HEADER TRANSFERASE 22-MAR-12 4EAA TITLE X-RAY CRYSTAL STRUCTURE OF THE H141N MUTANT OF PEROSAMINE N- TITLE 2 ACETYLTRANSFERASE FROM CAULOBACTER CRESCENTUS IN COMPLEX WITH COA AND TITLE 3 GDP-PEROSAMINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEROSAMINE N-ACETYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PERB, HEXAPEPTIDE TRANSFERASE FAMILY PROTEIN; COMPND 5 EC: 2.3.1.-; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CAULOBACTER VIBRIOIDES; SOURCE 3 ORGANISM_TAXID: 155892; SOURCE 4 GENE: CC_1011, WBQR; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: ROSETTA2(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28 KEYWDS BETA HELIX, ACETYLTRANSFERASE, ACETYL COENZYME A, GDP-PEROSAMINE, KEYWDS 2 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.B.THODEN,L.A.REINHARDT,P.D.COOK,P.MENDEN,W.W.CLELAND,H.M.HOLDEN REVDAT 4 13-SEP-23 4EAA 1 REMARK SEQADV LINK REVDAT 3 26-DEC-12 4EAA 1 JRNL REVDAT 2 11-APR-12 4EAA 1 JRNL REVDAT 1 04-APR-12 4EAA 0 JRNL AUTH J.B.THODEN,L.A.REINHARDT,P.D.COOK,P.MENDEN,W.W.CLELAND, JRNL AUTH 2 H.M.HOLDEN JRNL TITL CATALYTIC MECHANISM OF PEROSAMINE N-ACETYLTRANSFERASE JRNL TITL 2 REVEALED BY HIGH-RESOLUTION X-RAY CRYSTALLOGRAPHIC STUDIES JRNL TITL 3 AND KINETIC ANALYSES. JRNL REF BIOCHEMISTRY V. 51 3433 2012 JRNL REFN ISSN 0006-2960 JRNL PMID 22443398 JRNL DOI 10.1021/BI300197H REMARK 2 REMARK 2 RESOLUTION. 1.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.66 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 3 NUMBER OF REFLECTIONS : 41237 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2200 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.45 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.49 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2810 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 88.87 REMARK 3 BIN R VALUE (WORKING SET) : 0.2990 REMARK 3 BIN FREE R VALUE SET COUNT : 145 REMARK 3 BIN FREE R VALUE : 0.3310 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1463 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 88 REMARK 3 SOLVENT ATOMS : 200 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.08 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.061 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.065 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.044 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.186 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.952 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1620 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2229 ; 2.105 ; 2.037 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 222 ; 6.992 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 51 ;36.301 ;22.745 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 237 ;14.280 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;23.749 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 272 ; 0.174 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1176 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1046 ; 1.868 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1670 ; 2.841 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 574 ; 4.908 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 552 ; 7.632 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 3 U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 4EAA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-MAR-12. REMARK 100 THE DEPOSITION ID IS D_1000071366. