data_4E9K # _entry.id 4E9K # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4E9K pdb_00004e9k 10.2210/pdb4e9k/pdb RCSB RCSB071340 ? ? WWPDB D_1000071340 ? ? # _pdbx_database_related.db_name TargetTrack _pdbx_database_related.db_id JCSG-416975 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 4E9K _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2012-03-21 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Crystal structure of a hypothetical protein (BACOVA_04221) from Bacteroides ovatus ATCC 8483 at 2.31 A resolution' _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # _citation_author.citation_id primary _citation_author.name 'Joint Center for Structural Genomics (JCSG)' _citation_author.ordinal 1 _citation_author.identifier_ORCID ? # _cell.entry_id 4E9K _cell.length_a 93.156 _cell.length_b 93.156 _cell.length_c 103.109 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 8 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4E9K _symmetry.Int_Tables_number 91 _symmetry.space_group_name_H-M 'P 41 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'hypothetical protein' 27453.521 1 ? ? ? ? 2 non-polymer syn 'SULFATE ION' 96.063 4 ? ? ? ? 3 water nat water 18.015 92 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GDDTKTYILSLPNYETHTLD(MSE)GDQENPDDSWSVSSEWGTTNYKYNLLTDASGIFEFDCVSSTYGFYSDSFAFTNCT VEDCPDFASYDYRAITKKGVINNTYVIVGAAGYKIGKNSDKEAAIRFRDHDNPNELEDYRVKGLYVTNSVYAYSS(MSE) KEGTGYYGEEEIFGSNDSFKLTIYNYDKT(MSE)HVDCYLAEGTNLLDQWKWVDLTSLGETKGLKFSLTSTKKNEYGPLT PTYFCLDGITIED ; _entity_poly.pdbx_seq_one_letter_code_can ;GDDTKTYILSLPNYETHTLDMGDQENPDDSWSVSSEWGTTNYKYNLLTDASGIFEFDCVSSTYGFYSDSFAFTNCTVEDC PDFASYDYRAITKKGVINNTYVIVGAAGYKIGKNSDKEAAIRFRDHDNPNELEDYRVKGLYVTNSVYAYSSMKEGTGYYG EEEIFGSNDSFKLTIYNYDKTMHVDCYLAEGTNLLDQWKWVDLTSLGETKGLKFSLTSTKKNEYGPLTPTYFCLDGITIE D ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier JCSG-416975 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 ASP n 1 3 ASP n 1 4 THR n 1 5 LYS n 1 6 THR n 1 7 TYR n 1 8 ILE n 1 9 LEU n 1 10 SER n 1 11 LEU n 1 12 PRO n 1 13 ASN n 1 14 TYR n 1 15 GLU n 1 16 THR n 1 17 HIS n 1 18 THR n 1 19 LEU n 1 20 ASP n 1 21 MSE n 1 22 GLY n 1 23 ASP n 1 24 GLN n 1 25 GLU n 1 26 ASN n 1 27 PRO n 1 28 ASP n 1 29 ASP n 1 30 SER n 1 31 TRP n 1 32 SER n 1 33 VAL n 1 34 SER n 1 35 SER n 1 36 GLU n 1 37 TRP n 1 38 GLY n 1 39 THR n 1 40 THR n 1 41 ASN n 1 42 TYR n 1 43 LYS n 1 44 TYR n 1 45 ASN n 1 46 LEU n 1 47 LEU n 1 48 THR n 1 49 ASP n 1 50 ALA n 1 51 SER n 1 52 GLY n 1 53 ILE n 1 54 PHE n 1 55 GLU n 1 56 PHE n 1 57 ASP n 1 58 CYS n 1 59 VAL n 1 60 SER n 1 61 SER n 1 62 THR n 1 63 TYR n 1 64 GLY n 1 65 PHE n 1 66 TYR n 1 67 SER n 1 68 ASP n 1 69 SER n 1 70 PHE n 1 71 ALA n 1 72 PHE n 1 73 THR n 1 74 ASN n 1 75 CYS n 1 76 THR n 1 77 VAL n 1 78 GLU n 1 79 ASP n 1 80 CYS n 1 81 PRO n 1 82 ASP n 1 83 PHE n 1 84 ALA n 1 85 SER n 1 86 TYR n 1 87 ASP n 1 88 TYR n 1 89 ARG n 1 90 ALA n 1 91 ILE n 1 92 THR n 1 93 LYS n 1 94 LYS n 1 95 GLY n 1 96 VAL n 1 97 ILE n 1 98 ASN n 1 99 ASN n 1 100 THR n 1 101 TYR n 1 102 VAL n 1 103 ILE n 1 104 VAL n 1 105 GLY n 1 106 ALA n 1 107 ALA n 1 108 GLY n 1 109 TYR n 1 110 LYS n 1 111 ILE n 1 112 GLY n 1 113 LYS n 1 114 ASN n 1 115 SER n 1 116 ASP n 1 117 LYS n 1 118 GLU n 1 119 ALA n 1 120 ALA n 1 121 ILE n 1 122 ARG n 1 123 PHE n 1 124 ARG n 1 125 ASP n 1 126 HIS n 1 127 ASP n 1 128 ASN n 1 129 PRO n 1 130 ASN n 1 131 GLU n 1 132 LEU n 1 133 GLU n 1 134 ASP n 1 135 TYR n 1 136 ARG n 1 137 VAL n 1 138 LYS n 1 139 GLY n 1 140 LEU n 1 141 TYR n 1 142 VAL n 1 143 THR n 1 144 ASN n 1 145 SER n 1 146 VAL n 1 147 TYR n 1 148 ALA n 1 149 TYR n 1 150 SER n 1 151 SER n 1 152 MSE n 1 153 LYS n 1 154 GLU n 1 155 GLY n 1 156 THR n 1 157 GLY n 1 158 TYR n 1 159 TYR n 1 160 GLY n 1 161 GLU n 1 162 GLU n 1 163 GLU n 1 164 ILE n 1 165 PHE n 1 166 GLY n 1 167 SER n 1 168 ASN n 1 169 ASP n 1 170 SER n 1 171 PHE n 1 172 LYS n 1 173 LEU n 1 174 THR n 1 175 ILE n 1 176 TYR n 1 177 ASN n 1 178 TYR n 1 179 ASP n 1 180 LYS n 1 181 THR n 1 182 MSE n 1 183 HIS n 1 184 VAL n 1 185 ASP n 1 186 CYS n 1 187 TYR n 1 188 LEU n 1 189 ALA n 1 190 GLU n 1 191 GLY n 1 192 THR n 1 193 ASN n 1 194 LEU n 1 195 LEU n 1 196 ASP n 1 197 GLN n 1 198 TRP n 1 199 LYS n 1 200 TRP n 1 201 VAL n 1 202 ASP n 1 203 LEU n 1 204 THR n 1 205 SER n 1 206 LEU n 1 207 GLY n 1 208 GLU n 1 209 THR n 1 210 LYS n 1 211 GLY n 1 212 LEU n 1 213 LYS n 1 214 PHE n 1 215 SER n 1 216 LEU n 1 217 THR n 1 218 SER n 1 