factor_all 0.2319 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 4E9F _struct.title 'Structure of the glycosylase domain of MBD4 bound to AP site containing DNA' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4E9F _struct_keywords.pdbx_keywords HYDROLASE/DNA _struct_keywords.text 'HhH DNA glycosylase family, HYDROLASE-DNA complex' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 5 ? G N N 5 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 VAL A 23 ? PHE A 28 ? VAL A 448 PHE A 453 1 ? 6 HELX_P HELX_P2 2 ASP A 30 ? LEU A 41 ? ASP A 455 LEU A 466 1 ? 12 HELX_P HELX_P3 3 SER A 45 ? TYR A 60 ? SER A 470 TYR A 485 1 ? 16 HELX_P HELX_P4 4 SER A 62 ? ARG A 67 ? SER A 487 ARG A 492 1 ? 6 HELX_P HELX_P5 5 ASP A 70 ? LYS A 79 ? ASP A 495 LYS A 504 1 ? 10 HELX_P HELX_P6 6 PRO A 80 ? GLY A 82 ? PRO A 505 GLY A 507 5 ? 3 HELX_P HELX_P7 7 LEU A 83 ? LYS A 101 ? LEU A 508 LYS A 526 1 ? 19 HELX_P HELX_P8 8 TYR A 105 ? LEU A 109 ? TYR A 530 LEU A 534 5 ? 5 HELX_P HELX_P9 9 GLY A 113 ? CYS A 124 ? GLY A 538 CYS A 549 1 ? 12 HELX_P HELX_P10 10 GLU A 127 ? VAL A 131 ? GLU A 552 VAL A 556 5 ? 5 HELX_P HELX_P11 11 ASP A 135 ? ASN A 148 ? ASP A 560 ASN A 573 1 ? 14 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? B DG 6 "O3'" ? ? ? 1_555 B 3DR 7 P ? ? C DG 6 C 3DR 7 1_555 ? ? ? ? ? ? ? 1.656 ? ? covale2 covale both ? B 3DR 7 "O3'" ? ? ? 1_555 B DG 8 P ? ? C 3DR 7 C DG 8 1_555 ? ? ? ? ? ? ? 1.605 ? ? hydrog1 hydrog ? ? B DC 1 N4 ? ? ? 1_555 C DG 12 O6 ? ? C DC 1 D DG 12 1_555 ? ? ? ? ? ? 'DC-DG PAIR' ? ? ? hydrog2 hydrog ? ? B DC 2 O2 ? ? ? 1_555 C DG 11 N1 ? ? C DC 2 D DG 11 1_555 ? ? ? ? ? ? 'DC-DG PAIR' ? ? ? hydrog3 hydrog ? ? B DA 3 N1 ? ? ? 1_555 C DT 10 N3 ? ? C DA 3 D DT 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? B DA 3 N6 ? ? ? 1_555 C DT 10 O4 ? ? C DA 3 D DT 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? B DG 4 N1 ? ? ? 1_555 C DC 9 N3 ? ? C DG 4 D DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? B DG 4 N2 ? ? ? 1_555 C DC 9 O2 ? ? C DG 4 D DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? B DG 4 O6 ? ? ? 1_555 C DC 9 N4 ? ? C DG 4 D DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? B DC 5 N3 ? ? ? 1_555 C DG 8 N1 ? ? C DC 5 D DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? B DC 5 N4 ? ? ? 1_555 C DG 8 O6 ? ? C DC 5 D DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? B DC 5 O2 ? ? ? 1_555 C DG 8 N2 ? ? C DC 5 D DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? B DG 6 N1 ? ? ? 1_555 C DC 7 N3 ? ? C DG 6 D DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? B DG 6 N2 ? ? ? 1_555 C DC 7 O2 ? ? C DG 6 D DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? B DG 6 O6 ? ? ? 1_555 C DC 7 N4 ? ? C DG 6 D DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? B DG 8 N1 ? ? ? 1_555 C DC 5 N3 ? ? C DG 8 D DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? B DG 8 N2 ? ? ? 1_555 C DC 5 O2 ? ? C DG 8 D DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? B DG 8 O6 ? ? ? 1_555 C DC 5 N4 ? ? C DG 8 D DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? B DC 9 N3 ? ? ? 1_555 C DG 4 N1 ? ? C DC 9 D DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? B DC 9 N4 ? ? ? 1_555 C DG 4 O6 ? ? C DC 9 D DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? B DC 9 O2 ? ? ? 1_555 C DG 4 N2 ? ? C DC 9 D DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? B DA 10 N1 ? ? ? 1_555 C DT 3 N3 ? ? C DA 10 D DT 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? B DA 10 N6 ? ? ? 1_555 C DT 3 O4 ? ? C DA 10 D DT 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? B DG 11 N1 ? ? ? 1_555 C DC 2 N3 ? ? C DG 11 D DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? B DG 11 N2 ? ? ? 1_555 C DC 2 O2 ? ? C DG 11 D DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? B DG 11 O6 ? ? ? 1_555 C DC 2 N4 ? ? C DG 11 D DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? B DC 12 N3 ? ? ? 1_555 C DG 1 N1 ? ? C DC 12 D DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? B DC 12 N4 ? ? ? 1_555 C DG 1 O6 ? ? C DC 12 D DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? B DC 12 O2 ? ? ? 1_555 C DG 1 N2 ? ? C DC 12 D DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id LYS _struct_mon_prot_cis.label_seq_id 12 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id LYS _struct_mon_prot_cis.auth_seq_id 437 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 TRP _struct_mon_prot_cis.pdbx_label_seq_id_2 13 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 TRP _struct_mon_prot_cis.pdbx_auth_seq_id_2 438 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -6.56 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id C _struct_site.pdbx_auth_comp_id EDO _struct_site.pdbx_auth_seq_id 101 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 4 _struct_site.details 'BINDING SITE FOR RESIDUE EDO C 101' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 ARG A 43 ? ARG A 468 . ? 1_555 ? 2 AC1 4 DC B 5 ? DC C 5 . ? 1_555 ? 3 AC1 4 DG B 6 ? DG C 6 . ? 1_555 ? 4 AC1 4 DG C 6 ? DG D 6 . ? 