HEADER TRANSFERASE 23-MAR-12 4EBJ TITLE CRYSTAL STRUCTURE OF AMINOGLYCOSIDE 4'-O-ADENYLYLTRANSFERASE ANT(4')- TITLE 2 IIB, APO COMPND MOL_ID: 1; COMPND 2 MOLECULE: AMINOGLYCOSIDE NUCLEOTIDYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 2-251; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 287; SOURCE 4 STRAIN: BM4530; SOURCE 5 GENE: ANT(4')-IIB, ANT4'-IIB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: P15TV LIC KEYWDS STRUCTURAL GENOMICS, CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS KEYWDS 2 DISEASES, CSGID, NIAID, NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS KEYWDS 3 DISEASES, ALPHA/BETA PROTEIN, NUCLEOTIDYLTRANSFERASE (NT) DOMAIN, KEYWDS 4 ANTIBIOTIC RESISTANCE, AMINOGLYCOSIDE 4'-O-ADENYLYLTRANSFERASE, KEYWDS 5 AMINOGLYCOSIDE ANTIBIOTICS, TOBRAMYCIN, AMIKACIN, INTRACELLULAR, KEYWDS 6 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR P.J.STOGIOS,Z.WAWRZAK,G.MINASOV,E.EVDOKIMOVA,O.EGOROVA,V.YIM, AUTHOR 2 M.KUDRITSKA,P.COURVALIN,A.SAVCHENKO,W.F.ANDERSON,CENTER FOR AUTHOR 3 STRUCTURAL GENOMICS OF INFECTIOUS DISEASES (CSGID) REVDAT 2 20-NOV-24 4EBJ 1 REMARK SEQADV LINK REVDAT 1 04-APR-12 4EBJ 0 JRNL AUTH P.J.STOGIOS,Z.WAWRZAK,G.MINASOV,E.EVDOKIMOVA,O.EGOROVA, JRNL AUTH 2 V.YIM,M.KUDRITSKA,P.COURVALIN,A.SAVCHENKO,W.F.ANDERSON, JRNL AUTH 3 CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES JRNL AUTH 4 (CSGID) JRNL TITL CRYSTAL STRUCTURE OF AMINOGLYCOSIDE 4'-O-ADENYLYLTRANSFERASE JRNL TITL 2 ANT(4')-IIB, APO JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.3_928) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.96 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.1 REMARK 3 NUMBER OF REFLECTIONS : 77704 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.167 REMARK 3 R VALUE (WORKING SET) : 0.166 REMARK 3 FREE R VALUE : 0.192 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 3895 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.9681 - 4.8470 1.00 2944 156 0.1909 0.1719 REMARK 3 2 4.8470 - 3.8501 1.00 2834 149 0.1370 0.1581 REMARK 3 3 3.8501 - 3.3643 1.00 2790 146 0.1543 0.1747 REMARK 3 4 3.3643 - 3.0570 1.00 2784 147 0.1708 0.1772 REMARK 3 5 3.0570 - 2.8381 1.00 2768 147 0.1696 0.2003 REMARK 3 6 2.8381 - 2.6709 1.00 2741 144 0.1622 0.1820 REMARK 3 7 2.6709 - 2.5372 1.00 2757 145 0.1598 0.1782 REMARK 3 8 2.5372 - 2.4268 0.99 2740 145 0.1560 0.2133 REMARK 3 9 2.4268 - 2.3335 0.99 2722 143 0.1533 0.1802 REMARK 3 10 2.3335 - 2.2530 0.99 2706 142 0.1538 0.1943 REMARK 3 11 2.2530 - 2.1825 0.99 2709 141 0.1476 0.1912 REMARK 3 12 2.1825 - 2.1202 0.99 2691 143 0.1544 0.1795 REMARK 3 13 2.1202 - 2.0644 0.99 2686 142 0.1604 0.1857 REMARK 3 14 2.0644 - 2.0140 0.98 2671 138 0.1556 0.1987 REMARK 3 15 2.0140 - 1.9683 0.98 