HEADER TRANSFERASE 22-MAR-12 4EAI TITLE CO-CRYSTAL STRUCTURE OF AN AMPK CORE WITH AMP COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'-AMP-ACTIVATED PROTEIN KINASE CATALYTIC SUBUNIT ALPHA-1; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: AMPK SUBUNIT ALPHA-1,ACETYL-COA CARBOXYLASE KINASE,ACACA COMPND 5 KINASE,HYDROXYMETHYLGLUTARYL-COA REDUCTASE KINASE,HMGCR KINASE,TAU- COMPND 6 PROTEIN KINASE PRKAA1; COMPND 7 EC: 2.7.11.1,2.7.11.27,2.7.11.31,2.7.11.26; COMPND 8 ENGINEERED: YES; COMPND 9 OTHER_DETAILS: CHIMERA PROTEIN OF RESIDUES 405-479 AND RESIDUES 540- COMPND 10 559 FROM 5'-AMP-ACTIVATED PROTEIN KINASE CATALYTIC SUBUNIT ALPHA-1 COMPND 11 (UNIPROT P54645), LINKED BY LINKER GGGGGG; COMPND 12 MOL_ID: 2; COMPND 13 MOLECULE: 5'-AMP-ACTIVATED PROTEIN KINASE SUBUNIT BETA-2; COMPND 14 CHAIN: B; COMPND 15 FRAGMENT: UNP RESIDUES 189-272; COMPND 16 SYNONYM: AMPK SUBUNIT BETA-2; COMPND 17 ENGINEERED: YES; COMPND 18 MOL_ID: 3; COMPND 19 MOLECULE: 5'-AMP-ACTIVATED PROTEIN KINASE SUBUNIT GAMMA-1; COMPND 20 CHAIN: C; COMPND 21 SYNONYM: AMPKG; COMPND 22 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: PRKAA1, AMPK1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 GENE: PRKAB2; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 16 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 17 MOL_ID: 3; SOURCE 18 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 19 ORGANISM_COMMON: RAT; SOURCE 20 ORGANISM_TAXID: 10116; SOURCE 21 GENE: PRKAG1; SOURCE 22 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 23 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 24 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS AMPK, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR L.CHEN,J.WANG,Y.-Y.ZHANG,S.F.YAN,D.NEUMANN,U.SCHLATTNER,Z.-X.WANG,J.- AUTHOR 2 W.WU REVDAT 4 08-NOV-23 4EAI 1 REMARK REVDAT 3 21-JUN-17 4EAI 1 COMPND SOURCE REVDAT 2 12-MAR-14 4EAI 1 JRNL REVDAT 1 06-JUN-12 4EAI 0 JRNL AUTH L.CHEN,J.WANG,Y.-Y.ZHANG,S.F.YAN,D.NEUMANN,U.SCHLATTNER, JRNL AUTH 2 Z.-X.WANG,J.-W.WU JRNL TITL AMP-ACTIVATED PROTEIN KINASE UNDERGOES NUCLEOTIDE-DEPENDENT JRNL TITL 2 CONFORMATIONAL CHANGES JRNL REF NAT.STRUCT.MOL.BIOL. V. 19 716 2012 JRNL REFN ISSN 1545-9993 JRNL PMID 22659875 JRNL DOI 10.1038/NSMB.2319 REMARK 2 REMARK 2 RESOLUTION. 2.29 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.5_2 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.29 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.55 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.060 REMARK 3 COMPLETENESS FOR RANGE (%) : 90.6 REMARK 3 NUMBER OF REFLECTIONS : 23163 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 1172 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.5498 - 4.5649 0.94 3020 154 0.1946 0.2498 REMARK 3 2 4.5649 - 3.6254 0.96 2952 152 0.1609 0.1952 REMARK 3 3 3.6254 - 3.1677 0.96 2925 148 0.1870 0.2722 REMARK 3 4 3.1677 - 2.8784 0.94 2813 156 0.1967 0.2597 REMARK 3 5 2.8784 - 2.6722 0.92 2783 157 0.2047 0.2812 REMARK 3 6 2.6722 - 2.5148 0.90 2658 146 0.2106 0.2718 REMARK 3 7 2.5148 - 2.3889 0.85 2567 125 0.2260 0.2763 REMARK 3 8 2.3889 - 2.2849 0.77 2273 134 0.2485 0.3038 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 K_SOL : 0.34 REMARK 3 B_SOL : 43.80 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.310 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.290 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 34.29 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.95 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 9.35330 REMARK 3 B22 (A**2) : -2.07530 REMARK 3 B33 (A**2) : -7.27800 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 3694 REMARK 3 ANGLE : 0.908 5017 REMARK 3 CHIRALITY : 0.055 591 REMARK 3 PLANARITY : 0.004 604 REMARK 3 DIHEDRAL : 17.181 1341 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 15 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 394:425) REMARK 3 ORIGIN FOR THE GROUP (A): 3.8809 39.2871 -13.5484 REMARK 3 T TENSOR REMARK 3 T11: 0.0844 T22: -0.0295 REMARK 3 T33: 0.1458 T12: -0.1653 REMARK 3 T13: -0.1837 T23: -0.1208 REMARK 3 L TENSOR REMARK 3 L11: 1.7152 L22: 1.1019 REMARK 3 L33: 1.0385 L12: 0.1211 REMARK 3 L13: 0.8511 L23: -0.0870 REMARK 3 S TENSOR REMARK 3 S11: 0.0046 S12: -0.0976 S13: 0.1917 REMARK 3 S21: 0.2197 S22: 0.0675 S23: 0.3190 REMARK 3 S31: -0.5542 S32: -0.2712 S33: 0.1366 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 426:445) REMARK 3 ORIGIN FOR THE GROUP (A): 10.6419 28.7851 -18.6338 REMARK 3 T TENSOR REMARK 3 T11: 0.0260 T22: 0.1197 REMARK 3 T33: 0.4210 T12: -0.0066 REMARK 3 T13: 0.0028 T23: 0.0579 REMARK 3 L TENSOR REMARK 3 L11: 0.0348 L22: 3.0236 REMARK 3 L33: 1.8196 L12: 0.3104 REMARK 3 L13: -0.1526 L23: -1.9025 REMARK 3 S TENSOR REMARK 3 S11: 0.3440 S12: -0.0350 S13: 0.4778 REMARK 3 S21: 0.0073 S22: -0.3405 S23: -0.1823 REMARK 3 S31: -0.0201 S32: 0.4830 S33: 0.0404 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 446:472) REMARK 3 ORIGIN FOR THE GROUP (A): 0.3875 36.4146 -20.9768 REMARK 3 T TENSOR REMARK 3 T11: 0.1288 T22: 0.1304 REMARK 3 T33: 0.2397 T12: -0.0190 REMARK 3 T13: -0.0545 T23: 0.0130 REMARK 3 L TENSOR REMARK 3 L11: 1.9826 L22: 5.4990 REMARK 3 L33: 0.7847 L12: -2.5241 REMARK 3 L13: 0.4143 L23: -0.6139 REMARK 3 S TENSOR REMARK 3 S11: -0.2084 S12: 0.2776 S13: -0.0620 REMARK 3 S21: 0.4091 S22: -0.0124 S23: 0.1292 REMARK 3 S31: -0.1227 S32: 0.0425 S33: 0.2255 