data_4E9H # _entry.id 4E9H # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4E9H pdb_00004e9h 10.2210/pdb4e9h/pdb NDB NA1689 ? ? RCSB RCSB071337 ? ? WWPDB D_1000071337 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-08-08 2 'Structure model' 1 1 2012-11-07 3 'Structure model' 1 2 2024-02-28 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' struct_conn 5 3 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 3 'Structure model' '_struct_ref_seq_dif.details' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4E9H _pdbx_database_status.recvd_initial_deposition_date 2012-03-21 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 4E9E . unspecified PDB 4E9F . unspecified PDB 4E9G . unspecified PDB 4EA4 . unspecified PDB 4EAB . unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Morera, S.' 1 'Vigouroux, A.' 2 # _citation.id primary _citation.title ;Biochemical and structural characterization of the glycosylase domain of MBD4 bound to thymine and 5-hydroxymethyuracil-containing DNA. ; _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_volume 40 _citation.page_first 9917 _citation.page_last 9926 _citation.year 2012 _citation.journal_id_ASTM NARHAD _citation.country UK _citation.journal_id_ISSN 0305-1048 _citation.journal_id_CSD 0389 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22848106 _citation.pdbx_database_id_DOI 10.1093/nar/gks714 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Morera, S.' 1 ? primary 'Grin, I.' 2 ? primary 'Vigouroux, A.' 3 ? primary 'Couve, S.' 4 ? primary 'Henriot, V.' 5 ? primary 'Saparbaev, M.' 6 ? primary 'Ishchenko, A.A.' 7 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Methyl-CpG-binding domain protein 4' 19372.383 1 3.2.2.- D560A 'glycosylase domain of MBD4 (residues 426-580)' ? 2 polymer syn ;DNA (5'-D(*CP*CP*AP*GP*CP*GP*(5HU)P*GP*CP*AP*GP*C)-3') ; 3664.381 1 ? ? ? ? 3 polymer syn ;DNA (5'-D(*GP*CP*TP*GP*CP*GP*CP*GP*CP*TP*GP*G)-3') ; 3695.390 1 ? ? ? ? 4 water nat water 18.015 3 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Methyl-CpG-binding endonuclease 1, Methyl-CpG-binding protein MBD4, Mismatch-specific DNA N-glycosylase' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;MLSPPRRKAFKKWTPPRSPFNLVQETLFHDPWKLLIATIFLNRTSGKMAIPVLWKFLEKYPSAEVARTADWRDVSELLKP LGLYDLRAKTIVKFSDEYLTKQWKYPIELHGIGKYGNDSYRIFCVNEWKQVHPEAHKLNKYHDWLWENHEKLSLSHHHHH H ; ;MLSPPRRKAFKKWTPPRSPFNLVQETLFHDPWKLLIATIFLNRTSGKMAIPVLWKFLEKYPSAEVARTADWRDVSELLKP LGLYDLRAKTIVKFSDEYLTKQWKYPIELHGIGKYGNDSYRIFCVNEWKQVHPEAHKLNKYHDWLWENHEKLSLSHHHHH H ; A ? 2 polydeoxyribonucleotide no yes '(DC)(DC)(DA)(DG)(DC)(DG)(5HU)(DG)(DC)(DA)(DG)(DC)' CCAGCGUGCAGC C ? 3 polydeoxyribonucleotide no no '(DG)(DC)(DT)(DG)(DC)(DG)(DC)(DG)(DC)(DT)(DG)(DG)' GCTGCGCGCTGG D ? # _pdbx_entity_nonpoly.entity_id 4 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 LEU n 1 3 SER n 1 4 PRO n 1 5 PRO n 1 6 ARG n 1 7 ARG n 1 8 LYS n 1 9 ALA n 1 10 PHE n 1 11 LYS n 1 12 LYS n 1 13 TRP n 1 14 THR n 1 15 PRO n 1 16 PRO n 1 17 ARG n 1 18 SER n 1 19 PRO n 1 20 PHE n 1 21 ASN n 1 22 LEU n 1 23 VAL n 1 24 GLN n 1 25 GLU n 1 26 THR n 1 27 LEU n 1 28 PHE n 1 29 HIS n 1 30 ASP n 1 31 PRO n 1 32 TRP n 1 33 LYS n 1 34 LEU n 1 35 LEU n 1 36 ILE n 1 37 ALA n 1 38 THR n 1 39 ILE n 1 40 PHE n 1 41 LEU n 1 42 ASN n 1 43 ARG n 1 44 THR n 1 45 SER n 1 46 GLY n 1 47 LYS n 1 48 MET n 1 49 ALA n 1 50 ILE n 1 51 PRO n 1 52 VAL n 1 53 LEU n 1 54 TRP n 1 55 LYS n 1 56 PHE n 1 57 LEU n 1 58 GLU n 1 59 LYS n 1 60 TYR n 1 61 PRO n 1 62 SER n 1 63 ALA n 1 64 GLU n 1 65 VAL n 1 66 ALA n 1 67 ARG n 1 68 THR n 1 69 ALA n 1 70 ASP n 1 71 TRP n 1 72 ARG n 1 73 ASP n 1 74 VAL n 1 75 SER n 1 76 GLU n 1 77 LEU n 1 78 LEU n 1 79 LYS n 1 80 PRO n 1 81 LEU n 1 82 GLY n 1 83 LEU n 1 84 TYR n 1 85 ASP n 1 86 LEU n 1 87 ARG n 1 88 ALA n 1 89 LYS n 1 90 THR n 1 91 ILE n 1 92 VAL n 1 93 LYS n 1 94 PHE n 1 95 SER n 1 96 ASP n 1 97 GLU n 1 98 TYR n 1 99 LEU n 1 100 THR n 1 101 LYS n 1 102 GLN n 1 103 TRP n 1 104 LYS n 1 105 TYR n 1 106 PRO n 1 107 ILE n 1 108 GLU n 1 109 LEU n 1 110 HIS n 1 111 GLY n 1 112 ILE n 1 113 GLY n 1 114 LYS n 1 115 TYR n 1 116 GLY n 1 117 ASN n 1 118 ASP n 1 119 SER n 1 120 TYR n 1 121 ARG n 1 122 ILE n 1 123 PHE n 1 124 CYS n 1 125 VAL n 1 126 ASN n 1 127 GLU n 1 128 TRP n 1 129 LYS n 1 130 GLN n 1 131 VAL n 1 132 HIS n 1 133 PRO n 1 134 GLU n 1 135 ALA n 1 136 HIS n 1 137 LYS n 1 138 LEU n 1 139 ASN n 1 140 LYS n 1 141 TYR n 1 142 HIS n 1 143 ASP n 1 144 TRP n 1 145 LEU n 1 146 TRP n 1 147 GLU n 1 148 ASN n 1 149 HIS n 1 150 GLU n 1 151 LYS n 1 152 LEU n 1 153 SER n 1 154 LEU n 1 155 SER n 1 156 HIS n 1 157 HIS n 1 158 HIS n 1 159 HIS n 1 160 HIS n 1 161 HIS n 2 1 DC n 2 2 DC n 2 3 DA n 2 4 DG n 2 5 DC n 2 6 DG n 2 7 5HU n 2 8 DG n 2 9 DC n 2 10 DA n 2 11 DG n 2 12 DC n 3 1 DG n 3 2 DC n 3 3 DT n 3 4 DG n 3 5 DC n 3 6 DG n 3 7 DC n 3 8 DG n 3 9 DC n 3 10 DT n 3 11 DG n 3 12 DG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'MBD4, MED1' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 2 1 sample ? ? synthetic ? 32630 ? 3 1 sample ? ? synthetic ? 32630 ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 5HU 'DNA linking' n "5-HYDROXYMETHYLURIDINE-2'-DEOXY-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O9 P' 338.208 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 426 ? ? ? A . n A 1 2 LEU 2 427 ? ? ? A . n A 1 3 SER 3 428 ? ? ? A . n A 1 4 PRO 4 429 ? ? ? A . n A 1 5 PRO 5 430 ? ? ? A . n A 1 6 ARG 6 431 ? ? ? A . n A 1 7 ARG 7 432 ? ? ? A . n A 1 8 LYS 8 433 ? ? ? A . n A 1 9 ALA 9 434 ? ? ? A . n A 1 10 PHE 10 435 ? ? ? A . n A 1 11 LYS 11 436 ? ? ? A . n A 1 12 LYS 12 437 ? ? ? A . n A 1 13 TRP 13 438 438 TRP TRP A . n A 1 14 THR 14 439 439 THR THR A . n A 1 15 PRO 15 440 440 PRO PRO A . n A 1 16 PRO 16 441 441 PRO PRO A . n A 1 17 ARG 17 442 442 ARG ARG A . n A 1 18 SER 18 443 443 SER SER A . n A 1 19 PRO 19 444 444 PRO PRO A . n A 1 20 PHE 20 445 445 PHE PHE A . n A 1 21 ASN 21 446 446 ASN ASN A . n A 1 22 LEU 22 447 447 LEU LEU A . n A 1 23 VAL 23 448 448 VAL VAL A . n A 1 24 GLN 24 449 449 GLN GLN A . n A 1 25 GLU 25 450 450 GLU GLU A . n A 1 26 THR 26 451 451 THR THR A . n A 1 27 LEU 27 452 452 LEU LEU A . n A 1 28 PHE 28 453 453 PHE PHE A . n A 1 29 HIS 29 454 454 HIS HIS A . n A 1 30 ASP 30 455 455 ASP ASP A . n A 1 31 PRO 31 456 456 PRO PRO A . n A 1 32 TRP 32 457 457 TRP TRP A . n A 1 33 LYS 33 458 458 LYS LYS A . n A 1 34 LEU 34 459 459 LEU LEU A . n A 1 35 LEU 35 460 460 