HEADER SIGNALING PROTEIN 27-MAR-12 4EDM TITLE CRYSTAL STRUCTURE OF BETA-PARVIN CH2 DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-PARVIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: C-TERMINAL CALPONIN HOMOLOGY DOMAIN; COMPND 5 SYNONYM: AFFIXIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PARVB, CGI-56; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PCDFDUET-1 KEYWDS CALPONIN HOMOLOGY DOMAIN, PROTEIN-PROTEIN INTERACTION, LD MOTIF, KEYWDS 2 INTEGRIN SIGNALING, FOCAL ADHESION, ADAPTOR PROTEIN, PAXILLIN, KEYWDS 3 INTEGRIN LINKED KINASE, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.L.STIEGLER,K.M.DRAHEIM,X.LI,N.E.CHAYEN,D.A.CALDERWOOD,T.J.BOGGON REVDAT 4 28-FEB-24 4EDM 1 REMARK SEQADV REVDAT 3 19-JUN-13 4EDM 1 JRNL REVDAT 2 26-SEP-12 4EDM 1 JRNL REVDAT 1 08-AUG-12 4EDM 0 JRNL AUTH A.L.STIEGLER,K.M.DRAHEIM,X.LI,N.E.CHAYEN,D.A.CALDERWOOD, JRNL AUTH 2 T.J.BOGGON JRNL TITL STRUCTURAL BASIS FOR PAXILLIN BINDING AND FOCAL ADHESION JRNL TITL 2 TARGETING OF BETA-PARVIN. JRNL REF J.BIOL.CHEM. V. 287 32566 2012 JRNL REFN ISSN 0021-9258 JRNL PMID 22869380 JRNL DOI 10.1074/JBC.M112.367342 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 23924 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.214 REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.253 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1228 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1420 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 89.60 REMARK 3 BIN R VALUE (WORKING SET) : 0.3440 REMARK 3 BIN FREE R VALUE SET COUNT : 71 REMARK 3 BIN FREE R VALUE : 0.3110 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2112 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 28 REMARK 3 SOLVENT ATOMS : 116 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 40.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 58.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 6.44000 REMARK 3 B22 (A**2) : -3.55000 REMARK 3 B33 (A**2) : -2.88000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.177 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.164 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.154 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.627 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.943 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2189 ; 0.013 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2949 ; 1.439 ; 1.986 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 257 ; 5.262 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 104 ;33.321 ;24.712 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 394 ;14.535 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 7 ;20.293 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 335 ; 0.097 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1618 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 238 A 250 REMARK 3 ORIGIN FOR THE GROUP (A): 28.7500 37.7580 3.9590 REMARK 3 T TENSOR REMARK 3 T11: 0.3470 T22: 0.5609 REMARK 3 T33: 0.4985 T12: -0.1971 REMARK 3 T13: -0.0963 T23: -0.0822 REMARK 3 L TENSOR REMARK 3 L11: 2.2801 L22: 18.2791 REMARK 3 L33: 27.4985 L12: -4.5769 REMARK 3 L13: -7.4936 L23: 10.1403 REMARK 3 S TENSOR REMARK 3 S11: 0.1084 S12: -0.5645 S13: 0.5393 REMARK 3 S21: -0.0420 S22: 1.1328 S23: -1.5705 REMARK 3 S31: -0.5638 S32: 1.8325 S33: -1.2412 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 251 A 326 REMARK 3 ORIGIN FOR THE GROUP (A): 26.0450 22.6300 20.0730 REMARK 3 T TENSOR REMARK 3 T11: 0.0200 T22: 0.1837 REMARK 3 T33: 0.1483 T12: -0.0092 REMARK 3 T13: 0.0185 T23: -0.0473 REMARK 3 L TENSOR REMARK 3 L11: 1.7093 L22: 7.0994 REMARK 3 L33: 4.1332 L12: -0.3753 REMARK 3 L13: 0.8360 L23: 0.8162 REMARK 3 S TENSOR REMARK 3 S11: -0.0802 S12: 0.1203 S13: -0.0156 REMARK 3 S21: 0.2983 S22: 0.0901 S23: -0.2173 REMARK 3 S31: 0.0126 S32: 0.2197 S33: -0.0099 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 327 A 337 REMARK 3 ORIGIN FOR THE GROUP (A): 12.3830 21.9090 26.4330 REMARK 3 T TENSOR REMARK 3 T11: 0.5076 T22: 0.4769 REMARK 3 T33: 1.1176 T12: -0.2125 REMARK 3 T13: 0.5741 T23: -0.3640 REMARK 3 L TENSOR REMARK 3 L11: 6.9740 L22: 5.0715 REMARK 3 L33: 10.3709 L12: -4.8746 REMARK 3 L13: 1.8461 L23: -4.6289 REMARK 3 S TENSOR REMARK 3 S11: -0.3090 S12: -0.0683 S13: -1.3474 REMARK 3 S21: 0.7395 S22: 0.1448 S23: 1.4246 REMARK 3 S31: -0.2617 S32: -1.0546 S33: 0.1642 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 338 A 364 REMARK 3 ORIGIN FOR THE GROUP (A): 19.6130 28.5820 23.2370 REMARK 3 T TENSOR REMARK 3 T11: 0.1825 T22: 0.1544 REMARK 3 T33: 0.2397 T12: 0.0259 REMARK 3 T13: 0.0398 T23: -0.0798 REMARK 3 L TENSOR REMARK 3 L11: 3.1653 L22: 4.3283 REMARK 3 L33: 12.5464 L12: -0.2457 REMARK 3 L13: 2.6931 L23: 1.4452 REMARK 3 S TENSOR REMARK 3 S11: -0.2965 S12: -0.2024 S13: 0.2630 REMARK 3 S21: 0.5874 S22: 0.0347 S23: 0.5285 REMARK 3 S31: -0.8933 S32: -0.2004 S33: 0.2619 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 235 B 252 REMARK 3 ORIGIN FOR THE GROUP (A): 8.7900 39.0080 20.7440 REMARK 3 T TENSOR REMARK 3 T11: 0.6533 T22: 0.4548 REMARK 3 T33: 0.4759 T12: 0.0720 REMARK 3 T13: -0.0806 T23: -0.0970 REMARK 3 L TENSOR REMARK 3 L11: 13.7170 L22: 4.7880 REMARK 3 L33: 15.0274 L12: -3.8337 REMARK 3 L13: -5.1946 L23: 1.5028 REMARK 3 S TENSOR REMARK 3 S11: -0.2095 S12: -0.4026 S13: 0.0419 REMARK 3 S21: 0.5164 S22: 0.1240 S23: 0.6012 REMARK 3 S31: -0.6029 S32: -1.2796 S33: 0.0856 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 253 B 295 REMARK 3 ORIGIN FOR THE GROUP (A): 11.8870 29.3570 -6.6550 REMARK 3 T TENSOR REMARK 3 T11: 0.2878 T22: 0.2116 REMARK 3 T33: 0.2761 T12: -0.0456 REMARK 3 T13: -0.1098 T23: -0.0199 REMARK 3 L TENSOR REMARK 3 L11: 2.8862 L22: 6.6045 REMARK 3 L33: 6.0247 L12: 0.0442 REMARK 3 L13: 3.1803 L23: 3.4532 REMARK 3 S TENSOR REMARK 3 S11: -0.2625 S12: -0.0890 S13: 0.0643 REMARK 3 S21: -0.2908 S22: -0.0916 S23: 0.5391 REMARK 3 S31: -0.8439 S32: -0.1114 S33: 0.3541 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 296 B 339 REMARK 3 ORIGIN FOR THE GROUP (A): 21.9740 20.6250 -13.3250 REMARK 3 T TENSOR REMARK 3 T11: 