HEADER TRANSFERASE/TRANSFERASE INHIBITOR 22-MAR-12 4EAQ TITLE CRYSTAL STRUCTURE OF THYMIDYLATE KINASE FROM STAPHYLOCOCCUS AUREUS IN TITLE 2 COMPLEX WITH 3'-AZIDO-3'-DEOXYTHYMIDINE-5'-MONOPHOSPHATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: THYMIDYLATE KINASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: DTMP KINASE; COMPND 5 EC: 2.7.4.9; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS SUBSP. AUREUS; SOURCE 3 ORGANISM_TAXID: 158878; SOURCE 4 STRAIN: MU50; SOURCE 5 GENE: TMK, SAV0482; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)MAGIC; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS STRUCTURAL GENOMICS, PSI-BIOLOGY, MIDWEST CENTER FOR STRUCTURAL KEYWDS 2 GENOMICS, MCSG, MTBI, THYMIDYLATE KINASE, TRANSFERASE, TRANSFERASE- KEYWDS 3 TRANSFERASE INHIBITOR COMPLEX, STRUCTURES OF MTB PROTEINS CONFERRING KEYWDS 4 SUSCEPTIBILITY TO KNOWN MTB INHIBITORS EXPDTA X-RAY DIFFRACTION AUTHOR E.V.FILIPPOVA,G.MINASOV,L.SHUVALOVA,O.KIRYUKHINA,R.JEDRZEJCZAK, AUTHOR 2 G.BABNIGG,E.RUBIN,J.SACCHETTINI,A.JOACHIMIAK,W.F.ANDERSON,MIDWEST AUTHOR 3 CENTER FOR STRUCTURAL GENOMICS (MCSG),STRUCTURES OF MTB PROTEINS AUTHOR 4 CONFERRING SUSCEPTIBILITY TO KNOWN MTB INHIBITORS (MTBI) REVDAT 4 13-SEP-23 4EAQ 1 REMARK SEQADV REVDAT 3 15-NOV-17 4EAQ 1 REMARK REVDAT 2 10-OCT-12 4EAQ 1 AUTHOR REVDAT 1 11-APR-12 4EAQ 0 JRNL AUTH E.V.FILIPPOVA,G.MINASOV,L.SHUVALOVA,O.KIRYUKHINA, JRNL AUTH 2 R.JEDRZEJCZAK,A.JOACHIMIAK,W.F.ANDERSON JRNL TITL CRYSTAL STRUCTURE OF THYMIDYLATE KINASE FROM STAPHYLOCOCCUS JRNL TITL 2 AUREUS IN COMPLEX WITH JRNL TITL 3 3'-AZIDO-3'-DEOXYTHYMIDINE-5'-MONOPHOSPHATE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 35229 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1848 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.90 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2389 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.50 REMARK 3 BIN R VALUE (WORKING SET) : 0.2900 REMARK 3 BIN FREE R VALUE SET COUNT : 119 REMARK 3 BIN FREE R VALUE : 0.3020 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3196 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 46 REMARK 3 SOLVENT ATOMS : 143 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 42.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.53000 REMARK 3 B22 (A**2) : 4.31000 REMARK 3 B33 (A**2) : -2.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.87000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.135 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.135 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.101 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.060 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.970 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.945 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3308 ; 0.012 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2256 