LEU LEU A . n A 1 36 ILE 36 461 461 ILE ILE A . n A 1 37 ALA 37 462 462 ALA ALA A . n A 1 38 THR 38 463 463 THR THR A . n A 1 39 ILE 39 464 464 ILE ILE A . n A 1 40 PHE 40 465 465 PHE PHE A . n A 1 41 LEU 41 466 466 LEU LEU A . n A 1 42 ASN 42 467 467 ASN ASN A . n A 1 43 ARG 43 468 468 ARG ARG A . n A 1 44 THR 44 469 469 THR THR A . n A 1 45 SER 45 470 470 SER SER A . n A 1 46 GLY 46 471 471 GLY GLY A . n A 1 47 LYS 47 472 472 LYS LYS A . n A 1 48 MET 48 473 473 MET MET A . n A 1 49 ALA 49 474 474 ALA ALA A . n A 1 50 ILE 50 475 475 ILE ILE A . n A 1 51 PRO 51 476 476 PRO PRO A . n A 1 52 VAL 52 477 477 VAL VAL A . n A 1 53 LEU 53 478 478 LEU LEU A . n A 1 54 TRP 54 479 479 TRP TRP A . n A 1 55 LYS 55 480 480 LYS LYS A . n A 1 56 PHE 56 481 481 PHE PHE A . n A 1 57 LEU 57 482 482 LEU LEU A . n A 1 58 GLU 58 483 483 GLU GLU A . n A 1 59 LYS 59 484 484 LYS LYS A . n A 1 60 TYR 60 485 485 TYR TYR A . n A 1 61 PRO 61 486 486 PRO PRO A . n A 1 62 SER 62 487 487 SER SER A . n A 1 63 ALA 63 488 488 ALA ALA A . n A 1 64 GLU 64 489 489 GLU GLU A . n A 1 65 VAL 65 490 490 VAL VAL A . n A 1 66 ALA 66 491 491 ALA ALA A . n A 1 67 ARG 67 492 492 ARG ARG A . n A 1 68 THR 68 493 493 THR THR A . n A 1 69 ALA 69 494 494 ALA ALA A . n A 1 70 ASP 70 495 495 ASP ASP A . n A 1 71 TRP 71 496 496 TRP TRP A . n A 1 72 ARG 72 497 497 ARG ARG A . n A 1 73 ASP 73 498 498 ASP ASP A . n A 1 74 VAL 74 499 499 VAL VAL A . n A 1 75 SER 75 500 500 SER SER A . n A 1 76 GLU 76 501 501 GLU GLU A . n A 1 77 LEU 77 502 502 LEU LEU A . n A 1 78 LEU 78 503 503 LEU LEU A . n A 1 79 LYS 79 504 504 LYS LYS A . n A 1 80 PRO 80 505 505 PRO PRO A . n A 1 81 LEU 81 506 506 LEU LEU A . n A 1 82 GLY 82 507 507 GLY GLY A . n A 1 83 LEU 83 508 508 LEU LEU A . n A 1 84 TYR 84 509 509 TYR TYR A . n A 1 85 ASP 85 510 510 ASP ASP A . n A 1 86 LEU 86 511 511 LEU LEU A . n A 1 87 ARG 87 512 512 ARG ARG A . n A 1 88 ALA 88 513 513 ALA ALA A . n A 1 89 LYS 89 514 514 LYS LYS A . n A 1 90 THR 90 515 515 THR THR A . n A 1 91 ILE 91 516 516 ILE ILE A . n A 1 92 VAL 92 517 517 VAL VAL A . n A 1 93 LYS 93 518 518 LYS LYS A . n A 1 94 PHE 94 519 519 PHE PHE A . n A 1 95 SER 95 520 520 SER SER A . n A 1 96 ASP 96 521 521 ASP ASP A . n A 1 97 GLU 97 522 522 GLU GLU A . n A 1 98 TYR 98 523 523 TYR TYR A . n A 1 99 LEU 99 524 524 LEU LEU A . n A 1 100 THR 100 525 525 THR THR A . n A 1 101 LYS 101 526 526 LYS LYS A . n A 1 102 GLN 102 527 527 GLN GLN A . n A 1 103 TRP 103 528 528 TRP TRP A . n A 1 104 LYS 104 529 529 LYS LYS A . n A 1 105 TYR 105 530 530 TYR TYR A . n A 1 106 PRO 106 531 531 PRO PRO A . n A 1 107 ILE 107 532 532 ILE ILE A . n A 1 108 GLU 108 533 533 GLU GLU A . n A 1 109 LEU 109 534 534 LEU LEU A . n A 1 110 HIS 110 535 535 HIS HIS A . n A 1 111 GLY 111 536 536 GLY GLY A . n A 1 112 ILE 112 537 537 ILE ILE A . n A 1 113 GLY 113 538 538 GLY GLY A . n A 1 114 LYS 114 539 539 LYS LYS A . n A 1 115 TYR 115 540 540 TYR TYR A . n A 1 116 GLY 116 541 541 GLY GLY A . n A 1 117 ASN 117 542 542 ASN ASN A . n A 1 118 ASP 118 543 543 ASP ASP A . n A 1 119 SER 119 544 544 SER SER A . n A 1 120 TYR 120 545 545 TYR TYR A . n A 1 121 ARG 121 546 546 ARG ARG A . n A 1 122 ILE 122 547 547 ILE ILE A . n A 1 123 PHE 123 548 548 PHE PHE A . n A 1 124 CYS 124 549 549 CYS CYS A . n A 1 125 VAL 125 550 550 VAL VAL A . n A 1 126 ASN 126 551 551 ASN ASN A . n A 1 127 GLU 127 552 552 GLU GLU A . n A 1 128 TRP 128 553 553 TRP TRP A . n A 1 129 LYS 129 554 554 LYS LYS A . n A 1 130 GLN 130 555 555 GLN GLN A . n A 1 131 VAL 131 556 556 VAL VAL A . n A 1 132 HIS 132 557 557 HIS HIS A . n A 1 133 PRO 133 558 558 PRO PRO A . n A 1 134 GLU 134 559 559 GLU GLU A . n A 1 135 ALA 135 560 560 ALA ALA A . n A 1 136 HIS 136 561 561 HIS HIS A . n A 1 137 LYS 137 562 562 LYS LYS A . n A 1 138 LEU 138 563 563 LEU LEU A . n A 1 139 ASN 139 564 564 ASN ASN A . n A 1 140 LYS 140 565 565 LYS LYS A . n A 1 141 TYR 141 566 566 TYR TYR A . n A 1 142 HIS 142 567 567 HIS HIS A . n A 1 143 ASP 143 568 568 ASP ASP A . n A 1 144 TRP 144 569 569 TRP TRP A . n A 1 145 LEU 145 570 570 LEU LEU A . n A 1 146 TRP 146 571 571 TRP TRP A . n A 1 147 GLU 147 572 572 GLU GLU A . n A 1 148 ASN 148 573 573 ASN ASN A . n A 1 149 HIS 149 574 574 HIS HIS A . n A 1 150 GLU 150 575 ? ? ? A . n A 1 151 LYS 151 576 ? ? ? A . n A 1 152 LEU 152 577 ? ? ? A . n A 1 153 SER 153 578 ? ? ? A . n A 1 154 LEU 154 579 ? ? ? A . n A 1 155 SER 155 580 ? ? ? A . n A 1 156 HIS 156 581 ? ? ? A . n A 1 157 HIS 157 582 ? ? ? A . n A 1 158 HIS 158 583 ? ? ? A . n A 1 159 HIS 159 584 ? ? ? A . n A 1 160 HIS 160 585 ? ? ? A . n A 1 161 HIS 161 586 ? ? ? A . n B 2 1 DC 1 1 1 DC DC C . n B 2 2 DC 2 2 2 DC DC C . n B 2 3 DA 3 3 3 DA DA C . n B 2 4 DG 4 4 4 DG DG C . n B 2 5 DC 5 5 5 DC DC C . n B 2 6 DG 6 6 6 DG DG C . n B 2 7 5HU 7 7 7 5HU 5HU C . n B 2 8 DG 8 8 8 DG DG C . n B 2 9 DC 9 9 9 DC DC C . n B 2 10 DA 10 10 10 DA DA C . n B 2 11 DG 11 11 11 DG DG C . n B 2 12 DC 12 12 12 DC DC C . n C 3 1 DG 1 1 1 DG DG D . n C 3 2 DC 2 2 2 DC DC D . n C 3 3 DT 3 3 3 DT DT D . n C 3 4 DG 4 4 4 DG DG D . n C 3 5 DC 5 5 5 DC DC D . n C 3 6 DG 6 6 6 DG DG D . n C 3 7 DC 7 7 7 DC DC D . n C 3 8 DG 8 8 8 DG DG D . n C 3 9 DC 9 9 9 DC DC D . n C 3 10 DT 10 10 10 DT DT D . n C 3 11 DG 11 11 11 DG DG D . n C 3 12 DG 12 12 12 DG DG D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 HOH 1 601 1 HOH HOH A . D 4 HOH 2 602 2 HOH HOH A . D 4 HOH 3 603 3 HOH HOH A . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal DNA 'data collection' . ? 1 PHASER phasing . ? 2 BUSTER refinement 2.10.0 ? 3 XDS 'data reduction' . ? 4 XDS 'data scaling' . ? 