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-APR-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54178 REMARK 200 MONOCHROMATOR : NI-FILTER REMARK 200 OPTICS : MONTEL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : BRUKER PLATINUM 135 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : SAINT REMARK 200 DATA SCALING SOFTWARE : SADABS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44567 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.450 REMARK 200 RESOLUTION RANGE LOW (A) : 81.322 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 9.300 REMARK 200 R MERGE (I) : 0.06600 REMARK 200 R SYM (I) : 0.06600 REMARK 200 FOR THE DATA SET : 14.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.55 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.4 REMARK 200 DATA REDUNDANCY IN SHELL : 4.30 REMARK 200 R MERGE FOR SHELL (I) : 0.36400 REMARK 200 R SYM FOR SHELL (I) : 0.36400 REMARK 200 FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4EA7 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25-30% PEG5000 MME, 100 MM HEPES, PH REMARK 280 7.5, 5 MM COA, 5 MM GDP, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z,-X,-Y REMARK 290 7555 -Z,-X,Y REMARK 290 8555 -Z,X,-Y REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z,-X REMARK 290 11555 Y,-Z,-X REMARK 290 12555 -Y,-Z,X REMARK 290 13555 X+1/2,Y+1/2,Z+1/2 REMARK 290 14555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 15555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 16555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 17555 Z+1/2,X+1/2,Y+1/2 REMARK 290 18555 Z+1/2,-X+1/2,-Y+1/2 REMARK 290 19555 -Z+1/2,-X+1/2,Y+1/2 REMARK 290 20555 -Z+1/2,X+1/2,-Y+1/2 REMARK 290 21555 Y+1/2,Z+1/2,X+1/2 REMARK 290 22555 -Y+1/2,Z+1/2,-X+1/2 REMARK 290 23555 Y+1/2,-Z+1/2,-X+1/2 REMARK 290 24555 -Y+1/2,-Z+1/2,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 57.50350 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 57.50350 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 57.50350 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 57.50350 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 57.50350 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 57.50350 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 57.50350 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 57.50350 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 57.50350 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 57.50350 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 57.50350 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 57.50350 REMARK 290 SMTRY1 17 0.000000 0.000000 1.000000 57.50350 REMARK 290 SMTRY2 17 1.000000 0.000000 0.000000 57.50350 REMARK 290 SMTRY3 17 0.000000 1.000000 0.000000 57.50350 REMARK 290 SMTRY1 18 0.000000 0.000000 1.000000 57.50350 REMARK 290 SMTRY2 18 -1.000000 0.000000 0.000000 57.50350 REMARK 290 SMTRY3 18 0.000000 -1.000000 0.000000 57.50350 REMARK 290 SMTRY1 19 0.000000 0.000000 -1.000000 57.50350 REMARK 290 SMTRY2 19 -1.000000 0.000000 0.000000 57.50350 REMARK 290 SMTRY3 19 0.000000 1.000000 0.000000 57.50350 REMARK 290 SMTRY1 20 0.000000 0.000000 -1.000000 57.50350 REMARK 290 SMTRY2 20 1.000000 0.000000 0.000000 57.50350 REMARK 290 SMTRY3 20 0.000000 -1.000000 0.000000 57.50350 REMARK 290 SMTRY1 21 0.000000 1.000000 0.000000 57.50350 REMARK 290 SMTRY2 21 0.000000 0.000000 1.000000 57.50350 REMARK 290 SMTRY3 21 1.000000 0.000000 0.000000 57.50350 