2670 139 0.1564 0.1845 REMARK 3 16 1.9683 - 1.9264 0.97 2659 142 0.1585 0.1887 REMARK 3 17 1.9264 - 1.8878 0.96 2610 134 0.1624 0.2252 REMARK 3 18 1.8878 - 1.8522 0.96 2600 142 0.1581 0.1787 REMARK 3 19 1.8522 - 1.8192 0.95 2577 138 0.1646 0.2150 REMARK 3 20 1.8192 - 1.7883 0.94 2555 131 0.1732 0.2333 REMARK 3 21 1.7883 - 1.7595 0.94 2549 132 0.1767 0.2076 REMARK 3 22 1.7595 - 1.7324 0.93 2510 133 0.1912 0.2147 REMARK 3 23 1.7324 - 1.7069 0.93 2515 131 0.1969 0.2579 REMARK 3 24 1.7069 - 1.6829 0.90 2476 125 0.2027 0.2594 REMARK 3 25 1.6829 - 1.6602 0.91 2448 136 0.2201 0.2590 REMARK 3 26 1.6602 - 1.6386 0.90 2421 132 0.2264 0.2841 REMARK 3 27 1.6386 - 1.6181 0.88 2386 130 0.2405 0.2941 REMARK 3 28 1.6181 - 1.5986 0.84 2290 122 0.2514 0.2948 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.86 REMARK 3 K_SOL : 0.35 REMARK 3 B_SOL : 44.67 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.850 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.56160 REMARK 3 B22 (A**2) : -1.62500 REMARK 3 B33 (A**2) : 2.18660 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 4373 REMARK 3 ANGLE : 1.057 5987 REMARK 3 CHIRALITY : 0.071 674 REMARK 3 PLANARITY : 0.005 779 REMARK 3 DIHEDRAL : 11.282 1634 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND RESI -8:72 REMARK 3 ORIGIN FOR THE GROUP (A): 47.2906 80.0765 14.3498 REMARK 3 T TENSOR REMARK 3 T11: 0.0791 T22: 0.0755 REMARK 3 T33: 0.1321 T12: 0.0572 REMARK 3 T13: -0.0075 T23: 0.0341 REMARK 3 L TENSOR REMARK 3 L11: 1.9558 L22: 1.5895 REMARK 3 L33: 1.9922 L12: 0.6505 REMARK 3 L13: 0.6590 L23: -0.4424 REMARK 3 S TENSOR REMARK 3 S11: -0.0836 S12: 0.1022 S13: 0.1590 REMARK 3 S21: -0.0020 S22: 0.0325 S23: -0.0908 REMARK 3 S31: -0.1691 S32: -0.0282 S33: 0.0090 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND RESI 73:267 REMARK 3 ORIGIN FOR THE GROUP (A): 51.2218 54.7970 31.0443 REMARK 3 T TENSOR REMARK 3 T11: 0.0475 T22: 0.0514 REMARK 3 T33: 0.0486 T12: -0.0169 REMARK 3 T13: -0.0042 T23: -0.0024 REMARK 3 L TENSOR REMARK 3 L11: 0.5694 L22: 0.7724 REMARK 3 L33: 0.4323 L12: -0.1810 REMARK 3 L13: -0.0369 L23: -0.2766 REMARK 3 S TENSOR REMARK 3 S11: -0.0074 S12: 0.0424 S13: -0.0070 REMARK 3 S21: -0.0591 S22: 0.0211 S23: 0.1131 REMARK 3 S31: 0.0315 S32: -0.0735 S33: -0.0179 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN B AND RESI -6:72 REMARK 3 ORIGIN FOR THE GROUP (A): 69.6047 36.7017 26.4106 REMARK 3 T TENSOR REMARK 3 T11: 0.0323 T22: 0.0319 REMARK 3 T33: 0.0487 T12: 0.0404 REMARK 3 T13: -0.0034 T23: -0.0069 REMARK 3 L TENSOR REMARK 3 L11: 0.9630 L22: 1.3646 REMARK 3 L33: 1.0978 L12: 0.1371 REMARK 3 L13: -0.4457 L23: 0.2208 REMARK 3 S TENSOR REMARK 3 S11: -0.0098 S12: -0.1062 S13: -0.1245 REMARK 3 S21: 0.1058 S22: 0.0383 S23: -0.0698 REMARK 3 S31: 0.0351 S32: 0.0141 S33: -0.0112 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN B AND RESI 73:276 REMARK 3 ORIGIN FOR THE GROUP (A): 68.0742 66.6459 24.0175 REMARK 3 T TENSOR REMARK 3 T11: 0.0572 T22: 0.0480 REMARK 3 T33: 0.0728 T12: -0.0198 REMARK 3 T13: -0.0021 T23: 0.0113 REMARK 3 L TENSOR REMARK 3 L11: 0.3713 L22: 0.6746 REMARK 3 L33: 0.2775 L12: -0.1037 REMARK 3 L13: -0.0011 L23: 0.0943 REMARK 3 S TENSOR REMARK 3 S11: 0.0062 S12: 0.0372 S13: 0.0987 REMARK 3 S21: -0.0845 S22: 0.0011 S23: -0.0585 REMARK 3 S31: -0.0768 S32: 0.0683 S33: -0.0075 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4EBJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-MAR-12. REMARK 100 THE DEPOSITION ID IS D_1000071411. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-JUN-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 154555 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 5.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08300 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 27.3100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.63 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.6 REMARK 200 DATA REDUNDANCY IN SHELL : 4.40 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.60400 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.490 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.46 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM SULFATE, 0.1 M MES, 30% REMARK 280 PEG 5K MME, CRYOPROTECTANT: 25% ETHYLENE GLYCOL, PH 6.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 40.22200 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 45.08300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.74100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 45.08300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 40.22200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.74100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7900 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22900 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -78.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -20 REMARK 465 GLY A -19 REMARK 465 SER A -18 REMARK 465 SER A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 SER A -10 REMARK 465 SER A -9 REMARK 465 GLY A -8 REMARK 465 ARG A -7 REMARK 465 MSE B -20 REMARK 465 GLY B -19 REMARK 465 SER B -18 REMARK 465 SER B -17 REMARK 465 HIS B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 SER B -10 REMARK 465 SER B -9 REMARK 465 GLY B -8 REMARK 465 ARG B -7 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O4 SO4 A 303 O HOH A 753 1.99 REMARK 500 O2 SO4 A 304 O HOH A 756 2.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP B 101 145.92 -176.05 REMARK 500 GLU B 124 71.65 -119.