219 THR n 1 220 LYS n 1 221 LYS n 1 222 ASN n 1 223 GLU n 1 224 TYR n 1 225 GLY n 1 226 PRO n 1 227 LEU n 1 228 THR n 1 229 PRO n 1 230 THR n 1 231 TYR n 1 232 PHE n 1 233 CYS n 1 234 LEU n 1 235 ASP n 1 236 GLY n 1 237 ILE n 1 238 THR n 1 239 ILE n 1 240 GLU n 1 241 ASP n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene BACOVA_04221 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'ATCC 8483' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Bacteroides ovatus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 411476 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia Coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain PB1 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name SpeedET _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code A7M287_BACOV _struct_ref.pdbx_db_accession A7M287 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;DDTKTYILSLPNYETHTLDMGDQENPDDSWSVSSEWGTTNYKYNLLTDASGIFEFDCVSSTYGFYSDSFAFTNCTVEDCP DFASYDYRAITKKGVINNTYVIVGAAGYKIGKNSDKEAAIRFRDHDNPNELEDYRVKGLYVTNSVYAYSSMKEGTGYYGE EEIFGSNDSFKLTIYNYDKTMHVDCYLAEGTNLLDQWKWVDLTSLGETKGLKFSLTSTKKNEYGPLTPTYFCLDGITIED ; _struct_ref.pdbx_align_begin 22 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4E9K _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 241 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession A7M287 _struct_ref_seq.db_align_beg 22 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 261 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 22 _struct_ref_seq.pdbx_auth_seq_align_end 261 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 4E9K _struct_ref_seq_dif.mon_id GLY _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 1 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code A7M287 _struct_ref_seq_dif.db_mon_id ? _struct_ref_seq_dif.pdbx_seq_db_seq_num ? _struct_ref_seq_dif.details 'expression tag' _struct_ref_seq_dif.pdbx_auth_seq_num 0 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 4E9K # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 4.07 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 69.81 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 6.0 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.pdbx_details '2.4M ammonium sulfate, 0.1M MES pH 6.0, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector PIXEL _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.details 'Flat mirror (vertical focusing); single crystal Si(111) bent monochromator (horizontal focusing)' _diffrn_detector.pdbx_collection_date 2012-02-09 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'single crystal Si(111) bent' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.91837 1.0 2 0.97975 1.0 3 0.97908 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.pdbx_synchrotron_beamline BL11-1 _diffrn_source.type 'SSRL BEAMLINE BL11-1' _diffrn_source.pdbx_wavelength_list 0.91837,0.97975,0.97908 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site SSRL # _reflns.entry_id 4E9K _reflns.d_resolution_high 2.31 _reflns.d_resolution_low 45.108 _reflns.number_obs 20538 _reflns.pdbx_Rmerge_I_obs 0.085 _reflns.pdbx_netI_over_sigmaI 16.380 _reflns.percent_possible_obs 99.800 _reflns.B_iso_Wilson_estimate 50.557 _reflns.observed_criterion_sigma_I -3.000 _reflns.observed_criterion_sigma_F ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 2.310 2.390 13629 ? 1968 0.875 2.1 ? ? ? ? ? 99.900 1 1 2.390 2.490 13379 ? 2077 0.765 2.3 ? ? ? ? ? 100.000 2 1 2.490 2.600 13835 ? 1953 0.568 3.3 ? ? ? ? ? 99.900 3 1 2.600 2.740 14914 ? 2083 0.397 4.6 ? ? ? ? ? 100.000 4 1 2.740 2.910 14172 ? 1993 0.268 6.8 ? ? ? ? ? 100.000 5 1 2.910 3.130 13713 ? 1983 0.158 11.3 ? ? ? ? ? 99.500 6 1 3.130 3.450 13896 ? 2081 0.089 18.4 ? ? ? ? ? 99.700 7 1 3.450 3.940 14506 ? 2044 0.057 28.6 ? ? ? ? ? 100.000 8 1 3.940 4.950 13533 ? 2089 0.037 38.1 ? ? ? ? ? 99.900 9 1 4.950 ? 14686 ? 2267 0.034 43.7 ? ? ? ? ? 99.600 10 1 # _refine.entry_id 4E9K _refine.ls_d_res_high 2.3100 _refine.ls_d_res_low 45.108 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.8100 _refine.ls_number_reflns_obs 20507 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 2. ATOM RECORD CONTAINS SUM OF TLS AND RESIDUAL B FACTORS. 3. ANISOU RECORD CONTAINS SUM OF TLS AND RESIDUAL U FACTORS. 4. WATERS WERE EXCLUDED FROM AUTOMATIC TLS ASSIGNMENT. 5. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 6. SULFATE (SO4) MOLECULES FROM THE CRYSTALLIZATION SOLUTION ARE MODELED. ; _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1798 _refine.ls_R_factor_R_work 0.1785 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.2038 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 5.1000 _refine.ls_number_reflns_R_free 1041 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 55.8103 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] 1.2000 _refine.aniso_B[2][2] 1.2000 _refine.aniso_B[3][3] -2.4000 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9640 _refine.correlation_coeff_Fo_to_Fc_free 0.9530 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R 0.1780 _refine.pdbx_overall_ESU_R_Free 0.1550 _refine.overall_SU_ML 0.1160 _refine.overall_SU_B 10.0540 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.pdbx_solvent_vdw_probe_radii 1.2000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 182.300 _refine.B_iso_min 27.860 _refine.pdbx_overall_phase_error ? _refine.occupancy_max 1.000 _refine.occupancy_min 0.400 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1917 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 20 _refine_hist.number_atoms_solvent 92 _refine_hist.number_atoms_total 2029 _refine_hist.d_res_high 2.3100 _refine_hist.d_res_low 45.108 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 1993 0.012 0.020 ? ? 'X-RAY DIFFRACTION' r_bond_other_d 1277 0.001 0.020 ? ? 'X-RAY DIFFRACTION' r_angle_refined_deg 2716 1.606 1.954 ? ? 'X-RAY DIFFRACTION' r_angle_other_deg 3116 0.861 3.001 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 243 7.599 5.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 100 39.047 25.300 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 313 13.826 15.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 4 18.213 15.000 ? ? 'X-RAY DIFFRACTION' r_chiral_restr 291 0.092 0.200 ? ? 'X-RAY DIFFRACTION' r_gen_planes_refined 2248 0.007 0.020 ? ? 'X-RAY DIFFRACTION' r_gen_planes_other 420 0.001 0.020 ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.d_res_high 2.3100 _refine_ls_shell.d_res_low 2.3700 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 99.9200 _refine_ls_shell.number_reflns_R_work 1256 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.2630 _refine_ls_shell.R_factor_R_free 0.2550 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 65 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 1321 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.title 'Crystal structure of a DUF4465 family protein (BACOVA_04221) from Bacteroides ovatus ATCC 8483 at 2.31 A resolution' _struct.entry_id 4E9K _struct.pdbx_model_type_details ? _struct.pdbx_model_details ? _struct.pdbx_CASP_flag Y # _struct_keywords.text ;PF14717 family protein, DUF4465, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-BIOLOGY, UNKNOWN FUNCTION ; _struct_keywords.pdbx_keywords 'STRUCTURAL GENOMICS, UNKNOWN FUNCTION' _struct_keywords.entry_id 4E9K # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 3 ? # _struct_biol.id 1 _struct_biol.details 'CRYSTAL PACKING ANALYSIS SUGGESTS THE ASSIGNMENT OF A DIMER AS THE SIGNIFICANT OLIGOMERIZATION STATE.' # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 CYS A 80 ? ALA A 84 ? CYS A 100 ALA A 104 5 ? 5 HELX_P HELX_P2 2 SER A 145 ? GLY A 155 ? SER A 165 GLY A 175 1 ? 11 HELX_P HELX_P3 3 TYR A 159 ? ILE A 164 ? TYR A 179 ILE A 184 5 ? 6 HELX_P HELX_P4 4 THR A 204 ? LEU A 206 ? THR A 224 LEU A 226 5 ? 3 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 75 SG ? ? ? 1_555 A CYS 80 SG ? ? A CYS 95 A CYS 100 1_555 ? ? ? ? ? ? ? 2.075 ? ? covale1 covale both ? A ASP 20 C ? ? ? 1_555 A MSE 21 N ? ? A ASP 40 A MSE 41 1_555 ? ? ? ? ? ? ? 1.337 ? ? covale2 covale both ? A MSE 21 C ? ? ? 1_555 A GLY 22 N ? ? A MSE 41 A GLY 42 1_555 ? ? ? ? ? ? ? 1.324 ? ? covale3 covale both ? A SER 151 C ? ? ? 1_555 A MSE 152 N ? ? A SER 171 A MSE 172 1_555 ? ? ? ? ? ? ? 1.321 ? ? covale4 covale both ? A MSE 152 C ? ? ? 1_555 A LYS 153 N ? ? A MSE 172 A LYS 173 1_555 ? ? ? ? ? ? ? 1.327 ? ? covale5 covale both ? A THR 181 C ? ? ? 1_555 A MSE 182 N ? ? A THR 201 A MSE 202 1_555 ? ? ? ? ? ? ? 1.322 ? ? covale6 covale both ? A MSE 182 C ? ? ? 1_555 A HIS 183 N ? ? A MSE 202 A HIS 203 1_555 ? ? ? ? ? ? ? 1.323 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 6 ? C ? 5 ? D ? 