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 473:493) REMARK 3 ORIGIN FOR THE GROUP (A): 2.0457 26.6322 -11.7315 REMARK 3 T TENSOR REMARK 3 T11: 0.0987 T22: 0.0983 REMARK 3 T33: 0.1607 T12: 0.0199 REMARK 3 T13: -0.0426 T23: -0.0275 REMARK 3 L TENSOR REMARK 3 L11: 2.1442 L22: 2.0881 REMARK 3 L33: 0.7819 L12: 2.0985 REMARK 3 L13: 0.3377 L23: 0.1196 REMARK 3 S TENSOR REMARK 3 S11: -0.0969 S12: 0.0112 S13: -0.3217 REMARK 3 S21: 0.0903 S22: -0.0414 S23: -0.5582 REMARK 3 S31: 0.0501 S32: -0.0243 S33: 0.0578 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN B AND RESID 204:210) REMARK 3 ORIGIN FOR THE GROUP (A): -3.5889 44.0105 -27.2138 REMARK 3 T TENSOR REMARK 3 T11: 0.3328 T22: 0.3539 REMARK 3 T33: 0.5176 T12: -0.0772 REMARK 3 T13: -0.1251 T23: 0.0793 REMARK 3 L TENSOR REMARK 3 L11: 4.6463 L22: 3.7223 REMARK 3 L33: 0.5961 L12: 3.6353 REMARK 3 L13: 0.9506 L23: 0.6725 REMARK 3 S TENSOR REMARK 3 S11: 0.0434 S12: -0.0952 S13: 0.6105 REMARK 3 S21: -0.4926 S22: -0.3426 S23: 0.3659 REMARK 3 S31: 0.0473 S32: 0.0408 S33: 0.3308 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN B AND RESID 211:236) REMARK 3 ORIGIN FOR THE GROUP (A): -13.3313 34.7628 -22.6496 REMARK 3 T TENSOR REMARK 3 T11: 0.2691 T22: 0.1350 REMARK 3 T33: 0.3359 T12: 0.0519 REMARK 3 T13: -0.0729 T23: 0.0304 REMARK 3 L TENSOR REMARK 3 L11: 2.3307 L22: 2.4631 REMARK 3 L33: 2.5288 L12: 1.2608 REMARK 3 L13: 1.0739 L23: -1.3238 REMARK 3 S TENSOR REMARK 3 S11: 0.2023 S12: -0.0225 S13: 0.5985 REMARK 3 S21: 0.0785 S22: -0.0582 S23: 0.5171 REMARK 3 S31: 0.4394 S32: 0.2028 S33: -0.1267 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN B AND RESID 237:245) REMARK 3 ORIGIN FOR THE GROUP (A): -7.4364 30.5676 -19.0715 REMARK 3 T TENSOR REMARK 3 T11: 0.0755 T22: 0.1137 REMARK 3 T33: 0.1392 T12: -0.0392 REMARK 3 T13: 0.0202 T23: 0.0048 REMARK 3 L TENSOR REMARK 3 L11: 0.2959 L22: 2.2870 REMARK 3 L33: 3.8055 L12: 0.3945 REMARK 3 L13: 1.0024 L23: 0.5558 REMARK 3 S TENSOR REMARK 3 S11: -0.1222 S12: 0.0336 S13: -0.0032 REMARK 3 S21: -0.0193 S22: -0.0800 S23: -0.3933 REMARK 3 S31: -0.1551 S32: 0.3898 S33: 0.1550 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN B AND RESID 246:251) REMARK 3 ORIGIN FOR THE GROUP (A): -9.8470 30.4925 -2.3433 REMARK 3 T TENSOR REMARK 3 T11: 0.4897 T22: 0.3192 REMARK 3 T33: 0.3307 T12: 0.0104 REMARK 3 T13: -0.0024 T23: -0.1492 REMARK 3 L TENSOR REMARK 3 L11: 0.1551 L22: 0.0149 REMARK 3 L33: 0.4975 L12: -0.0478 REMARK 3 L13: 0.2790 L23: -0.0833 REMARK 3 S TENSOR REMARK 3 S11: 0.2534 S12: -0.0965 S13: 0.2133 REMARK 3 S21: -0.2561 S22: -0.1803 S23: 0.0945 REMARK 3 S31: 0.0537 S32: 0.0199 S33: -0.0815 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN B AND RESID 