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4469 ; 1.772 ; 1.987 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5502 ; 1.036 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 397 ; 2.801 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 164 ;32.524 ;24.451 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 602 ;10.836 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 25 ;17.205 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 502 ; 0.124 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3635 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 650 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -4 A 27 REMARK 3 ORIGIN FOR THE GROUP (A): -10.4317 0.0282 28.3219 REMARK 3 T TENSOR REMARK 3 T11: 0.1329 T22: 0.0582 REMARK 3 T33: 0.2094 T12: -0.0268 REMARK 3 T13: -0.0163 T23: -0.0217 REMARK 3 L TENSOR REMARK 3 L11: 7.9628 L22: 1.0420 REMARK 3 L33: 2.5910 L12: -0.0541 REMARK 3 L13: -0.4336 L23: -0.7054 REMARK 3 S TENSOR REMARK 3 S11: 0.0161 S12: 0.5415 S13: 0.2207 REMARK 3 S21: -0.0218 S22: -0.0773 S23: 0.1773 REMARK 3 S31: -0.0331 S32: -0.0438 S33: 0.0612 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 28 A 83 REMARK 3 ORIGIN FOR THE GROUP (A): -1.9952 2.0479 42.4300 REMARK 3 T TENSOR REMARK 3 T11: 0.1803 T22: 0.0070 REMARK 3 T33: 0.2244 T12: -0.0058 REMARK 3 T13: 0.0075 T23: 0.0010 REMARK 3 L TENSOR REMARK 3 L11: 2.7732 L22: 0.8803 REMARK 3 L33: 3.6872 L12: -0.4038 REMARK 3 L13: 1.3820 L23: -0.3445 REMARK 3 S TENSOR REMARK 3 S11: -0.2003 S12: -0.0688 S13: 0.0855 REMARK 3 S21: 0.1003 S22: -0.0057 S23: 0.0747 REMARK 3 S31: -0.2472 S32: 0.0802 S33: 0.2060 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 84 A 168 REMARK 3 ORIGIN FOR THE GROUP (A): 5.6015 -6.2151 31.8941 REMARK 3 T TENSOR REMARK 3 T11: 0.1497 T22: 0.0862 REMARK 3 T33: 0.1843 T12: -0.0086 REMARK 3 T13: -0.0016 T23: 0.0185 REMARK 3 L TENSOR REMARK 3 L11: 3.1273 L22: 1.1296 REMARK 3 L33: 1.9436 L12: -0.3802 REMARK 3 L13: 0.0885 L23: 0.2966 REMARK 3 S TENSOR REMARK 3 S11: -0.0736 S12: 0.3912 S13: 0.0382 REMARK 3 S21: 0.0122 S22: 0.0127 S23: -0.0307 REMARK 3 S31: 0.0822 S32: 0.2737 S33: 0.0608 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 169 A 204 REMARK 3 ORIGIN FOR THE GROUP (A): -6.6961 -9.1186 23.1710 REMARK 3 T TENSOR REMARK 3 T11: 0.1796 T22: 0.1902 REMARK 3 T33: 0.1903 T12: -0.0457 REMARK 3 T13: -0.0321 T23: -0.0414 REMARK 3 L TENSOR REMARK 3 L11: 4.0723 L22: 1.6650 REMARK 3 L33: 1.4212 L12: -0.7106 REMARK 3 L13: -0.4283 L23: 0.3014 REMARK 3 S TENSOR REMARK 3 S11: -0.0117 S12: 0.7180 S13: -0.2039 REMARK 3 S21: -0.1449 S22: -0.0868 S23: 0.1779 REMARK 3 S31: 0.1802 S32: -0.1636 S33: 0.0985 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 33 REMARK 3 ORIGIN FOR THE GROUP (A): 19.5316 -3.5848 74.5958 REMARK 3 T TENSOR REMARK 3 T11: 0.1634 T22: 