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 308 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 309 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 310 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 311 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4EBK RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF AMINOGLYCOSIDE 4'-O-ADENYLYLTRANSFERASE ANT(4') REMARK 900 -IIB, TOBRAMYCIN-BOUND REMARK 900 RELATED ID: IDP91783 RELATED DB: TARGETTRACK REMARK 999 REMARK 999 SEQUENCE REMARK 999 AUTHORS STATE THAT THE CORRECT SEQUENCE DOES NOT CONTAIN ANY REMARK 999 APPARENT CONFLICT DBREF 4EBJ A 2 251 UNP Q83V96 Q83V96_PSEAI 2 251 DBREF 4EBJ B 2 251 UNP Q83V96 Q83V96_PSEAI 2 251 SEQADV 4EBJ MSE A -20 UNP Q83V96 INITIATING METHIONINE SEQADV 4EBJ GLY A -19 UNP Q83V96 EXPRESSION TAG SEQADV 4EBJ SER A -18 UNP Q83V96 EXPRESSION TAG SEQADV 4EBJ SER A -17 UNP Q83V96 EXPRESSION TAG SEQADV 4EBJ HIS A -16 UNP Q83V96 EXPRESSION TAG SEQADV 4EBJ HIS A -15 UNP Q83V96 EXPRESSION TAG SEQADV 4EBJ HIS A -14 UNP Q83V96 EXPRESSION TAG SEQADV 4EBJ HIS A -13 UNP Q83V96 EXPRESSION TAG SEQADV 4EBJ HIS A -12 UNP Q83V96 EXPRESSION TAG SEQADV 4EBJ HIS A -11 UNP Q83V96 EXPRESSION TAG SEQADV 4EBJ SER A -10 UNP Q83V96 EXPRESSION TAG SEQADV 4EBJ SER A -9 UNP Q83V96 EXPRESSION TAG SEQADV 4EBJ GLY A -8 UNP Q83V96 EXPRESSION TAG SEQADV 4EBJ ARG A -7 UNP Q83V96 EXPRESSION TAG SEQADV 4EBJ GLU A -6 UNP Q83V96 EXPRESSION TAG SEQADV 4EBJ ASN A -5 UNP Q83V96 EXPRESSION TAG SEQADV 4EBJ LEU A -4 UNP Q83V96 EXPRESSION TAG SEQADV 4EBJ TYR A -3 UNP Q83V96 EXPRESSION TAG SEQADV 4EBJ PHE A -2 UNP Q83V96 EXPRESSION TAG SEQADV 4EBJ GLN A -1 UNP Q83V96 EXPRESSION TAG SEQADV 4EBJ GLY A 0 UNP Q83V96 EXPRESSION TAG SEQADV 4EBJ VAL A 1 UNP Q83V96 EXPRESSION TAG SEQADV 4EBJ LEU A 111 UNP Q83V96 MET 111 SEE REMARK 999 SEQADV 4EBJ ASP A 127 UNP Q83V96 ASN 127 SEE REMARK 999 SEQADV 4EBJ MSE B -20 UNP Q83V96 INITIATING METHIONINE SEQADV 4EBJ GLY B -19 UNP Q83V96 EXPRESSION TAG SEQADV 4EBJ SER B -18 UNP Q83V96 EXPRESSION TAG SEQADV 4EBJ SER B -17 UNP Q83V96 EXPRESSION TAG SEQADV 4EBJ HIS B -16 UNP Q83V96 EXPRESSION TAG SEQADV 4EBJ HIS B -15 UNP Q83V96 EXPRESSION TAG SEQADV 4EBJ HIS B -14 UNP Q83V96 EXPRESSION TAG SEQADV 4EBJ HIS B -13 UNP Q83V96 EXPRESSION TAG SEQADV 4EBJ HIS B -12 UNP Q83V96 EXPRESSION TAG SEQADV 4EBJ HIS B -11 UNP Q83V96 EXPRESSION TAG SEQADV 4EBJ SER B -10 UNP Q83V96 EXPRESSION TAG SEQADV 4EBJ SER B -9 UNP Q83V96 EXPRESSION TAG SEQADV 4EBJ GLY B -8 UNP Q83V96 EXPRESSION TAG SEQADV 4EBJ ARG B -7 UNP Q83V96 EXPRESSION TAG SEQADV 4EBJ GLU B -6 UNP Q83V96 EXPRESSION TAG SEQADV 4EBJ ASN B -5 UNP Q83V96 EXPRESSION TAG SEQADV 4EBJ LEU B -4 UNP Q83V96 EXPRESSION TAG SEQADV 4EBJ TYR B -3 