252:271) REMARK 3 ORIGIN FOR THE GROUP (A): -7.1204 21.0839 -19.4253 REMARK 3 T TENSOR REMARK 3 T11: 0.1300 T22: 0.1507 REMARK 3 T33: 0.0796 T12: -0.0087 REMARK 3 T13: 0.0226 T23: -0.0302 REMARK 3 L TENSOR REMARK 3 L11: 0.3653 L22: 0.4518 REMARK 3 L33: 0.2611 L12: 0.0937 REMARK 3 L13: 0.1138 L23: -0.2751 REMARK 3 S TENSOR REMARK 3 S11: -0.1300 S12: 0.0410 S13: 0.0335 REMARK 3 S21: -0.1216 S22: -0.1427 S23: -0.0216 REMARK 3 S31: -0.0556 S32: 0.1104 S33: 0.1914 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN C AND RESID 26:106) REMARK 3 ORIGIN FOR THE GROUP (A): -12.7825 10.8941 -8.1631 REMARK 3 T TENSOR REMARK 3 T11: 0.0916 T22: 0.1021 REMARK 3 T33: 0.0769 T12: 0.0360 REMARK 3 T13: -0.0169 T23: -0.0209 REMARK 3 L TENSOR REMARK 3 L11: 0.2352 L22: 0.2804 REMARK 3 L33: 0.3507 L12: 0.0676 REMARK 3 L13: 0.1405 L23: -0.2483 REMARK 3 S TENSOR REMARK 3 S11: -0.0406 S12: -0.0555 S13: -0.0063 REMARK 3 S21: 0.0645 S22: -0.0502 S23: -0.0075 REMARK 3 S31: -0.0515 S32: -0.0614 S33: 0.0488 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: (CHAIN C AND RESID 107:126) REMARK 3 ORIGIN FOR THE GROUP (A): -8.8511 11.9455 5.2964 REMARK 3 T TENSOR REMARK 3 T11: 0.3580 T22: 0.3302 REMARK 3 T33: 0.0575 T12: -0.1126 REMARK 3 T13: -0.0223 T23: -0.0331 REMARK 3 L TENSOR REMARK 3 L11: 0.5643 L22: 1.3998 REMARK 3 L33: 0.3561 L12: -0.5907 REMARK 3 L13: -0.3665 L23: 0.6853 REMARK 3 S TENSOR REMARK 3 S11: 0.4063 S12: -0.1031 S13: -0.0123 REMARK 3 S21: -0.3879 S22: -0.4247 S23: 0.1210 REMARK 3 S31: -0.0908 S32: -0.5442 S33: 0.0063 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: (CHAIN C AND RESID 127:222) REMARK 3 ORIGIN FOR THE GROUP (A): -18.5743 -1.3887 -16.4731 REMARK 3 T TENSOR REMARK 3 T11: 0.1876 T22: 0.0751 REMARK 3 T33: 0.0737 T12: 0.0068 REMARK 3 T13: -0.0250 T23: -0.0067 REMARK 3 L TENSOR REMARK 3 L11: 1.1896 L22: 0.4455 REMARK 3 L33: 0.5771 L12: 0.6777 REMARK 3 L13: 0.1474 L23: 0.4542 REMARK 3 S TENSOR REMARK 3 S11: -0.0083 S12: -0.0416 S13: -0.0504 REMARK 3 S21: -0.0093 S22: 0.0365 S23: -0.0920 REMARK 3 S31: 0.3139 S32: -0.0974 S33: -0.0213 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: (CHAIN C AND RESID 223:265) REMARK 3 ORIGIN FOR THE GROUP (A): -32.8492 5.3928 -2.7993 REMARK 3 T TENSOR REMARK 3 T11: 0.1222 T22: 0.3068 REMARK 3 T33: 0.1336 T12: 0.0595 REMARK 3 T13: -0.0757 T23: -0.1601 REMARK 3 L TENSOR REMARK 3 L11: 0.4821 L22: 0.6479 REMARK 3 L33: 1.8423 L12: 0.3842 REMARK 3 L13: 0.6517 L23: 0.9234 REMARK 3 S TENSOR REMARK 3 S11: -0.1876 S12: -0.4113 S13: 0.0215 REMARK 3 S21: -0.0390 S22: -0.2632 S23: 0.0330 REMARK 3 S31: -0.0220 S32: -0.5955 S33: 0.3708 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: (CHAIN C AND RESID 266:273) REMARK 