1_555 ? # _database_PDB_matrix.entry_id 4E9F _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4E9F _atom_sites.fract_transf_matrix[1][1] 0.024349 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.017908 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010347 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 426 ? ? ? A . n A 1 2 LEU 2 427 ? ? ? A . n A 1 3 SER 3 428 ? ? ? A . n A 1 4 PRO 4 429 ? ? ? A . n A 1 5 PRO 5 430 ? ? ? A . n A 1 6 ARG 6 431 ? ? ? A . n A 1 7 ARG 7 432 ? ? ? A . n A 1 8 LYS 8 433 ? ? ? A . n A 1 9 ALA 9 434 ? ? ? A . n A 1 10 PHE 10 435 ? ? ? A . n A 1 11 LYS 11 436 ? ? ? A . n A 1 12 LYS 12 437 437 LYS LYS A . n A 1 13 TRP 13 438 438 TRP TRP A . n A 1 14 THR 14 439 439 THR THR A . n A 1 15 PRO 15 440 440 PRO PRO A . n A 1 16 PRO 16 441 441 PRO PRO A . n A 1 17 ARG 17 442 442 ARG ARG A . n A 1 18 SER 18 443 443 SER SER A . n A 1 19 PRO 19 444 444 PRO PRO A . n A 1 20 PHE 20 445 445 PHE PHE A . n A 1 21 ASN 21 446 446 ASN ASN A . n A 1 22 LEU 22 447 447 LEU LEU A . n A 1 23 VAL 23 448 448 VAL VAL A . n A 1 24 GLN 24 449 449 GLN GLN A . n A 1 25 GLU 25 450 450 GLU GLU A . n A 1 26 THR 26 451 451 THR THR A . n A 1 27 LEU 27 452 452 LEU LEU A . n A 1 28 PHE 28 453 453 PHE PHE A . n A 1 29 HIS 29 454 454 HIS HIS A . n A 1 30 ASP 30 455 455 ASP ASP A . n A 1 31 PRO 31 456 456 PRO PRO A . n A 1 32 TRP 32 457 457 TRP TRP A . n A 1 33 LYS 33 458 458 LYS LYS A . n A 1 34 LEU 34 459 459 LEU LEU A . n A 1 35 LEU 35 460 460 LEU LEU A . n A 1 36 ILE 36 461 461 ILE ILE A . n A 1 37 ALA 37 462 462 ALA ALA A . n A 1 38 THR 38 463 463 THR THR A . n A 1 39 ILE 39 464 464 ILE ILE A . n A 1 40 PHE 40 465 465 PHE PHE A . n A 1 41 LEU 41 466 466 LEU LEU A . n A 1 42 ASN 42 467 467 ASN ASN A . n A 1 43 ARG 43 468 468 ARG ARG A . n A 1 44 THR 44 469 469 THR THR A . n A 1 45 SER 45 470 470 SER SER A . n A 1 46 GLY 46 471 471 GLY GLY A . n A 1 47 LYS 47 472 472 LYS LYS A . n A 1 48 MET 48 473 473 MET MET A . n A 1 49 ALA 49 474 474 ALA ALA A . n A 1 50 ILE 50 475 475 ILE ILE A . n A 1 51 PRO 51 476 476 PRO PRO A . n A 1 52 VAL 52 477 477 VAL VAL A . n A 1 53 LEU 53 478 478 LEU LEU A . n A 1 54 TRP 54 479 479 TRP TRP A . n A 1 55 LYS 55 480 480 LYS LYS A . n A 1 56 PHE 56 481 481 PHE PHE A . n A 1 57 LEU 57 482 482 LEU LEU A . n A 1 58 GLU 58 483 483 GLU GLU A . n A 1 59 LYS 59 484 484 LYS LYS A . n A 1 60 TYR 60 485 485 TYR TYR A . n A 1 61 PRO 61 486 486 PRO PRO A . n A 1 62 SER 62 487 487 SER SER A . n A 1 63 ALA 63 488 488 ALA ALA A . n A 1 64 GLU 64 489 489 GLU GLU A . n A 1 65 VAL 65 490 490 VAL VAL A . n A 1 66 ALA 66 491 491 ALA ALA A . n A 1 67 ARG 67 492 492 ARG ARG A . n A 1 68 THR 68 493 493 THR THR A . n A 1 69 ALA 69 494 494 ALA ALA A . n A 1 70 ASP 70 495 495 ASP ASP A . n A 1 71 TRP 71 496 496 TRP TRP A . n A 1 72 ARG 72 497 497 ARG ARG A . n A 1 73 ASP 73 498 498 ASP ASP A . n A 1 74 VAL 74 499 499 VAL VAL A . n A 1 75 SER 75 500 500 SER SER A . n A 1 76 GLU 76 501 501 GLU GLU A . n A 1 77 LEU 77 502 502 LEU LEU A . n A 1 78 LEU 78 503 503 LEU LEU A . n A 1 79 LYS 79 504 504 LYS LYS A . n A 1 80 PRO 80 505 505 PRO PRO A . n A 1 81 LEU 81 506 506 LEU LEU A . n A 1 82 GLY 82 507 507 GLY GLY A . n A 1 83 LEU 83 508 508 LEU LEU A . n A 1 84 TYR 84 509 509 TYR TYR A . n A 1 85 ASP 85 510 510 ASP ASP A . n A 1 86 LEU 86 511 511 LEU LEU A . n A 1 87 ARG 87 512 512 ARG ARG A . n A 1 88 ALA 88 513 513 ALA ALA A . n A 1 89 LYS 89 514 514 LYS LYS A . n A 1 90 THR 90 515 515 THR THR A . n A 1 91 ILE 91 516 516 ILE ILE A . n A 1 92 VAL 92 517 517 VAL VAL A . n A 1 93 LYS 93 518 518 LYS LYS A . n A 1 94 PHE 94 519 519 PHE PHE A . n A 1 95 SER 95 520 520 SER SER A . n A 1 96 ASP 96 521 521 ASP ASP A . n A 1 97 GLU 97 522 522 GLU GLU A . n A 1 98 TYR 98 523 523 TYR TYR A . n A 1 99 LEU 99 524 524 LEU LEU A . n A 1 100 THR 100 525 525 THR THR A . n A 1 101 LYS 101 526 526 LYS LYS A . n A 1 102 GLN 102 527 527 GLN GLN A . n A 1 103 TRP 103 528 528 TRP TRP A . n A 1 104 LYS 104 529 529 LYS LYS A . n A 1 105 TYR 105 530 530 TYR TYR A . n A 1 106 PRO 106 531 531 PRO PRO A . n A 1 107 ILE 107 532 532 ILE ILE A . n A 1 108 GLU 108 533 533 GLU GLU A . n A 1 109 LEU 109 534 534 LEU LEU A . n A 1 110 HIS 110 535 535 HIS HIS A . n A 1 111 GLY 111 536 536 GLY GLY A . n A 1 112 ILE 112 537 537 ILE ILE A . n A 1 113 GLY 113 538 538 GLY GLY A . n A 1 114 LYS 114 539 539 LYS LYS A . n A 1 115 TYR 115 540 540 TYR TYR A . n A 1 116 GLY 116 541 541 GLY GLY A . n A 1 117 ASN 117 542 542 ASN ASN A . n A 1 118 ASP 118 543 543 ASP ASP A . n A 1 119 SER 119 544 544 SER SER A . n A 1 120 TYR 120 545 545 TYR TYR A . n A 1 121 ARG 121 546 546 ARG ARG A . n A 1 122 ILE 122 547 547 ILE ILE A . n A 1 123 PHE 123 548 548 PHE PHE A . n A 1 124 CYS 124 549 549 CYS CYS A . n A 1 125 VAL 125 550 550 VAL VAL A . n A 1 126 ASN 126 551 551 ASN ASN A . n A 1 127 GLU 127 552 552 GLU GLU A . n A 1 128 TRP 128 553 553 TRP TRP A . n A 1 129 LYS 129 554 554 LYS LYS A . n A 1 130 GLN 130 555 555 GLN GLN A . n A 1 131 VAL 131 556 556 VAL VAL A . n A 1 132 HIS 132 557 557 HIS HIS A . n A 1 133 PRO 133 558 558 PRO PRO A . n A 1 134 GLU 134 559 559 GLU GLU A . n A 1 135 ASP 135 560 560 ASP ASP A . n A 1 136 HIS 136 561 561 HIS HIS A . n A 1 137 LYS 137 562 562 LYS LYS A . n A 1 138 LEU 138 563 563 LEU LEU A . n A 1 139 ASN 139 564 564 ASN ASN A . n A 1 140 LYS 140 565 565 LYS LYS A . n A 1 141 TYR 141 566 566 TYR TYR A . n A 1 142 HIS 142 567 567 HIS HIS A . n A 1 143 ASP 143 568 568 ASP ASP A . n A 1 144 TRP 144 569 569 TRP TRP A . n A 1 145 LEU 145 570 570 LEU LEU A . n A 1 146 TRP 146 571 571 TRP TRP A . n A 1 147 GLU 147 572 572 GLU GLU A . n A 1 148 ASN 148 573 573 ASN ASN A . n A 1 149 HIS 149 574 574 HIS HIS A . n A 1 150 GLU 150 575 ? ? ? A . n A 1 151 LYS 151 576 ? ? ? A . n A 1 152 LEU 152 577 ? ? ? A . n A 1 153 SER 153 578 ? ? ? A . n A 1 154 LEU 154 579 ? ? ? A . n A 1 