UNP Q83V96 EXPRESSION TAG SEQADV 4EBJ PHE B -2 UNP Q83V96 EXPRESSION TAG SEQADV 4EBJ GLN B -1 UNP Q83V96 EXPRESSION TAG SEQADV 4EBJ GLY B 0 UNP Q83V96 EXPRESSION TAG SEQADV 4EBJ VAL B 1 UNP Q83V96 EXPRESSION TAG SEQADV 4EBJ LEU B 111 UNP Q83V96 MET 111 SEE REMARK 999 SEQADV 4EBJ ASP B 127 UNP Q83V96 ASN 127 SEE REMARK 999 SEQRES 1 A 272 MSE GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 272 ARG GLU ASN LEU TYR PHE GLN GLY VAL GLN HIS THR ILE SEQRES 3 A 272 ALA ARG TRP VAL ASP ARG LEU ARG GLU GLU TYR ALA ASP SEQRES 4 A 272 ALA VAL ALA ILE LEU LEU LYS GLY SER TYR ALA ARG GLY SEQRES 5 A 272 ASP ALA ALA THR TRP SER ASP ILE ASP PHE ASP VAL LEU SEQRES 6 A 272 VAL SER THR GLN ASP VAL GLU ASP TYR ARG THR TRP ILE SEQRES 7 A 272 GLU PRO VAL GLY ASP ARG LEU VAL HIS ILE SER ALA ALA SEQRES 8 A 272 VAL GLU TRP VAL THR GLY TRP GLU ARG ASP THR VAL ASP SEQRES 9 A 272 PRO SER SER TRP SER TYR GLY LEU PRO THR GLN GLU THR SEQRES 10 A 272 THR ARG LEU MSE TRP ALA ILE ASN ASP GLU THR ARG ARG SEQRES 11 A 272 ARG LEU ASP ARG PRO TYR LYS THR HIS PRO ALA ALA GLU SEQRES 12 A 272 PRO GLU VAL GLU ASP THR VAL GLU ALA LEU GLY LYS ILE SEQRES 13 A 272 ARG ASN ALA ILE ALA ARG GLY ASP ASP LEU GLY VAL TYR SEQRES 14 A 272 GLN SER ALA GLN THR VAL ALA LYS LEU VAL PRO THR LEU SEQRES 15 A 272 LEU ILE PRO ILE ASN PRO PRO VAL THR VAL SER HIS ALA SEQRES 16 A 272 ARG GLN ALA ILE GLU ALA ILE LEU ALA PHE PRO ARG VAL SEQRES 17 A 272 PRO VAL GLY PHE ALA ALA ASP TRP LEU THR CYS LEU GLY SEQRES 18 A 272 LEU VAL GLU GLU ARG SER ALA ARG SER THR ALA ALA ALA SEQRES 19 A 272 ALA GLU ARG MSE VAL ARG GLY VAL LEU GLU MSE LEU PRO SEQRES 20 A 272 THR ASP PRO ASP LEU LEU GLY GLU ASP ILE ALA ARG LEU SEQRES 21 A 272 MSE ASN ALA GLY LEU LEU GLU LYS TYR VAL GLN GLN SEQRES 1 B 272 MSE GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 272 ARG GLU ASN LEU TYR PHE GLN GLY VAL GLN HIS THR ILE SEQRES 3 B 272 ALA ARG TRP VAL ASP ARG LEU ARG GLU GLU TYR ALA ASP SEQRES 4 B 272 ALA VAL ALA ILE LEU LEU LYS GLY SER TYR ALA ARG GLY SEQRES 5 B 272 ASP ALA ALA THR TRP SER ASP ILE ASP PHE ASP VAL LEU SEQRES 6 B 272 VAL SER THR GLN ASP VAL GLU ASP TYR ARG THR TRP ILE SEQRES 7 B 272 GLU PRO VAL GLY ASP ARG LEU VAL HIS ILE SER ALA ALA SEQRES 8 B 272 VAL GLU TRP VAL THR GLY TRP GLU ARG ASP THR VAL ASP SEQRES 9 B 272 PRO SER SER TRP SER TYR GLY LEU PRO THR GLN GLU THR SEQRES 10 B 272 THR ARG LEU MSE TRP ALA ILE ASN ASP GLU THR ARG ARG SEQRES 11 B 272 ARG LEU ASP ARG PRO TYR LYS THR HIS PRO ALA ALA GLU SEQRES 12 B 272 PRO GLU VAL GLU ASP THR VAL GLU ALA LEU GLY LYS ILE SEQRES 13 B 272 ARG ASN ALA ILE ALA ARG GLY ASP ASP LEU GLY VAL TYR SEQRES 14 B 272 GLN SER ALA GLN THR VAL ALA LYS LEU VAL PRO THR LEU SEQRES 15 B 272 LEU ILE PRO ILE ASN PRO PRO VAL THR VAL