7 ? E ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel C 4 5 ? anti-parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel D 3 4 ? anti-parallel D 4 5 ? anti-parallel D 5 6 ? anti-parallel D 6 7 ? anti-parallel E 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 THR A 6 ? ILE A 8 ? THR A 26 ILE A 28 A 2 TYR A 231 ? GLU A 240 ? TYR A 251 GLU A 260 A 3 TYR A 135 ? ASN A 144 ? TYR A 155 ASN A 164 A 4 LYS A 199 ? ASP A 202 ? LYS A 219 ASP A 222 B 1 LEU A 19 ? ASP A 20 ? LEU A 39 ASP A 40 B 2 ASP A 68 ? THR A 73 ? ASP A 88 THR A 93 B 3 TYR A 101 ? ALA A 106 ? TYR A 121 ALA A 126 B 4 TYR A 231 ? GLU A 240 ? TYR A 251 GLU A 260 B 5 TYR A 135 ? ASN A 144 ? TYR A 155 ASN A 164 B 6 GLU A 208 ? THR A 209 ? GLU A 228 THR A 229 C 1 ASP A 29 ? SER A 35 ? ASP A 49 SER A 55 C 2 GLY A 38 ? THR A 48 ? GLY A 58 THR A 68 C 3 PHE A 54 ? SER A 61 ? PHE A 74 SER A 81 C 4 ILE A 121 ? ASP A 125 ? ILE A 141 ASP A 145 C 5 ASN A 128 ? LEU A 132 ? ASN A 148 LEU A 152 D 1 GLY A 64 ? PHE A 65 ? GLY A 84 PHE A 85 D 2 PHE A 54 ? SER A 61 ? PHE A 74 SER A 81 D 3 ILE A 121 ? ASP A 125 ? ILE A 141 ASP A 145 D 4 GLY A 211 ? SER A 218 ? GLY A 231 SER A 238 D 5 SER A 170 ? ASN A 177 ? SER A 190 ASN A 197 D 6 HIS A 183 ? GLU A 190 ? HIS A 203 GLU A 210 D 7 ASN A 193 ? LEU A 194 ? ASN A 213 LEU A 214 E 1 LYS A 221 ? ASN A 222 ? LYS A 241 ASN A 242 E 2 GLY A 225 ? PRO A 226 ? GLY A 245 PRO A 246 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N TYR A 7 ? N TYR A 27 O ILE A 239 ? O ILE A 259 A 2 3 O ASP A 235 ? O ASP A 255 N TYR A 141 ? N TYR A 161 A 3 4 N LEU A 140 ? N LEU A 160 O VAL A 201 ? O VAL A 221 B 1 2 N ASP A 20 ? N ASP A 40 O PHE A 72 ? O PHE A 92 B 2 3 N ALA A 71 ? N ALA A 91 O ILE A 103 ? O ILE A 123 B 3 4 N VAL A 104 ? N VAL A 124 O PHE A 232 ? O PHE A 252 B 4 5 O ASP A 235 ? O ASP A 255 N TYR A 141 ? N TYR A 161 B 5 6 N TYR A 135 ? N TYR A 155 O THR A 209 ? O THR A 229 C 1 2 N TRP A 31 ? N TRP A 51 O TYR A 42 ? O TYR A 62 C 2 3 N LYS A 43 ? N LYS A 63 O SER A 60 ? O SER A 80 C 3 4 N GLU A 55 ? N GLU A 75 O ARG A 122 ? O ARG A 142 C 4 5 N ASP A 125 ? N ASP A 145 O GLU A 131 ? O GLU A 151 D 1 2 O GLY A 64 ? O GLY A 84 N SER A 61 ? N SER A 81 D 2 3 N GLU A 55 ? N GLU A 75 O ARG A 122 ? O ARG A 142 D 3 4 N ILE A 121 ? N ILE A 141 O LEU A 212 ? O LEU A 232 D 4 5 O LYS A 213 ? O LYS A 233 N TYR A 176 ? N TYR A 196 D 5 6 N PHE A 171 ? N PHE A 191 O LEU A 188 ? O LEU A 208 D 6 7 N GLU A 190 ? N GLU A 210 O ASN A 193 ? O ASN A 213 E 1 2 N ASN A 222 ? N ASN A 242 O GLY A 225 ? O GLY A 245 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A SO4 300 ? 9 'BINDING SITE FOR RESIDUE SO4 A 300' AC2 Software A SO4 301 ? 4 'BINDING SITE FOR RESIDUE SO4 A 301' AC3 Software A SO4 302 ? 5 'BINDING SITE FOR RESIDUE SO4 A 302' AC4 Software A SO4 303 ? 7 'BINDING SITE FOR RESIDUE SO4 A 303' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 9 ASP A 28 ? ASP A 48 . ? 6_576 ? 2 AC1 9 ASP A 28 ? ASP A 48 . ? 1_555 ? 3 AC1 9 ASP A 29 ? ASP A 49 . ? 1_555 ? 4 AC1 9 ASP A 29 ? ASP A 49 . ? 6_576 ? 5 AC1 9 TYR A 44 ? TYR A 64 . ? 6_576 ? 6 AC1 9 HOH F . ? HOH A 423 . ? 1_555 ? 7 AC1 9 HOH F . ? HOH A 423 . ? 6_576 ? 8 AC1 9 HOH F . ? HOH A 490 . ? 1_555 ? 9 AC1 9 HOH F . ? HOH A 490 . ? 6_576 ? 10 AC2 4 HIS A 183 ? HIS A 203 . ? 1_555 ? 11 AC2 4 HOH F . ? HOH A 440 . ? 1_555 ? 12 AC2 4 HOH F . ? HOH A 466 . ? 1_555 ? 13 AC2 4 HOH F . ? HOH A 479 . ? 1_555 ? 14 AC3 5 LYS A 117 ? LYS A 137 . ? 1_555 ? 15 AC3 5 GLU A 118 ? GLU A 138 . ? 1_555 ? 16 AC3 5 TYR A 178 ? TYR A 198 . ? 1_555 ? 17 AC3 5 LYS A 213 ? LYS A 233 . ? 1_555 ? 18 AC3 5 HOH F . ? HOH A 428 . ? 1_555 ? 19 AC4 7 ASP A 134 ? ASP A 154 . ? 1_555 ? 20 AC4 7 ASN A 177 ? ASN A 197 . ? 1_555 ? 21 AC4 7 TYR A 178 ? TYR A 198 . ? 1_555 ? 22 AC4 7 ASP A 179 ? ASP A 199 . ? 1_555 ? 23 AC4 7 THR A 209 ? THR A 229 . ? 1_555 ? 24 AC4 7 LYS A 210 ? LYS A 230 . ? 1_555 ? 25 AC4 7 HOH F . ? HOH A 488 . ? 1_555 ? # _atom_sites.entry_id 4E9K _atom_sites.fract_transf_matrix[1][1] 0.010735 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.010735 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009698 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 0 ? ? ? A . n A 1 2 ASP 2 22 22 ASP ASP A . n A 1 3 ASP 3 23 23 ASP ASP A . n A 1 4 THR 4 24 24 THR THR A . n A 1 5 LYS 5 25 25 LYS LYS A . n A 1 6 THR 6 26 26 THR THR A . n A 1 7 TYR 7 27 27 TYR TYR A . n A 1 8 ILE 8 28 28 ILE ILE A . n A 1 9 LEU 9 29 29 LEU LEU A . n A 1 10 SER 10 30 30 SER SER A . n A 1 11 LEU 11 31 31 LEU LEU A . n A 1 12 PRO 12 32 32 PRO PRO A . n A 1 13 ASN 13 33 33 ASN ASN A . n A 1 14 TYR 14 34 34 TYR TYR A . n A 1 15 