155 SER 155 580 ? ? ? A . n A 1 156 HIS 156 581 ? ? ? A . n A 1 157 HIS 157 582 ? ? ? A . n A 1 158 HIS 158 583 ? ? ? A . n A 1 159 HIS 159 584 ? ? ? A . n A 1 160 HIS 160 585 ? ? ? A . n A 1 161 HIS 161 586 ? ? ? A . n B 2 1 DC 1 1 1 DC C C . n B 2 2 DC 2 2 2 DC C C . n B 2 3 DA 3 3 3 DA A C . n B 2 4 DG 4 4 4 DG G C . n B 2 5 DC 5 5 5 DC C C . n B 2 6 DG 6 6 6 DG G C . n B 2 7 3DR 7 7 7 3DR 3DR C . n B 2 8 DG 8 8 8 DG G C . n B 2 9 DC 9 9 9 DC C C . n B 2 10 DA 10 10 10 DA A C . n B 2 11 DG 11 11 11 DG G C . n B 2 12 DC 12 12 12 DC C C . n C 3 1 DG 1 1 1 DG G D . n C 3 2 DC 2 2 2 DC C D . n C 3 3 DT 3 3 3 DT T D . n C 3 4 DG 4 4 4 DG G D . n C 3 5 DC 5 5 5 DC C D . n C 3 6 DG 6 6 6 DG G D . n C 3 7 DC 7 7 7 DC C D . n C 3 8 DG 8 8 8 DG G D . n C 3 9 DC 9 9 9 DC C D . n C 3 10 DT 10 10 10 DT T D . n C 3 11 DG 11 11 11 DG G D . n C 3 12 DG 12 12 12 DG G D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 EDO 1 101 1003 EDO EGL C . E 5 HOH 1 601 1 HOH HOH A . E 5 HOH 2 602 2 HOH HOH A . E 5 HOH 3 603 3 HOH HOH A . E 5 HOH 4 604 4 HOH HOH A . E 5 HOH 5 605 5 HOH HOH A . E 5 HOH 6 606 6 HOH HOH A . E 5 HOH 7 607 7 HOH HOH A . E 5 HOH 8 608 8 HOH HOH A . E 5 HOH 9 609 10 HOH HOH A . E 5 HOH 10 610 11 HOH HOH A . E 5 HOH 11 611 12 HOH HOH A . E 5 HOH 12 612 13 HOH HOH A . E 5 HOH 13 613 15 HOH HOH A . E 5 HOH 14 614 16 HOH HOH A . E 5 HOH 15 615 17 HOH HOH A . E 5 HOH 16 616 18 HOH HOH A . E 5 HOH 17 617 19 HOH HOH A . E 5 HOH 18 618 20 HOH HOH A . E 5 HOH 19 619 21 HOH HOH A . E 5 HOH 20 620 22 HOH HOH A . E 5 HOH 21 621 23 HOH HOH A . E 5 HOH 22 622 24 HOH HOH A . E 5 HOH 23 623 25 HOH HOH A . E 5 HOH 24 624 26 HOH HOH A . E 5 HOH 25 625 27 HOH HOH A . E 5 HOH 26 626 28 HOH HOH A . E 5 HOH 27 627 29 HOH HOH A . E 5 HOH 28 628 30 HOH HOH A . E 5 HOH 29 629 31 HOH HOH A . E 5 HOH 30 630 32 HOH HOH A . E 5 HOH 31 631 35 HOH HOH A . E 5 HOH 32 632 36 HOH HOH A . E 5 HOH 33 633 37 HOH HOH A . E 5 HOH 34 634 39 HOH HOH A . E 5 HOH 35 635 40 HOH HOH A . E 5 HOH 36 636 41 HOH HOH A . E 5 HOH 37 637 42 HOH HOH A . E 5 HOH 38 638 43 HOH HOH A . E 5 HOH 39 639 44 HOH HOH A . E 5 HOH 40 640 45 HOH HOH A . E 5 HOH 41 641 46 HOH HOH A . E 5 HOH 42 642 53 HOH HOH A . E 5 HOH 43 643 54 HOH HOH A . E 5 HOH 44 644 56 HOH HOH A . E 5 HOH 45 645 57 HOH HOH A . E 5 HOH 46 646 58 HOH HOH A . E 5 HOH 47 647 59 HOH HOH A . E 5 HOH 48 648 62 HOH HOH A . E 5 HOH 49 649 64 HOH HOH A . E 5 HOH 50 650 65 HOH HOH A . E 5 HOH 51 651 66 HOH HOH A . E 5 HOH 52 652 71 HOH HOH A . E 5 HOH 53 653 80 HOH HOH A . E 5 HOH 54 654 81 HOH HOH A . E 5 HOH 55 655 82 HOH HOH A . E 5 HOH 56 656 85 HOH HOH A . E 5 HOH 57 657 87 HOH HOH A . E 5 HOH 58 658 89 HOH HOH A . E 5 HOH 59 659 90 HOH HOH A . E 5 HOH 60 660 93 HOH HOH A . E 5 HOH 61 661 97 HOH HOH A . E 5 HOH 62 662 98 HOH HOH A . E 5 HOH 63 663 103 HOH HOH A . E 5 HOH 64 664 105 HOH HOH A . F 5 HOH 1 201 9 HOH HOH C . F 5 HOH 2 202 38 HOH HOH C . F 5 HOH 3 203 47 HOH HOH C . F 5 HOH 4 204 48 HOH HOH C . F 5 HOH 5 205 67 HOH HOH C . F 5 HOH 6 206 88 HOH HOH C . F 5 HOH 7 207 91 HOH HOH C . F 5 HOH 8 208 92 HOH HOH C . F 5 HOH 9 209 107 HOH HOH C . G 5 HOH 1 101 14 HOH HOH D . G 5 HOH 2 102 68 HOH HOH D . G 5 HOH 3 103 69 HOH HOH D . G 5 HOH 4 104 72 HOH HOH D . G 5 HOH 5 105 77 HOH HOH D . G 5 HOH 6 106 78 HOH HOH D . G 5 HOH 7 107 79 HOH HOH D . G 5 HOH 8 108 86 HOH HOH D . G 5 HOH 9 109 95 HOH HOH D . G 5 HOH 10 110 99 HOH HOH D . G 5 HOH 11 111 104 HOH HOH D . G 5 HOH 12 112 106 HOH HOH D . G 5 HOH 13 113 108 HOH HOH D . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3820 ? 1 MORE -11 ? 1 'SSA (A^2)' 10240 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-08-08 2 'Structure model' 1 1 2012-11-07 3 'Structure model' 1 2 2016-12-28 4 'Structure model' 1 3 2023-09-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Structure summary' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_initial_refinement_model 5 4 'Structure model' struct_conn 6 4 'Structure model' struct_ref_seq_dif 7 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 4 'Structure model' '_struct_ref_seq_dif.details' 5 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 6 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 7 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal DNA 'data collection' . ? 1 PHASER phasing . ? 2 BUSTER refinement 2.10.0 ? 3 XDS 'data reduction' . ? 4 XDS 'data scaling' . ? 5 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" C DC 1 ? ? "C1'" C DC 1 ? ? N1 C DC 1 ? ? 112.94 108.30 4.64 0.30 N 2 1 N1 C DC 1 ? ? C2 C DC 1 ? ? O2 C DC 1 ? ? 123.78 118.90 4.88 0.60 N 3 1 N3 C DC 1 ? ? C2 C DC 1 ? ? O2 C DC 1 ? ? 117.52 121.90 -4.38 0.70 N 4 1 C2 C DC 1 ? ? N1 C DC 1 ? ? "C1'" C DC 1 ? ? 126.32 118.80 7.52 1.10 N 5 1 "C3'" C DG 4 ? ? "O3'" C DG 4 ? ? P C DC 5 ? ? 127.45 119.70 7.75 1.20 Y 6 1 "O4'" C DC 5 ? ? "C1'" C DC 5 ? ? N1 C DC 5 ? ? 110.97 108.30 2.67 0.30 N 7 1 "C3'" C DG 6 ? ? "O3'" C DG 6 ? ? P C 3DR 7 ? ? 126.90 119.70 7.20 1.20 Y 8 1 "O4'" C DG 11 ? ? "C1'" C DG 11 ? ? N9 C DG 11 ? ? 110.83 108.30 2.53 0.30 N 9 1 "C3'" C DG 11 ? ? "O3'" C DG 11 ? ? P C DC 12 ? ? 129.05 119.70 9.35 1.20 Y 10 1 "O4'" C DC 12 ? ? "C1'" C DC 12 ? ? N1 C DC 12 ? ? 110.32 108.30 2.02 0.30 N 11 1 "C3'" D DG 1 ? ? "O3'" D DG 1 ? ? P D DC 2 ? ? 131.25 119.70 11.55 1.20 Y 12 1 "C3'" D DC 2 ? ? "O3'" D DC 2 ? ? P D DT 3 ? ? 129.56 119.70 9.86 1.20 Y 13 1 "O4'" D DC 5 ? ? "C1'" D DC 5 ? ? N1 D DC 5 ? ? 