HEADER TRANSFERASE 22-MAR-12 4EA9 TITLE X-RAY STRUCTURE OF GDP-PEROSAMINE N-ACETYLTRANSFERASE IN COMPLEX WITH TITLE 2 TRANSITION STATE ANALOG AT 0.9 ANGSTROM RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEROSAMINE N-ACETYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PERB, HEXAPEPTIDE TRANSFERASE FAMILY PROTEIN; COMPND 5 EC: 2.3.1.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CAULOBACTER VIBRIOIDES; SOURCE 3 ORGANISM_TAXID: 155892; SOURCE 4 GENE: CC_1011, WBQR; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: ROSETTA2(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28 KEYWDS BETA HELIX, ACETYLTRANSFERASE, ACETYL COENZYME A, GDP-PEROSAMINE, KEYWDS 2 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.B.THODEN,L.A.REINHARDT,P.D.COOK,P.MENDEN,W.W.CLELAND,H.M.HOLDEN REVDAT 4 13-SEP-23 4EA9 1 REMARK SEQADV REVDAT 3 26-DEC-12 4EA9 1 JRNL REVDAT 2 11-APR-12 4EA9 1 JRNL REVDAT 1 04-APR-12 4EA9 0 JRNL AUTH J.B.THODEN,L.A.REINHARDT,P.D.COOK,P.MENDEN,W.W.CLELAND, JRNL AUTH 2 H.M.HOLDEN JRNL TITL CATALYTIC MECHANISM OF PEROSAMINE N-ACETYLTRANSFERASE JRNL TITL 2 REVEALED BY HIGH-RESOLUTION X-RAY CRYSTALLOGRAPHIC STUDIES JRNL TITL 3 AND KINETIC ANALYSES. JRNL REF BIOCHEMISTRY V. 51 3433 2012 JRNL REFN ISSN 0006-2960 JRNL PMID 22443398 JRNL DOI 10.1021/BI300197H REMARK 2 REMARK 2 RESOLUTION. 0.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : SHELXL-97 REMARK 3 AUTHORS : G.M.SHELDRICK REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 0.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (NO CUTOFF). REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : 0.139 REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : 0.139 REMARK 3 FREE R VALUE (NO CUTOFF) : 0.155 REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : 9076 REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 181331 REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL FOR DATA WITH F>4SIG(F). REMARK 3 R VALUE (WORKING + TEST SET, F>4SIG(F)) : NULL REMARK 3 R VALUE (WORKING SET, F>4SIG(F)) : NULL REMARK 3 FREE R VALUE (F>4SIG(F)) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, F>4SIG(F)) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (F>4SIG(F)) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (F>4SIG(F)) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1439 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 91 REMARK 3 SOLVENT ATOMS : 342 REMARK 3 REMARK 3 MODEL REFINEMENT. REMARK 3 OCCUPANCY SUM OF NON-HYDROGEN ATOMS : NULL REMARK 3 OCCUPANCY SUM OF HYDROGEN ATOMS : NULL REMARK 3 NUMBER OF DISCRETELY DISORDERED RESIDUES : NULL REMARK 3 NUMBER OF LEAST-SQUARES PARAMETERS : NULL REMARK 3 NUMBER OF RESTRAINTS : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM RESTRAINT TARGET VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 ANGLE DISTANCES (A) : NULL REMARK 3 SIMILAR DISTANCES (NO TARGET VALUES) (A) : NULL REMARK 3 