GLU 15 35 35 GLU GLU A . n A 1 16 THR 16 36 36 THR THR A . n A 1 17 HIS 17 37 37 HIS HIS A . n A 1 18 THR 18 38 38 THR THR A . n A 1 19 LEU 19 39 39 LEU LEU A . n A 1 20 ASP 20 40 40 ASP ASP A . n A 1 21 MSE 21 41 41 MSE MSE A . n A 1 22 GLY 22 42 42 GLY GLY A . n A 1 23 ASP 23 43 43 ASP ASP A . n A 1 24 GLN 24 44 44 GLN GLN A . n A 1 25 GLU 25 45 45 GLU GLU A . n A 1 26 ASN 26 46 46 ASN ASN A . n A 1 27 PRO 27 47 47 PRO PRO A . n A 1 28 ASP 28 48 48 ASP ASP A . n A 1 29 ASP 29 49 49 ASP ASP A . n A 1 30 SER 30 50 50 SER SER A . n A 1 31 TRP 31 51 51 TRP TRP A . n A 1 32 SER 32 52 52 SER SER A . n A 1 33 VAL 33 53 53 VAL VAL A . n A 1 34 SER 34 54 54 SER SER A . n A 1 35 SER 35 55 55 SER SER A . n A 1 36 GLU 36 56 56 GLU GLU A . n A 1 37 TRP 37 57 57 TRP TRP A . n A 1 38 GLY 38 58 58 GLY GLY A . n A 1 39 THR 39 59 59 THR THR A . n A 1 40 THR 40 60 60 THR THR A . n A 1 41 ASN 41 61 61 ASN ASN A . n A 1 42 TYR 42 62 62 TYR TYR A . n A 1 43 LYS 43 63 63 LYS LYS A . n A 1 44 TYR 44 64 64 TYR TYR A . n A 1 45 ASN 45 65 65 ASN ASN A . n A 1 46 LEU 46 66 66 LEU LEU A . n A 1 47 LEU 47 67 67 LEU LEU A . n A 1 48 THR 48 68 68 THR THR A . n A 1 49 ASP 49 69 69 ASP ASP A . n A 1 50 ALA 50 70 70 ALA ALA A . n A 1 51 SER 51 71 71 SER SER A . n A 1 52 GLY 52 72 72 GLY GLY A . n A 1 53 ILE 53 73 73 ILE ILE A . n A 1 54 PHE 54 74 74 PHE PHE A . n A 1 55 GLU 55 75 75 GLU GLU A . n A 1 56 PHE 56 76 76 PHE PHE A . n A 1 57 ASP 57 77 77 ASP ASP A . n A 1 58 CYS 58 78 78 CYS CYS A . n A 1 59 VAL 59 79 79 VAL VAL A . n A 1 60 SER 60 80 80 SER SER A . n A 1 61 SER 61 81 81 SER SER A . n A 1 62 THR 62 82 82 THR THR A . n A 1 63 TYR 63 83 83 TYR TYR A . n A 1 64 GLY 64 84 84 GLY GLY A . n A 1 65 PHE 65 85 85 PHE PHE A . n A 1 66 TYR 66 86 86 TYR TYR A . n A 1 67 SER 67 87 87 SER SER A . n A 1 68 ASP 68 88 88 ASP ASP A . n A 1 69 SER 69 89 89 SER SER A . n A 1 70 PHE 70 90 90 PHE PHE A . n A 1 71 ALA 71 91 91 ALA ALA A . n A 1 72 PHE 72 92 92 PHE PHE A . n A 1 73 THR 73 93 93 THR THR A . n A 1 74 ASN 74 94 94 ASN ASN A . n A 1 75 CYS 75 95 95 CYS CYS A . n A 1 76 THR 76 96 96 THR THR A . n A 1 77 VAL 77 97 97 VAL VAL A . n A 1 78 GLU 78 98 98 GLU GLU A . n A 1 79 ASP 79 99 99 ASP ASP A . n A 1 80 CYS 80 100 100 CYS CYS A . n A 1 81 PRO 81 101 101 PRO PRO A . n A 1 82 ASP 82 102 102 ASP ASP A . n A 1 83 PHE 83 103 103 PHE PHE A . n A 1 84 ALA 84 104 104 ALA ALA A . n A 1 85 SER 85 105 105 SER SER A . n A 1 86 TYR 86 106 106 TYR TYR A . n A 1 87 ASP 87 107 107 ASP ASP A . n A 1 88 TYR 88 108 108 TYR TYR A . n A 1 89 ARG 89 109 109 ARG ARG A . n A 1 90 ALA 90 110 110 ALA ALA A . n A 1 91 ILE 91 111 111 ILE ILE A . n A 1 92 THR 92 112 112 THR THR A . n A 1 93 LYS 93 113 113 LYS LYS A . n A 1 94 LYS 94 114 114 LYS LYS A . n A 1 95 GLY 95 115 115 GLY GLY A . n A 1 96 VAL 96 116 116 VAL VAL A . n A 1 97 ILE 97 117 117 ILE ILE A . n A 1 98 ASN 98 118 118 ASN ASN A . n A 1 99 ASN 99 119 119 ASN ASN A . n A 1 100 THR 100 120 120 THR THR A . n A 1 101 TYR 101 121 121 TYR TYR A . n A 1 102 VAL 102 122 122 VAL VAL A . n A 1 103 ILE 103 123 123 ILE ILE A . n A 1 104 VAL 104 124 124 VAL VAL A . n A 1 105 GLY 105 125 125 GLY GLY A . n A 1 106 ALA 106 126 126 ALA ALA A . n A 1 107 ALA 107 127 127 ALA ALA A . n A 1 108 GLY 108 128 128 GLY GLY A . n A 1 109 TYR 109 129 129 TYR TYR A . n A 1 110 LYS 110 130 130 LYS LYS A . n A 1 111 ILE 111 131 131 ILE ILE A . n A 1 112 GLY 112 132 132 GLY GLY A . n A 1 113 LYS 113 133 133 LYS LYS A . n A 1 114 ASN 114 134 134 ASN ASN A . n A 1 115 SER 115 135 135 SER SER A . n A 1 116 ASP 116 136 136 ASP ASP A . n A 1 117 LYS 117 137 137 LYS LYS A . n A 1 118 GLU 118 138 138 GLU GLU A . n A 1 119 ALA 119 139 139 ALA ALA A . n A 1 120 ALA 120 140 140 ALA ALA A . n A 1 121 ILE 121 141 141 ILE ILE A . n A 1 122 ARG 122 142 142 ARG ARG A . n A 1 123 PHE 123 143 143 PHE PHE A . n A 1 124 ARG 124 144 144 ARG ARG A . n A 1 125 ASP 125 145 145 ASP ASP A . n A 1 126 HIS 126 146 146 HIS HIS A . n A 1 127 ASP 127 147 147 ASP ASP A . n A 1 128 ASN 128 148 148 ASN ASN A . n A 1 129 PRO 129 149 149 PRO PRO A . n A 1 130 ASN 130 150 150 ASN ASN A . n A 1 131 GLU 131 151 151 GLU GLU A . n A 1 132 LEU 132 152 152 LEU LEU A . n A 1 133 GLU 133 153 153 GLU GLU A . n A 1 134 ASP 134 154 154 ASP ASP A . n A 1 135 TYR 135 155 155 TYR TYR A . n A 1 136 ARG 136 156 156 ARG ARG A . n A 1 137 VAL 137 157 157 VAL VAL A . n A 1 138 LYS 138 158 158 LYS LYS A . n A 1 139 GLY 139 159 