111.85 108.30 3.55 0.30 N 14 1 "O4'" D DT 10 ? ? "C1'" D DT 10 ? ? N1 D DT 10 ? ? 110.72 108.30 2.42 0.30 N 15 1 "C3'" D DG 11 ? ? "O3'" D DG 11 ? ? P D DG 12 ? ? 127.76 119.70 8.06 1.20 Y 16 1 "O4'" D DG 12 ? ? "C1'" D DG 12 ? ? N9 D DG 12 ? ? 111.29 108.30 2.99 0.30 N # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 426 ? A MET 1 2 1 Y 1 A LEU 427 ? A LEU 2 3 1 Y 1 A SER 428 ? A SER 3 4 1 Y 1 A PRO 429 ? A PRO 4 5 1 Y 1 A PRO 430 ? A PRO 5 6 1 Y 1 A ARG 431 ? A ARG 6 7 1 Y 1 A ARG 432 ? A ARG 7 8 1 Y 1 A LYS 433 ? A LYS 8 9 1 Y 1 A ALA 434 ? A ALA 9 10 1 Y 1 A PHE 435 ? A PHE 10 11 1 Y 1 A LYS 436 ? A LYS 11 12 1 Y 1 A GLU 575 ? A GLU 150 13 1 Y 1 A LYS 576 ? A LYS 151 14 1 Y 1 A LEU 577 ? A LEU 152 15 1 Y 1 A SER 578 ? A SER 153 16 1 Y 1 A LEU 579 ? A LEU 154 17 1 Y 1 A SER 580 ? A SER 155 18 1 Y 1 A HIS 581 ? A HIS 156 19 1 Y 1 A HIS 582 ? A HIS 157 20 1 Y 1 A HIS 583 ? A HIS 158 21 1 Y 1 A HIS 584 ? A HIS 159 22 1 Y 1 A HIS 585 ? A HIS 160 23 1 Y 1 A HIS 586 ? A HIS 161 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 3DR "O5'" O N N 1 3DR P P N N 2 3DR OP1 O N N 3 3DR OP2 O N N 4 3DR OP3 O N N 5 3DR "C2'" C N N 6 3DR "C5'" C N N 7 3DR "C4'" C N R 8 3DR "O4'" O N N 9 3DR "C1'" C N N 10 3DR "C3'" C N S 11 3DR "O3'" O N N 12 3DR HOP2 H N N 13 3DR HOP3 H N N 14 3DR "H2'" H N N 15 3DR "H2''" H N N 16 3DR "H5'" H N N 17 3DR "H5''" H N N 18 3DR "H4'1" H N N 19 3DR "H1'1" H N N 20 3DR "H1'2" H N N 21 3DR "H3'" H N N 22 3DR "HO3'" H N N 23 ALA N N N N 24 ALA CA C N S 25 ALA C C N N 26 ALA O O N N 27 ALA CB C N N 28 ALA OXT O N N 29 ALA H H N N 30 ALA H2 H N N 31 ALA HA H N N 32 ALA HB1 H N N 33 ALA HB2 H N N 34 ALA HB3 H N N 35 ALA HXT H N N 36 ARG N N N N 37 ARG CA C N S 38 ARG C C N N 39 ARG O O N N 40 ARG CB C N N 41 ARG CG C N N 42 ARG CD C N N 43 ARG NE N N N 44 ARG CZ C N N 45 ARG NH1 N N N 46 ARG NH2 N N N 47 ARG OXT O N N 48 ARG H H N N 49 ARG H2 H N N 50 ARG HA H N N 51 ARG HB2 H N N 52 ARG HB3 H N N 53 ARG HG2 H N N 54 ARG HG3 H N N 55 ARG HD2 H N N 56 ARG HD3 H N N 57 ARG HE H N N 58 ARG HH11 H N N 59 ARG HH12 H N N 60 ARG HH21 H N N 61 ARG HH22 H N N 62 ARG HXT H N N 63 ASN N N N N 64 ASN CA C N S 65 ASN C C N N 66 ASN O O N N 67 ASN CB C N N 68 ASN CG C N N 69 ASN OD1 O N N 70 ASN ND2 N N N 71 ASN OXT O N N 72 ASN H H N N 73 ASN H2 H N N 74 ASN HA H N N 75 ASN HB2 H N N 76 ASN HB3 H N N 77 ASN HD21 H N N 78 ASN HD22 H N N 79 ASN HXT H N N 80 ASP N N N N 81 ASP CA C N S 82 ASP C C N N 83 ASP O O N N 84 ASP CB C N N 85 ASP CG C N N 86 ASP OD1 O N N 87 ASP OD2 O N N 88 ASP OXT O N N 89 ASP H H N N 90 ASP H2 H N N 91 ASP HA H N N 92 ASP HB2 H N N 93 ASP HB3 H N N 94 ASP HD2 H N N 95 ASP HXT H N N 96 CYS N N N N 97 CYS CA C N R 98 CYS C C N N 99 CYS O O N N 100 CYS CB C N N 101 CYS SG S N N 102 CYS OXT O N N 103 CYS H H N N 104 CYS H2 H N N 105 CYS HA H N N 106 CYS HB2 H N N 107 CYS HB3 H N N 108 CYS HG H N N 109 CYS HXT H N N 110 DA OP3 O N N 111 DA P P N N 112 DA OP1 O N N 113 DA OP2 O N N 114 DA "O5'" O N N 115 DA "C5'" C N N 116 DA "C4'" C N R 117 DA "O4'" O N N 118 DA "C3'" C N S 119 DA "O3'" O N N 120 DA "C2'" C N N 121 DA "C1'" C N R 122 DA N9 N Y N 123 DA C8 C Y N 124 DA N7 N Y N 125 DA C5 C Y N 126 DA C6 C Y N 127 DA N6 N N N 128 DA N1 N Y N 129 DA C2 C Y N 130 DA N3 N Y N 131 DA C4 C Y N 132 DA HOP3 H N N 133 DA HOP2 H N N 134 DA "H5'" H N N 135 DA "H5''" H N N 136 DA "H4'" H N N 137 DA "H3'" H N N 138 DA "HO3'" H N N 139 DA "H2'" H N N 140 DA "H2''" H N N 141 DA "H1'" H N N 142 DA H8 H N N 143 DA H61 H N N 144 DA H62 H N N 145 DA H2 H N N 146 DC OP3 O N N 147 DC P P N N 148 DC OP1 O N N 149 DC OP2 O N N 150 DC "O5'" O N N 151 DC "C5'" C N N 152 DC "C4'" C N R 153 DC "O4'" O N N 154 DC "C3'" C N S 155 DC "O3'" O N N 156 DC "C2'" C N N 157 DC "C1'" C N R 158 DC N1 N N N 159 DC C2 C N N 160 DC O2 O N N 161 DC N3 N N N 162 DC C4 C N N 163 DC N4 N N N 164 DC C5 C N N 165 DC C6 C N N 166 DC HOP3 H N N 167 DC HOP2 H N N 168 DC "H5'" H N N 169 DC "H5''" H N N 170 DC "H4'" H N N 171 DC "H3'" H N N 172 DC "HO3'" H N N 173 DC "H2'" H N N 174 DC "H2''" H N N 175 DC "H1'" H N N 176 DC H41 H N N 177 DC H42 H N N 178 DC H5 H N N 179 DC H6 H N N 180 DG OP3 O N N 181 DG P P N N 182 DG OP1 O N N 183 DG OP2 O N N 184 DG "O5'" O N N 185 DG "C5'" C N N 186 DG "C4'" C N R 187 DG "O4'" O N N 188 DG "C3'" C N S 189 DG "O3'" O N N 190 DG "C2'" C N N 191 DG "C1'" C N R 192 DG N9 N Y N 193 DG C8 C Y N 194 DG N7 N Y N 195 DG C5 C Y N 196 DG C6 C N N 197 DG O6 O N N 198 DG N1 N N N 199 DG C2 C N N 200 DG N2 N N N 201 DG N3 N N N 202 DG C4 C Y N 203 DG HOP3 H N N 204 DG HOP2 H N N 205 DG "H5'" H N N 206 DG "H5''" H N N 207 DG "H4'" H N N 208 DG "H3'" H N N 209 DG "HO3'" H N N 210 DG "H2'" H N N 211 DG "H2''" H N N 212 DG "H1'" H N N 213 DG H8 H N N 214 DG H1 H N N 215 DG H21 H N N 216 DG H22 H N N 217 DT OP3 O N N 218 DT P P N N 219 DT OP1 O N N 220 DT OP2 O N N 221 DT "O5'" O N N 222 DT "C5'" C N N 223 DT "C4'" C N R 224 DT "O4'" O N N 225 DT "C3'" C N S 226 DT "O3'" O N N 227 DT "C2'" C N N 228 DT "C1'" C N R 229 DT N1 N N N 230 DT C2 C N N 231 DT O2 O N N 232 DT N3 N N N 233 DT C4 C N N 234 DT O4 O N N 235 DT C5 C N N 236 DT C7 C N N 237 DT C6 C N N 238 DT HOP3 H N N 239 DT HOP2 H N N 240 DT "H5'" H N N 241 DT "H5''" H N N 242 DT "H4'" H N N 243 DT "H3'" H N N 244 DT "HO3'" H N N 245 DT "H2'" H N N 246 DT "H2''" H N N 247 DT "H1'" H N N 248 DT H3 H N N 249 DT H71 H N N 250 DT H72 H N N 251 DT H73 H N N 252 DT H6 H N N 253 EDO C1 C N N 254 EDO O1 O N N 255 EDO C2 C N N 256 EDO O2 O N N 