5 # _cell.entry_id 4E9H _cell.length_a 41.090 _cell.length_b 96.700 _cell.length_c 55.100 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4E9H _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # _exptl.entry_id 4E9H _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.05 _exptl_crystal.density_percent_sol 39.93 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '25% PEG 1500, 0.1 M HEPES, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K' # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector PIXEL _diffrn_detector.type 'PSI PILATUS 6M' _diffrn_detector.pdbx_collection_date 2011-11-27 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength .9 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SOLEIL BEAMLINE PROXIMA 1' _diffrn_source.pdbx_synchrotron_site SOLEIL _diffrn_source.pdbx_synchrotron_beamline 'PROXIMA 1' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list .9 # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 4E9H _reflns.observed_criterion_sigma_I 2 _reflns.observed_criterion_sigma_F 2 _reflns.d_resolution_low 47.87 _reflns.d_resolution_high 3 _reflns.number_obs 4698 _reflns.number_all 4698 _reflns.percent_possible_obs 99.2 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate 63.03 _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 3 _reflns_shell.d_res_low 3.18 _reflns_shell.percent_possible_all 98.9 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 4E9H _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 4690 _refine.ls_number_reflns_all 4698 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 47.87 _refine.ls_d_res_high 3.00 _refine.ls_percent_reflns_obs 99.24 _refine.ls_R_factor_obs 0.1835 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1732 _refine.ls_R_factor_R_free 0.2577 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 12.39 _refine.ls_number_reflns_R_free 581 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.9292 _refine.correlation_coeff_Fo_to_Fc_free 0.8483 _refine.B_iso_mean 47.87 _refine.aniso_B[1][1] 4.6692 _refine.aniso_B[2][2] 3.1621 _refine.aniso_B[3][3] -7.8313 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? # _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_analyze.entry_id 4E9H _refine_analyze.Luzzati_coordinate_error_obs 0.300 _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1167 _refine_hist.pdbx_number_atoms_nucleic_acid 488 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 3 _refine_hist.number_atoms_total 1658 _refine_hist.d_res_high 3.00 _refine_hist.d_res_low 47.87 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function t_bond_d 0.010 ? 2.00 1756 'X-RAY DIFFRACTION' HARMONIC t_angle_deg 1.23 ? 2.00 2479 'X-RAY DIFFRACTION' HARMONIC t_dihedral_angle_d ? ? 2.00 672 'X-RAY DIFFRACTION' SINUSOIDAL t_incorr_chiral_ct ? ? ? ? 'X-RAY DIFFRACTION' ? t_pseud_angle ? ? ? ? 'X-RAY DIFFRACTION' ? t_trig_c_planes ? ? 2.00 25 'X-RAY DIFFRACTION' HARMONIC t_gen_planes ? ? 5.00 193 'X-RAY DIFFRACTION' HARMONIC t_it ? ? 20.00 1756 'X-RAY DIFFRACTION' HARMONIC t_nbd ? ? ? ? 'X-RAY DIFFRACTION' ? t_omega_torsion 2.78 ? ? ? 'X-RAY DIFFRACTION' ? t_other_torsion 22.31 ? ? ? 'X-RAY DIFFRACTION' ? t_improper_torsion ? ? ? ? 'X-RAY DIFFRACTION' ? t_chiral_improper_torsion ? ? 5.00 215 'X-RAY DIFFRACTION' SEMIHARMONIC t_sum_occupancies ? ? ? ? 'X-RAY DIFFRACTION' ? t_utility_distance ? ? ? ? 'X-RAY DIFFRACTION' ? t_utility_angle ? ? ? ? 'X-RAY DIFFRACTION' ? t_utility_torsion ? ? ? ? 'X-RAY DIFFRACTION' ? t_ideal_dist_contact ? ? 4.00 1890 'X-RAY DIFFRACTION' SEMIHARMONIC # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 5 _refine_ls_shell.d_res_high 3.00 _refine_ls_shell.d_res_low 3.35 _refine_ls_shell.number_reflns_R_work 1121 _refine_ls_shell.R_factor_R_work 0.1882 _refine_ls_shell.percent_reflns_obs 99.24 _refine_ls_shell.R_factor_R_free 0.3045 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free 12.56 _refine_ls_shell.number_reflns_R_free 161 _refine_ls_shell.number_reflns_all 1282 _refine_ls_shell.R_factor_all 0.2024 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_obs ? # _database_PDB_matrix.entry_id 4E9H _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 4E9H _struct.title 'structure of glycosylase domain of MBD4 bound to 5hmU containing DNA' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4E9H _struct_keywords.pdbx_keywords HYDROLASE/DNA _struct_keywords.text 'HhH DNA glycosylase family, HYDROLASE-DNA complex' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP MBD4_HUMAN O95243 1 ;LSPPRRKAFKKWTPPRSPFNLVQETLFHDPWKLLIATIFLNRTSGKMAIPVLWKFLEKYPSAEVARTADWRDVSELLKPL GLYDLRAKTIVKFSDEYLTKQWKYPIELHGIGKYGNDSYRIFCVNEWKQVHPEDHKLNKYHDWLWENHEKLSLS ; 427 ? 2 PDB 4E9H 4E9H 2 CCAGCGUGCAGC 1 ? 3 PDB 4E9H 4E9H 3 GCTGCGCGCTGG 1 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4E9H A 2 ? 155 ? O95243 427 ? 580 ? 427 580 2 2 4E9H C 1 ? 12 ? 4E9H 1 ? 12 ? 1 12 3 3 4E9H D 1 ? 12 ? 4E9H 1 ? 12 ? 1 12 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4E9H MET A 1 ? UNP O95243 ? ? 'expression tag' 426 1 1 4E9H ALA A 135 ? UNP O95243 ASP 560 'engineered mutation' 560 2 1 4E9H HIS A 156 ? UNP O95243 ? ? 'expression tag' 581 3 1 4E9H HIS A 157 ? UNP O95243 ? ? 'expression tag' 582 4 1 4E9H HIS A 158 ? UNP O95243 ? ? 'expression tag' 583 5 1 4E9H HIS A 159 ? UNP O95243 ? ? 'expression tag' 584 6 1 4E9H HIS A 160 ? UNP O95243 ? ? 'expression tag' 585 7 1 4E9H HIS A 161 ? UNP O95243 ? ? 'expression tag' 586 8 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3820 ? 1 MORE -17 ? 1 'SSA (A^2)' 9990 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 VAL A 23 ? PHE A 28 ? VAL A 448 PHE A 453 1 ? 6 HELX_P HELX_P2 2 ASP A 30 ? LEU A 41 ? ASP A 455 LEU A 466 1 ? 12 HELX_P HELX_P3 3 SER A 45 ? TYR A 60 ? SER A 470 TYR A 485 1 ? 16 HELX_P HELX_P4 4 SER A 62 ? ARG A 67 ? SER A 487 ARG A 492 1 ? 6 HELX_P HELX_P5 5 ASP A 70 ? LYS A 79 ? ASP A 495 LYS A 504 1 ? 10 HELX_P HELX_P6 6 PRO A 80 ? GLY A 82 ? PRO A 505 GLY A 507 5 ? 3 HELX_P HELX_P7 7 LEU A 83 ? LYS A 101 ? LEU A 508 LYS A 526 1 ? 19 HELX_P HELX_P8 8 TYR A 105 ? LEU A 109 ? TYR A 530 LEU A 534 5 ? 5 HELX_P HELX_P9 9 GLY A 113 ? CYS A 124 ? GLY A 538 CYS A 549 1 ? 12 HELX_P HELX_P10 10 GLU A 127 ? VAL A 131 ? GLU A 552 VAL A 556 5 ? 5 HELX_P HELX_P11 11 ALA A 135 ? ASN A 148 ? ALA A 560 ASN A 573 1 ? 14 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? B DG 6 "O3'" ? ? ? 1_555 B 5HU 7 P ? ? C DG 6 C 5HU 7 1_555 ? ? ? ? ? ? ? 1.572 ? ? covale2 covale both ? B 5HU 7 "O3'" ? ? ? 1_555 B DG 8 P ? ? C 5HU 7 C DG 8 1_555 ? ? ? ? ? ? ? 1.608 ? ? hydrog1 hydrog ? ? B DC 1 N3 ? ? ? 1_555 C DG 12 N1 ? ? C DC 1 D DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? B DC 1 N4 ? ? ? 1_555 C DG 12 O6 ? ? C DC 1 D DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? B DC 1 O2 ? ? ? 1_555 C DG 12 N2 ? ? C DC 1 D DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? B DC 2 N3 ? ? ? 1_555 C DG 11 N1 ? ? C DC 2 D DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? B DC 2 N4 ? ? ? 1_555 C DG 11 O6 ? ? C DC 2 D DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? B DC 2 O2 ? ? ? 1_555 C DG 11 N2 ? ? C DC 2 D DG 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? B DA 3 N1 ? ? ? 