SER HIS ALA SEQRES 16 B 272 ARG GLN ALA ILE GLU ALA ILE LEU ALA PHE PRO ARG VAL SEQRES 17 B 272 PRO VAL GLY PHE ALA ALA ASP TRP LEU THR CYS LEU GLY SEQRES 18 B 272 LEU VAL GLU GLU ARG SER ALA ARG SER THR ALA ALA ALA SEQRES 19 B 272 ALA GLU ARG MSE VAL ARG GLY VAL LEU GLU MSE LEU PRO SEQRES 20 B 272 THR ASP PRO ASP LEU LEU GLY GLU ASP ILE ALA ARG LEU SEQRES 21 B 272 MSE ASN ALA GLY LEU LEU GLU LYS TYR VAL GLN GLN MODRES 4EBJ MSE A 100 MET SELENOMETHIONINE MODRES 4EBJ MSE A 217 MET SELENOMETHIONINE MODRES 4EBJ MSE A 224 MET SELENOMETHIONINE MODRES 4EBJ MSE A 240 MET SELENOMETHIONINE MODRES 4EBJ MSE B 100 MET SELENOMETHIONINE MODRES 4EBJ MSE B 217 MET SELENOMETHIONINE MODRES 4EBJ MSE B 224 MET SELENOMETHIONINE MODRES 4EBJ MSE B 240 MET SELENOMETHIONINE HET MSE A 100 8 HET MSE A 217 16 HET MSE A 224 8 HET MSE A 240 8 HET MSE B 100 16 HET MSE B 217 8 HET MSE B 224 8 HET MSE B 240 16 HET EDO A 301 4 HET EDO A 302 4 HET SO4 A 303 5 HET SO4 A 304 5 HET SO4 A 305 5 HET EDO B 301 4 HET EDO B 302 4 HET EDO B 303 4 HET EDO B 304 4 HET EDO B 305 4 HET EDO B 306 4 HET EDO B 307 4 HET EDO B 308 4 HET SO4 B 309 5 HET SO4 B 310 5 HET SO4 B 311 5 HETNAM MSE SELENOMETHIONINE HETNAM EDO 1,2-ETHANEDIOL HETNAM SO4 SULFATE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 8(C5 H11 N O2 SE) FORMUL 3 EDO 10(C2 H6 O2) FORMUL 5 SO4 6(O4 S 2-) FORMUL 19 HOH *772(H2 O) HELIX 1 1 GLU A -6 TYR A 16 1 23 HELIX 2 2 GLY A 26 GLY A 31 1 6 HELIX 3 3 VAL A 74 ASP A 80 1 7 HELIX 4 4 THR A 81 ASP A 83 5 3 HELIX 5 5 ASN A 104 ASP A 112 1 9 HELIX 6 6 GLU A 124 GLY A 142 1 19 HELIX 7 7 ASP A 143 ILE A 163 1 21 HELIX 8 8 PRO A 164 ASN A 166 5 3 HELIX 9 9 HIS A 173 ALA A 183 1 11 HELIX 10 10 GLY A 190 GLY A 200 1 11 HELIX 11 11 SER A 206 GLU A 223 1 18 HELIX 12 12 ASP A 228 GLY A 233 1 6 HELIX 13 13 GLY A 233 ALA A 242 1 10 HELIX 14 14 GLY A 243 GLN A 251 1 9 HELIX 15 15 ASN B -5 TYR B 16 1 22 HELIX 16 16 GLY B 26 GLY B 31 1 6 HELIX 17 17 VAL B 74 ASP B 80 1 7 HELIX 18 18 THR B 81 ASP B 83 5 3 HELIX 19 19 ASN B 104 ASP B 112 1 9 HELIX 20 20 GLU B 124 GLY B 142 1 19 HELIX 21 21 ASP B 143 ILE B 163 1 21 HELIX 22 22 PRO B 164 ASN B 166 5 3 HELIX 23 23 HIS B 173 ALA B 183 1 11 HELIX 24 24 GLY B 190 GLY B 200 1 11 HELIX 25 25 SER B 206 GLU B 223 1 18 HELIX 26 26 ASP B 228 GLY B 233 1 6 HELIX 27 27 GLY B 233 ALA B 242 1 10 HELIX 28 28 GLY B 243 GLN B 251 1 9 SHEET 1 A 6 GLU A 51 VAL A 60 0 SHEET 2 A 6 ARG A 63 TRP A 73 -1 O ALA A 69 N ARG A 54 SHEET 3 A 6 ILE A 39 VAL A 45 1 N VAL A 43 O ALA A 70 SHEET 4 A 6 ALA A 19 LYS A 25 -1 N VAL A 20 O LEU A 44 SHEET 5 A 6 THR A 93 ALA A 102 -1 O ARG A 98 N LEU A 24 SHEET 6 A 6 TYR A 115 HIS A 118 -1 O LYS A 116 N GLU A 95 SHEET 1 B 5 GLU B 51 VAL B 60 0 SHEET 2 B 5 ARG B 63 TRP B 73 -1 