3 ORIGIN FOR THE GROUP (A): -36.7860 12.5655 -12.0587 REMARK 3 T TENSOR REMARK 3 T11: 1.0736 T22: 0.7381 REMARK 3 T33: 0.5313 T12: -0.0590 REMARK 3 T13: -0.2319 T23: -0.0367 REMARK 3 L TENSOR REMARK 3 L11: 0.7641 L22: 0.6913 REMARK 3 L33: 1.2161 L12: 0.0173 REMARK 3 L13: 0.0554 L23: 0.1404 REMARK 3 S TENSOR REMARK 3 S11: 0.2956 S12: 0.2696 S13: -0.0791 REMARK 3 S21: 0.5141 S22: 0.4116 S23: -0.0906 REMARK 3 S31: -0.2051 S32: -0.0691 S33: -0.6328 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: (CHAIN C AND RESID 274:324) REMARK 3 ORIGIN FOR THE GROUP (A): -30.6575 -5.8549 -17.9458 REMARK 3 T TENSOR REMARK 3 T11: 0.1794 T22: 0.1802 REMARK 3 T33: 0.1154 T12: -0.0707 REMARK 3 T13: -0.0275 T23: -0.0300 REMARK 3 L TENSOR REMARK 3 L11: 0.9858 L22: 1.0253 REMARK 3 L33: 0.3962 L12: 0.5873 REMARK 3 L13: -0.1575 L23: 0.3382 REMARK 3 S TENSOR REMARK 3 S11: 0.1352 S12: 0.1023 S13: -0.0076 REMARK 3 S21: -0.1245 S22: -0.2102 S23: -0.0126 REMARK 3 S31: 0.1540 S32: -0.1924 S33: 0.0540 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4EAI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 29-MAR-12. REMARK 100 THE DEPOSITION ID IS D_1000071374. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-SEP-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.26 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.99583 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24647 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.285 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.29 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.34 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.230 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2V8Q REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MES, 16% IPP, 1% 1,4-BUTANEDIOL, PH REMARK 280 6.26, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298 K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 48.79700 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 57.66700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 48.79700 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 57.66700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7380 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21190 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -38.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 389 REMARK 465 PRO A 390 REMARK 465 HIS A 391 REMARK 465 MET A 392 REMARK 465 GLY A 393 REMARK 465 GLN A 494 REMARK 465 MET B 188 REMARK 465 TYR B 189 REMARK 465 GLY B 190 REMARK 465 GLN B 191 REMARK 465 GLU B 192 REMARK 465 MET B 193 REMARK 465 TYR B 194 REMARK 465 ALA B 195 REMARK 465 PHE B 196 REMARK 465 ARG B 197 REMARK 465 SER B 198 REMARK 465 GLU B 199 REMARK 