159 GLY GLY A . n A 1 140 LEU 140 160 160 LEU LEU A . n A 1 141 TYR 141 161 161 TYR TYR A . n A 1 142 VAL 142 162 162 VAL VAL A . n A 1 143 THR 143 163 163 THR THR A . n A 1 144 ASN 144 164 164 ASN ASN A . n A 1 145 SER 145 165 165 SER SER A . n A 1 146 VAL 146 166 166 VAL VAL A . n A 1 147 TYR 147 167 167 TYR TYR A . n A 1 148 ALA 148 168 168 ALA ALA A . n A 1 149 TYR 149 169 169 TYR TYR A . n A 1 150 SER 150 170 170 SER SER A . n A 1 151 SER 151 171 171 SER SER A . n A 1 152 MSE 152 172 172 MSE MSE A . n A 1 153 LYS 153 173 173 LYS LYS A . n A 1 154 GLU 154 174 174 GLU GLU A . n A 1 155 GLY 155 175 175 GLY GLY A . n A 1 156 THR 156 176 176 THR THR A . n A 1 157 GLY 157 177 177 GLY GLY A . n A 1 158 TYR 158 178 178 TYR TYR A . n A 1 159 TYR 159 179 179 TYR TYR A . n A 1 160 GLY 160 180 180 GLY GLY A . n A 1 161 GLU 161 181 181 GLU GLU A . n A 1 162 GLU 162 182 182 GLU GLU A . n A 1 163 GLU 163 183 183 GLU GLU A . n A 1 164 ILE 164 184 184 ILE ILE A . n A 1 165 PHE 165 185 185 PHE PHE A . n A 1 166 GLY 166 186 186 GLY GLY A . n A 1 167 SER 167 187 187 SER SER A . n A 1 168 ASN 168 188 188 ASN ASN A . n A 1 169 ASP 169 189 189 ASP ASP A . n A 1 170 SER 170 190 190 SER SER A . n A 1 171 PHE 171 191 191 PHE PHE A . n A 1 172 LYS 172 192 192 LYS LYS A . n A 1 173 LEU 173 193 193 LEU LEU A . n A 1 174 THR 174 194 194 THR THR A . n A 1 175 ILE 175 195 195 ILE ILE A . n A 1 176 TYR 176 196 196 TYR TYR A . n A 1 177 ASN 177 197 197 ASN ASN A . n A 1 178 TYR 178 198 198 TYR TYR A . n A 1 179 ASP 179 199 199 ASP ASP A . n A 1 180 LYS 180 200 200 LYS LYS A . n A 1 181 THR 181 201 201 THR THR A . n A 1 182 MSE 182 202 202 MSE MSE A . n A 1 183 HIS 183 203 203 HIS HIS A . n A 1 184 VAL 184 204 204 VAL VAL A . n A 1 185 ASP 185 205 205 ASP ASP A . n A 1 186 CYS 186 206 206 CYS CYS A . n A 1 187 TYR 187 207 207 TYR TYR A . n A 1 188 LEU 188 208 208 LEU LEU A . n A 1 189 ALA 189 209 209 ALA ALA A . n A 1 190 GLU 190 210 210 GLU GLU A . n A 1 191 GLY 191 211 211 GLY GLY A . n A 1 192 THR 192 212 212 THR THR A . n A 1 193 ASN 193 213 213 ASN ASN A . n A 1 194 LEU 194 214 214 LEU LEU A . n A 1 195 LEU 195 215 215 LEU LEU A . n A 1 196 ASP 196 216 216 ASP ASP A . n A 1 197 GLN 197 217 217 GLN GLN A . n A 1 198 TRP 198 218 218 TRP TRP A . n A 1 199 LYS 199 219 219 LYS LYS A . n A 1 200 TRP 200 220 220 TRP TRP A . n A 1 201 VAL 201 221 221 VAL VAL A . n A 1 202 ASP 202 222 222 ASP ASP A . n A 1 203 LEU 203 223 223 LEU LEU A . n A 1 204 THR 204 224 224 THR THR A . n A 1 205 SER 205 225 225 SER SER A . n A 1 206 LEU 206 226 226 LEU LEU A . n A 1 207 GLY 207 227 227 GLY GLY A . n A 1 208 GLU 208 228 228 GLU GLU A . n A 1 209 THR 209 229 229 THR THR A . n A 1 210 LYS 210 230 230 LYS LYS A . n A 1 211 GLY 211 231 231 GLY GLY A . n A 1 212 LEU 212 232 232 LEU LEU A . n A 1 213 LYS 213 233 233 LYS LYS A . n A 1 214 PHE 214 234 234 PHE PHE A . n A 1 215 SER 215 235 235 SER SER A . n A 1 216 LEU 216 236 236 LEU LEU A . n A 1 217 THR 217 237 237 THR THR A . n A 1 218 SER 218 238 238 SER SER A . n A 1 219 THR 219 239 239 THR THR A . n A 1 220 LYS 220 240 240 LYS LYS A . n A 1 221 LYS 221 241 241 LYS LYS A . n A 1 222 ASN 222 242 242 ASN ASN A . n A 1 223 GLU 223 243 243 GLU GLU A . n A 1 224 TYR 224 244 244 TYR TYR A . n A 1 225 GLY 225 245 245 GLY GLY A . n A 1 226 PRO 226 246 246 PRO PRO A . n A 1 227 LEU 227 247 247 LEU LEU A . n A 1 228 THR 228 248 248 THR THR A . n A 1 229 PRO 229 249 249 PRO PRO A . n A 1 230 THR 230 250 250 THR THR A . n A 1 231 TYR 231 251 251 TYR TYR A . n A 1 232 PHE 232 252 252 PHE PHE A . n A 1 233 CYS 233 253 253 CYS CYS A . n A 1 234 LEU 234 254 254 LEU LEU A . n A 1 235 ASP 235 255 255 ASP ASP A . n A 1 236 GLY 236 256 256 GLY GLY A . n A 1 237 ILE 237 257 257 ILE ILE A . n A 1 238 THR 238 258 258 THR THR A . n A 1 239 ILE 239 259 259 ILE ILE A . n A 1 240 GLU 240 260 260 GLU GLU A . n A 1 241 ASP 241 261 261 ASP ASP A . n # _pdbx_SG_project.project_name PSI:Biology _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center JCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 1 300 300 SO4 SO4 A . C 2 SO4 1 301 301 SO4 SO4 A . D 2 SO4 1 302 302 SO4 SO4 A . E 2 SO4 1 303 303 SO4 SO4 A . F 3 HOH 1 401 304 HOH HOH A . F 3 HOH 2 402 305 HOH HOH A . F 3 HOH 3 403 306 HOH HOH A . F 3 HOH 4 404 307 HOH HOH A . F 3 HOH 5 405 308 HOH HOH A . F 3 HOH 6 406 309 HOH HOH A . F 3 HOH 7 407 310 HOH HOH A . F 3 HOH 8 408 311 HOH HOH A . F 3 HOH 9 409 312 HOH