1_555 C DT 10 N3 ? ? C DA 3 D DT 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? B DA 3 N6 ? ? ? 1_555 C DT 10 O4 ? ? C DA 3 D DT 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? B DG 4 N1 ? ? ? 1_555 C DC 9 N3 ? ? C DG 4 D DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? B DG 4 N2 ? ? ? 1_555 C DC 9 O2 ? ? C DG 4 D DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? B DG 4 O6 ? ? ? 1_555 C DC 9 N4 ? ? C DG 4 D DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? B DC 5 N3 ? ? ? 1_555 C DG 8 N1 ? ? C DC 5 D DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? B DC 5 N4 ? ? ? 1_555 C DG 8 O6 ? ? C DC 5 D DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? B DC 5 O2 ? ? ? 1_555 C DG 8 N2 ? ? C DC 5 D DG 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? B DG 6 N1 ? ? ? 1_555 C DC 7 N3 ? ? C DG 6 D DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? B DG 6 N2 ? ? ? 1_555 C DC 7 O2 ? ? C DG 6 D DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? B DG 6 O6 ? ? ? 1_555 C DC 7 N4 ? ? C DG 6 D DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? B DG 8 N1 ? ? ? 1_555 C DC 5 N3 ? ? C DG 8 D DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? B DG 8 N2 ? ? ? 1_555 C DC 5 O2 ? ? C DG 8 D DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? B DG 8 O6 ? ? ? 1_555 C DC 5 N4 ? ? C DG 8 D DC 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? B DC 9 N3 ? ? ? 1_555 C DG 4 N1 ? ? C DC 9 D DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? B DC 9 N4 ? ? ? 1_555 C DG 4 O6 ? ? C DC 9 D DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? B DC 9 O2 ? ? ? 1_555 C DG 4 N2 ? ? C DC 9 D DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? B DA 10 N1 ? ? ? 1_555 C DT 3 N3 ? ? C DA 10 D DT 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? B DA 10 N6 ? ? ? 1_555 C DT 3 O4 ? ? C DA 10 D DT 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? B DG 11 N1 ? ? ? 1_555 C DC 2 N3 ? ? C DG 11 D DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? B DG 11 N2 ? ? ? 1_555 C DC 2 O2 ? ? C DG 11 D DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? B DG 11 O6 ? ? ? 1_555 C DC 2 N4 ? ? C DG 11 D DC 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? B DC 12 N3 ? ? ? 1_555 C DG 1 N1 ? ? C DC 12 D DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? B DC 12 N4 ? ? ? 1_555 C DG 1 O6 ? ? C DC 12 D DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? B DC 12 O2 ? ? ? 1_555 C DG 1 N2 ? ? C DC 12 D DG 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" C DC 1 ? ? "C1'" C DC 1 ? ? N1 C DC 1 ? ? 111.96 108.30 3.66 0.30 N 2 1 "O4'" C DC 2 ? ? "C1'" C DC 2 ? ? N1 C DC 2 ? ? 110.57 108.30 2.27 0.30 N 3 1 "C3'" C DC 5 ? ? "C2'" C DC 5 ? ? "C1'" C DC 5 ? ? 97.10 102.40 -5.30 0.80 N 4 1 "O4'" C DC 5 ? ? "C1'" C DC 5 ? ? N1 C DC 5 ? ? 114.16 108.30 5.86 0.30 N 5 1 "C3'" C 5HU 7 ? ? "O3'" C 5HU 7 ? ? P C DG 8 ? ? 131.70 119.70 12.00 1.20 Y 6 1 "C3'" C DG 11 ? ? "O3'" C DG 11 ? ? P C DC 12 ? ? 129.40 119.70 9.70 1.20 Y 7 1 "O4'" C DC 12 ? ? "C1'" C DC 12 ? ? N1 C DC 12 ? ? 112.67 108.30 4.37 0.30 N 8 1 "O4'" D DG 1 ? ? "C1'" D DG 1 ? ? N9 D DG 1 ? ? 111.13 108.30 2.83 0.30 N 9 1 "C3'" D DG 1 ? ? "O3'" D DG 1 ? ? P D DC 2 ? ? 127.87 119.70 8.17 1.20 Y 10 1 "O4'" D DC 2 ? ? "C1'" D DC 2 ? ? N1 D DC 2 ? ? 111.21 108.30 2.91 0.30 N 11 1 "O4'" D DT 3 ? ? "C1'" D DT 3 ? ? N1 D DT 3 ? ? 112.85 108.30 4.55 0.30 N 12 1 "C3'" D DG 4 ? ? "O3'" D DG 4 ? ? P D DC 5 ? ? 129.57 119.70 9.87 1.20 Y 13 1 "C3'" D DG 6 ? ? "O3'" D DG 6 ? ? P D DC 7 ? ? 127.54 119.70 7.84 1.20 Y 14 1 "O4'" D DC 7 ? ? "C1'" D DC 7 ? ? N1 D DC 7 ? ? 112.60 108.30 4.30 0.30 N 15 1 "O5'" D DG 8 ? ? "C5'" D DG 8 ? ? "C4'" D DG 8 ? ? 103.40 109.40 -6.00 0.80 N 16 1 "C3'" D DG 8 ? ? "O3'" D DG 8 ? ? P D DC 9 ? ? 127.97 119.70 8.27 1.20 Y 17 1 "O4'" D DT 10 ? ? "C1'" D DT 10 ? ? N1 D DT 10 ? ? 111.00 108.30 2.70 0.30 N 18 1 N3 D DT 10 ? ? C2 D DT 10 ? ? O2 D DT 10 ? ? 118.70 122.30 -3.60 0.60 N 19 1 "C3'" D DT 10 ? ? "O3'" D DT 10 ? ? P D DG 11 ? ? 130.45 119.70 10.75 1.20 Y 20 1 "O4'" D DG 11 ? ? "C1'" D DG 11 ? ? N9 D DG 11 ? ? 111.24 108.30 2.94 0.30 N 21 1 "O4'" D DG 12 ? ? "C1'" D DG 12 ? ? N9 D DG 12 ? ? 110.96 108.30 2.66 0.30 N # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id GLU _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 552 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -147.65 _pdbx_validate_torsion.psi 11.42 # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id B _pdbx_struct_mod_residue.label_comp_id 5HU _pdbx_struct_mod_residue.label_seq_id 7 _pdbx_struct_mod_residue.auth_asym_id C _pdbx_struct_mod_residue.auth_comp_id 5HU _pdbx_struct_mod_residue.auth_seq_id 7 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id DU _pdbx_struct_mod_residue.details ? # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 426 ? A MET 1 2 1 Y 1 A LEU 427 ? A LEU 2 3 1 Y 1 A SER 428 ? A SER 3 4 1 Y 1 A PRO 429 ? A PRO 4 5 1 Y 1 A PRO 430 ? A PRO 5 6 1 Y 1 A ARG 431 ? A ARG 6 7 1 Y 1 A ARG 432 ? A ARG 7 8 1 Y 1 A LYS 433 ? A LYS 8 9 1 Y 1 A ALA 434 ? A ALA 9 10 1 Y 1 A PHE 435 ? A PHE 10 11 1 Y 1 A LYS 436 ? A LYS 11 12 1 Y 1 A LYS 437 ? A LYS 12 13 1 Y 1 A GLU 575 ? A GLU 150 14 1 Y 1 A LYS 576 ? A LYS 151 15 1 Y 1 A LEU 577 ? A LEU 152 16 1 Y 1 A SER 578 ? A SER 153 17 1 Y 1 A LEU 579 ? A LEU 154 18 1 Y 1 A SER 580 ? A SER 155 19 1 Y 1 A HIS 581 ? A HIS 156 20 1 Y 1 A HIS 582 ? A HIS 157 21 1 Y 1 A HIS 583 ? A HIS 158 22 1 Y 1 A HIS 584 ? A HIS 159 23 1 Y 1 A HIS 585 ? A HIS 160 24 1 Y 1 A HIS 586 ? A HIS 161 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 5HU P P N N 1 5HU OP1 O N N 2 5HU OP2 O N N 3 5HU OP3 O N N 4 5HU "O5'" O N N 5 5HU "C5'" C N N 6 5HU "C4'" C N R 7 5HU "O4'" O N N 8 5HU "C3'" C N S 9 5HU "O3'" O N N 10 5HU "C2'" C N N 11 5HU "C1'" C N R 12 5HU N1 N N N 13 5HU C2 C N N 14 5HU O2 O N N 15 5HU N3 N N N 16 5HU C4 C N N 17 5HU O4 O N N 18 5HU C5 C N N 19 5HU C5A C N N 20 5HU C6 C N N 21 5HU O5B O N N 22 5HU HO2P H N N 23 5HU HO3P H N N 24 5HU "H5'" H N N 25 5HU "H5''" H N N 26 5HU "HC4'" H N N 27 5HU "HC3'" H N N 28 5HU "HO3'" H N N 29 5HU "H2'" H N N 30 5HU "H2''" H N N 31 5HU "HC1'" H N N 32 5HU HN3 H N N 33 5HU H5A1 H N N 34 5HU H5A2 H N N 35 5HU HC6 H N N 36 5HU HO5B H N N 37 ALA N N N N 38 ALA CA C N S 39 ALA C C N N 40 ALA O O N N 41 ALA CB C N N 42 ALA OXT O N N 43 ALA H H N N 44 ALA H2 H N N 45 ALA HA H N N 46 ALA HB1 H N N 47 ALA HB2 H N N 48 ALA HB3 H N N 49 ALA HXT H N N 50 ARG N N N N 51 ARG