DISTANCES FROM RESTRAINT PLANES (A) : NULL REMARK 3 ZERO CHIRAL VOLUMES (A**3) : NULL REMARK 3 NON-ZERO CHIRAL VOLUMES (A**3) : NULL REMARK 3 ANTI-BUMPING DISTANCE RESTRAINTS (A) : NULL REMARK 3 RIGID-BOND ADP COMPONENTS (A**2) : NULL REMARK 3 SIMILAR ADP COMPONENTS (A**2) : NULL REMARK 3 APPROXIMATELY ISOTROPIC ADPS (A**2) : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED: NULL REMARK 3 REMARK 3 STEREOCHEMISTRY TARGET VALUES : ENGH & HUBER REMARK 3 SPECIAL CASE: NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4EA9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-MAR-12. REMARK 100 THE DEPOSITION ID IS D_1000071365. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-NOV-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.667 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 181485 REMARK 200 RESOLUTION RANGE HIGH (A) : 0.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : 8.100 REMARK 200 R MERGE (I) : 0.07200 REMARK 200 R SYM (I) : 0.07200 REMARK 200 FOR THE DATA SET : 50.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 0.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 0.92 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.60 REMARK 200 R MERGE FOR SHELL (I) : 0.36000 REMARK 200 R SYM FOR SHELL (I) : 0.36000 REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4EA7 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.88 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25-30% PEG5000 MME, 100 MM HEPES, PH REMARK 280 7.5, 10 MM COA, 10 MM GDP-PEROSAMINE, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z,-X,-Y REMARK 290 7555 -Z,-X,Y REMARK 290 8555 -Z,X,-Y REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z,-X REMARK 290 11555 Y,-Z,-X REMARK 290 12555 -Y,-Z,X REMARK 290 13555 X+1/2,Y+1/2,Z+1/2 REMARK 290 14555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 15555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 16555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 17555 Z+1/2,X+1/2,Y+1/2 REMARK 290 18555 Z+1/2,-X+1/2,-Y+1/2 REMARK 290 19555 -Z+1/2,-X+1/2,Y+1/2 REMARK 290 20555 -Z+1/2,X+1/2,-Y+1/2 REMARK 290 21555 Y+1/2,Z+1/2,X+1/2 REMARK 290 22555 -Y+1/2,Z+1/2,-X+1/2 REMARK 290 23555 Y+1/2,-Z+1/2,-X+1/2 REMARK 290 24555 -Y+1/2,-Z+1/2,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 57.40900 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 57.40900 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 57.40900 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 57.40900 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 57.40900 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 57.40900 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 57.40900 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 57.40900 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 57.40900 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 57.40900 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 