HOH A . F 3 HOH 10 410 313 HOH HOH A . F 3 HOH 11 411 314 HOH HOH A . F 3 HOH 12 412 315 HOH HOH A . F 3 HOH 13 413 316 HOH HOH A . F 3 HOH 14 414 317 HOH HOH A . F 3 HOH 15 415 318 HOH HOH A . F 3 HOH 16 416 319 HOH HOH A . F 3 HOH 17 417 320 HOH HOH A . F 3 HOH 18 418 321 HOH HOH A . F 3 HOH 19 419 322 HOH HOH A . F 3 HOH 20 420 323 HOH HOH A . F 3 HOH 21 421 324 HOH HOH A . F 3 HOH 22 422 325 HOH HOH A . F 3 HOH 23 423 326 HOH HOH A . F 3 HOH 24 424 327 HOH HOH A . F 3 HOH 25 425 328 HOH HOH A . F 3 HOH 26 426 329 HOH HOH A . F 3 HOH 27 427 330 HOH HOH A . F 3 HOH 28 428 331 HOH HOH A . F 3 HOH 29 429 332 HOH HOH A . F 3 HOH 30 430 333 HOH HOH A . F 3 HOH 31 431 334 HOH HOH A . F 3 HOH 32 432 335 HOH HOH A . F 3 HOH 33 433 336 HOH HOH A . F 3 HOH 34 434 337 HOH HOH A . F 3 HOH 35 435 338 HOH HOH A . F 3 HOH 36 436 339 HOH HOH A . F 3 HOH 37 437 340 HOH HOH A . F 3 HOH 38 438 341 HOH HOH A . F 3 HOH 39 439 342 HOH HOH A . F 3 HOH 40 440 343 HOH HOH A . F 3 HOH 41 441 344 HOH HOH A . F 3 HOH 42 442 345 HOH HOH A . F 3 HOH 43 443 346 HOH HOH A . F 3 HOH 44 444 347 HOH HOH A . F 3 HOH 45 445 348 HOH HOH A . F 3 HOH 46 446 349 HOH HOH A . F 3 HOH 47 447 350 HOH HOH A . F 3 HOH 48 448 351 HOH HOH A . F 3 HOH 49 449 352 HOH HOH A . F 3 HOH 50 450 353 HOH HOH A . F 3 HOH 51 451 354 HOH HOH A . F 3 HOH 52 452 355 HOH HOH A . F 3 HOH 53 453 356 HOH HOH A . F 3 HOH 54 454 357 HOH HOH A . F 3 HOH 55 455 358 HOH HOH A . F 3 HOH 56 456 359 HOH HOH A . F 3 HOH 57 457 360 HOH HOH A . F 3 HOH 58 458 361 HOH HOH A . F 3 HOH 59 459 362 HOH HOH A . F 3 HOH 60 460 363 HOH HOH A . F 3 HOH 61 461 364 HOH HOH A . F 3 HOH 62 462 365 HOH HOH A . F 3 HOH 63 463 366 HOH HOH A . F 3 HOH 64 464 367 HOH HOH A . F 3 HOH 65 465 368 HOH HOH A . F 3 HOH 66 466 369 HOH HOH A . F 3 HOH 67 467 370 HOH HOH A . F 3 HOH 68 468 371 HOH HOH A . F 3 HOH 69 469 372 HOH HOH A . F 3 HOH 70 470 373 HOH HOH A . F 3 HOH 71 471 374 HOH HOH A . F 3 HOH 72 472 375 HOH HOH A . F 3 HOH 73 473 376 HOH HOH A . F 3 HOH 74 474 377 HOH HOH A . F 3 HOH 75 475 378 HOH HOH A . F 3 HOH 76 476 379 HOH HOH A . F 3 HOH 77 477 380 HOH HOH A . F 3 HOH 78 478 381 HOH HOH A . F 3 HOH 79 479 382 HOH HOH A . F 3 HOH 80 480 383 HOH HOH A . F 3 HOH 81 481 384 HOH HOH A . F 3 HOH 82 482 385 HOH HOH A . F 3 HOH 83 483 386 HOH HOH A . F 3 HOH 84 484 387 HOH HOH A . F 3 HOH 85 485 388 HOH HOH A . F 3 HOH 86 486 389 HOH HOH A . F 3 HOH 87 487 390 HOH HOH A . F 3 HOH 88 488 391 HOH HOH A . F 3 HOH 89 489 392 HOH HOH A . F 3 HOH 90 490 393 HOH HOH A . F 3 HOH 91 491 394 HOH HOH A . F 3 HOH 92 492 395 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 21 A MSE 41 ? MET SELENOMETHIONINE 2 A MSE 152 A MSE 172 ? MET SELENOMETHIONINE 3 A MSE 182 A MSE 202 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3180 ? 1 MORE -121 ? 1 'SSA (A^2)' 22540 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 6_576 x,-y+2,-z+3/2 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 186.3120000000 0.0000000000 0.0000000000 -1.0000000000 154.6635000000 # _pdbx_struct_special_symmetry.id 1 _pdbx_struct_special_symmetry.PDB_model_num 1 _pdbx_struct_special_symmetry.auth_asym_id A _pdbx_struct_special_symmetry.auth_comp_id SO4 _pdbx_struct_special_symmetry.auth_seq_id 300 _pdbx_struct_special_symmetry.PDB_ins_code ? _pdbx_struct_special_symmetry.label_asym_id B _pdbx_struct_special_symmetry.label_comp_id SO4 _pdbx_struct_special_symmetry.label_seq_id . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-05-16 2 'Structure model' 1 1 2014-12-24 3 'Structure model' 1 2 2017-11-15 4 'Structure model' 1 3 2018-01-24 5 'Structure model' 1 4 2023-02-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Structure summary' 2 3 'Structure model' 'Refinement description' 3 4 'Structure model' 'Database references' 4 5 'Structure model' 'Database references' 5 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' citation_author 3 5 'Structure model' database_2 4 5 'Structure model' struct_conn 5 5 'Structure model' struct_ref_seq_dif 6 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.classification' 2 3 'Structure model' '_software.name' 3 4 'Structure model' '_citation_author.name' 4 5 'Structure model' '_database_2.pdbx_DOI' 5 5 'Structure model' '_database_2.pdbx_database_accession' 6 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 7 5 'Structure model' '_struct_ref_seq_dif.details' 8 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 