257 EDO H11 H N N 258 EDO H12 H N N 259 EDO HO1 H N N 260 EDO H21 H N N 261 EDO H22 H N N 262 EDO HO2 H N N 263 GLN N N N N 264 GLN CA C N S 265 GLN C C N N 266 GLN O O N N 267 GLN CB C N N 268 GLN CG C N N 269 GLN CD C N N 270 GLN OE1 O N N 271 GLN NE2 N N N 272 GLN OXT O N N 273 GLN H H N N 274 GLN H2 H N N 275 GLN HA H N N 276 GLN HB2 H N N 277 GLN HB3 H N N 278 GLN HG2 H N N 279 GLN HG3 H N N 280 GLN HE21 H N N 281 GLN HE22 H N N 282 GLN HXT H N N 283 GLU N N N N 284 GLU CA C N S 285 GLU C C N N 286 GLU O O N N 287 GLU CB C N N 288 GLU CG C N N 289 GLU CD C N N 290 GLU OE1 O N N 291 GLU OE2 O N N 292 GLU OXT O N N 293 GLU H H N N 294 GLU H2 H N N 295 GLU HA H N N 296 GLU HB2 H N N 297 GLU HB3 H N N 298 GLU HG2 H N N 299 GLU HG3 H N N 300 GLU HE2 H N N 301 GLU HXT H N N 302 GLY N N N N 303 GLY CA C N N 304 GLY C C N N 305 GLY O O N N 306 GLY OXT O N N 307 GLY H H N N 308 GLY H2 H N N 309 GLY HA2 H N N 310 GLY HA3 H N N 311 GLY HXT H N N 312 HIS N N N N 313 HIS CA C N S 314 HIS C C N N 315 HIS O O N N 316 HIS CB C N N 317 HIS CG C Y N 318 HIS ND1 N Y N 319 HIS CD2 C Y N 320 HIS CE1 C Y N 321 HIS NE2 N Y N 322 HIS OXT O N N 323 HIS H H N N 324 HIS H2 H N N 325 HIS HA H N N 326 HIS HB2 H N N 327 HIS HB3 H N N 328 HIS HD1 H N N 329 HIS HD2 H N N 330 HIS HE1 H N N 331 HIS HE2 H N N 332 HIS HXT H N N 333 HOH O O N N 334 HOH H1 H N N 335 HOH H2 H N N 336 ILE N N N N 337 ILE CA C N S 338 ILE C C N N 339 ILE O O N N 340 ILE CB C N S 341 ILE CG1 C N N 342 ILE CG2 C N N 343 ILE CD1 C N N 344 ILE OXT O N N 345 ILE H H N N 346 ILE H2 H N N 347 ILE HA H N N 348 ILE HB H N N 349 ILE HG12 H N N 350 ILE HG13 H N N 351 ILE HG21 H N N 352 ILE HG22 H N N 353 ILE HG23 H N N 354 ILE HD11 H N N 355 ILE HD12 H N N 356 ILE HD13 H N N 357 ILE HXT H N N 358 LEU N N N N 359 LEU CA C N S 360 LEU C C N N 361 LEU O O N N 362 LEU CB C N N 363 LEU CG C N N 364 LEU CD1 C N N 365 LEU CD2 C N N 366 LEU OXT O N N 367 LEU H H N N 368 LEU H2 H N N 369 LEU HA H N N 370 LEU HB2 H N N 371 LEU HB3 H N N 372 LEU HG H N N 373 LEU HD11 H N N 374 LEU HD12 H N N 375 LEU HD13 H N N 376 LEU HD21 H N N 377 LEU HD22 H N N 378 LEU HD23 H N N 379 LEU HXT H N N 380 LYS N N N N 381 LYS CA C N S 382 LYS C C N N 383 LYS O O N N 384 LYS CB C N N 385 LYS CG C N N 386 LYS CD C N N 387 LYS CE C N N 388 LYS NZ N N N 389 LYS OXT O N N 390 LYS H H N N 391 LYS H2 H N N 392 LYS HA H N N 393 LYS HB2 H N N 394 LYS HB3 H N N 395 LYS HG2 H N N 396 LYS HG3 H N N 397 LYS HD2 H N N 398 LYS HD3 H N N 399 LYS HE2 H N N 400 LYS HE3 H N N 401 LYS HZ1 H N N 402 LYS HZ2 H N N 403 LYS HZ3 H N N 404 LYS HXT H N N 405 MET N N N N 406 MET CA C N S 407 MET C C N N 408 MET O O N N 409 MET CB C N N 410 MET CG C N N 411 MET SD S N N 412 MET CE C N N 413 MET OXT O N N 414 MET H H N N 415 MET H2 H N N 416 MET HA H N N 417 MET HB2 H N N 418 MET HB3 H N N 419 MET HG2 H N N 420 MET HG3 H N N 421 MET HE1 H N N 422 MET HE2 H N N 423 MET HE3 H N N 424 MET HXT H N N 425 PHE N N N N 426 PHE CA C N S 427 PHE C C N N 428 PHE O O N N 429 PHE CB C N N 430 PHE CG C Y N 431 PHE CD1 C Y N 432 PHE CD2 C Y N 433 PHE CE1 C Y N 434 PHE CE2 C Y N 435 PHE CZ C Y N 436 PHE OXT O N N 437 PHE H H N N 438 PHE H2 H N N 439 PHE HA H N N 440 PHE HB2 H N N 441 PHE HB3 H N N 442 PHE HD1 H N N 443 PHE HD2 H N N 444 PHE HE1 H N N 445 PHE HE2 H N N 446 PHE HZ H N N 447 PHE HXT H N N 448 PRO N N N N 449 PRO CA C N S 450 PRO C C N N 451 PRO O O N N 452 PRO CB C N N 453 PRO CG C N N 454 PRO CD C N N 455 PRO OXT O N N 456 PRO H H N N 457 PRO HA H N N 458 PRO HB2 H N N 459 PRO HB3 H N N 460 PRO HG2 H N N 461 PRO HG3 H N N 462 PRO HD2 H N N 463 PRO HD3 H N N 464 PRO HXT H N N 465 SER N N N N 466 SER CA C N S 467 SER C C N N 468 SER O O N N 469 SER CB C N N 470 SER OG O N N 471 SER OXT O N N 472 SER H H N N 473 SER H2 H N N 474 SER HA H N N 475 SER HB2 H N N 476 SER HB3 H N N 477 SER HG H N N 478 SER HXT H N N 479 THR N N N N 480 THR CA C N S 481 THR C C N N 482 THR O O N N 483 THR CB C N R 484 THR OG1 O N N 485 THR CG2 C N N 486 THR OXT O N N 487 THR H H N N 488 THR H2 H N N 489 THR HA H N N 490 THR HB H N N 491 THR HG1 H N N 492 THR HG21 H N N 493 THR HG22 H N N 494 THR HG23 H N N 495 THR HXT H N N 496 TRP N N N N 497 TRP CA C N S 498 TRP C C N N 499 TRP O O N N 500 TRP CB C N N 501 TRP CG C Y N 502 TRP CD1 C Y N 503 TRP CD2 C Y N 504 TRP NE1 N Y N 505 TRP CE2 C Y N 506 TRP CE3 C Y N 507 TRP CZ2 C Y N 508 TRP CZ3 C Y N 509 TRP CH2 C Y N 510 TRP OXT O N N 511 TRP H H N N 512 TRP H2 H N N 513 TRP HA H N N 514 TRP HB2 H N N 515 TRP HB3 H N N 516 TRP HD1 H N N 517 TRP HE1 H N N 518 TRP HE3 H N N 519 TRP HZ2 H N N 520 TRP HZ3 H N N 521 TRP HH2 H N N 522 TRP HXT H N N 523 TYR N N N N 524 TYR CA C N S 525 TYR C C N N 526 TYR O O N N 527 TYR CB C N N 528 TYR CG C Y N 529 TYR CD1 C Y N 530 TYR CD2 C Y N 531 TYR CE1 C Y N 532 TYR CE2 C Y N 533 TYR CZ C Y N 534 TYR OH O N N 535 TYR OXT O N N 536 TYR H H N N 537 TYR H2 H N N 538 TYR HA H N N 539 TYR HB2 H N N 540 TYR HB3 H N N 541 TYR HD1 H N N 542 TYR HD2 H N N 543 TYR HE1 H N N 544 TYR HE2 H N N 545 TYR HH H N N 546 TYR HXT H N N 547 VAL N N N N 548 VAL CA C N S 549 VAL C C N N 550 VAL O O N N 551 VAL CB C N N 552 VAL CG1 C N N 553 VAL CG2 C N N 554 VAL OXT O N N 555 VAL H H N N 556 VAL H2 H N N 557 VAL HA H N N 558 VAL HB H N N 559 VAL HG11 H N N 560 VAL HG12 H N N 561 VAL HG13 H N N 562 VAL HG21 H N N 563 VAL HG22 H N N 564 VAL HG23 H N N 565 VAL HXT H N N 566 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 3DR "O5'" P sing