CA C N S 52 ARG C C N N 53 ARG O O N N 54 ARG CB C N N 55 ARG CG C N N 56 ARG CD C N N 57 ARG NE N N N 58 ARG CZ C N N 59 ARG NH1 N N N 60 ARG NH2 N N N 61 ARG OXT O N N 62 ARG H H N N 63 ARG H2 H N N 64 ARG HA H N N 65 ARG HB2 H N N 66 ARG HB3 H N N 67 ARG HG2 H N N 68 ARG HG3 H N N 69 ARG HD2 H N N 70 ARG HD3 H N N 71 ARG HE H N N 72 ARG HH11 H N N 73 ARG HH12 H N N 74 ARG HH21 H N N 75 ARG HH22 H N N 76 ARG HXT H N N 77 ASN N N N N 78 ASN CA C N S 79 ASN C C N N 80 ASN O O N N 81 ASN CB C N N 82 ASN CG C N N 83 ASN OD1 O N N 84 ASN ND2 N N N 85 ASN OXT O N N 86 ASN H H N N 87 ASN H2 H N N 88 ASN HA H N N 89 ASN HB2 H N N 90 ASN HB3 H N N 91 ASN HD21 H N N 92 ASN HD22 H N N 93 ASN HXT H N N 94 ASP N N N N 95 ASP CA C N S 96 ASP C C N N 97 ASP O O N N 98 ASP CB C N N 99 ASP CG C N N 100 ASP OD1 O N N 101 ASP OD2 O N N 102 ASP OXT O N N 103 ASP H H N N 104 ASP H2 H N N 105 ASP HA H N N 106 ASP HB2 H N N 107 ASP HB3 H N N 108 ASP HD2 H N N 109 ASP HXT H N N 110 CYS N N N N 111 CYS CA C N R 112 CYS C C N N 113 CYS O O N N 114 CYS CB C N N 115 CYS SG S N N 116 CYS OXT O N N 117 CYS H H N N 118 CYS H2 H N N 119 CYS HA H N N 120 CYS HB2 H N N 121 CYS HB3 H N N 122 CYS HG H N N 123 CYS HXT H N N 124 DA OP3 O N N 125 DA P P N N 126 DA OP1 O N N 127 DA OP2 O N N 128 DA "O5'" O N N 129 DA "C5'" C N N 130 DA "C4'" C N R 131 DA "O4'" O N N 132 DA "C3'" C N S 133 DA "O3'" O N N 134 DA "C2'" C N N 135 DA "C1'" C N R 136 DA N9 N Y N 137 DA C8 C Y N 138 DA N7 N Y N 139 DA C5 C Y N 140 DA C6 C Y N 141 DA N6 N N N 142 DA N1 N Y N 143 DA C2 C Y N 144 DA N3 N Y N 145 DA C4 C Y N 146 DA HOP3 H N N 147 DA HOP2 H N N 148 DA "H5'" H N N 149 DA "H5''" H N N 150 DA "H4'" H N N 151 DA "H3'" H N N 152 DA "HO3'" H N N 153 DA "H2'" H N N 154 DA "H2''" H N N 155 DA "H1'" H N N 156 DA H8 H N N 157 DA H61 H N N 158 DA H62 H N N 159 DA H2 H N N 160 DC OP3 O N N 161 DC P P N N 162 DC OP1 O N N 163 DC OP2 O N N 164 DC "O5'" O N N 165 DC "C5'" C N N 166 DC "C4'" C N R 167 DC "O4'" O N N 168 DC "C3'" C N S 169 DC "O3'" O N N 170 DC "C2'" C N N 171 DC "C1'" C N R 172 DC N1 N N N 173 DC C2 C N N 174 DC O2 O N N 175 DC N3 N N N 176 DC C4 C N N 177 DC N4 N N N 178 DC C5 C N N 179 DC C6 C N N 180 DC HOP3 H N N 181 DC HOP2 H N N 182 DC "H5'" H N N 183 DC "H5''" H N N 184 DC "H4'" H N N 185 DC "H3'" H N N 186 DC "HO3'" H N N 187 DC "H2'" H N N 188 DC "H2''" H N N 189 DC "H1'" H N N 190 DC H41 H N N 191 DC H42 H N N 192 DC H5 H N N 193 DC H6 H N N 194 DG OP3 O N N 195 DG P P N N 196 DG OP1 O N N 197 DG OP2 O N N 198 DG "O5'" O N N 199 DG "C5'" C N N 200 DG "C4'" C N R 201 DG "O4'" O N N 202 DG "C3'" C N S 203 DG "O3'" O N N 204 DG "C2'" C N N 205 DG "C1'" C N R 206 DG N9 N Y N 207 DG C8 C Y N 208 DG N7 N Y N 209 DG C5 C Y N 210 DG C6 C N N 211 DG O6 O N N 212 DG N1 N N N 213 DG C2 C N N 214 DG N2 N N N 215 DG N3 N N N 216 DG C4 C Y N 217 DG HOP3 H N N 218 DG HOP2 H N N 219 DG "H5'" H N N 220 DG "H5''" H N N 221 DG "H4'" H N N 222 DG "H3'" H N N 223 DG "HO3'" H N N 224 DG "H2'" H N N 225 DG "H2''" H N N 226 DG "H1'" H N N 227 DG H8 H N N 228 DG H1 H N N 229 DG H21 H N N 230 DG H22 H N N 231 DT OP3 O N N 232 DT P P N N 233 DT OP1 O N N 234 DT OP2 O N N 235 DT "O5'" O N N 236 DT "C5'" C N N 237 DT "C4'" C N R 238 DT "O4'" O N N 239 DT "C3'" C N S 240 DT "O3'" O N N 241 DT "C2'" C N N 242 DT "C1'" C N R 243 DT N1 N N N 244 DT C2 C N N 245 DT O2 O N N 246 DT N3 N N N 247 DT C4 C N N 248 DT O4 O N N 249 DT C5 C N N 250 DT C7 C N N 251 DT C6 C N N 252 DT HOP3 H N N 253 DT HOP2 H N N 254 DT "H5'" H N N 255 DT "H5''" H N N 256 DT "H4'" H N N 257 DT "H3'" H N N 258 DT "HO3'" H N N 259 DT "H2'" H N N 260 DT "H2''" H N N 261 DT "H1'" H N N 262 DT H3 H N N 263 DT H71 H N N 264 DT H72 H N N 265 DT H73 H N N 266 DT H6 H N N 267 GLN N N N N 268 GLN CA C N S 269 GLN C C N N 270 GLN O O N N 271 GLN CB C N N 272 GLN CG C N N 273 GLN CD C N N 274 GLN OE1 O N N 275 GLN NE2 N N N 276 GLN OXT O N N 277 GLN H H N N 278 GLN H2 H N N 279 GLN HA H N N 280 GLN HB2 H N N 281 GLN HB3 H N N 282 GLN HG2 H N N 283 GLN HG3 H N N 284 GLN HE21 H N N 285 GLN HE22 H N N 286 GLN HXT H N N 287 GLU N N N N 288 GLU CA C N S 289 GLU C C N N 290 GLU O O N N 291 GLU CB C N N 292 GLU CG C N N 293 GLU CD C N N 294 GLU OE1 O N N 295 GLU OE2 O N N 296 GLU OXT O N N 297 GLU H H N N 298 GLU H2 H N N 299 GLU HA H N N 300 GLU HB2 H N N 301 GLU HB3 H N N 302 GLU HG2 H N N 303 GLU HG3 H N N 304 GLU HE2 H N N 305 GLU HXT H N N 306 GLY N N N N 307 GLY CA C N N 308 GLY C C N N 309 GLY O O N N 310 GLY OXT O N N 311 GLY H H N N 312 GLY H2 H N N 313 GLY HA2 H N N 314 GLY HA3 H N N 315 GLY HXT H N N 316 HIS N N N N 317 HIS CA C N S 318 HIS C C N N 319 HIS O O N N 320 HIS CB C N N 321 HIS CG C Y N 322 HIS ND1 N Y N 323 HIS CD2 C Y N 324 HIS CE1 C Y N 325 HIS NE2 N Y N 326 HIS OXT O N N 327 HIS H H N N 328 HIS H2 H N N 329 HIS HA H N N 330 HIS HB2 H N N 331 HIS HB3 H N N 332 HIS HD1 H N N 333 HIS HD2 H N N 334 HIS HE1 H N N 335 HIS HE2 H N N 336 HIS HXT H N N 337 HOH O O N N 338 HOH H1 H N N 339 HOH H2 H N N 340 ILE N N N N 341 ILE CA C N S 342 ILE C C N N 343 ILE O O N N 344 ILE CB C N S 345 ILE CG1 C N N 346 ILE CG2 C N N 347 ILE CD1 C N N 348 ILE OXT O N N 349 ILE H H N N 350 ILE H2 H N N 351 ILE HA H N N 352 ILE HB H N N 353 ILE HG12 H N N 354 ILE HG13 H N N 355 ILE HG21 H N N 356 ILE HG22 H N N 357 ILE HG23 H N N 358 ILE HD11 H N N 359 ILE HD12 H N N 360 ILE HD13 H N N 361 ILE HXT H N N 362 LEU N N N N 363 LEU CA C N S 364 LEU C C N N 365 LEU O O N N 366 LEU CB C N N 367 LEU CG C N N 368 LEU CD1 C N N 369 LEU CD2 C N N 370 LEU OXT O N N 371 LEU H H N N 372 LEU H2 H N N 373 LEU HA H N N 374 LEU HB2 H N N 375 LEU HB3 H N N 376 LEU HG H N N 377 LEU HD11 H N N 378 LEU HD12 H N N 379 LEU HD13 H N N 380 LEU HD21 H N N 381 LEU HD22 H N N 382 LEU HD23 H N N 383 LEU HXT H N N 384 LYS N N N N 385 LYS CA C N S 386 LYS C C N N 387 LYS O O N N 388 LYS CB C N N 389 LYS CG C N N 390 LYS CD C N N 391 LYS CE C N N 392 LYS NZ N N N 393 LYS OXT O N N 394 LYS H H N N 395 LYS H2 H N N 396 LYS HA H N N 397 LYS HB2 H N N 398 LYS HB3 H N N 399 LYS HG2 H N N 400 LYS HG3 H N N 401 LYS HD2 H N N 402 LYS HD3 H N N 403 LYS HE2 H N N 404 LYS HE3 H N N 405 LYS HZ1 H N N 406 LYS HZ2 H N N 407 LYS HZ3 H N N 408 LYS HXT H N N 409 MET N N N N 410 MET CA C N S 411 MET C C N N 412 MET O O N N 413 MET CB C N N 414 MET CG C N N 415 MET SD S N N 416 MET CE C N N 417 MET OXT O N N 418 MET H H N N 419 MET H2 H N N 420 MET HA H N N 