57.40900 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 57.40900 REMARK 290 SMTRY1 17 0.000000 0.000000 1.000000 57.40900 REMARK 290 SMTRY2 17 1.000000 0.000000 0.000000 57.40900 REMARK 290 SMTRY3 17 0.000000 1.000000 0.000000 57.40900 REMARK 290 SMTRY1 18 0.000000 0.000000 1.000000 57.40900 REMARK 290 SMTRY2 18 -1.000000 0.000000 0.000000 57.40900 REMARK 290 SMTRY3 18 0.000000 -1.000000 0.000000 57.40900 REMARK 290 SMTRY1 19 0.000000 0.000000 -1.000000 57.40900 REMARK 290 SMTRY2 19 -1.000000 0.000000 0.000000 57.40900 REMARK 290 SMTRY3 19 0.000000 1.000000 0.000000 57.40900 REMARK 290 SMTRY1 20 0.000000 0.000000 -1.000000 57.40900 REMARK 290 SMTRY2 20 1.000000 0.000000 0.000000 57.40900 REMARK 290 SMTRY3 20 0.000000 -1.000000 0.000000 57.40900 REMARK 290 SMTRY1 21 0.000000 1.000000 0.000000 57.40900 REMARK 290 SMTRY2 21 0.000000 0.000000 1.000000 57.40900 REMARK 290 SMTRY3 21 1.000000 0.000000 0.000000 57.40900 REMARK 290 SMTRY1 22 0.000000 -1.000000 0.000000 57.40900 REMARK 290 SMTRY2 22 0.000000 0.000000 1.000000 57.40900 REMARK 290 SMTRY3 22 -1.000000 0.000000 0.000000 57.40900 REMARK 290 SMTRY1 23 0.000000 1.000000 0.000000 57.40900 REMARK 290 SMTRY2 23 0.000000 0.000000 -1.000000 57.40900 REMARK 290 SMTRY3 23 -1.000000 0.000000 0.000000 57.40900 REMARK 290 SMTRY1 24 0.000000 -1.000000 0.000000 57.40900 REMARK 290 SMTRY2 24 0.000000 0.000000 -1.000000 57.40900 REMARK 290 SMTRY3 24 1.000000 0.000000 0.000000 57.40900 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4280 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22700 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -29.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 3 1.000000 0.000000 0.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1264 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -4 REMARK 465 HIS A -3 REMARK 465 MET A -2 REMARK 465 GLY A -1 REMARK 465 ALA A 0 REMARK 465 ALA A 1 REMARK 465 SER A 2 REMARK 465 THR A 42 REMARK 465 ARG A 43 REMARK 465 ARG A 44 REMARK 465 ASP A 213 REMARK 465 ARG A 214 REMARK 465 SER A 215 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1337 O HOH A 1399 9555 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG A 174 CZ ARG A 174 NH2 0.114 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ILE A 7 O - C - N ANGL. DEV. = -10.9 DEGREES REMARK 500 GLY A 8 N - CA - C ANGL. DEV. = 18.9 DEGREES REMARK 500 GLY A 8 CA - C - O ANGL. DEV. = 13.7 DEGREES REMARK 500 GLY A 8 O - C - N ANGL. DEV. = -11.1 DEGREES REMARK 500 MET A 60 CB - CG - SD ANGL. DEV. = 20.0 DEGREES REMARK 500 ARG A 68 NH1 - CZ - NH2 ANGL. DEV. = -6.7 DEGREES REMARK 500 ARG A 68 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 ARG A 77 CD - NE - CZ ANGL. DEV. = 17.2 DEGREES REMARK 500 ARG A 77 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG A 84 NE - CZ - NH2 ANGL. DEV. = 3.9 DEGREES REMARK 500 ARG A 87 NE - CZ - NH1 