N N 1 3DR "O5'" "C5'" sing N N 2 3DR P OP1 doub N N 3 3DR P OP2 sing N N 4 3DR P OP3 sing N N 5 3DR OP2 HOP2 sing N N 6 3DR OP3 HOP3 sing N N 7 3DR "C2'" "C1'" sing N N 8 3DR "C2'" "C3'" sing N N 9 3DR "C2'" "H2'" sing N N 10 3DR "C2'" "H2''" sing N N 11 3DR "C5'" "C4'" sing N N 12 3DR "C5'" "H5'" sing N N 13 3DR "C5'" "H5''" sing N N 14 3DR "C4'" "O4'" sing N N 15 3DR "C4'" "C3'" sing N N 16 3DR "C4'" "H4'1" sing N N 17 3DR "O4'" "C1'" sing N N 18 3DR "C1'" "H1'1" sing N N 19 3DR "C1'" "H1'2" sing N N 20 3DR "C3'" "O3'" sing N N 21 3DR "C3'" "H3'" sing N N 22 3DR "O3'" "HO3'" sing N N 23 ALA N CA sing N N 24 ALA N H sing N N 25 ALA N H2 sing N N 26 ALA CA C sing N N 27 ALA CA CB sing N N 28 ALA CA HA sing N N 29 ALA C O doub N N 30 ALA C OXT sing N N 31 ALA CB HB1 sing N N 32 ALA CB HB2 sing N N 33 ALA CB HB3 sing N N 34 ALA OXT HXT sing N N 35 ARG N CA sing N N 36 ARG N H sing N N 37 ARG N H2 sing N N 38 ARG CA C sing N N 39 ARG CA CB sing N N 40 ARG CA HA sing N N 41 ARG C O doub N N 42 ARG C OXT sing N N 43 ARG CB CG sing N N 44 ARG CB HB2 sing N N 45 ARG CB HB3 sing N N 46 ARG CG CD sing N N 47 ARG CG HG2 sing N N 48 ARG CG HG3 sing N N 49 ARG CD NE sing N N 50 ARG CD HD2 sing N N 51 ARG CD HD3 sing N N 52 ARG NE CZ sing N N 53 ARG NE HE sing N N 54 ARG CZ NH1 sing N N 55 ARG CZ NH2 doub N N 56 ARG NH1 HH11 sing N N 57 ARG NH1 HH12 sing N N 58 ARG NH2 HH21 sing N N 59 ARG NH2 HH22 sing N N 60 ARG OXT HXT sing N N 61 ASN N CA sing N N 62 ASN N H sing N N 63 ASN N H2 sing N N 64 ASN CA C sing N N 65 ASN CA CB sing N N 66 ASN CA HA sing N N 67 ASN C O doub N N 68 ASN C OXT sing N N 69 ASN CB CG sing N N 70 ASN CB HB2 sing N N 71 ASN CB HB3 sing N N 72 ASN CG OD1 doub N N 73 ASN CG ND2 sing N N 74 ASN ND2 HD21 sing N N 75 ASN ND2 HD22 sing N N 76 ASN OXT HXT sing N N 77 ASP N CA sing N N 78 ASP N H sing N N 79 ASP N H2 sing N N 80 ASP CA C sing N N 81 ASP CA CB sing N N 82 ASP CA HA sing N N 83 ASP C O doub N N 84 ASP C OXT sing N N 85 ASP CB CG sing N N 86 ASP CB HB2 sing N N 87 ASP CB HB3 sing N N 88 ASP CG OD1 doub N N 89 ASP CG OD2 sing N N 90 ASP OD2 HD2 sing N N 91 ASP OXT HXT sing N N 92 CYS N CA sing N N 93 CYS N H sing N N 94 CYS N H2 sing N N 95 CYS CA C sing N N 96 CYS CA CB sing N N 97 CYS CA HA sing N N 98 CYS C O doub N N 99 CYS C OXT sing N N 100 CYS CB SG sing N N 101 CYS CB HB2 sing N N 102 CYS CB HB3 sing N N 103 CYS SG HG sing N N 104 CYS OXT HXT sing N N 105 DA OP3 P sing N N 106 DA OP3 HOP3 sing N N 107 DA P OP1 doub N N 108 DA P OP2 sing N N 109 DA P "O5'" sing N N 110 DA OP2 HOP2 sing N N 111 DA "O5'" "C5'" sing N N 112 DA "C5'" "C4'" sing N N 113 DA "C5'" "H5'" sing N N 114 DA "C5'" "H5''" sing N N 115 DA "C4'" "O4'" sing N N 116 DA "C4'" "C3'" sing N N 117 DA "C4'" "H4'" sing N N 118 DA "O4'" "C1'" sing N N 119 DA "C3'" "O3'" sing N N 120 DA "C3'" "C2'" sing N N 121 DA "C3'" "H3'" sing N N 122 DA "O3'" "HO3'" sing N N 123 DA "C2'" "C1'" sing N N 124 DA "C2'" "H2'" sing N N 125 DA "C2'" "H2''" sing N N 126 DA "C1'" N9 sing N N 127 DA "C1'" "H1'" sing N N 128 DA N9 C8 sing Y N 129 DA N9 C4 sing Y N 130 DA C8 N7 doub Y N 131 DA C8 H8 sing N N 132 DA N7 C5 sing Y N 133 DA C5 C6 sing Y N 134 DA C5 C4 doub Y N 135 DA C6 N6 sing N N 136 DA C6 N1 doub Y N 137 DA N6 H61 sing N N 138 DA N6 H62 sing N N 139 DA N1 C2 sing Y N 140 DA C2 N3 doub Y N 141 DA C2 H2 sing N N 142 DA N3 C4 sing Y N 143 DC OP3 P sing N N 144 DC OP3 HOP3 sing N N 145 DC P OP1 doub N N 146 DC P OP2 sing N N 147 DC P "O5'" sing N N 148 DC OP2 HOP2 sing N N 149 DC "O5'" "C5'" sing N N 150 DC "C5'" "C4'" sing N N 151 DC "C5'" "H5'" sing N N 152 DC "C5'" "H5''" sing N N 153 DC "C4'" "O4'" sing N N 154 DC "C4'" "C3'" sing N N 155 DC "C4'" "H4'" sing N N 156 DC "O4'" "C1'" sing N N 157 DC "C3'" "O3'" sing N N 158 DC "C3'" "C2'" sing N N 159 DC "C3'" "H3'" sing N N 160 DC "O3'" "HO3'" sing N N 161 DC "C2'" "C1'" sing N N 162 DC "C2'" "H2'" sing N N 163 DC "C2'" "H2''" sing N N 164 DC "C1'" N1 sing N N 165 DC "C1'" "H1'" sing N N 166 DC N1 C2 sing N N 167 DC N1 C6 sing N N 168 DC C2 O2 doub N N 169 DC C2 N3 sing N N 170 DC N3 C4 doub N N 171 DC C4 N4 sing N N 172 DC C4 C5 sing N N 173 DC N4 H41 sing N N 174 DC N4 H42 sing N N 175 DC C5 C6 doub N N 176 DC C5 H5 sing N N 177 DC C6 H6 sing N N 178 DG OP3 P sing N N 179 DG OP3 HOP3 sing N N 180 DG P OP1 doub N N 181 DG P OP2 sing N N 182 DG P "O5'" sing N N 183 DG OP2 HOP2 sing N N 184 DG "O5'" "C5'" sing N N 185 DG "C5'" "C4'" sing N N 186 DG "C5'" "H5'" sing N N 187 DG "C5'" "H5''" sing N N 188 DG "C4'" "O4'" sing N N 189 DG "C4'" "C3'" sing N N 190 DG "C4'" "H4'" sing N N 191 DG "O4'" "C1'" sing N N 192 DG "C3'" "O3'" sing N N 193 DG "C3'" "C2'" sing N N 194 DG "C3'" "H3'" sing N N 195 DG "O3'" "HO3'" sing N N 196 DG "C2'" "C1'" sing N N 197 DG "C2'" "H2'" sing N N 198 DG "C2'" "H2''" sing N N 199 DG "C1'" N9 sing N N 200 DG "C1'" "H1'" sing N N 201 DG N9 C8 sing Y N 202 DG N9 C4 sing Y N 203 DG C8 N7 doub Y N 204 DG C8 H8 sing N N 205 DG N7 C5 sing Y N 206 DG C5 C6 sing N N 207 DG C5 C4 doub Y N 208 DG C6 O6 doub N N 209 DG C6 N1 sing N N 210 DG N1 C2 sing N N 211 DG N1 H1 sing N N 212 DG C2 N2 sing N N 213 DG C2 N3 doub N N 214 DG N2 H21 sing N N 215 DG N2 H22 sing N N 216 DG N3 C4 sing N N 217 DT OP3 P sing N N 218 DT OP3 HOP3 sing N N 219 DT P OP1 doub N N 220 DT P OP2 sing N N 221 DT P "O5'" sing N N 222 DT OP2 HOP2 sing N N 223 DT "O5'" "C5'" sing N N 224 DT "C5'" "C4'" sing N N 225 DT "C5'" "H5'" sing N N 226 DT "C5'" "H5''" sing N N 227 DT "C4'" "O4'" sing N N 228 DT "C4'" "C3'" sing N N 229 DT "C4'" "H4'" sing N N 230 DT "O4'" "C1'" sing N N 231 DT "C3'" "O3'" sing N N 232 DT "C3'" "C2'" sing N N 233 DT "C3'" "H3'" sing N N 234 DT "O3'" "HO3'" sing N N 235 DT "C2'" "C1'" sing N N 236 DT "C2'" "H2'" sing N N 237 DT "C2'" "H2''" sing N N 238 DT "C1'" N1 sing N N 239 DT "C1'" "H1'" sing N N 240 DT N1 C2 sing N N 241 DT N1 C6 sing N N 242 DT C2 O2 doub N N 243 DT C2 N3 sing N N 244 DT N3 C4 sing N N 245 DT N3 H3 sing N N 246 DT C4 O4 doub N N 247 DT C4 C5 sing N N 248 DT C5 C7 sing N N 249 DT C5 C6 doub N N 250 DT C7 H71 sing N N 251 DT C7 H72 sing N N 252 DT C7 H73 sing N N 253 DT C6 H6 sing N N 254 EDO C1 O1 sing N N 255 EDO C1 C2 sing N N 256 EDO C1 H11 sing N N 257 EDO C1 H12 sing N N 258 EDO O1 HO1 sing N N 259 EDO C2 O2 sing N N 260 EDO C2 H21 sing N N 261 EDO C2 H22 sing N N 262 EDO O2 HO2 sing N N 263 GLN N CA sing N N 264 GLN N H sing N N 265 GLN N H2 sing N N 266 GLN CA C sing N N 267 GLN CA CB sing N N 268 GLN CA HA sing N N 269 GLN C O doub N N 270 GLN C OXT sing N N 271 GLN CB CG sing N N 272 GLN CB HB2 sing N N 273 GLN CB HB3 sing N N 274 GLN CG CD sing N N 275 GLN CG HG2 sing N N 276 GLN CG HG3 sing N N 277 GLN CD OE1 doub N N 278 GLN CD NE2 sing N N 279 GLN NE2 HE21 sing N N 280 GLN NE2 HE22 sing N N 281 GLN OXT HXT sing N N 282 GLU N CA sing N N 283 GLU N H sing N N 284 GLU N H2 sing N N 285 GLU CA C sing N N 286 GLU CA CB sing N N 287 GLU CA HA sing N N 288 GLU C O doub N N 289 GLU C OXT sing N N 290 GLU CB CG sing N N 291 GLU CB HB2 sing N N 292 GLU CB HB3 sing N N 293 GLU CG CD sing N N 294 GLU CG HG2 sing N N 295 GLU CG HG3 sing N N 296 GLU CD OE1 doub N N 297 GLU CD OE2 sing N N 298 GLU OE2 HE2 sing N N 299 GLU OXT HXT sing N N 300 GLY N CA sing N N 301 GLY N H sing N N 302 GLY N H2 sing N N 303 GLY CA C sing N N 304 GLY CA HA2 sing N N 305 GLY CA HA3 sing N N 306 GLY C O doub N N 307 GLY C OXT sing N N 308 GLY OXT HXT sing N N 309 HIS N CA sing N N 310 HIS N H sing N N 311 HIS N H2 sing N N 312 HIS CA C sing N N 313 HIS CA CB sing N N 314 HIS CA HA sing N N 315 HIS C O doub N N 316 HIS C OXT sing N N 317 HIS CB CG sing N N 318 HIS CB HB2 sing N N 319 HIS CB HB3 sing N N 320 HIS CG ND1 sing Y N 321 HIS CG CD2 doub Y N 322 HIS ND1 CE1 doub Y N 323 HIS ND1 HD1 sing N N 324 HIS CD2 NE2 sing Y N 325 HIS CD2 HD2 sing N N 326 HIS CE1 NE2 sing Y N 327 HIS CE1 HE1 sing N N 328 HIS NE2 HE2 sing N N 329 HIS OXT HXT sing N N 330 HOH O H1 sing N N 331 HOH O H2 sing N N 332 ILE N CA sing N N 333 ILE N H sing N N 334 ILE N H2 sing N N 335 ILE CA C sing N N 336 ILE CA CB sing N N 337 ILE CA HA sing N N 338 ILE C O doub N N 339 ILE C OXT sing N N 340 ILE CB CG1 sing N N 341 ILE CB CG2 sing N N 342 ILE CB HB sing N N 343 ILE CG1 CD1 sing N N 344 ILE CG1 HG12 sing N N 345 ILE CG1 HG13 sing N N 346 ILE CG2 HG21 sing N N 347 ILE CG2 HG22 sing N N 348 ILE CG2 HG23 sing N N 349 ILE CD1 HD11 sing N N 350 ILE CD1 HD12 sing N N 351 ILE CD1 HD13 sing N N 352 ILE OXT HXT sing N N 353 LEU N CA sing N N 354 LEU N H sing N N 355 LEU N H2 sing N N 356 LEU CA C sing N N 357 LEU CA CB sing N N 358 LEU CA HA sing N N 359 LEU C O doub N N 360 LEU C OXT sing N N 361 LEU CB CG sing N N 362 LEU CB HB2 sing N N 363 LEU CB HB3 sing N N 364 LEU CG CD1 sing N N 365 LEU CG CD2 sing N N 366 LEU CG HG sing N N 367 LEU CD1 HD11 sing N N 368 LEU CD1 HD12 sing N N 369 LEU CD1 HD13 sing N N 370 LEU CD2 HD21 sing N N 371 LEU CD2 HD22 sing N N 372 LEU CD2 HD23 sing N N 373 LEU OXT HXT sing N N 374 LYS N CA sing N N 375 LYS N H sing N N 376 LYS N H2 sing N N 377 LYS CA C sing N N 378 LYS CA CB sing N N 379 LYS CA HA sing N N 380 LYS C O doub N N 381 LYS C OXT sing N N 382 LYS CB CG sing N N 383 LYS CB HB2 sing N N 384 LYS CB HB3 sing N N 385 LYS CG CD sing N N 386 LYS CG HG2 sing N N 387 LYS CG HG3 sing N N 388 LYS CD CE sing N N 389 LYS CD HD2 sing N N 390 LYS CD HD3 sing N N 391 LYS CE NZ sing N N 392 LYS CE HE2 sing N N 393 LYS CE HE3 sing N N 394 LYS NZ HZ1 sing N N 395 LYS NZ HZ2 sing N N 396 LYS NZ HZ3 sing N N 397 LYS OXT HXT sing N N 398 MET N CA sing N N 399 MET N H sing N N 400 MET N H2 sing N N 401 MET CA C sing N N 402 MET CA CB sing N N 403 MET CA HA sing N N 404 MET C O doub N N 405 MET C OXT sing N N 406 MET CB CG sing N N 407 MET CB HB2 sing N N 408 MET CB HB3 sing N N 409 MET CG SD sing N N 410 MET CG HG2 sing N N 411 MET CG HG3 sing N N 412 MET SD CE sing N N 413 MET CE HE1 sing N N 414 MET CE HE2 sing N N 415 MET CE HE3 sing N N 416 MET OXT HXT sing N N 417 PHE N CA sing N N 418 PHE N H sing N N 419 PHE N H2 sing N N 420 PHE CA C sing N N 421 PHE CA CB sing N N 422 PHE CA HA sing N N 423 PHE C O doub N N 424 PHE C OXT sing N N 425 PHE CB CG sing N N 426 PHE CB HB2 sing N N 427 PHE CB HB3 sing N N 428 PHE CG CD1 doub Y N 429 PHE CG CD2 sing Y N 430 PHE CD1 CE1 sing Y N 431 PHE CD1 HD1 sing N N 432 PHE CD2 CE2 doub Y N 433 PHE CD2 HD2 sing N N 434 PHE CE1 CZ doub Y N 435 PHE CE1 HE1 sing N N 436 PHE CE2 CZ sing Y N 437 PHE CE2 HE2 sing N N 438 PHE CZ HZ sing N N 439 PHE OXT HXT sing N N 440 PRO N CA sing N N 441 PRO N CD sing N N 442 PRO N H sing N N 443 PRO CA C sing N N 444 PRO CA CB sing N N 445 PRO CA HA sing N N 446 PRO C O doub N N 447 PRO C OXT sing N N 448 PRO CB CG sing N N 449 PRO CB HB2 sing N N 450 PRO CB HB3 sing N N 451 PRO CG CD sing N N 452 PRO CG HG2 sing N N 453 PRO CG HG3 sing N N 454 PRO CD HD2 sing N N 455 PRO CD HD3 sing N N 456 PRO OXT HXT sing N N 