0.5815 REMARK 3 T33: 0.1200 T12: 0.0318 REMARK 3 T13: -0.0899 T23: 0.0330 REMARK 3 L TENSOR REMARK 3 L11: 7.5493 L22: 3.2021 REMARK 3 L33: 9.8213 L12: -1.3997 REMARK 3 L13: -2.6909 L23: 1.3807 REMARK 3 S TENSOR REMARK 3 S11: -0.1241 S12: -0.6788 S13: 0.5033 REMARK 3 S21: 0.3608 S22: 0.2230 S23: -0.4990 REMARK 3 S31: -0.1838 S32: 1.5064 S33: -0.0989 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 34 B 131 REMARK 3 ORIGIN FOR THE GROUP (A): 10.0712 -4.5274 60.3884 REMARK 3 T TENSOR REMARK 3 T11: 0.1189 T22: 0.1887 REMARK 3 T33: 0.0806 T12: 0.0059 REMARK 3 T13: 0.0060 T23: 0.0045 REMARK 3 L TENSOR REMARK 3 L11: 2.4304 L22: 1.1726 REMARK 3 L33: 6.9204 L12: -0.1315 REMARK 3 L13: 2.3656 L23: -0.6554 REMARK 3 S TENSOR REMARK 3 S11: -0.1820 S12: -0.2959 S13: 0.1274 REMARK 3 S21: 0.0734 S22: 0.0161 S23: -0.0769 REMARK 3 S31: -0.0485 S32: 0.4450 S33: 0.1659 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 132 B 173 REMARK 3 ORIGIN FOR THE GROUP (A): -1.7924 -5.3976 76.6018 REMARK 3 T TENSOR REMARK 3 T11: 0.1511 T22: 0.5000 REMARK 3 T33: 0.0699 T12: -0.0074 REMARK 3 T13: 0.0121 T23: 0.0837 REMARK 3 L TENSOR REMARK 3 L11: 2.9308 L22: 5.0186 REMARK 3 L33: 5.7918 L12: -0.3680 REMARK 3 L13: -2.7106 L23: 1.2872 REMARK 3 S TENSOR REMARK 3 S11: 0.0725 S12: -0.1266 S13: 0.1022 REMARK 3 S21: 0.1639 S22: -0.0290 S23: 0.1197 REMARK 3 S31: 0.2909 S32: -0.8096 S33: -0.0435 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 174 B 204 REMARK 3 ORIGIN FOR THE GROUP (A): 16.8728 -12.3171 79.0347 REMARK 3 T TENSOR REMARK 3 T11: 0.3551 T22: 0.5101 REMARK 3 T33: 0.0640 T12: 0.2642 REMARK 3 T13: -0.0063 T23: 0.1006 REMARK 3 L TENSOR REMARK 3 L11: 3.5843 L22: 3.0607 REMARK 3 L33: 6.7547 L12: -0.7278 REMARK 3 L13: -0.5621 L23: 0.9250 REMARK 3 S TENSOR REMARK 3 S11: -0.0905 S12: -0.5694 S13: -0.0995 REMARK 3 S21: 0.1821 S22: 0.1243 S23: -0.1318 REMARK 3 S31: 0.8586 S32: 1.0199 S33: -0.0338 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4EAQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-MAR-12. REMARK 100 THE DEPOSITION ID IS D_1000071382. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-MAR-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97856 REMARK 200 MONOCHROMATOR : SI-111 CHANNEL REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37093 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.04800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.88 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : 0.52000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.010 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 4DWJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.68 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M MGCL2, 0.1 M TRIS, 25% PEG3350, REMARK 280 PH 8.