HEADER VIRAL PROTEIN 21-MAR-12 4E9O TITLE VACCINIA D8L ECTODOMAIN STRUCTURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: IMV MEMBRANE PROTEIN; COMPND 3 CHAIN: X; COMPND 4 FRAGMENT: EXTRACELLULAR DOMAIN (UNP RESIDUES 1-261); COMPND 5 SYNONYM: D8L ANTIGEN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VACCINIA VIRUS; SOURCE 3 ORGANISM_TAXID: 10245; SOURCE 4 STRAIN: ACAMBIS CLONE 2000; SOURCE 5 GENE: VACAC2_124, VACCL3_124, VAC_DPP17_124; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: CODONPLUS BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET22B KEYWDS CAH ALPHA FOLD, VP7 MOTIF, BETA SHEET, CELL SURFACE CHONDROITIN KEYWDS 2 BINDING, VIRAL ENTRY, CHONDROITIN SULFATE, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.H.MATHO,D.M.ZAJONC REVDAT 3 13-SEP-23 4E9O 1 REMARK SEQADV REVDAT 2 25-JUL-12 4E9O 1 JRNL REVDAT 1 06-JUN-12 4E9O 0 JRNL AUTH M.H.MATHO,M.MAYBENO,M.R.BENHNIA,D.BECKER,X.MENG,Y.XIANG, JRNL AUTH 2 S.CROTTY,B.PETERS,D.M.ZAJONC JRNL TITL STRUCTURAL AND BIOCHEMICAL CHARACTERIZATION OF THE VACCINIA JRNL TITL 2 VIRUS ENVELOPE PROTEIN D8 AND ITS RECOGNITION BY THE JRNL TITL 3 ANTIBODY LA5. JRNL REF J.VIROL. V. 86 8050 2012 JRNL REFN ISSN 0022-538X JRNL PMID 22623786 JRNL DOI 10.1128/JVI.00836-12 REMARK 2 REMARK 2 RESOLUTION. 1.42 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.42 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.90 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 40635 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.190 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1313 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.42 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2971 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.80 REMARK 3 BIN R VALUE (WORKING SET) : 0.2490 REMARK 3 BIN FREE R VALUE SET COUNT : 98 REMARK 3 BIN FREE R VALUE : 0.2660 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1867 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 12 REMARK 3 SOLVENT ATOMS : 206 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.47 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.065 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.063 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.044 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.241 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.962 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2030 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2786 ; 1.349 ; 1.952 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 263 ; 6.046 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 97 ;31.216 ;25.155 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 353 ;12.777 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 4 ;23.823 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 306 ; 0.093 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1571 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1214 ; 0.785 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1994 ; 1.399 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 816 ; 2.098 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 