ANGL. DEV. = 7.6 DEGREES REMARK 500 ARG A 87 NE - CZ - NH2 ANGL. DEV. = -6.3 DEGREES REMARK 500 ARG A 108 CD - NE - CZ ANGL. DEV. = 20.6 DEGREES REMARK 500 ARG A 108 NH1 - CZ - NH2 ANGL. DEV. = -8.1 DEGREES REMARK 500 ARG A 108 NE - CZ - NH1 ANGL. DEV. = 6.9 DEGREES REMARK 500 ARG A 166 NE - CZ - NH1 ANGL. DEV. = -3.8 DEGREES REMARK 500 ARG A 174 NH1 - CZ - NH2 ANGL. DEV. = -9.3 DEGREES REMARK 500 ARG A 174 NH1 - CZ - NH2 ANGL. DEV. = 7.4 DEGREES REMARK 500 ARG A 174 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ARG A 174 NE - CZ - NH1 ANGL. DEV. = -5.8 DEGREES REMARK 500 ARG A 174 NE - CZ - NH2 ANGL. DEV. = 5.2 DEGREES REMARK 500 ARG A 195 CG - CD - NE ANGL. DEV. = -16.9 DEGREES REMARK 500 ARG A 195 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 54 -168.89 -100.02 REMARK 500 ALA A 158 30.58 -87.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE JBT A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 1004 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4EA7 RELATED DB: PDB REMARK 900 WILD TYPE ENZYME IN COMPLEX WITH COA AND GDP-PEROSAMINE REMARK 900 RELATED ID: 4EA8 RELATED DB: PDB REMARK 900 WILD TYPE ENZYME IN COMPLEX WITH COA AND GDP-N-ACETYLPEROSAMINE REMARK 900 RELATED ID: 4EAA RELATED DB: PDB REMARK 900 H141N MUTANT ENZYME IN COMPLEX WITH COA AND GDP-PEROSAMINE REMARK 900 RELATED ID: 4EAB RELATED DB: PDB REMARK 900 H141A MUTANT ENZYME IN COMPLEX WITH COA AND GDP-PEROSAMINE DBREF 4EA9 A 2 215 UNP O85353 O85353_CAUCR 2 215 SEQADV 4EA9 GLY A -4 UNP O85353 EXPRESSION TAG SEQADV 4EA9 HIS A -3 UNP O85353 EXPRESSION TAG SEQADV 4EA9 MET A -2 UNP O85353 EXPRESSION TAG SEQADV 4EA9 GLY A -1 UNP O85353 EXPRESSION TAG SEQADV 4EA9 ALA A 0 UNP O85353 EXPRESSION TAG SEQADV 4EA9 ALA A 1 UNP O85353 EXPRESSION TAG SEQRES 1 A 220 GLY HIS MET GLY ALA ALA SER ALA SER LEU ALA ILE GLY SEQRES 2 A 220 GLY VAL VAL ILE ILE GLY GLY GLY GLY HIS ALA LYS VAL SEQRES 3 A 220 VAL ILE GLU SER LEU ARG ALA CYS GLY GLU THR VAL ALA SEQRES 4 A 220 ALA ILE VAL ASP ALA ASP PRO THR ARG ARG ALA VAL LEU SEQRES 5 A 220 GLY VAL PRO VAL VAL GLY ASP ASP LEU ALA LEU PRO MET SEQRES 6 A 220 LEU ARG GLU GLN GLY LEU SER ARG LEU PHE VAL ALA ILE SEQRES 7 A 220 GLY ASP ASN ARG LEU ARG GLN LYS LEU GLY ARG LYS ALA SEQRES 8 A 220 ARG ASP HIS GLY PHE SER LEU VAL ASN ALA ILE HIS PRO SEQRES 9 A 220 SER ALA VAL VAL SER PRO SER VAL ARG LEU GLY GLU GLY SEQRES 10 A 220 VAL ALA VAL MET ALA GLY VAL ALA ILE ASN ALA ASP SER SEQRES 11 A 220 TRP ILE GLY ASP LEU ALA ILE ILE ASN THR GLY ALA VAL SEQRES 12 A 220 VAL ASP HIS ASP CYS ARG LEU GLY ALA ALA CYS HIS LEU SEQRES 13 A 220 GLY PRO ALA SER ALA LEU ALA GLY GLY VAL SER VAL GLY SEQRES 14 A 220 GLU ARG ALA PHE LEU GLY VAL GLY ALA ARG VAL ILE PRO SEQRES 15 A 220 GLY VAL THR ILE GLY ALA ASP THR ILE VAL GLY ALA GLY SEQRES 16 A 220 GLY VAL VAL VAL ARG ASP LEU PRO ASP SER VAL LEU ALA SEQRES 17 A 220 ILE GLY VAL PRO ALA LYS ILE LYS GLY ASP ARG SER