457 SER N CA sing N N 458 SER N H sing N N 459 SER N H2 sing N N 460 SER CA C sing N N 461 SER CA CB sing N N 462 SER CA HA sing N N 463 SER C O doub N N 464 SER C OXT sing N N 465 SER CB OG sing N N 466 SER CB HB2 sing N N 467 SER CB HB3 sing N N 468 SER OG HG sing N N 469 SER OXT HXT sing N N 470 THR N CA sing N N 471 THR N H sing N N 472 THR N H2 sing N N 473 THR CA C sing N N 474 THR CA CB sing N N 475 THR CA HA sing N N 476 THR C O doub N N 477 THR C OXT sing N N 478 THR CB OG1 sing N N 479 THR CB CG2 sing N N 480 THR CB HB sing N N 481 THR OG1 HG1 sing N N 482 THR CG2 HG21 sing N N 483 THR CG2 HG22 sing N N 484 THR CG2 HG23 sing N N 485 THR OXT HXT sing N N 486 TRP N CA sing N N 487 TRP N H sing N N 488 TRP N H2 sing N N 489 TRP CA C sing N N 490 TRP CA CB sing N N 491 TRP CA HA sing N N 492 TRP C O doub N N 493 TRP C OXT sing N N 494 TRP CB CG sing N N 495 TRP CB HB2 sing N N 496 TRP CB HB3 sing N N 497 TRP CG CD1 doub Y N 498 TRP CG CD2 sing Y N 499 TRP CD1 NE1 sing Y N 500 TRP CD1 HD1 sing N N 501 TRP CD2 CE2 doub Y N 502 TRP CD2 CE3 sing Y N 503 TRP NE1 CE2 sing Y N 504 TRP NE1 HE1 sing N N 505 TRP CE2 CZ2 sing Y N 506 TRP CE3 CZ3 doub Y N 507 TRP CE3 HE3 sing N N 508 TRP CZ2 CH2 doub Y N 509 TRP CZ2 HZ2 sing N N 510 TRP CZ3 CH2 sing Y N 511 TRP CZ3 HZ3 sing N N 512 TRP CH2 HH2 sing N N 513 TRP OXT HXT sing N N 514 TYR N CA sing N N 515 TYR N H sing N N 516 TYR N H2 sing N N 517 TYR CA C sing N N 518 TYR CA CB sing N N 519 TYR CA HA sing N N 520 TYR C O doub N N 521 TYR C OXT sing N N 522 TYR CB CG sing N N 523 TYR CB HB2 sing N N 524 TYR CB HB3 sing N N 525 TYR CG CD1 doub Y N 526 TYR CG CD2 sing Y N 527 TYR CD1 CE1 sing Y N 528 TYR CD1 HD1 sing N N 529 TYR CD2 CE2 doub Y N 530 TYR CD2 HD2 sing N N 531 TYR CE1 CZ doub Y N 532 TYR CE1 HE1 sing N N 533 TYR CE2 CZ sing Y N 534 TYR CE2 HE2 sing N N 535 TYR CZ OH sing N N 536 TYR OH HH sing N N 537 TYR OXT HXT sing N N 538 VAL N CA sing N N 539 VAL N H sing N N 540 VAL N H2 sing N N 541 VAL CA C sing N N 542 VAL CA CB sing N N 543 VAL CA HA sing N N 544 VAL C O doub N N 545 VAL C OXT sing N N 546 VAL CB CG1 sing N N 547 VAL CB CG2 sing N N 548 VAL CB HB sing N N 549 VAL CG1 HG11 sing N N 550 VAL CG1 HG12 sing N N 551 VAL CG1 HG13 sing N N 552 VAL CG2 HG21 sing N N 553 VAL CG2 HG22 sing N N 554 VAL CG2 HG23 sing N N 555 VAL OXT HXT sing N N 556 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 4E9F 'b-form double helix' 4E9F 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B DC 1 1_555 C DG 12 1_555 -0.388 0.519 0.529 -32.907 -9.443 -14.628 1 C_DC1:DG12_D C 1 ? D 12 ? ? 1 1 B DC 2 1_555 C DG 11 1_555 1.907 -0.254 0.162 -10.099 -0.971 11.581 2 C_DC2:DG11_D C 2 ? D 11 ? ? 1 1 B DA 3 1_555 C DT 10 1_555 0.510 -0.354 0.199 9.398 -10.200 -0.959 3 C_DA3:DT10_D C 3 ? D 10 ? 20 1 1 B DG 4 1_555 C DC 9 1_555 -0.825 -0.511 0.188 4.109 -9.659 -2.211 4 C_DG4:DC9_D C 4 ? D 9 ? 19 1 1 B DC 5 1_555 C DG 8 1_555 0.219 -0.273 0.010 -4.700 -5.342 1.491 5 C_DC5:DG8_D C 5 ? D 8 ? 19 1 1 B DG 6 1_555 C DC 7 1_555 -0.577 -0.226 0.331 8.392 -10.224 3.491 6 C_DG6:DC7_D C 6 ? D 7 ? 19 1 1 B DG 8 1_555 C DC 5 1_555 -0.231 -0.164 -0.508 -16.731 -7.115 -1.775 7 C_DG8:DC5_D C 8 ? D 5 ? 19 1 1 B DC 9 1_555 C DG 4 1_555 0.318 -0.196 -0.001 3.438 -4.113 -1.493 8 C_DC9:DG4_D C 9 ? D 4 ? 19 1 1 B DA 10 1_555 C DT 3 1_555 -0.029 -0.222 0.004 8.086 -11.753 2.008 9 C_DA10:DT3_D C 10 ? D 3 ? 20 1 1 B DG 11 1_555 C DC 2 1_555 -0.149 -0.273 0.157 7.552 -14.333 -1.805 10 C_DG11:DC2_D C 11 ? D 2 ? 19 1 1 B DC 12 1_555 C DG 1 1_555 0.073 -0.266 -0.343 10.260 -9.444 -1.484 11 C_DC12:DG1_D C 12 ? D 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B DC 1 1_555 C DG 12 1_555 B DC 2 1_555 C DG 11 1_555 0.257 -0.302 2.899 4.331 4.427 44.028 -0.761 0.014 2.869 5.870 -5.743 44.440 1 CC_DC1DC2:DG11DG12_DD C 1 ? D 12 ? C 2 ? D 11 ? 1 B DC 2 1_555 C DG 11 1_555 B DA 3 1_555 C DT 10 1_555 -0.749 1.251 2.992 1.602 5.114 29.618 1.425 1.751 3.115 9.901 -3.102 30.088 2 CC_DC2DA3:DT10DG11_DD C 2 ? D 11 ? C 3 ? D 10 ? 1 B DA 3 1_555 C DT 10 1_555 B DG 4 1_555 C DC 9 1_555 -0.579 -0.162 3.357 -2.329 1.256 29.949 -0.577 0.623 3.382 2.425 4.496 30.063 3 CC_DA3DG4:DC9DT10_DD C 3 ? D 10 ? C 4 ? D 9 ? 1 B DG 4 1_555 C DC 9 1_555 B DC 5 1_555 C DG 8 1_555 0.697 -0.521 3.580 3.272 -1.741 38.668 -0.548 -0.608 3.644 -2.621 -4.927 38.838 4 CC_DG4DC5:DG8DC9_DD C 4 ? D 9 ? C 5 ? D 8 ? 1 B DC 5 1_555 C DG 8 1_555 B DG 6 1_555 C DC 7 1_555 -0.589 0.959 3.170 -3.054 3.443 33.174 1.102 0.523 3.289 5.994 5.318 33.483 5 CC_DC5DG6:DC7DG8_DD C 5 ? D 8 ? C 6 ? D 7 ? 1 B DG 8 1_555 C DC 5 1_555 B DC 9 1_555 C DG 4 1_555 -0.365 0.047 2.839 -6.251 1.238 24.972 -0.202 -0.727 2.843 2.806 14.164 25.760 6 CC_DG8DC9:DG4DC5_DD C 8 ? D 5 ? C 9 ? D 4 ? 1 B DC 9 1_555 C DG 4 1_555 B DA 10 1_555 C DT 3 1_555 0.440 0.540 3.233 3.494 5.778 36.298 0.065 -0.219 3.304 9.178 -5.550 36.900 7 CC_DC9DA10:DT3DG4_DD C 9 ? D 4 ? C 10 ? D 3 ? 1 B DA 10 1_555 C DT 3 1_555 B DG 11 1_555 C DC 2 1_555 -0.164 0.230 3.406 -1.556 4.890 32.692 -0.462 0.013 3.408 8.620 2.743 33.082 8 CC_DA10DG11:DC2DT3_DD C 10 ? D 3 ? C 11 ? D 2 ? 1 B DG 11 1_555 C DC 2 1_555 B DC 12 1_555 C DG 1 1_555 0.751 0.081 3.280 6.528 -4.792 33.946 0.880 -0.239 3.321 -8.066 -10.987 34.871 9 CC_DG11DC12:DG1DC2_DD C 11 ? D 2 ? C 12 ? D 1 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 1,2-ETHANEDIOL EDO 5 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 4ENE _pdbx_initial_refinement_model.details 'PDB ENTRY 4ENE' #