O ALA B 69 N ARG B 54 SHEET 3 B 5 ILE B 39 VAL B 45 1 N ILE B 39 O SER B 68 SHEET 4 B 5 ALA B 19 LYS B 25 -1 N VAL B 20 O LEU B 44 SHEET 5 B 5 ARG B 98 ALA B 102 -1 O ARG B 98 N LEU B 24 SHEET 1 C 2 THR B 93 THR B 96 0 SHEET 2 C 2 TYR B 115 HIS B 118 -1 O LYS B 116 N GLU B 95 LINK C LEU A 99 N MSE A 100 1555 1555 1.33 LINK C MSE A 100 N TRP A 101 1555 1555 1.33 LINK C ARG A 216 N AMSE A 217 1555 1555 1.33 LINK C ARG A 216 N BMSE A 217 1555 1555 1.32 LINK C AMSE A 217 N VAL A 218 1555 1555 1.33 LINK C BMSE A 217 N VAL A 218 1555 1555 1.33 LINK C GLU A 223 N MSE A 224 1555 1555 1.33 LINK C MSE A 224 N LEU A 225 1555 1555 1.33 LINK C LEU A 239 N MSE A 240 1555 1555 1.33 LINK C MSE A 240 N ASN A 241 1555 1555 1.33 LINK C LEU B 99 N AMSE B 100 1555 1555 1.33 LINK C LEU B 99 N BMSE B 100 1555 1555 1.33 LINK C AMSE B 100 N TRP B 101 1555 1555 1.33 LINK C BMSE B 100 N TRP B 101 1555 1555 1.33 LINK C ARG B 216 N MSE B 217 1555 1555 1.33 LINK C MSE B 217 N VAL B 218 1555 1555 1.33 LINK C GLU B 223 N MSE B 224 1555 1555 1.33 LINK C MSE B 224 N LEU B 225 1555 1555 1.33 LINK C LEU B 239 N AMSE B 240 1555 1555 1.33 LINK C LEU B 239 N BMSE B 240 1555 1555 1.32 LINK C AMSE B 240 N ASN B 241 1555 1555 1.33 LINK C BMSE B 240 N ASN B 241 1555 1555 1.33 SITE 1 AC1 8 PRO A 188 VAL A 189 GLY A 190 PHE A 191 SITE 2 AC1 8 HOH A 419 HOH A 492 HOH A 717 ILE B 103 SITE 1 AC2 5 SER A 85 SER A 86 TRP A 87 HOH A 510 SITE 2 AC2 5 HOH A 644 SITE 1 AC3 10 HIS A 173 ALA A 174 ARG A 175 SO4 A 304 SITE 2 AC3 10 HOH A 540 HOH A 732 HOH A 753 HOH A 754 SITE 3 AC3 10 LYS B 134 HOH B 483 SITE 1 AC4 7 SER A 27 SER A 37 SO4 A 303 HOH A 407 SITE 2 AC4 7 HOH A 753 HOH A 756 ASN B 137 SITE 1 AC5 3 SER A 206 ARG A 208 HOH A 728 SITE 1 AC6 6 LYS A 134 TRP B 87 HIS B 173 ALA B 174 SITE 2 AC6 6 SO4 B 311 HOH B 657 SITE 1 AC7 3 ARG B 219 GLU B 246 HOH B 591 SITE 1 AC8 3 THR B 170 GLU B 179 HOH B 490 SITE 1 AC9 9 TYR A 248 GLN A 251 HOH A 427 TYR B -3 SITE 2 AC9 9 THR B 35 TRP B 36 ARG B 63 LEU B 64 SITE 3 AC9 9 VAL B 65 SITE 1 BC1 3 ARG B 13 GLU B 14 ALA B 17 SITE 1 BC2 4 HOH A 598 ASN B 104 ASP B 105 HOH B 498 SITE 1 BC3 4 GLY B 31 ASP B 32 ALA B 33 HOH B 472 SITE 1 BC4 5 TRP B 8 ARG B 11 LEU B 12 GLU B 15 SITE 2 BC4 5 TRP B 56 SITE 1 BC5 5 SER B 206 ARG B 208 HOH B 570 HOH B 660 SITE 2 BC5 5 HOH B 798 SITE 1 BC6 5 ARG B 208 ARG B 216 HOH B 447 HOH B 581 SITE 2 BC6 5 HOH B 744 SITE 1 BC7 10 LYS A 134 HOH A 422 HIS B 173 ALA B 174 SITE 2 BC7 10 ARG B 175 EDO B 301 HOH B 657 HOH B 739 SITE 3 BC7 10 HOH B 805 HOH B 808 CRYST1 80.444 83.482 90.166 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012431 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011979 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011091 0.00000