9 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 10 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 32.2190 _pdbx_refine_tls.origin_y 87.1650 _pdbx_refine_tls.origin_z 60.4870 _pdbx_refine_tls.T[1][1] 0.0551 _pdbx_refine_tls.T[2][2] 0.0780 _pdbx_refine_tls.T[3][3] 0.0129 _pdbx_refine_tls.T[1][2] -0.0076 _pdbx_refine_tls.T[1][3] 0.0185 _pdbx_refine_tls.T[2][3] -0.0169 _pdbx_refine_tls.L[1][1] 1.7536 _pdbx_refine_tls.L[2][2] 0.6736 _pdbx_refine_tls.L[3][3] 1.4157 _pdbx_refine_tls.L[1][2] 0.4842 _pdbx_refine_tls.L[1][3] -0.2134 _pdbx_refine_tls.L[2][3] -0.0325 _pdbx_refine_tls.S[1][1] 0.0147 _pdbx_refine_tls.S[2][2] -0.0053 _pdbx_refine_tls.S[3][3] -0.0094 _pdbx_refine_tls.S[1][2] 0.2348 _pdbx_refine_tls.S[1][3] -0.0705 _pdbx_refine_tls.S[2][3] -0.0186 _pdbx_refine_tls.S[2][1] -0.0119 _pdbx_refine_tls.S[3][1] 0.1156 _pdbx_refine_tls.S[3][2] -0.0396 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id 22 _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 261 _pdbx_refine_tls_group.selection_details ? _pdbx_refine_tls_group.beg_label_asym_id . _pdbx_refine_tls_group.beg_label_seq_id . _pdbx_refine_tls_group.end_label_asym_id . _pdbx_refine_tls_group.end_label_seq_id . _pdbx_refine_tls_group.selection ? # _phasing.method MAD # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 MolProbity 3beta29 ? package 'D.C. & J.S. Richardson lab' molprobity@kinemage.biochem.duke.edu 'model building' http://kinemage.biochem.duke.edu/molprobity/ ? ? 2 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 3 SHELX . ? package 'George M. Sheldrick' gsheldr@shelx.uni-ac.gwdg.de phasing http://shelx.uni-ac.gwdg.de/SHELX/ Fortran_77 ? 4 SHARP . ? package 'Eric de La Fortelle' sharp-develop@globalphasing.com phasing http://www.globalphasing.com/sharp/ ? ? 5 XSCALE 'December 29, 2011' ? package 'Wolfgang Kabsch' ? 'data scaling' http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html ? ? 6 REFMAC 5.6.0117 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 7 XDS . ? ? ? ? 'data reduction' ? ? ? 8 SHELXD . ? ? ? ? phasing ? ? ? # _pdbx_entry_details.entry_id 4E9K _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ;THIS CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY RESIDUES 22-261 OF THE TARGET SEQUENCE. ; _pdbx_entry_details.has_ligand_of_interest ? # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 CG _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 HIS _pdbx_validate_rmsd_bond.auth_seq_id_1 146 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 CD2 _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 HIS _pdbx_validate_rmsd_bond.auth_seq_id_2 146 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.412 _pdbx_validate_rmsd_bond.bond_target_value 1.354 _pdbx_validate_rmsd_bond.bond_deviation 0.058 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.009 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 THR A 36 ? ? -119.50 -136.87 2 1 VAL A 97 ? ? -37.96 119.11 3 1 LYS A 113 ? ? 67.05 -10.09 4 1 ASN A 118 ? ? -158.08 -158.51 5 1 GLU A 243 ? ? -39.36 -35.33 6 1 THR A 250 ? ? -96.39 57.40 # _pdbx_validate_peptide_omega.id 1 _pdbx_validate_peptide_omega.PDB_model_num 1 _pdbx_validate_peptide_omega.auth_comp_id_1 ASP _pdbx_validate_peptide_omega.auth_asym_id_1 A _pdbx_validate_peptide_omega.auth_seq_id_1 99 _pdbx_validate_peptide_omega.PDB_ins_code_1 ? _pdbx_validate_peptide_omega.label_alt_id_1 ? _pdbx_validate_peptide_omega.auth_comp_id_2 CYS _pdbx_validate_peptide_omega.auth_asym_id_2 A _pdbx_validate_peptide_omega.auth_seq_id_2 100 _pdbx_validate_peptide_omega.PDB_ins_code_2 ? _pdbx_validate_peptide_omega.label_alt_id_2 ? _pdbx_validate_peptide_omega.omega 144.31 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 133 ? CG ? A LYS 113 CG 2 1 Y 1 A LYS 133 ? CD ? A LYS 113 CD 3 1 Y 1 A LYS 133 ? CE ? A LYS 113 CE 4 1 Y 1 A LYS 133 ? NZ ? A LYS 113 NZ # _pdbx_unobs_or_zero_occ_residues.id 1 _pdbx_unobs_or_zero_occ_residues.PDB_model_num 1 _pdbx_unobs_or_zero_occ_residues.polymer_flag Y _pdbx_unobs_or_zero_occ_residues.occupancy_flag 1 _pdbx_unobs_or_zero_occ_residues.auth_asym_id A _pdbx_unobs_or_zero_occ_residues.auth_comp_id GLY _pdbx_unobs_or_zero_occ_residues.auth_seq_id 0 _pdbx_unobs_or_zero_occ_residues.PDB_ins_code ? _pdbx_unobs_or_zero_occ_residues.label_asym_id A _pdbx_unobs_or_zero_occ_residues.label_comp_id GLY _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SULFATE ION' SO4 3 water HOH #