465 GLU B 200 REMARK 465 ARG B 201 REMARK 465 PHE B 202 REMARK 465 LYS B 203 REMARK 465 LYS B 219 REMARK 465 ASP B 220 REMARK 465 THR B 221 REMARK 465 ASN B 222 REMARK 465 ILE B 223 REMARK 465 SER B 224 REMARK 465 CYS B 225 REMARK 465 ASP B 226 REMARK 465 PRO B 227 REMARK 465 ALA B 228 REMARK 465 LEU B 229 REMARK 465 LEU B 230 REMARK 465 PRO B 231 REMARK 465 GLU B 232 REMARK 465 PRO B 233 REMARK 465 ASN B 234 REMARK 465 HIS B 235 REMARK 465 ILE B 272 REMARK 465 MET C 1 REMARK 465 GLU C 2 REMARK 465 SER C 3 REMARK 465 VAL C 4 REMARK 465 ALA C 5 REMARK 465 ALA C 6 REMARK 465 GLU C 7 REMARK 465 SER C 8 REMARK 465 ALA C 9 REMARK 465 PRO C 10 REMARK 465 ALA C 11 REMARK 465 PRO C 12 REMARK 465 GLU C 13 REMARK 465 ASN C 14 REMARK 465 GLU C 15 REMARK 465 HIS C 16 REMARK 465 SER C 17 REMARK 465 GLN C 18 REMARK 465 GLU C 19 REMARK 465 THR C 20 REMARK 465 PRO C 21 REMARK 465 GLU C 22 REMARK 465 SER C 23 REMARK 465 ASN C 24 REMARK 465 SER C 25 REMARK 465 LEU C 121 REMARK 465 GLN C 122 REMARK 465 ASP C 123 REMARK 465 SER C 124 REMARK 465 PHE C 125 REMARK 465 GLU C 251 REMARK 465 LYS C 252 REMARK 465 THR C 253 REMARK 465 TYR C 254 REMARK 465 ASN C 255 REMARK 465 GLY C 325 REMARK 465 GLY C 326 REMARK 465 GLU C 327 REMARK 465 LYS C 328 REMARK 465 LYS C 329 REMARK 465 PRO C 330 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 492 -136.57 -66.26 REMARK 500 ASN B 239 -0.98 73.77 REMARK 500 LYS B 260 -130.04 52.29 REMARK 500 GLU C 109 -72.14 -53.86 REMARK 500 ASP C 231 -159.51 -112.57 REMARK 500 LEU C 265 40.43 -90.07 REMARK 500 HIS C 267 25.74 -77.75 REMARK 500 ARG C 268 99.56 -54.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AMP C 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AMP C 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AMP C 403 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4EAG RELATED DB: PDB REMARK 900 RELATED ID: 4EAJ RELATED DB: PDB REMARK 900 RELATED ID: 4EAK RELATED DB: PDB REMARK 900 RELATED ID: 4EAL RELATED DB: PDB DBREF 4EAI A 394 468 UNP P54645 AAPK1_RAT 405 479 DBREF 4EAI A 475 494 UNP P54645 AAPK1_RAT 540 559 DBREF 4EAI B 189 272 UNP O43741 AAKB2_HUMAN 189 272 DBREF 4EAI C 1 330 UNP P80385 AAKG1_RAT 1 330 SEQADV 4EAI GLY A 389 UNP P54645 EXPRESSION TAG SEQADV 4EAI PRO A 390 UNP P54645 EXPRESSION TAG SEQADV 4EAI HIS A 391 UNP P54645 EXPRESSION TAG SEQADV 4EAI MET A 392 UNP P54645 EXPRESSION TAG SEQADV 4EAI GLY A 393 UNP P54645 EXPRESSION TAG SEQADV 4EAI GLY A 469 UNP P54645 LINKER SEQADV 4EAI GLY A 470 UNP P54645 LINKER SEQADV 4EAI GLY A 471 UNP P54645 LINKER SEQADV 4EAI GLY A 472 UNP P54645 LINKER SEQADV 4EAI GLY A 473 UNP P54645 LINKER SEQADV 4EAI GLY A 474 UNP P54645 LINKER SEQADV 4EAI MET B 188 UNP O43741 