421 MET HB2 H N N 422 MET HB3 H N N 423 MET HG2 H N N 424 MET HG3 H N N 425 MET HE1 H N N 426 MET HE2 H N N 427 MET HE3 H N N 428 MET HXT H N N 429 PHE N N N N 430 PHE CA C N S 431 PHE C C N N 432 PHE O O N N 433 PHE CB C N N 434 PHE CG C Y N 435 PHE CD1 C Y N 436 PHE CD2 C Y N 437 PHE CE1 C Y N 438 PHE CE2 C Y N 439 PHE CZ C Y N 440 PHE OXT O N N 441 PHE H H N N 442 PHE H2 H N N 443 PHE HA H N N 444 PHE HB2 H N N 445 PHE HB3 H N N 446 PHE HD1 H N N 447 PHE HD2 H N N 448 PHE HE1 H N N 449 PHE HE2 H N N 450 PHE HZ H N N 451 PHE HXT H N N 452 PRO N N N N 453 PRO CA C N S 454 PRO C C N N 455 PRO O O N N 456 PRO CB C N N 457 PRO CG C N N 458 PRO CD C N N 459 PRO OXT O N N 460 PRO H H N N 461 PRO HA H N N 462 PRO HB2 H N N 463 PRO HB3 H N N 464 PRO HG2 H N N 465 PRO HG3 H N N 466 PRO HD2 H N N 467 PRO HD3 H N N 468 PRO HXT H N N 469 SER N N N N 470 SER CA C N S 471 SER C C N N 472 SER O O N N 473 SER CB C N N 474 SER OG O N N 475 SER OXT O N N 476 SER H H N N 477 SER H2 H N N 478 SER HA H N N 479 SER HB2 H N N 480 SER HB3 H N N 481 SER HG H N N 482 SER HXT H N N 483 THR N N N N 484 THR CA C N S 485 THR C C N N 486 THR O O N N 487 THR CB C N R 488 THR OG1 O N N 489 THR CG2 C N N 490 THR OXT O N N 491 THR H H N N 492 THR H2 H N N 493 THR HA H N N 494 THR HB H N N 495 THR HG1 H N N 496 THR HG21 H N N 497 THR HG22 H N N 498 THR HG23 H N N 499 THR HXT H N N 500 TRP N N N N 501 TRP CA C N S 502 TRP C C N N 503 TRP O O N N 504 TRP CB C N N 505 TRP CG C Y N 506 TRP CD1 C Y N 507 TRP CD2 C Y N 508 TRP NE1 N Y N 509 TRP CE2 C Y N 510 TRP CE3 C Y N 511 TRP CZ2 C Y N 512 TRP CZ3 C Y N 513 TRP CH2 C Y N 514 TRP OXT O N N 515 TRP H H N N 516 TRP H2 H N N 517 TRP HA H N N 518 TRP HB2 H N N 519 TRP HB3 H N N 520 TRP HD1 H N N 521 TRP HE1 H N N 522 TRP HE3 H N N 523 TRP HZ2 H N N 524 TRP HZ3 H N N 525 TRP HH2 H N N 526 TRP HXT H N N 527 TYR N N N N 528 TYR CA C N S 529 TYR C C N N 530 TYR O O N N 531 TYR CB C N N 532 TYR CG C Y N 533 TYR CD1 C Y N 534 TYR CD2 C Y N 535 TYR CE1 C Y N 536 TYR CE2 C Y N 537 TYR CZ C Y N 538 TYR OH O N N 539 TYR OXT O N N 540 TYR H H N N 541 TYR H2 H N N 542 TYR HA H N N 543 TYR HB2 H N N 544 TYR HB3 H N N 545 TYR HD1 H N N 546 TYR HD2 H N N 547 TYR HE1 H N N 548 TYR HE2 H N N 549 TYR HH H N N 550 TYR HXT H N N 551 VAL N N N N 552 VAL CA C N S 553 VAL C C N N 554 VAL O O N N 555 VAL CB C N N 556 VAL CG1 C N N 557 VAL CG2 C N N 558 VAL OXT O N N 559 VAL H H N N 560 VAL H2 H N N 561 VAL HA H N N 562 VAL HB H N N 563 VAL HG11 H N N 564 VAL HG12 H N N 565 VAL HG13 H N N 566 VAL HG21 H N N 567 VAL HG22 H N N 568 VAL HG23 H N N 569 VAL HXT H N N 570 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 5HU P OP1 doub N N 1 5HU P OP2 sing N N 2 5HU P OP3 sing N N 3 5HU P "O5'" sing N N 4 5HU OP2 HO2P sing N N 5 5HU OP3 HO3P sing N N 6 5HU "O5'" "C5'" sing N N 7 5HU "C5'" "C4'" sing N N 8 5HU "C5'" "H5'" sing N N 9 5HU "C5'" "H5''" sing N N 10 5HU "C4'" "O4'" sing N N 11 5HU "C4'" "C3'" sing N N 12 5HU "C4'" "HC4'" sing N N 13 5HU "O4'" "C1'" sing N N 14 5HU "C3'" "O3'" sing N N 15 5HU "C3'" "C2'" sing N N 16 5HU "C3'" "HC3'" sing N N 17 5HU "O3'" "HO3'" sing N N 18 5HU "C2'" "C1'" sing N N 19 5HU "C2'" "H2'" sing N N 20 5HU "C2'" "H2''" sing N N 21 5HU "C1'" N1 sing N N 22 5HU "C1'" "HC1'" sing N N 23 5HU N1 C2 sing N N 24 5HU N1 C6 sing N N 25 5HU C2 O2 doub N N 26 5HU C2 N3 sing N N 27 5HU N3 C4 sing N N 28 5HU N3 HN3 sing N N 29 5HU C4 O4 doub N N 30 5HU C4 C5 sing N N 31 5HU C5 C5A sing N N 32 5HU C5 C6 doub N N 33 5HU C5A O5B sing N N 34 5HU C5A H5A1 sing N N 35 5HU C5A H5A2 sing N N 36 5HU C6 HC6 sing N N 37 5HU O5B HO5B sing N N 38 ALA N CA sing N N 39 ALA N H sing N N 40 ALA N H2 sing N N 41 ALA CA C sing N N 42 ALA CA CB sing N N 43 ALA CA HA sing N N 44 ALA C O doub N N 45 ALA C OXT sing N N 46 ALA CB HB1 sing N N 47 ALA CB HB2 sing N N 48 ALA CB HB3 sing N N 49 ALA OXT HXT sing N N 50 ARG N CA sing N N 51 ARG N H sing N N 52 ARG N H2 sing N N 53 ARG CA C sing N N 54 ARG CA CB sing N N 55 ARG CA HA sing N N 56 ARG C O doub N N 57 ARG C OXT sing N N 58 ARG CB CG sing N N 59 ARG CB HB2 sing N N 60 ARG CB HB3 sing N N 61 ARG CG CD sing N N 62 ARG CG HG2 sing N N 63 ARG CG HG3 sing N N 64 ARG CD NE sing N N 65 ARG CD HD2 sing N N 66 ARG CD HD3 sing N N 67 ARG NE CZ sing N N 68 ARG NE HE sing N N 69 ARG CZ NH1 sing N N 70 ARG CZ NH2 doub N N 71 ARG NH1 HH11 sing N N 72 ARG NH1 HH12 sing N N 73 ARG NH2 HH21 sing N N 74 ARG NH2 HH22 sing N N 75 ARG OXT HXT sing N N 76 ASN N CA sing N N 77 ASN N H sing N N 78 ASN N H2 sing N N 79 ASN CA C sing N N 80 ASN CA CB sing N N 81 ASN CA HA sing N N 82 ASN C O doub N N 83 ASN C OXT sing N N 84 ASN CB CG sing N N 85 ASN CB HB2 sing N N 86 ASN CB HB3 sing N N 87 ASN CG OD1 doub N N 88 ASN CG ND2 sing N N 89 ASN ND2 HD21 sing N N 90 ASN ND2 HD22 sing N N 91 ASN OXT HXT sing N N 92 ASP N CA sing N N 93 ASP N H sing N N 94 ASP N H2 sing N N 95 ASP CA C sing N N 96 ASP CA CB sing N N 97 ASP CA HA sing N N 98 ASP C O doub N N 99 ASP C OXT sing N N 100 ASP CB CG sing N N 101 ASP CB HB2 sing N N 102 ASP CB HB3 sing N N 103 ASP CG OD1 doub N N 104 ASP CG OD2 sing N N 105 ASP OD2 HD2 sing N N 106 ASP OXT HXT sing N N 107 CYS N CA sing N N 108 CYS N H sing N N 109 CYS N H2 sing N N 110 CYS CA C sing N N 111 CYS CA CB sing N N 112 CYS CA HA sing N N 113 CYS C O doub N N 114 CYS C OXT sing N N 115 CYS CB SG sing N N 116 CYS CB HB2 sing N N 117 CYS CB HB3 sing N N 118 CYS SG HG sing N N 119 CYS OXT HXT sing N N 120 DA OP3 P sing N N 121 DA OP3 HOP3 sing N N 122 DA P OP1 doub N N 123 DA P OP2 sing N N 124 DA P "O5'" sing N N 125 DA OP2 HOP2 sing N N 126 DA "O5'" "C5'" sing N N 127 DA "C5'" "C4'" sing N N 128 DA "C5'" "H5'" sing N N 129 DA "C5'" "H5''" sing N N 130 DA "C4'" "O4'" sing N N 131 DA "C4'" "C3'" sing N N 132 DA "C4'" "H4'" sing N N 133 DA "O4'" "C1'" sing N N 134 DA "C3'" "O3'" sing N N 135 DA "C3'" "C2'" sing N N 136 DA "C3'" "H3'" sing N N 137 DA "O3'" "HO3'" sing N N 138 DA "C2'" "C1'" sing N N 139 DA "C2'" "H2'" sing N N 140 DA "C2'" "H2''" sing N N 141 DA "C1'" N9 sing N N 142 DA "C1'" "H1'" sing N N 143 DA N9 C8 sing Y N 144 DA N9 C4 sing Y N 145 DA C8 N7 doub Y N 146 DA C8 H8 sing N N 147 DA N7 C5 sing Y N 148 DA C5 C6 sing Y N 149 DA C5 C4 doub Y N 150 DA C6 N6 sing N N 151 DA C6 N1 doub Y N 152 DA N6 H61 sing N N 153 DA N6 H62 sing N N 154 DA N1 C2 sing Y N 155 DA C2 N3 doub Y N 156 DA C2 H2 sing N N 157 DA N3 C4 sing Y N 158 DC OP3 P sing N