776 ; 3.241 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : X 3 X 40 REMARK 3 ORIGIN FOR THE GROUP (A): 19.5764 11.1615 -3.7079 REMARK 3 T TENSOR REMARK 3 T11: 0.1028 T22: 0.0470 REMARK 3 T33: 0.0731 T12: 0.0258 REMARK 3 T13: 0.0238 T23: 0.0164 REMARK 3 L TENSOR REMARK 3 L11: 3.1953 L22: 2.6957 REMARK 3 L33: 0.9936 L12: 0.8854 REMARK 3 L13: -0.9792 L23: -0.8904 REMARK 3 S TENSOR REMARK 3 S11: 0.2166 S12: 0.1179 S13: 0.5102 REMARK 3 S21: 0.1302 S22: 0.0022 S23: 0.1973 REMARK 3 S31: -0.2171 S32: -0.1023 S33: -0.2188 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : X 41 X 132 REMARK 3 ORIGIN FOR THE GROUP (A): 19.9079 6.0518 -2.2989 REMARK 3 T TENSOR REMARK 3 T11: 0.0143 T22: 0.0031 REMARK 3 T33: 0.0222 T12: 0.0067 REMARK 3 T13: 0.0141 T23: 0.0077 REMARK 3 L TENSOR REMARK 3 L11: 2.3366 L22: 1.3407 REMARK 3 L33: 1.7546 L12: -0.3637 REMARK 3 L13: 0.1142 L23: -0.5197 REMARK 3 S TENSOR REMARK 3 S11: 0.0412 S12: 0.1152 S13: 0.0541 REMARK 3 S21: -0.0368 S22: 0.0195 S23: 0.0149 REMARK 3 S31: -0.0642 S32: -0.0586 S33: -0.0607 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : X 133 X 234 REMARK 3 ORIGIN FOR THE GROUP (A): 24.2722 2.6633 0.3940 REMARK 3 T TENSOR REMARK 3 T11: 0.0037 T22: 0.0275 REMARK 3 T33: 0.0164 T12: 0.0010 REMARK 3 T13: -0.0120 T23: -0.0096 REMARK 3 L TENSOR REMARK 3 L11: 1.2138 L22: 1.3471 REMARK 3 L33: 1.4121 L12: 0.0194 REMARK 3 L13: -0.2550 L23: -0.1525 REMARK 3 S TENSOR REMARK 3 S11: 0.0307 S12: 0.0079 S13: -0.0143 REMARK 3 S21: 0.0074 S22: -0.0019 S23: -0.0525 REMARK 3 S31: 0.0330 S32: -0.0004 S33: -0.0288 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 3 U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 4E9O COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-MAR-12. REMARK 100 THE DEPOSITION ID IS D_1000071344. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-MAY-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL7-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.100002 REMARK 200 MONOCHROMATOR : SIDE SCATTERING I-BEAM BENT REMARK 200 SINGLE CRYSTAL, ASYMMETRIC CUT REMARK 200 4.9650 DEGREES REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40635 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.420 REMARK 200 RESOLUTION RANGE LOW (A) : 25.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06800 REMARK 200 FOR THE DATA SET : 33.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.42 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.45 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.63000 REMARK 200 FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4ETQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 31.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M SODIUM IODIDE, 20% PEG3350, REMARK 280 VAPOR DIFFUSION, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+1/4 REMARK 290 4555 Y,-X,Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 22.20750 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 11.10375 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 33.31125 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: X REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET X 1 REMARK 465 ASN X 207 REMARK 465 HIS X 208 REMARK 465 GLU X 209 REMARK 465 GLY X 235 REMARK 465 GLU X 236 REMARK 465 ILE X 237 REMARK 465 ILE X 238 REMARK 465 ARG X 239 REMARK 465 ALA X 240 REMARK 465 ALA X 241 REMARK 465 THR X 242 REMARK 465 THR X 243 REMARK 465 SER X 244 REMARK 465 PRO X 245 REMARK 465 ALA X 246 REMARK 465 ARG X 247 REMARK 465 GLU X 248 REMARK 465 ASN X 249 REMARK 465 TYR X 250 REMARK 465 PHE X 251 REMARK 465 MET X 252 REMARK 465 ARG X 253 REMARK 465 TRP X 254 REMARK 465 LEU X 255 REMARK 465 SER X 256 REMARK 465 ASP X 257 REMARK 465 LEU X 258 REMARK 465 ARG X 259 REMARK 465 GLU X 260 REMARK 465 THR X 261 REMARK 465 LEU X 262 REMARK 465 GLU X 263 REMARK 465 HIS X 264 REMARK 465 HIS X 265 REMARK 465 HIS X 266 REMARK 465 HIS X 267 REMARK 465 HIS X 268 REMARK 465 HIS X 269 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PRO X 2 CG CD REMARK 470 ASN X 18 CG OD1 ND2 REMARK 470 ARG X 20 CG CD NE CZ NH1 NH2 REMARK 470 SER X 206 OG REMARK 470 LYS X 211 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 I IOD X 312 O HOH X 605 1.55 REMARK 500 I IOD X 306 O HOH X 603 1.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH X 452 O HOH X 601 2655 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR X 34 -62.28 -100.63 REMARK 500 TYR X 76 79.45 -154.09 REMARK 500 LEU X 124 33.30 -146.71 REMARK 500 ASN X 218 10.62 -147.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD X 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD X 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD X 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD X 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD X 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD X 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD X 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD X 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD X 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD X 310 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD X 311 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD X 312 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1YPY RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF VACCINIA VIRUS L1 PROTEIN REMARK 900 RELATED ID: 2I9L RELATED DB: PDB REMARK 900 STRUCTURE OF FAB 7D11 FROM A NEUTRALIZING ANTIBODY AGAINST THE REMARK 900 POXVIRUS L1 PROTEIN DBREF 4E9O X 1 261 UNP Q1M1K6 Q1M1K6_9POXV 1 261 SEQADV 4E9O LEU X 262 UNP Q1M1K6 EXPRESSION TAG SEQADV 4E9O GLU X 263 UNP Q1M1K6 EXPRESSION TAG SEQADV 4E9O HIS X 264 UNP Q1M1K6 EXPRESSION TAG SEQADV 4E9O HIS X 265 UNP Q1M1K6 EXPRESSION TAG SEQADV 4E9O HIS X 266 UNP Q1M1K6 EXPRESSION TAG SEQADV 4E9O HIS X 267 UNP Q1M1K6 EXPRESSION TAG SEQADV 4E9O HIS X 268 UNP Q1M1K6 EXPRESSION TAG SEQADV 4E9O HIS X 269 UNP Q1M1K6 EXPRESSION TAG SEQRES 1 X 269 MET PRO GLN GLN LEU SER PRO ILE ASN ILE GLU THR LYS SEQRES 2 X 269 LYS ALA ILE SER ASN ALA ARG LEU LYS PRO LEU ASP ILE SEQRES 3 X 269 HIS TYR ASN GLU SER LYS PRO THR THR ILE GLN ASN THR SEQRES 4 X 269 GLY LYS LEU VAL ARG ILE ASN PHE LYS GLY GLY TYR ILE SEQRES 5 X 269 SER GLY GLY PHE LEU PRO ASN GLU TYR VAL LEU SER SER