REMARK 290 SMTRY1 22 0.000000 -1.000000 0.000000 57.50350 REMARK 290 SMTRY2 22 0.000000 0.000000 1.000000 57.50350 REMARK 290 SMTRY3 22 -1.000000 0.000000 0.000000 57.50350 REMARK 290 SMTRY1 23 0.000000 1.000000 0.000000 57.50350 REMARK 290 SMTRY2 23 0.000000 0.000000 -1.000000 57.50350 REMARK 290 SMTRY3 23 -1.000000 0.000000 0.000000 57.50350 REMARK 290 SMTRY1 24 0.000000 -1.000000 0.000000 57.50350 REMARK 290 SMTRY2 24 0.000000 0.000000 -1.000000 57.50350 REMARK 290 SMTRY3 24 1.000000 0.000000 0.000000 57.50350 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9150 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21300 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -127.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT3 3 1.000000 0.000000 0.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 NA NA A 303 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 489 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -4 REMARK 465 HIS A -3 REMARK 465 MET A -2 REMARK 465 GLY A -1 REMARK 465 ALA A 0 REMARK 465 ALA A 1 REMARK 465 SER A 2 REMARK 465 ARG A 43 REMARK 465 ARG A 214 REMARK 465 SER A 215 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CE MET A 116 O HOH A 470 1.90 REMARK 500 O HOH A 482 O HOH A 536 1.93 REMARK 500 SG CYS A 29 O HOH A 507 2.03 REMARK 500 O HOH A 422 O HOH A 569 2.13 REMARK 500 O HOH A 481 O HOH A 598 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 480 O HOH A 547 12555 1.95 REMARK 500 O HOH A 433 O HOH A 445 4555 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 68 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG A 79 NE - CZ - NH1 ANGL. DEV. = -4.3 DEGREES REMARK 500 ARG A 87 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG A 174 NE - CZ - NH2 ANGL. DEV. = 4.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 72 66.77 -100.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 303 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 410 O REMARK 620 2 HOH A 437 O 93.3 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE JB2 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE COA A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 304 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4EA7 RELATED DB: PDB REMARK 900 WILD TYPE ENZYME IN COMPLEX WITH COA AND GDP-PEROSAMINE REMARK 900 RELATED ID: 4EA8 RELATED DB: PDB REMARK 900 WILD TYPE ENZYME IN COMPLEX WITH COA AND GDP-N-ACETYLPEROSAMINE REMARK 900 RELATED ID: 4EA9 RELATED DB: PDB REMARK 900 WILD TYPE ENZYME IN COMPLEX WITH TRANSITION STATE ANALOG REMARK 900 RELATED ID: 4EAB RELATED DB: PDB REMARK 900 H141A MUTANT ENZYME IN COMPLEX WITH COA AND GDP-PEROSAMINE DBREF 4EAA A 2 215 UNP O85353 O85353_CAUCR 2 215 SEQADV 4EAA GLY A -4 UNP O85353 EXPRESSION TAG SEQADV 4EAA HIS A -3 UNP O85353 EXPRESSION TAG SEQADV 4EAA MET A -2 UNP O85353 EXPRESSION TAG SEQADV 4EAA GLY A -1 UNP O85353 EXPRESSION TAG SEQADV 4EAA ALA A 0 UNP O85353 EXPRESSION TAG SEQADV 4EAA ALA A 1 UNP O85353 EXPRESSION TAG SEQADV 4EAA ASN A 141 UNP O85353 HIS 141 ENGINEERED MUTATION SEQRES 1 A 220 GLY HIS MET GLY ALA ALA SER ALA SER LEU ALA ILE GLY SEQRES 2 A 220 GLY VAL VAL ILE ILE GLY GLY GLY GLY HIS ALA LYS VAL SEQRES 3 A 220 VAL ILE GLU SER LEU ARG ALA CYS GLY GLU THR VAL ALA SEQRES 4 A 220 ALA ILE VAL ASP ALA ASP PRO THR ARG ARG ALA VAL LEU SEQRES 5 A 220 GLY VAL PRO VAL VAL GLY ASP ASP LEU ALA LEU PRO MET SEQRES 6 A 220 LEU ARG GLU GLN GLY LEU SER ARG LEU PHE VAL ALA ILE SEQRES 7 A 