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 31.35200 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3190 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18620 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -23 REMARK 465 HIS A -22 REMARK 465 HIS A -21 REMARK 465 HIS A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 SER A -16 REMARK 465 SER A -15 REMARK 465 GLY A -14 REMARK 465 VAL A -13 REMARK 465 ASP A -12 REMARK 465 LEU A -11 REMARK 465 GLY A -10 REMARK 465 THR A -9 REMARK 465 GLU A -8 REMARK 465 ASN A -7 REMARK 465 LEU A -6 REMARK 465 TYR A -5 REMARK 465 GLY A 54 REMARK 465 ASN A 55 REMARK 465 ASP A 56 REMARK 465 SER A 146 REMARK 465 ARG A 147 REMARK 465 ASP A 148 REMARK 465 GLN A 149 REMARK 465 ASN A 150 REMARK 465 ILE A 205 REMARK 465 MET B -23 REMARK 465 HIS B -22 REMARK 465 HIS B -21 REMARK 465 HIS B -20 REMARK 465 HIS B -19 REMARK 465 HIS B -18 REMARK 465 HIS B -17 REMARK 465 SER B -16 REMARK 465 SER B -15 REMARK 465 GLY B -14 REMARK 465 VAL B -13 REMARK 465 ASP B -12 REMARK 465 LEU B -11 REMARK 465 GLY B -10 REMARK 465 THR B -9 REMARK 465 GLU B -8 REMARK 465 ASN B -7 REMARK 465 LEU B -6 REMARK 465 TYR B -5 REMARK 465 PHE B -4 REMARK 465 GLN B -3 REMARK 465 SER B -2 REMARK 465 ASN B -1 REMARK 465 ALA B 0 REMARK 465 MET B 1 REMARK 465 SER B 146 REMARK 465 ARG B 147 REMARK 465 ASP B 148 REMARK 465 GLN B 149 REMARK 465 ASN B 150 REMARK 465 ARG B 151 REMARK 465 ILE B 205 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 52 -61.83 -121.36 REMARK 500 LYS A 77 -54.57 -125.26 REMARK 500 ARG A 92 146.62 83.54 REMARK 500 TYR A 93 -147.54 -164.11 REMARK 500 LYS B 77 -50.53 -125.91 REMARK 500 ARG B 92 144.58 86.01 REMARK 500 TYR B 93 -146.34 -159.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATM A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATM B 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC105704 RELATED DB: TARGETTRACK REMARK 900 RELATED ID: 4DWJ RELATED DB: PDB REMARK 900 RELATED ID: MCSG-APC105704 RELATED DB: TARGETTRACK DBREF 4EAQ A 1 205 UNP P65248 KTHY_STAAM 1 205 DBREF 4EAQ B 1 205 UNP P65248 KTHY_STAAM 1 205 SEQADV 4EAQ MET A -23 UNP P65248 EXPRESSION TAG SEQADV 4EAQ HIS A -22 UNP P65248 EXPRESSION TAG SEQADV 4EAQ HIS A -21 UNP P65248 EXPRESSION TAG SEQADV 4EAQ HIS A -20 UNP P65248 EXPRESSION TAG SEQADV 4EAQ HIS A -19 UNP P65248 EXPRESSION TAG SEQADV 4EAQ HIS A -18 UNP P65248 EXPRESSION TAG SEQADV 4EAQ HIS A -17 UNP P65248 EXPRESSION TAG SEQADV 4EAQ SER A -16 UNP P65248 EXPRESSION TAG SEQADV 4EAQ SER A -15 UNP P65248 EXPRESSION TAG SEQADV 4EAQ GLY A -14 UNP P65248 EXPRESSION TAG SEQADV 4EAQ VAL A -13 UNP P65248 EXPRESSION TAG SEQADV 4EAQ ASP A -12 UNP P65248 EXPRESSION TAG SEQADV 4EAQ LEU A -11 UNP P65248 EXPRESSION TAG SEQADV 4EAQ GLY A -10 UNP P65248 EXPRESSION TAG SEQADV 4EAQ THR A -9 UNP P65248 EXPRESSION TAG SEQADV 4EAQ GLU A -8 UNP P65248 EXPRESSION TAG SEQADV 4EAQ ASN A -7 UNP P65248 EXPRESSION TAG SEQADV 4EAQ LEU A -6 UNP