HET JBT A1001 88 HET CL A1002 1 HET CL A1003 1 HET CL A1004 1 HETNAM JBT GDP-N-ACETYLPEROSAMINE-COENZYME A HETNAM CL CHLORIDE ION FORMUL 2 JBT C39 H64 N13 O30 P5 S FORMUL 3 CL 3(CL 1-) FORMUL 6 HOH *342(H2 O) HELIX 1 1 GLY A 16 CYS A 29 1 14 HELIX 2 2 ASP A 54 LEU A 56 5 3 HELIX 3 3 ALA A 57 GLN A 64 1 8 HELIX 4 4 ASP A 75 HIS A 89 1 15 SHEET 1 A 5 VAL A 51 GLY A 53 0 SHEET 2 A 5 VAL A 33 VAL A 37 1 N ILE A 36 O VAL A 52 SHEET 3 A 5 VAL A 10 ILE A 13 1 N ILE A 12 O ALA A 35 SHEET 4 A 5 ARG A 68 VAL A 71 1 O ARG A 68 N VAL A 11 SHEET 5 A 5 SER A 92 LEU A 93 1 O SER A 92 N LEU A 69 SHEET 1 B 8 ALA A 96 ILE A 97 0 SHEET 2 B 8 ALA A 114 VAL A 115 1 O VAL A 115 N ALA A 96 SHEET 3 B 8 ILE A 132 ILE A 133 1 O ILE A 133 N ALA A 114 SHEET 4 B 8 HIS A 150 LEU A 151 1 O LEU A 151 N ILE A 132 SHEET 5 B 8 PHE A 168 LEU A 169 1 O LEU A 169 N HIS A 150 SHEET 6 B 8 ILE A 186 VAL A 187 1 O VAL A 187 N PHE A 168 SHEET 7 B 8 LEU A 202 ILE A 204 1 O ALA A 203 N ILE A 186 SHEET 8 B 8 LYS A 209 ILE A 210 -1 O LYS A 209 N ILE A 204 SHEET 1 C 6 VAL A 102 VAL A 103 0 SHEET 2 C 6 ALA A 120 ILE A 121 1 O ILE A 121 N VAL A 102 SHEET 3 C 6 VAL A 138 VAL A 139 1 O VAL A 139 N ALA A 120 SHEET 4 C 6 ALA A 156 LEU A 157 1 O LEU A 157 N VAL A 138 SHEET 5 C 6 ARG A 174 VAL A 175 1 O VAL A 175 N ALA A 156 SHEET 6 C 6 VAL A 192 VAL A 193 1 O VAL A 193 N ARG A 174 SHEET 1 D 5 ARG A 108 LEU A 109 0 SHEET 2 D 5 TRP A 126 ILE A 127 1 O ILE A 127 N ARG A 108 SHEET 3 D 5 ARG A 144 LEU A 145 1 O LEU A 145 N TRP A 126 SHEET 4 D 5 SER A 162 VAL A 163 1 O VAL A 163 N ARG A 144 SHEET 5 D 5 THR A 180 ILE A 181 1 O ILE A 181 N SER A 162 CISPEP 1 VAL A 206 PRO A 207 0 -4.82 SITE 1 AC1 58 ILE A 13 GLY A 16 GLY A 17 HIS A 18 SITE 2 AC1 58 VAL A 37 ASP A 38 ALA A 39 ASP A 55 SITE 3 AC1 58 ILE A 73 GLY A 74 LEU A 78 ASP A 140 SITE 4 AC1 58 HIS A 141 HIS A 150 PRO A 153 ALA A 158 SITE 5 AC1 58 PHE A 168 GLY A 170 VAL A 171 PRO A 177 SITE 6 AC1 58 GLY A 188 ALA A 189 VAL A 194 ILE A 204 SITE 7 AC1 58 PRO A 207 LYS A 211 HOH A1101 HOH A1106 SITE 8 AC1 58 HOH A1110 HOH A1111 HOH A1119 HOH A1139 SITE 9 AC1 58 HOH A1145 HOH A1146 HOH A1158 HOH A1170 SITE 10 AC1 58 HOH A1201 HOH A1204 HOH A1218 HOH A1224 SITE 11 AC1 58 HOH A1236 HOH A1242 HOH A1245 HOH A1271 SITE 12 AC1 58 HOH A1272 HOH A1273 HOH A1277 HOH A1291 SITE 13 AC1 58 HOH A1300 HOH A1308 HOH A1346 HOH A1349 SITE 14 AC1 58 HOH A1362 HOH A1368 HOH A1373 HOH A1376 SITE 15 AC1 58 HOH A1417 HOH A1428 SITE 1 AC2 7 ARG A 79 GLY A 112 ALA A 114 LEU A 130 SITE 2 AC2 7 ALA A 131 ILE A 132 HOH A1104 SITE 1 AC3 4 ARG A 27 VAL A 33 HOH A1259 HOH A1311 SITE 1 AC4 5 GLY A 90 LYS A 209 ILE A 210 HOH A1219 SITE 2 AC4 5 HOH A1325 CRYST1 114.818 114.818 114.818 90.00 90.00 90.00 I 2 3 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008709 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008709 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008709 0.00000