0.0793 T22: 0.4042 REMARK 3 T33: 0.3013 T12: -0.0077 REMARK 3 T13: 0.0193 T23: -0.0605 REMARK 3 L TENSOR REMARK 3 L11: 4.0406 L22: 8.4044 REMARK 3 L33: 9.6735 L12: 1.7325 REMARK 3 L13: 2.1450 L23: 2.5209 REMARK 3 S TENSOR REMARK 3 S11: -0.1024 S12: 0.2455 S13: -0.3980 REMARK 3 S21: -0.5735 S22: 0.1469 S23: -0.3704 REMARK 3 S31: -0.0626 S32: 0.7771 S33: -0.0445 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 340 B 364 REMARK 3 ORIGIN FOR THE GROUP (A): 20.4750 30.8830 -4.3040 REMARK 3 T TENSOR REMARK 3 T11: 0.1890 T22: 0.2800 REMARK 3 T33: 0.1778 T12: -0.1041 REMARK 3 T13: -0.0999 T23: -0.0010 REMARK 3 L TENSOR REMARK 3 L11: 4.1444 L22: 2.8515 REMARK 3 L33: 7.8497 L12: 0.2523 REMARK 3 L13: 0.7523 L23: 2.4709 REMARK 3 S TENSOR REMARK 3 S11: -0.0928 S12: -0.0144 S13: 0.0825 REMARK 3 S21: -0.3031 S22: -0.0667 S23: -0.0488 REMARK 3 S31: -0.7718 S32: 0.6078 S33: 0.1594 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 4EDM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-APR-12. REMARK 100 THE DEPOSITION ID IS D_1000071484. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-JUL-10 REMARK 200 TEMPERATURE (KELVIN) : 173 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X6A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.07810 REMARK 200 MONOCHROMATOR : SI(111) CHANNEL CUT REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23924 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : 7.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08200 REMARK 200 FOR THE DATA SET : 25.8910 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.5 REMARK 200 DATA REDUNDANCY IN SHELL : 5.60 REMARK 200 R MERGE FOR SHELL (I) : 0.68000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.905 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.02 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.86 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12% PEG 550 MME, 0.1M TRIS, PH 7.5, REMARK 280 MICROBATCH, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.68000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.85600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 33.71900 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 52.85600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.68000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 33.71900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 232 REMARK 465 ASN A 233 REMARK 465 SER A 234 REMARK 465 GLY A 235 REMARK 465 ARG A 236 REMARK 465 PHE A 237 REMARK 465 GLY B 232 REMARK 465 ASN B 233 REMARK 465 SER B 234 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS A 258 O1 EDO A 402 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 574 O HOH B 541 4555 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 343 22.96 -79.