EXPRESSION TAG SEQRES 1 A 106 GLY PRO HIS MET GLY ALA LYS TRP HIS LEU GLY ILE ARG SEQRES 2 A 106 SER GLN SER ARG PRO ASN ASP ILE MET ALA GLU VAL CYS SEQRES 3 A 106 ARG ALA ILE LYS GLN LEU ASP TYR GLU TRP LYS VAL VAL SEQRES 4 A 106 ASN PRO TYR TYR LEU ARG VAL ARG ARG LYS ASN PRO VAL SEQRES 5 A 106 THR SER THR PHE SER LYS MET SER LEU GLN LEU TYR GLN SEQRES 6 A 106 VAL ASP SER ARG THR TYR LEU LEU ASP PHE ARG SER ILE SEQRES 7 A 106 ASP ASP GLY GLY GLY GLY GLY GLY GLY SER HIS THR ILE SEQRES 8 A 106 GLU PHE PHE GLU MET CYS ALA ASN LEU ILE LYS ILE LEU SEQRES 9 A 106 ALA GLN SEQRES 1 B 85 MET TYR GLY GLN GLU MET TYR ALA PHE ARG SER GLU GLU SEQRES 2 B 85 ARG PHE LYS SER PRO PRO ILE LEU PRO PRO HIS LEU LEU SEQRES 3 B 85 GLN VAL ILE LEU ASN LYS ASP THR ASN ILE SER CYS ASP SEQRES 4 B 85 PRO ALA LEU LEU PRO GLU PRO ASN HIS VAL MET LEU ASN SEQRES 5 B 85 HIS LEU TYR ALA LEU SER ILE LYS ASP SER VAL MET VAL SEQRES 6 B 85 LEU SER ALA THR HIS ARG TYR LYS LYS LYS TYR VAL THR SEQRES 7 B 85 THR LEU LEU TYR LYS PRO ILE SEQRES 1 C 330 MET GLU SER VAL ALA ALA GLU SER ALA PRO ALA PRO GLU SEQRES 2 C 330 ASN GLU HIS SER GLN GLU THR PRO GLU SER ASN SER SER SEQRES 3 C 330 VAL TYR THR THR PHE MET LYS SER HIS ARG CYS TYR ASP SEQRES 4 C 330 LEU ILE PRO THR SER SER LYS LEU VAL VAL PHE ASP THR SEQRES 5 C 330 SER LEU GLN VAL LYS LYS ALA PHE PHE ALA LEU VAL THR SEQRES 6 C 330 ASN GLY VAL ARG ALA ALA PRO LEU TRP ASP SER LYS LYS SEQRES 7 C 330 GLN SER PHE VAL GLY MET LEU THR ILE THR ASP PHE ILE SEQRES 8 C 330 ASN ILE LEU HIS ARG TYR TYR LYS SER ALA LEU VAL GLN SEQRES 9 C 330 ILE TYR GLU LEU GLU GLU HIS LYS ILE GLU THR TRP ARG SEQRES 10 C 330 GLU VAL TYR LEU GLN ASP SER PHE LYS PRO LEU VAL CYS SEQRES 11 C 330 ILE SER PRO ASN ALA SER LEU PHE ASP ALA VAL SER SER SEQRES 12 C 330 LEU ILE ARG ASN LYS ILE HIS ARG LEU PRO VAL ILE ASP SEQRES 13 C 330 PRO GLU SER GLY ASN THR LEU TYR ILE LEU THR HIS LYS SEQRES 14 C 330 ARG ILE LEU LYS PHE LEU LYS LEU PHE ILE THR GLU PHE SEQRES 15 C 330 PRO LYS PRO GLU PHE MET SER LYS SER LEU GLU GLU LEU SEQRES 16 C 330 GLN ILE GLY THR TYR ALA ASN ILE ALA MET VAL ARG THR SEQRES 17 C 330 THR THR PRO VAL TYR VAL ALA LEU GLY ILE PHE VAL GLN SEQRES 18 C 330 HIS ARG VAL SER ALA LEU PRO VAL VAL ASP GLU LYS GLY SEQRES 19 C 330 ARG VAL VAL ASP ILE TYR SER LYS PHE ASP VAL ILE ASN SEQRES 20 C 330 LEU ALA ALA GLU LYS THR TYR ASN ASN LEU ASP VAL SER SEQRES 21 C 330 VAL THR LYS ALA LEU GLN HIS ARG SER HIS TYR PHE GLU SEQRES 22 C 330 GLY VAL LEU LYS CYS TYR LEU HIS GLU THR LEU GLU ALA SEQRES 23 C 330 ILE ILE ASN ARG LEU VAL GLU ALA GLU VAL HIS ARG LEU SEQRES 24 C 330 VAL VAL VAL ASP GLU HIS ASP VAL VAL LYS GLY ILE VAL SEQRES 25 C 330 SER LEU SER ASP ILE LEU GLN ALA LEU VAL