N 159 DC OP3 HOP3 sing N N 160 DC P OP1 doub N N 161 DC P OP2 sing N N 162 DC P "O5'" sing N N 163 DC OP2 HOP2 sing N N 164 DC "O5'" "C5'" sing N N 165 DC "C5'" "C4'" sing N N 166 DC "C5'" "H5'" sing N N 167 DC "C5'" "H5''" sing N N 168 DC "C4'" "O4'" sing N N 169 DC "C4'" "C3'" sing N N 170 DC "C4'" "H4'" sing N N 171 DC "O4'" "C1'" sing N N 172 DC "C3'" "O3'" sing N N 173 DC "C3'" "C2'" sing N N 174 DC "C3'" "H3'" sing N N 175 DC "O3'" "HO3'" sing N N 176 DC "C2'" "C1'" sing N N 177 DC "C2'" "H2'" sing N N 178 DC "C2'" "H2''" sing N N 179 DC "C1'" N1 sing N N 180 DC "C1'" "H1'" sing N N 181 DC N1 C2 sing N N 182 DC N1 C6 sing N N 183 DC C2 O2 doub N N 184 DC C2 N3 sing N N 185 DC N3 C4 doub N N 186 DC C4 N4 sing N N 187 DC C4 C5 sing N N 188 DC N4 H41 sing N N 189 DC N4 H42 sing N N 190 DC C5 C6 doub N N 191 DC C5 H5 sing N N 192 DC C6 H6 sing N N 193 DG OP3 P sing N N 194 DG OP3 HOP3 sing N N 195 DG P OP1 doub N N 196 DG P OP2 sing N N 197 DG P "O5'" sing N N 198 DG OP2 HOP2 sing N N 199 DG "O5'" "C5'" sing N N 200 DG "C5'" "C4'" sing N N 201 DG "C5'" "H5'" sing N N 202 DG "C5'" "H5''" sing N N 203 DG "C4'" "O4'" sing N N 204 DG "C4'" "C3'" sing N N 205 DG "C4'" "H4'" sing N N 206 DG "O4'" "C1'" sing N N 207 DG "C3'" "O3'" sing N N 208 DG "C3'" "C2'" sing N N 209 DG "C3'" "H3'" sing N N 210 DG "O3'" "HO3'" sing N N 211 DG "C2'" "C1'" sing N N 212 DG "C2'" "H2'" sing N N 213 DG "C2'" "H2''" sing N N 214 DG "C1'" N9 sing N N 215 DG "C1'" "H1'" sing N N 216 DG N9 C8 sing Y N 217 DG N9 C4 sing Y N 218 DG C8 N7 doub Y N 219 DG C8 H8 sing N N 220 DG N7 C5 sing Y N 221 DG C5 C6 sing N N 222 DG C5 C4 doub Y N 223 DG C6 O6 doub N N 224 DG C6 N1 sing N N 225 DG N1 C2 sing N N 226 DG N1 H1 sing N N 227 DG C2 N2 sing N N 228 DG C2 N3 doub N N 229 DG N2 H21 sing N N 230 DG N2 H22 sing N N 231 DG N3 C4 sing N N 232 DT OP3 P sing N N 233 DT OP3 HOP3 sing N N 234 DT P OP1 doub N N 235 DT P OP2 sing N N 236 DT P "O5'" sing N N 237 DT OP2 HOP2 sing N N 238 DT "O5'" "C5'" sing N N 239 DT "C5'" "C4'" sing N N 240 DT "C5'" "H5'" sing N N 241 DT "C5'" "H5''" sing N N 242 DT "C4'" "O4'" sing N N 243 DT "C4'" "C3'" sing N N 244 DT "C4'" "H4'" sing N N 245 DT "O4'" "C1'" sing N N 246 DT "C3'" "O3'" sing N N 247 DT "C3'" "C2'" sing N N 248 DT "C3'" "H3'" sing N N 249 DT "O3'" "HO3'" sing N N 250 DT "C2'" "C1'" sing N N 251 DT "C2'" "H2'" sing N N 252 DT "C2'" "H2''" sing N N 253 DT "C1'" N1 sing N N 254 DT "C1'" "H1'" sing N N 255 DT N1 C2 sing N N 256 DT N1 C6 sing N N 257 DT C2 O2 doub N N 258 DT C2 N3 sing N N 259 DT N3 C4 sing N N 260 DT N3 H3 sing N N 261 DT C4 O4 doub N N 262 DT C4 C5 sing N N 263 DT C5 C7 sing N N 264 DT C5 C6 doub N N 265 DT C7 H71 sing N N 266 DT C7 H72 sing N N 267 DT C7 H73 sing N N 268 DT C6 H6 sing N N 269 GLN N CA sing N N 270 GLN N H sing N N 271 GLN N H2 sing N N 272 GLN CA C sing N N 273 GLN CA CB sing N N 274 GLN CA HA sing N N 275 GLN C O doub N N 276 GLN C OXT sing N N 277 GLN CB CG sing N N 278 GLN CB HB2 sing N N 279 GLN CB HB3 sing N N 280 GLN CG CD sing N N 281 GLN CG HG2 sing N N 282 GLN CG HG3 sing N N 283 GLN CD OE1 doub N N 284 GLN CD NE2 sing N N 285 GLN NE2 HE21 sing N N 286 GLN NE2 HE22 sing N N 287 GLN OXT HXT sing N N 288 GLU N CA sing N N 289 GLU N H sing N N 290 GLU N H2 sing N N 291 GLU CA C sing N N 292 GLU CA CB sing N N 293 GLU CA HA sing N N 294 GLU C O doub N N 295 GLU C OXT sing N N 296 GLU CB CG sing N N 297 GLU CB HB2 sing N N 298 GLU CB HB3 sing N N 299 GLU CG CD sing N N 300 GLU CG HG2 sing N N 301 GLU CG HG3 sing N N 302 GLU CD OE1 doub N N 303 GLU CD OE2 sing N N 304 GLU OE2 HE2 sing N N 305 GLU OXT HXT sing N N 306 GLY N CA sing N N 307 GLY N H sing N N 308 GLY N H2 sing N N 309 GLY CA C sing N N 310 GLY CA HA2 sing N N 311 GLY CA HA3 sing N N 312 GLY C O doub N N 313 GLY C OXT sing N N 314 GLY OXT HXT sing N N 315 HIS N CA sing N N 316 HIS N H sing N N 317 HIS N H2 sing N N 318 HIS CA C sing N N 319 HIS CA CB sing N N 320 HIS CA HA sing N N 321 HIS C O doub N N 322 HIS C OXT sing N N 323 HIS CB CG sing N N 324 HIS CB HB2 sing N N 325 HIS CB HB3 sing N N 326 HIS CG ND1 sing Y N 327 HIS CG CD2 doub Y N 328 HIS ND1 CE1 doub Y N 329 HIS ND1 HD1 sing N N 330 HIS CD2 NE2 sing Y N 331 HIS CD2 HD2 sing N N 332 HIS CE1 NE2 sing Y N 333 HIS CE1 HE1 sing N N 334 HIS NE2 HE2 sing N N 335 HIS OXT HXT sing N N 336 HOH O H1 sing N N 337 HOH O H2 sing N N 338 ILE N CA sing N N 339 ILE N H sing N N 340 ILE N H2 sing N N 341 ILE CA C sing N N 342 ILE CA CB sing N N 343 ILE CA HA sing N N 344 ILE C O doub N N 345 ILE C OXT sing N N 346 ILE CB CG1 sing N N 347 ILE CB CG2 sing N N 348 ILE CB HB sing N N 349 ILE CG1 CD1 sing N N 350 ILE CG1 HG12 sing N N 351 ILE CG1 HG13 sing N N 352 ILE CG2 HG21 sing N N 353 ILE CG2 HG22 sing N N 354 ILE CG2 HG23 sing N N 355 ILE CD1 HD11 sing N N 356 ILE CD1 HD12 sing N N 357 ILE CD1 HD13 sing N N 358 ILE OXT HXT sing N N 359 LEU N CA sing N N 360 LEU N H sing N N 361 LEU N H2 sing N N 362 LEU CA C sing N N 363 LEU CA CB sing N N 364 LEU CA HA sing N N 365 LEU C O doub N N 366 LEU C OXT sing N N 367 LEU CB CG sing N N 368 LEU CB HB2 sing N N 369 LEU CB HB3 sing N N 370 LEU CG CD1 sing N N 371 LEU CG CD2 sing N N 372 LEU CG HG sing N N 373 LEU CD1 HD11 sing N N 374 LEU CD1 HD12 sing N N 375 LEU CD1 HD13 sing N N 376 LEU CD2 HD21 sing N N 377 LEU CD2 HD22 sing N N 378 LEU CD2 HD23 sing N N 379 LEU OXT HXT sing N N 380 LYS N CA sing N N 381 LYS N H sing N N 382 LYS N H2 sing N N 383 LYS CA C sing N N 384 LYS CA CB sing N N 385 LYS CA HA sing N N 386 LYS C O doub N N 387 LYS C OXT sing N N 388 LYS CB CG sing N N 389 LYS CB HB2 sing N N 390 LYS CB HB3 sing N N 391 LYS CG CD sing N N 392 LYS CG HG2 sing N N 393 LYS CG HG3 sing N N 394 LYS CD CE sing N N 395 LYS CD HD2 sing N N 396 LYS CD HD3 sing N N 397 LYS CE NZ sing N N 398 LYS CE HE2 sing N N 399 LYS CE HE3 sing N N 400 LYS NZ HZ1 sing N N 401 LYS NZ HZ2 sing N N 402 LYS NZ HZ3 sing N N 403 LYS OXT HXT sing N N 404 MET N CA sing N N 405 MET N H sing N N 406 MET N H2 sing N N 407 MET CA C sing N N 408 MET CA CB sing N N 409 MET CA HA sing N N 410 MET C O doub N N 411 MET C OXT sing N N 412 MET CB CG sing N N 413 MET CB HB2 sing N N 414 MET CB HB3 sing N N 415 MET CG SD sing N N 416 MET CG HG2 sing N N 417 MET CG HG3 sing N N 418 MET SD CE sing N N 419 MET CE HE1 sing N N 420 MET CE HE2 sing N N 421 MET CE HE3 sing N N 422 MET OXT HXT sing N N 423 PHE N CA sing N N 424 PHE N H sing N N 