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 403 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4EDL RELATED DB: PDB REMARK 900 RELATED ID: 4EDN RELATED DB: PDB DBREF 4EDM A 235 364 UNP Q9HBI1 PARVB_HUMAN 235 364 DBREF 4EDM B 235 364 UNP Q9HBI1 PARVB_HUMAN 235 364 SEQADV 4EDM GLY A 232 UNP Q9HBI1 EXPRESSION TAG SEQADV 4EDM ASN A 233 UNP Q9HBI1 EXPRESSION TAG SEQADV 4EDM SER A 234 UNP Q9HBI1 EXPRESSION TAG SEQADV 4EDM GLY B 232 UNP Q9HBI1 EXPRESSION TAG SEQADV 4EDM ASN B 233 UNP Q9HBI1 EXPRESSION TAG SEQADV 4EDM SER B 234 UNP Q9HBI1 EXPRESSION TAG SEQRES 1 A 133 GLY ASN SER GLY ARG PHE GLU ARG ASP ALA PHE ASP THR SEQRES 2 A 133 LEU PHE ASP HIS ALA PRO ASP LYS LEU SER VAL VAL LYS SEQRES 3 A 133 LYS SER LEU ILE THR PHE VAL ASN LYS HIS LEU ASN LYS SEQRES 4 A 133 LEU ASN LEU GLU VAL THR GLU LEU GLU THR GLN PHE ALA SEQRES 5 A 133 ASP GLY VAL TYR LEU VAL LEU LEU MET GLY LEU LEU GLU SEQRES 6 A 133 ASP TYR PHE VAL PRO LEU HIS HIS PHE TYR LEU THR PRO SEQRES 7 A 133 GLU SER PHE ASP GLN LYS VAL HIS ASN VAL SER PHE ALA SEQRES 8 A 133 PHE GLU LEU MET LEU ASP GLY GLY LEU LYS LYS PRO LYS SEQRES 9 A 133 ALA ARG PRO GLU ASP VAL VAL ASN LEU ASP LEU LYS SER SEQRES 10 A 133 THR LEU ARG VAL LEU TYR ASN LEU PHE THR LYS TYR LYS SEQRES 11 A 133 ASN VAL GLU SEQRES 1 B 133 GLY ASN SER GLY ARG PHE GLU ARG ASP ALA PHE ASP THR SEQRES 2 B 133 LEU PHE ASP HIS ALA PRO ASP LYS LEU SER VAL VAL LYS SEQRES 3 B 133 LYS SER LEU ILE THR PHE VAL ASN LYS HIS LEU ASN LYS SEQRES 4 B 133 LEU ASN LEU GLU VAL THR GLU LEU GLU THR GLN PHE ALA SEQRES 5 B 133 ASP GLY VAL TYR LEU VAL LEU LEU MET GLY LEU LEU GLU SEQRES 6 B 133 ASP TYR PHE VAL PRO LEU HIS HIS PHE TYR LEU THR PRO SEQRES 7 B 133 GLU SER PHE ASP GLN LYS VAL HIS ASN VAL SER PHE ALA SEQRES 8 B 133 PHE GLU LEU MET LEU ASP GLY GLY LEU LYS LYS PRO LYS SEQRES 9 B 133 ALA ARG PRO GLU ASP VAL VAL ASN LEU ASP LEU LYS SER SEQRES 10 B 133 THR LEU ARG VAL LEU TYR ASN LEU PHE THR LYS TYR LYS SEQRES 11 B 133 ASN VAL GLU HET EDO A 401 4 HET EDO A 402 4 HET EDO A 403 4 HET EDO A 404 4 HET EDO B 401 4 HET EDO B 402 4 HET EDO B 403 4 HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 EDO 7(C2 H6 O2) FORMUL 10 HOH *116(H2 O) HELIX 1 1 PHE A 242 ASP A 247 5 6 HELIX 2 2 LEU A 253 ASN A 269 1 17 HELIX 3 3 LYS A 270 ASN A 272 5 3 HELIX 4 4 GLY A 285 GLU A 296 1 12 HELIX 5 5 PRO A 301 PHE A 305 5 5 HELIX 6 6 SER A 311 GLY A 329 1 19 HELIX 7 7 ARG A 337 ASN A 343 1 7 HELIX 8 8 ASP A 345 LYS A 361 1 17 HELIX 9 9 ASP B 240 ALA B 249 1 10 HELIX 10 10 ASP B 251 ASN B 269 1 19 HELIX 11 11 LYS B 270 ASN B 272 5 3 HELIX 12 12 GLY B 285 GLU B 296 1 12 HELIX 13 13 PRO B 301 PHE B 305 5 5 HELIX 14 14 SER B 311 GLY B 330 1 20 HELIX 15 15 ARG B 337 ASN B 343 1 7 HELIX 16 16 ASP B 345 LYS B 361 1 17 SITE 1 AC1 6 LEU A 290 GLY A 293 TYR A 298 PHE A 299 SITE 2 AC1 6 VAL A 300 HOH A 565 SITE 1 AC2 6 LYS A 258 PHE A 321 GLU A 324 LEU A 325 SITE 2 AC2 6 ASP A 328 HOH A 508 SITE 1 AC3 2 TYR A 306 HIS A 317 SITE 1 AC4 3 GLN A 281 ASP A 284 EDO B 402 SITE 1 AC5 3 GLN B 281 ASP B 284 TYR B 287 SITE 1 AC6 3 LEU A 307 EDO A 404 LEU B 307 SITE 1 AC7 2 THR B 262 HOH B 506 CRYST1 49.360 67.438 105.712 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020259 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014828 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009460 0.00000