220 GLY ASP ASN ARG LEU ARG GLN LYS LEU GLY ARG LYS ALA SEQRES 8 A 220 ARG ASP HIS GLY PHE SER LEU VAL ASN ALA ILE HIS PRO SEQRES 9 A 220 SER ALA VAL VAL SER PRO SER VAL ARG LEU GLY GLU GLY SEQRES 10 A 220 VAL ALA VAL MET ALA GLY VAL ALA ILE ASN ALA ASP SER SEQRES 11 A 220 TRP ILE GLY ASP LEU ALA ILE ILE ASN THR GLY ALA VAL SEQRES 12 A 220 VAL ASP ASN ASP CYS ARG LEU GLY ALA ALA CYS HIS LEU SEQRES 13 A 220 GLY PRO ALA SER ALA LEU ALA GLY GLY VAL SER VAL GLY SEQRES 14 A 220 GLU ARG ALA PHE LEU GLY VAL GLY ALA ARG VAL ILE PRO SEQRES 15 A 220 GLY VAL THR ILE GLY ALA ASP THR ILE VAL GLY ALA GLY SEQRES 16 A 220 GLY VAL VAL VAL ARG ASP LEU PRO ASP SER VAL LEU ALA SEQRES 17 A 220 ILE GLY VAL PRO ALA LYS ILE LYS GLY ASP ARG SER HET JB2 A 301 38 HET COA A 302 48 HET NA A 303 1 HET CL A 304 1 HETNAM JB2 GDP-PEROSAMINE HETNAM COA COENZYME A HETNAM NA SODIUM ION HETNAM CL CHLORIDE ION FORMUL 2 JB2 C16 H26 N6 O14 P2 FORMUL 3 COA C21 H36 N7 O16 P3 S FORMUL 4 NA NA 1+ FORMUL 5 CL CL 1- FORMUL 6 HOH *200(H2 O) HELIX 1 1 GLY A 16 CYS A 29 1 14 HELIX 2 2 ASP A 54 LEU A 56 5 3 HELIX 3 3 ALA A 57 GLN A 64 1 8 HELIX 4 4 ASP A 75 HIS A 89 1 15 SHEET 1 A 6 ALA A 45 VAL A 46 0 SHEET 2 A 6 VAL A 49 GLY A 53 -1 O VAL A 49 N VAL A 46 SHEET 3 A 6 VAL A 33 VAL A 37 1 N ILE A 36 O PRO A 50 SHEET 4 A 6 VAL A 10 ILE A 13 1 N ILE A 12 O ALA A 35 SHEET 5 A 6 ARG A 68 VAL A 71 1 O ARG A 68 N VAL A 11 SHEET 6 A 6 SER A 92 LEU A 93 1 O SER A 92 N LEU A 69 SHEET 1 B 8 ALA A 96 ILE A 97 0 SHEET 2 B 8 ALA A 114 VAL A 115 1 O VAL A 115 N ALA A 96 SHEET 3 B 8 ILE A 132 ILE A 133 1 O ILE A 133 N ALA A 114 SHEET 4 B 8 HIS A 150 LEU A 151 1 O LEU A 151 N ILE A 132 SHEET 5 B 8 PHE A 168 LEU A 169 1 O LEU A 169 N HIS A 150 SHEET 6 B 8 ILE A 186 VAL A 187 1 O VAL A 187 N PHE A 168 SHEET 7 B 8 LEU A 202 ILE A 204 1 O ALA A 203 N ILE A 186 SHEET 8 B 8 LYS A 209 ILE A 210 -1 O LYS A 209 N ILE A 204 SHEET 1 C 6 VAL A 102 VAL A 103 0 SHEET 2 C 6 ALA A 120 ILE A 121 1 O ILE A 121 N VAL A 102 SHEET 3 C 6 VAL A 138 VAL A 139 1 O VAL A 139 N ALA A 120 SHEET 4 C 6 ALA A 156 LEU A 157 1 O LEU A 157 N VAL A 138 SHEET 5 C 6 ARG A 174 VAL A 175 1 O VAL A 175 N ALA A 156 SHEET 6 C 6 VAL A 192 VAL A 193 1 O VAL A 193 N ARG A 174 SHEET 1 D 5 ARG A 108 LEU A 109 0 SHEET 2 D 5 TRP A 126 ILE A 127 1 O ILE A 127 N ARG A 108 SHEET 3 D 5 ARG A 144 LEU A 145 1 O LEU A 145 N TRP A 126 SHEET 4 D 5 SER A 162 VAL A 163 1 O VAL A 163 N ARG A 144 SHEET 5 D 5 THR A 180 ILE A 181 1 O ILE A 181 N SER A 162 LINK NA NA A 303 O HOH A 410 1555 1555 2.09 LINK NA NA A 303 O HOH A 437 1555 1555 1.98 CISPEP 1 VAL A 206 PRO A 207 0 -3.51 SITE 1 AC1 23 ILE A 13 GLY A 16 GLY A 17 HIS A 18 SITE 2 AC1 23 VAL A 37 ASP A 38 ALA A 39 ASP A 40 SITE 3 AC1 23 ASP A 55 ILE A 73 GLY A 74 LEU A 78 SITE 4 AC1 23 HIS A 150 PRO A 177 COA A 302 HOH A 413 SITE 5 AC1 23 HOH A 435 HOH A 442 HOH A 511 HOH A 512 SITE 6 AC1 23 HOH A 542 HOH A 550 HOH A 597 SITE 1 AC2 16 PRO A 153 PHE A 168 GLY A 170 VAL A 171 SITE 2 AC2 16 PRO A 177 ALA A 189 VAL A 194 ILE A 204 SITE 3 AC2 16 PRO A 207 LYS A 211 JB2 A 301 HOH A 406 SITE 4 AC2 16 HOH A 450 HOH A 542 HOH A 548 HOH A 582 SITE 1 AC3 2 HOH A 410 HOH A 437 SITE 1 AC4 4 ARG A 27 VAL A 33 HOH A 433 HOH A 484 CRYST1 115.007 115.007 115.007 90.00 90.00 90.00 I 2 3 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008698 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008698 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008698 0.00000