LEU THR GLY SEQRES 26 C 330 GLY GLU LYS LYS PRO HET AMP C 401 23 HET AMP C 402 23 HET AMP C 403 23 HETNAM AMP ADENOSINE MONOPHOSPHATE FORMUL 4 AMP 3(C10 H14 N5 O7 P) FORMUL 7 HOH *102(H2 O) HELIX 1 1 ARG A 405 ASP A 421 1 17 HELIX 2 2 SER A 476 LEU A 492 1 17 HELIX 3 3 VAL C 27 SER C 34 1 8 HELIX 4 4 ARG C 36 ILE C 41 5 6 HELIX 5 5 GLN C 55 GLY C 67 1 13 HELIX 6 6 ILE C 87 VAL C 103 1 17 HELIX 7 7 LYS C 112 TYR C 120 1 9 HELIX 8 8 SER C 136 LYS C 148 1 13 HELIX 9 9 THR C 167 ILE C 179 1 13 HELIX 10 10 PRO C 185 LYS C 190 5 6 HELIX 11 11 SER C 191 GLN C 196 1 6 HELIX 12 12 PRO C 211 ARG C 223 1 13 HELIX 13 13 PHE C 243 ALA C 250 5 8 HELIX 14 14 SER C 260 LEU C 265 1 6 HELIX 15 15 THR C 283 GLU C 295 1 13 HELIX 16 16 LEU C 314 LEU C 323 1 10 SHEET 1 A 8 VAL B 215 LEU B 217 0 SHEET 2 A 8 LYS A 395 LEU A 398 -1 N TRP A 396 O ILE B 216 SHEET 3 A 8 TYR B 242 LEU B 244 -1 O ALA B 243 N HIS A 397 SHEET 4 A 8 MET B 251 TYR B 259 -1 O SER B 254 N TYR B 242 SHEET 5 A 8 LYS B 262 LYS B 270 -1 O LYS B 270 N MET B 251 SHEET 6 A 8 SER C 44 ASP C 51 1 O VAL C 49 N LEU B 267 SHEET 7 A 8 ALA C 70 TRP C 74 1 O TRP C 74 N PHE C 50 SHEET 8 A 8 PHE C 81 THR C 86 -1 O GLY C 83 N LEU C 73 SHEET 1 B 5 ILE A 400 SER A 402 0 SHEET 2 B 5 TYR A 459 SER A 465 -1 O LEU A 461 N ILE A 400 SHEET 3 B 5 PHE A 444 GLN A 453 -1 N GLN A 450 O ASP A 462 SHEET 4 B 5 TYR A 431 LYS A 437 -1 N LEU A 432 O LEU A 449 SHEET 5 B 5 GLU A 423 ASN A 428 -1 N LYS A 425 O ARG A 433 SHEET 1 C 2 LEU C 152 ILE C 155 0 SHEET 2 C 2 THR C 162 LEU C 166 -1 O LEU C 163 N VAL C 154 SHEET 1 D 3 VAL C 206 ARG C 207 0 SHEET 2 D 3 ALA C 226 VAL C 230 1 O VAL C 230 N VAL C 206 SHEET 3 D 3 VAL C 236 SER C 241 -1 O ASP C 238 N VAL C 229 SHEET 1 E 3 LYS C 277 CYS C 278 0 SHEET 2 E 3 ARG C 298 VAL C 302 1 O VAL C 302 N CYS C 278 SHEET 3 E 3 VAL C 308 SER C 313 -1 O VAL C 312 N LEU C 299 CISPEP 1 PHE C 182 PRO C 183 0 6.19 SITE 1 AC1 15 ARG C 69 LYS C 169 ILE C 239 SER C 241 SITE 2 AC1 15 PHE C 243 ASP C 244 ARG C 268 PHE C 272 SITE 3 AC1 15 GLY C 274 VAL C 275 LEU C 276 VAL C 296 SITE 4 AC1 15 HIS C 297 ARG C 298 HOH C 558 SITE 1 AC2 15 MET C 84 THR C 86 THR C 88 ASP C 89 SITE 2 AC2 15 LYS C 126 PRO C 127 LEU C 128 VAL C 129 SITE 3 AC2 15 ILE C 149 HIS C 150 ARG C 151 PRO C 153 SITE 4 AC2 15 HOH C 508 HOH C 528 HOH C 536 SITE 1 AC3 13 HIS C 150 THR C 199 ILE C 203 ALA C 204 SITE 2 AC3 13 VAL C 224 SER C 225 ALA C 226 HIS C 297 SITE 3 AC3 13 SER C 313 SER C 315 ASP C 316 HOH C 516 SITE 4 AC3 13 HOH C 518 CRYST1 97.594 115.334 48.522 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010247 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008670 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020609 0.00000