SEQRES 6 X 269 LEU HIS ILE TYR TRP GLY LYS GLU ASP ASP TYR GLY SER SEQRES 7 X 269 ASN HIS LEU ILE ASP VAL TYR LYS TYR SER GLY GLU ILE SEQRES 8 X 269 ASN LEU VAL HIS TRP ASN LYS LYS LYS TYR SER SER TYR SEQRES 9 X 269 GLU GLU ALA LYS LYS HIS ASP ASP GLY LEU ILE ILE ILE SEQRES 10 X 269 SER ILE PHE LEU GLN VAL LEU ASP HIS LYS ASN VAL TYR SEQRES 11 X 269 PHE GLN LYS ILE VAL ASN GLN LEU ASP SER ILE ARG SER SEQRES 12 X 269 ALA ASN THR SER ALA PRO PHE ASP SER VAL PHE TYR LEU SEQRES 13 X 269 ASP ASN LEU LEU PRO SER LYS LEU ASP TYR PHE THR TYR SEQRES 14 X 269 LEU GLY THR THR ILE ASN HIS SER ALA ASP ALA VAL TRP SEQRES 15 X 269 ILE ILE PHE PRO THR PRO ILE ASN ILE HIS SER ASP GLN SEQRES 16 X 269 LEU SER LYS PHE ARG THR LEU LEU SER LEU SER ASN HIS SEQRES 17 X 269 GLU GLY LYS PRO HIS TYR ILE THR GLU ASN TYR ARG ASN SEQRES 18 X 269 PRO TYR LYS LEU ASN ASP ASP THR GLU VAL TYR TYR SER SEQRES 19 X 269 GLY GLU ILE ILE ARG ALA ALA THR THR SER PRO ALA ARG SEQRES 20 X 269 GLU ASN TYR PHE MET ARG TRP LEU SER ASP LEU ARG GLU SEQRES 21 X 269 THR LEU GLU HIS HIS HIS HIS HIS HIS HET IOD X 301 1 HET IOD X 302 1 HET IOD X 303 1 HET IOD X 304 1 HET IOD X 305 1 HET IOD X 306 1 HET IOD X 307 1 HET IOD X 308 1 HET IOD X 309 1 HET IOD X 310 1 HET IOD X 311 1 HET IOD X 312 1 HETNAM IOD IODIDE ION FORMUL 2 IOD 12(I 1-) FORMUL 14 HOH *206(H2 O) HELIX 1 1 GLU X 11 ALA X 15 5 5 HELIX 2 2 SER X 103 LYS X 108 1 6 HELIX 3 3 TYR X 130 ASN X 136 1 7 HELIX 4 4 GLN X 137 ARG X 142 5 6 HELIX 5 5 TYR X 155 LEU X 160 5 6 HELIX 6 6 HIS X 192 LYS X 198 1 7 HELIX 7 7 PHE X 199 LEU X 202 5 4 SHEET 1 A 2 ASN X 9 ILE X 10 0 SHEET 2 A 2 LEU X 81 ILE X 82 1 O LEU X 81 N ILE X 10 SHEET 1 B 6 LEU X 24 HIS X 27 0 SHEET 2 B 6 TYR X 51 GLY X 54 -1 O SER X 53 N ASP X 25 SHEET 3 B 6 TYR X 61 TRP X 70 -1 O TYR X 61 N ILE X 52 SHEET 4 B 6 VAL X 43 LYS X 48 -1 N PHE X 47 O SER X 64 SHEET 5 B 6 LYS X 32 ASN X 38 -1 N THR X 34 O ASN X 46 SHEET 6 B 6 THR X 146 PRO X 149 -1 O ALA X 148 N ILE X 36 SHEET 1 C 8 LEU X 24 HIS X 27 0 SHEET 2 C 8 TYR X 51 GLY X 54 -1 O SER X 53 N ASP X 25 SHEET 3 C 8 TYR X 61 TRP X 70 -1 O TYR X 61 N ILE X 52 SHEET 4 C 8 GLY X 89 TRP X 96 -1 O VAL X 94 N SER X 65 SHEET 5 C 8 LEU X 114 VAL X 123 -1 O ILE X 119 N ILE X 91 SHEET 6 C 8 ASP X 179 ILE X 191 1 O ILE X 183 N SER X 118 SHEET 7 C 8 PHE X 167 THR X 172 -1 N PHE X 167 O ILE X 184 SHEET 8 C 8 TYR X 232 TYR X 233 -1 O TYR X 232 N THR X 168 CISPEP 1 SER X 6 PRO X 7 0 1.16 SITE 1 AC1 2 TYR X 155 ASN X 158 SITE 1 AC2 2 LYS X 99 LYS X 127 SITE 1 AC3 1 HOH X 602 SITE 1 AC4 2 LYS X 133 ASN X 136 SITE 1 AC5 3 ASN X 145 SER X 234 HOH X 471 SITE 1 AC6 2 IOD X 312 HOH X 603 SITE 1 AC7 4 TYR X 104 LYS X 108 SER X 177 IOD X 310 SITE 1 AC8 2 LYS X 99 LYS X 127 SITE 1 AC9 3 SER X 65 HIS X 67 HOH X 488 SITE 1 BC1 3 TYR X 104 THR X 173 IOD X 307 SITE 1 BC2 2 HOH X 553 HOH X 555 SITE 1 BC3 5 GLU X 30 SER X 103 TYR X 104 IOD X 306 SITE 2 BC3 5 HOH X 605 CRYST1 71.281 71.281 44.415 90.00 90.00 90.00 P 41 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014029 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014029 0.000000 0.00000 SCALE3 0.000000 0.000000 0.022515 0.00000