425 PHE N H2 sing N N 426 PHE CA C sing N N 427 PHE CA CB sing N N 428 PHE CA HA sing N N 429 PHE C O doub N N 430 PHE C OXT sing N N 431 PHE CB CG sing N N 432 PHE CB HB2 sing N N 433 PHE CB HB3 sing N N 434 PHE CG CD1 doub Y N 435 PHE CG CD2 sing Y N 436 PHE CD1 CE1 sing Y N 437 PHE CD1 HD1 sing N N 438 PHE CD2 CE2 doub Y N 439 PHE CD2 HD2 sing N N 440 PHE CE1 CZ doub Y N 441 PHE CE1 HE1 sing N N 442 PHE CE2 CZ sing Y N 443 PHE CE2 HE2 sing N N 444 PHE CZ HZ sing N N 445 PHE OXT HXT sing N N 446 PRO N CA sing N N 447 PRO N CD sing N N 448 PRO N H sing N N 449 PRO CA C sing N N 450 PRO CA CB sing N N 451 PRO CA HA sing N N 452 PRO C O doub N N 453 PRO C OXT sing N N 454 PRO CB CG sing N N 455 PRO CB HB2 sing N N 456 PRO CB HB3 sing N N 457 PRO CG CD sing N N 458 PRO CG HG2 sing N N 459 PRO CG HG3 sing N N 460 PRO CD HD2 sing N N 461 PRO CD HD3 sing N N 462 PRO OXT HXT sing N N 463 SER N CA sing N N 464 SER N H sing N N 465 SER N H2 sing N N 466 SER CA C sing N N 467 SER CA CB sing N N 468 SER CA HA sing N N 469 SER C O doub N N 470 SER C OXT sing N N 471 SER CB OG sing N N 472 SER CB HB2 sing N N 473 SER CB HB3 sing N N 474 SER OG HG sing N N 475 SER OXT HXT sing N N 476 THR N CA sing N N 477 THR N H sing N N 478 THR N H2 sing N N 479 THR CA C sing N N 480 THR CA CB sing N N 481 THR CA HA sing N N 482 THR C O doub N N 483 THR C OXT sing N N 484 THR CB OG1 sing N N 485 THR CB CG2 sing N N 486 THR CB HB sing N N 487 THR OG1 HG1 sing N N 488 THR CG2 HG21 sing N N 489 THR CG2 HG22 sing N N 490 THR CG2 HG23 sing N N 491 THR OXT HXT sing N N 492 TRP N CA sing N N 493 TRP N H sing N N 494 TRP N H2 sing N N 495 TRP CA C sing N N 496 TRP CA CB sing N N 497 TRP CA HA sing N N 498 TRP C O doub N N 499 TRP C OXT sing N N 500 TRP CB CG sing N N 501 TRP CB HB2 sing N N 502 TRP CB HB3 sing N N 503 TRP CG CD1 doub Y N 504 TRP CG CD2 sing Y N 505 TRP CD1 NE1 sing Y N 506 TRP CD1 HD1 sing N N 507 TRP CD2 CE2 doub Y N 508 TRP CD2 CE3 sing Y N 509 TRP NE1 CE2 sing Y N 510 TRP NE1 HE1 sing N N 511 TRP CE2 CZ2 sing Y N 512 TRP CE3 CZ3 doub Y N 513 TRP CE3 HE3 sing N N 514 TRP CZ2 CH2 doub Y N 515 TRP CZ2 HZ2 sing N N 516 TRP CZ3 CH2 sing Y N 517 TRP CZ3 HZ3 sing N N 518 TRP CH2 HH2 sing N N 519 TRP OXT HXT sing N N 520 TYR N CA sing N N 521 TYR N H sing N N 522 TYR N H2 sing N N 523 TYR CA C sing N N 524 TYR CA CB sing N N 525 TYR CA HA sing N N 526 TYR C O doub N N 527 TYR C OXT sing N N 528 TYR CB CG sing N N 529 TYR CB HB2 sing N N 530 TYR CB HB3 sing N N 531 TYR CG CD1 doub Y N 532 TYR CG CD2 sing Y N 533 TYR CD1 CE1 sing Y N 534 TYR CD1 HD1 sing N N 535 TYR CD2 CE2 doub Y N 536 TYR CD2 HD2 sing N N 537 TYR CE1 CZ doub Y N 538 TYR CE1 HE1 sing N N 539 TYR CE2 CZ sing Y N 540 TYR CE2 HE2 sing N N 541 TYR CZ OH sing N N 542 TYR OH HH sing N N 543 TYR OXT HXT sing N N 544 VAL N CA sing N N 545 VAL N H sing N N 546 VAL N H2 sing N N 547 VAL CA C sing N N 548 VAL CA CB sing N N 549 VAL CA HA sing N N 550 VAL C O doub N N 551 VAL C OXT sing N N 552 VAL CB CG1 sing N N 553 VAL CB CG2 sing N N 554 VAL CB HB sing N N 555 VAL CG1 HG11 sing N N 556 VAL CG1 HG12 sing N N 557 VAL CG1 HG13 sing N N 558 VAL CG2 HG21 sing N N 559 VAL CG2 HG22 sing N N 560 VAL CG2 HG23 sing N N 561 VAL OXT HXT sing N N 562 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 4E9H 'b-form double helix' 4E9H 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B DC 1 1_555 C DG 12 1_555 0.230 -0.370 0.088 -16.604 -8.462 -3.520 1 C_DC1:DG12_D C 1 ? D 12 ? 19 1 1 B DC 2 1_555 C DG 11 1_555 0.816 -0.496 0.143 -9.218 -6.198 -0.138 2 C_DC2:DG11_D C 2 ? D 11 ? 19 1 1 B DA 3 1_555 C DT 10 1_555 0.512 -0.319 0.229 8.764 -6.060 -4.052 3 C_DA3:DT10_D C 3 ? D 10 ? 20 1 1 B DG 4 1_555 C DC 9 1_555 0.328 -0.419 0.044 3.855 -14.021 -3.546 4 C_DG4:DC9_D C 4 ? D 9 ? 19 1 1 B DC 5 1_555 C DG 8 1_555 0.241 -0.255 -0.063 -2.359 -10.933 1.769 5 C_DC5:DG8_D C 5 ? D 8 ? 19 1 1 B DG 6 1_555 C DC 7 1_555 -0.153 -0.291 0.593 8.582 -9.000 -4.282 6 C_DG6:DC7_D C 6 ? D 7 ? 19 1 1 B DG 8 1_555 C DC 5 1_555 -0.824 -0.309 -0.684 -19.146 -3.799 -3.512 7 C_DG8:DC5_D C 8 ? D 5 ? 19 1 1 B DC 9 1_555 C DG 4 1_555 -0.432 -0.195 0.021 -0.288 -0.038 -5.443 8 C_DC9:DG4_D C 9 ? D 4 ? 19 1 1 B DA 10 1_555 C DT 3 1_555 -0.045 -0.171 -0.437 12.597 -11.784 -1.537 9 C_DA10:DT3_D C 10 ? D 3 ? 20 1 1 B DG 11 1_555 C DC 2 1_555 0.217 -0.229 0.250 10.380 -15.475 -2.999 10 C_DG11:DC2_D C 11 ? D 2 ? 19 1 1 B DC 12 1_555 C DG 1 1_555 -0.446 -0.112 -0.697 10.096 1.742 -10.326 11 C_DC12:DG1_D C 12 ? D 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B DC 1 1_555 C DG 12 1_555 B DC 2 1_555 C DG 11 1_555 0.864 -0.133 3.204 3.341 2.094 37.933 -0.466 -0.905 3.254 3.210 -5.123 38.130 1 CC_DC1DC2:DG11DG12_DD C 1 ? D 12 ? C 2 ? D 11 ? 1 B DC 2 1_555 C DG 11 1_555 B DA 3 1_555 C DT 10 1_555 -0.560 0.958 3.085 1.043 2.530 27.437 1.421 1.418 3.136 5.316 -2.192 27.570 2 CC_DC2DA3:DT10DG11_DD C 2 ? D 11 ? C 3 ? D 10 ? 1 B DA 3 1_555 C DT 10 1_555 B DG 4 1_555 C DC 9 1_555 -0.596 -0.069 3.512 -0.631 4.971 35.407 -0.882 0.873 3.481 8.123 1.031 35.749 3 CC_DA3DG4:DC9DT10_DD C 3 ? D 10 ? C 4 ? D 9 ? 1 B DG 4 1_555 C DC 9 1_555 B DC 5 1_555 C DG 8 1_555 1.070 -0.127 3.414 4.931 -1.865 36.374 0.070 -0.980 3.526 -2.968 -7.849 36.742 4 CC_DG4DC5:DG8DC9_DD C 4 ? D 9 ? C 5 ? D 8 ? 1 B DC 5 1_555 C DG 8 1_555 B DG 6 1_555 C DC 7 1_555 -0.762 0.713 3.277 -6.979 0.261 35.552 1.109 0.221 3.367 0.422 11.295 36.209 5 CC_DC5DG6:DC7DG8_DD C 5 ? D 8 ? C 6 ? D 7 ? 1 B DG 8 1_555 C DC 5 1_555 B DC 9 1_555 C DG 4 1_555 -0.545 0.058 2.752 -7.137 3.308 27.773 -0.521 -0.280 2.790 6.722 14.504 28.844 6 CC_DG8DC9:DG4DC5_DD C 8 ? D 5 ? C 9 ? D 4 ? 1 B DC 9 1_555 C DG 4 1_555 B DA 10 1_555 C DT 3 1_555 0.319 0.773 3.143 6.161 8.718 37.592 0.109 0.263 3.246 13.206 -9.332 39.026 7 CC_DC9DA10:DT3DG4_DD C 9 ? D 4 ? C 10 ? D 3 ? 1 B DA 10 1_555 C DT 3 1_555 B DG 11 1_555 C DC 2 1_555 0.122 0.393 3.487 -3.978 6.193 32.549 -0.421 -0.924 3.463 10.876 6.987 33.349 8 CC_DA10DG11:DC2DT3_DD C 10 ? D 3 ? C 11 ? D 2 ? 1 B DG 11 1_555 C DC 2 1_555 B DC 12 1_555 C DG 1 1_555 0.308 -0.649 3.675 2.791 -1.153 32.803 -0.922 -0.006 3.708 -2.036 -4.929 32.938 9 CC_DG11DC12:DG1DC2_DD C 11 ? D 2 ? C 12 ? D 1 ? # _atom_sites.entry_id 4E9H _atom_sites.fract_transf_matrix[1][1] 0.024337 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.010341 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.018149 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_