P65248 EXPRESSION TAG SEQADV 4EAQ TYR A -5 UNP P65248 EXPRESSION TAG SEQADV 4EAQ PHE A -4 UNP P65248 EXPRESSION TAG SEQADV 4EAQ GLN A -3 UNP P65248 EXPRESSION TAG SEQADV 4EAQ SER A -2 UNP P65248 EXPRESSION TAG SEQADV 4EAQ ASN A -1 UNP P65248 EXPRESSION TAG SEQADV 4EAQ ALA A 0 UNP P65248 EXPRESSION TAG SEQADV 4EAQ MET B -23 UNP P65248 EXPRESSION TAG SEQADV 4EAQ HIS B -22 UNP P65248 EXPRESSION TAG SEQADV 4EAQ HIS B -21 UNP P65248 EXPRESSION TAG SEQADV 4EAQ HIS B -20 UNP P65248 EXPRESSION TAG SEQADV 4EAQ HIS B -19 UNP P65248 EXPRESSION TAG SEQADV 4EAQ HIS B -18 UNP P65248 EXPRESSION TAG SEQADV 4EAQ HIS B -17 UNP P65248 EXPRESSION TAG SEQADV 4EAQ SER B -16 UNP P65248 EXPRESSION TAG SEQADV 4EAQ SER B -15 UNP P65248 EXPRESSION TAG SEQADV 4EAQ GLY B -14 UNP P65248 EXPRESSION TAG SEQADV 4EAQ VAL B -13 UNP P65248 EXPRESSION TAG SEQADV 4EAQ ASP B -12 UNP P65248 EXPRESSION TAG SEQADV 4EAQ LEU B -11 UNP P65248 EXPRESSION TAG SEQADV 4EAQ GLY B -10 UNP P65248 EXPRESSION TAG SEQADV 4EAQ THR B -9 UNP P65248 EXPRESSION TAG SEQADV 4EAQ GLU B -8 UNP P65248 EXPRESSION TAG SEQADV 4EAQ ASN B -7 UNP P65248 EXPRESSION TAG SEQADV 4EAQ LEU B -6 UNP P65248 EXPRESSION TAG SEQADV 4EAQ TYR B -5 UNP P65248 EXPRESSION TAG SEQADV 4EAQ PHE B -4 UNP P65248 EXPRESSION TAG SEQADV 4EAQ GLN B -3 UNP P65248 EXPRESSION TAG SEQADV 4EAQ SER B -2 UNP P65248 EXPRESSION TAG SEQADV 4EAQ ASN B -1 UNP P65248 EXPRESSION TAG SEQADV 4EAQ ALA B 0 UNP P65248 EXPRESSION TAG SEQRES 1 A 229 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 229 GLY THR GLU ASN LEU TYR PHE GLN SER ASN ALA MET SER SEQRES 3 A 229 ALA PHE ILE THR PHE GLU GLY PRO GLU GLY SER GLY LYS SEQRES 4 A 229 THR THR VAL ILE ASN GLU VAL TYR HIS ARG LEU VAL LYS SEQRES 5 A 229 ASP TYR ASP VAL ILE MET THR ARG GLU PRO GLY GLY VAL SEQRES 6 A 229 PRO THR GLY GLU GLU ILE ARG LYS ILE VAL LEU GLU GLY SEQRES 7 A 229 ASN ASP MET ASP ILE ARG THR GLU ALA MET LEU PHE ALA SEQRES 8 A 229 ALA SER ARG ARG GLU HIS LEU VAL LEU LYS VAL ILE PRO SEQRES 9 A 229 ALA LEU LYS GLU GLY LYS VAL VAL LEU CYS ASP ARG TYR SEQRES 10 A 229 ILE ASP SER SER LEU ALA TYR GLN GLY TYR ALA ARG GLY SEQRES 11 A 229 ILE GLY VAL GLU GLU VAL ARG ALA LEU ASN GLU PHE ALA SEQRES 12 A 229 ILE ASN GLY LEU TYR PRO ASP LEU THR ILE TYR LEU ASN SEQRES 13 A 229 VAL SER ALA GLU VAL GLY ARG GLU ARG ILE ILE LYS ASN SEQRES 14 A 229 SER ARG ASP GLN ASN ARG LEU ASP GLN GLU ASP LEU LYS SEQRES 15 A 229 PHE HIS GLU LYS VAL ILE GLU GLY TYR GLN GLU ILE ILE SEQRES 16 A 229 HIS ASN GLU SER GLN ARG PHE LYS SER VAL ASN ALA ASP SEQRES 17 A 229 GLN PRO LEU GLU ASN VAL VAL GLU ASP THR TYR GLN THR SEQRES 18 A 229 ILE ILE LYS TYR LEU GLU LYS ILE SEQRES 1 B 229 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 B 229 GLY THR GLU ASN LEU TYR PHE GLN SER ASN ALA MET SER SEQRES 3 B 229 ALA PHE ILE THR PHE GLU GLY PRO GLU GLY SER GLY LYS SEQRES 4 B 229 THR THR VAL ILE ASN GLU VAL TYR HIS ARG LEU VAL LYS SEQRES 5 B 229 ASP TYR ASP VAL ILE MET THR ARG GLU PRO GLY GLY VAL SEQRES 6 B 229 PRO THR GLY GLU GLU ILE ARG LYS ILE VAL LEU GLU GLY SEQRES 7 B 229 ASN ASP MET ASP ILE ARG THR GLU ALA MET LEU PHE ALA SEQRES 8 B 229 ALA SER ARG ARG GLU HIS LEU VAL LEU LYS VAL ILE PRO SEQRES 9 B 229 ALA LEU LYS GLU GLY LYS VAL VAL LEU CYS ASP ARG TYR SEQRES 10 B 229 ILE ASP SER SER LEU ALA TYR GLN GLY TYR ALA ARG GLY SEQRES 11 B 229 ILE GLY VAL GLU GLU VAL ARG ALA LEU ASN GLU PHE ALA SEQRES 12 B 229 ILE ASN GLY LEU TYR PRO ASP LEU THR ILE TYR LEU ASN SEQRES 13 B 229 VAL SER ALA GLU VAL GLY ARG GLU ARG ILE ILE LYS ASN SEQRES 14 B 229 SER ARG ASP GLN ASN ARG LEU ASP GLN GLU ASP LEU LYS SEQRES 15 B 229 PHE HIS GLU LYS VAL ILE GLU GLY TYR GLN GLU ILE ILE SEQRES 16 B 229 HIS ASN GLU SER GLN ARG PHE LYS SER VAL ASN ALA ASP SEQRES 17 B 229 GLN PRO LEU GLU ASN VAL VAL GLU ASP THR TYR GLN THR SEQRES 18 B 229 ILE ILE LYS TYR LEU GLU LYS ILE HET ATM A 301 23 HET ATM B 301 23 HETNAM ATM 3'-AZIDO-3'-DEOXYTHYMIDINE-5'-MONOPHOSPHATE FORMUL 3 ATM 2(C10 H14 N5 O7 P) FORMUL 5 HOH *143(H2 O) HELIX 1 1 GLY A 14 VAL A 27 1 14 HELIX 2 2 VAL A 41 VAL A 51 1 11 HELIX 3 3 ASP A 58 LYS A 77 1 20 HELIX 4 4 LYS A 77 GLU A 84 1 8 HELIX 5 5 TYR A 93 GLN A 101 1 9 HELIX 6 6 GLY A 108 ASN A 121 1 14 HELIX 7 7 SER A 134 ASN A 145 1 12 HELIX 8 8 ASP A 153 ILE A 171 1 19 HELIX 9 9 PRO A 186 GLU A 203 1 18 HELIX 10 10 GLY B 14 VAL B 27 1 14 HELIX 11 11 VAL B 41 GLY B 54 1 14 HELIX 12 12 ASP B 58 LYS B 77 1 20 HELIX 13 13 LYS B 77 GLU B 84 1 8 HELIX 14 14 TYR B 93 GLN B 101 1 9 HELIX 15 15 GLY B 108 ASN B 121 1 14 HELIX 16 16 SER B 134 ASN B 145 1 12 HELIX 17 17 ASP B 153 GLU B 174 1 22 HELIX 18 18 PRO B 186 GLU B 203 1 18 SHEET 1 A 5 VAL A 32 THR A 35 0 SHEET 2 A 5 VAL A 87 ASP A 91 1 O LEU A 89 N ILE A 33 SHEET 3 A 5 ALA A 3 GLU A 8 1 N ALA A 3 O VAL A 88 SHEET 4 A 5 LEU A 127 ASN A 132 1 O ILE A 129 N THR A 6 SHEET 5 A 5 PHE A 178 ASN A 182 1 O LYS A 179 N TYR A 130 SHEET 1 B 5 VAL B 32 ARG B 36 0 SHEET 2 B 5 VAL B 87 ASP B 91 1 O LEU B 89 N ILE B 33 SHEET 3 B 5 ALA B 3 GLU B 8 1 N ALA B 3 O VAL B 88 SHEET 4 B 5 LEU B 127 ASN B 132 1 O ILE B 129 N THR B 6 SHEET 5 B 5 PHE B 178 ASN B 182 1 O VAL B 181 N TYR B 130 CISPEP 1 GLU A 37 PRO A 38 0 -1.91 CISPEP 2 GLU B 37 PRO B 38 0 0.46 SITE 1 AC1 12 PHE A -4 GLU A 11 LYS A 15 ARG A 36 SITE 2 AC1 12 GLU A 37 PHE A 66 ARG A 70 ARG A 92 SITE 3 AC1 12 SER A 97 TYR A 100 GLN A 101 HOH A 481 SITE 1 AC2 12 GLU B 11 LYS B 15 ARG B 36 GLU B 37 SITE 2 AC2 12 ARG B 48 PHE B 66 ARG B 70 ARG B 92 SITE 3 AC2 12 SER B 97 TYR B 100 GLN B 101 HOH B 427 CRYST1 48.207 62.704 73.806 90.00 97.84 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020744 0.000000 0.002855 0.00000 SCALE2 0.000000 0.015948 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013677 0.00000