HEADER FLUORESCENT PROTEIN 27-MAR-12 4EDS TITLE CRYSTAL STRUCTURE OF FAR-RED FLUORESCENT PROTEIN EQFP670 COMPND MOL_ID: 1; COMPND 2 MOLECULE: FAR-RED FLUORESCENT PROTEIN EQFP650; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTACMAEA QUADRICOLOR; SOURCE 3 ORGANISM_TAXID: 6118; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: JM109; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PQE30 KEYWDS BETA BARREL, FLUORESCENT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.PLETNEV,V.Z.PLETNEV,N.V.PLETNEVA REVDAT 2 27-MAR-13 4EDS 1 JRNL REVDAT 1 05-SEP-12 4EDS 0 JRNL AUTH S.PLETNEV,N.V.PLETNEVA,E.A.SOUSLOVA,D.M.CHUDAKOV,S.LUKYANOV, JRNL AUTH 2 A.WLODAWER,Z.DAUTER,V.PLETNEV JRNL TITL STRUCTURAL BASIS FOR BATHOCHROMIC SHIFT OF FLUORESCENCE IN JRNL TITL 2 FAR-RED FLUORESCENT PROTEINS EQFP650 AND EQFP670. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 68 1088 2012 JRNL REFN ISSN 0907-4449 JRNL PMID 22948909 JRNL DOI 10.1107/S0907444912020598 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.4_156) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.90 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 92226 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.197 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 4619 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.9030 - 4.9574 1.00 3247 164 0.1734 0.1690 REMARK 3 2 4.9574 - 3.9377 1.00 3048 159 0.1282 0.1279 REMARK 3 3 3.9377 - 3.4408 1.00 3023 156 0.1499 0.1938 REMARK 3 4 3.4408 - 3.1265 1.00 2957 160 0.1709 0.1837 REMARK 3 5 3.1265 - 2.9026 1.00 2950 168 0.1923 0.2188 REMARK 3 6 2.9026 - 2.7316 1.00 2950 163 0.1852 0.2168 REMARK 3 7 2.7316 - 2.5949 1.00 2929 170 0.1866 0.1986 REMARK 3 8 2.5949 - 2.4820 1.00 2896 175 0.1835 0.1970 REMARK 3 9 2.4820 - 2.3865 1.00 2923 150 0.1841 0.2158 REMARK 3 10 2.3865 - 2.3042 1.00 2949 143 0.1836 0.2019 REMARK 3 11 2.3042 - 2.2322 1.00 2905 148 0.1869 0.2055 REMARK 3 12 2.2322 - 2.1684 1.00 2912 171 0.1850 0.2220 REMARK 3 13 2.1684 - 2.1113 1.00 2904 145 0.1850 0.2030 REMARK 3 14 2.1113 - 2.0598 1.00 2914 143 0.1792 0.1918 REMARK 3 15 2.0598 - 2.0130 1.00 2880 151 0.1830 0.1967 REMARK 3 16 2.0130 - 1.9702 1.00 2903 162 0.1836 0.2272 REMARK 3 17 1.9702 - 1.9308 1.00 2911 142 0.1965 0.2005 REMARK 3 18 1.9308 - 1.8943 1.00 2859 167 0.1973 0.2040 REMARK 3 19 1.8943 - 1.8605 1.00 2915 147 0.1969 0.2315 REMARK 3 20 1.8605 - 1.8290 1.00 2891 146 0.1993 0.2287 REMARK 3 21 1.8290 - 1.7995 1.00 2876 145 0.1929 0.2517 REMARK 3 22 1.7995 - 1.7718 1.00 2892 148 0.2032 0.2127 REMARK 3 23 1.7718 - 1.7457 1.00 2874 143 0.1969 0.2011 REMARK 3 24 1.7457 - 1.7211 1.00 2904 145 0.1907 0.2385 REMARK 3 25 1.7211 - 1.6979 1.00 2888 148 0.1941 0.2152 REMARK 3 26 1.6979 - 1.6758 1.00 2851 154 0.2053 0.2507 REMARK 3 27 1.6758 - 1.6549 1.00 2910 137 0.2046 0.2691 REMARK 3 28 1.6549 - 1.6350 1.00 2838 170 0.2066 0.2179 REMARK 3 29 1.6350 - 1.6159 1.00 2887 136 0.2165 0.2280 REMARK 3 30 1.6159 - 1.6000 0.99 2821 163 0.2380 0.2828 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.39 REMARK 3 B_SOL : 50.73 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.450 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.41 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.03630 REMARK 3 B22 (A**2) : 1.03630 REMARK 3 B33 (A**2) : -2.07270 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 4088 REMARK 3 ANGLE : 1.578 5584 REMARK 3 CHIRALITY : 0.113 565 REMARK 3 PLANARITY : 0.007 756 REMARK 3 DIHEDRAL : 17.570 1547 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4EDS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-APR-12. REMARK 100 THE RCSB ID CODE IS RCSB071490. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 92328 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 20.500 REMARK 200 R MERGE (I) : 0.05900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 12.40 REMARK 200 R MERGE FOR SHELL (I) : 0.51500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.39 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.5 M NA ACETATE, 0.1 M BIS-TRIS REMARK 280 PROPANE, PH 7.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 71.64633 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 143.29267 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 107.46950 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 179.11583 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 35.82317 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 71.64633 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 143.29267 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 179.11583 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 107.46950 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 35.82317 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10420 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31730 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -34.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 -0.866025 0.000000 52.30250 REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 90.59059 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 179.11583 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -11 REMARK 465 ARG A -10 REMARK 465 GLY A -9 REMARK 465 SER A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 ASP A 1 REMARK 465 SER A 2 REMARK 465 LEU A 224 REMARK 465 PRO A 225 REMARK 465 SER A 226 REMARK 465 LYS A 227 REMARK 465 LEU A 228 REMARK 465 GLY A 229 REMARK 465 HIS A 230 REMARK 465 SER A 231 REMARK 465 MET B -11 REMARK 465 ARG B -10 REMARK 465 GLY B -9 REMARK 465 SER B -8 REMARK 465 HIS B -7 REMARK 465 HIS B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 ASP B 1 REMARK 465 SER B 2 REMARK 465 LEU B 224 REMARK 465 PRO B 225 REMARK 465 SER B 226 REMARK 465 LYS B 227 REMARK 465 LEU B 228 REMARK 465 GLY B 229 REMARK 465 HIS B 230 REMARK 465 SER B 231 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 69 58.14 -98.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 337 DISTANCE = 6.61 ANGSTROMS REMARK 525 HOH A 407 DISTANCE = 5.15 ANGSTROMS REMARK 525 HOH A 455 DISTANCE = 5.52 ANGSTROMS REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3PJ7 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF FAR-RED FLUORESCENT PROTEIN KATUSHKA REMARK 900 CRYSTALLIZED AT PH 8.5 REMARK 900 RELATED ID: 4EDO RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF FAR-RED FLUORESCENT PROTEIN EQFP650 REMARK 900 RELATED ID: 3IP2 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF RED FLUORESCENT PROTEIN NEPTUNE AT PH REMARK 900 7.0 REMARK 900 RELATED ID: 3BXB RELATED DB: PDB REMARK 900 MONOMERIC FAR-RED FLUORESCENT PROTEIN MKATE CRYSTALLIZED AT REMARK 900 PH 7.0 DBREF 4EDS A -11 231 PDB 4EDS 4EDS -11 231 DBREF 4EDS B -11 231 PDB 4EDS 4EDS -11 231 SEQRES 1 A 241 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER ASP SEQRES 2 A 241 SER GLU LEU ILE SER GLU ASN MET HIS THR LYS LEU TYR SEQRES 3 A 241 MET GLU GLY THR VAL ASN GLY HIS HIS PHE LYS CYS THR SEQRES 4 A 241 SER GLU GLY GLU GLY LYS PRO TYR GLU GLY THR GLN THR SEQRES 5 A 241 CYS LYS ILE LYS VAL VAL GLU GLY GLY PRO LEU PRO PHE SEQRES 6 A 241 ALA PHE ASP ILE LEU ALA THR SER PHE NRQ SER LYS THR SEQRES 7 A 241 PHE ILE ASN HIS THR GLN GLY ILE PRO ASP PHE PHE LYS SEQRES 8 A 241 GLN SER PHE PRO GLU GLY PHE THR TRP GLU ARG ILE THR SEQRES 9 A 241 THR TYR GLU ASP GLY GLY VAL LEU THR ALA THR GLN ASP SEQRES 10 A 241 THR SER LEU GLN ASN GLY CYS LEU ILE TYR ASN VAL LYS SEQRES 11 A 241 ILE ASN GLY VAL ASN PHE PRO SER ASN GLY PRO VAL MET SEQRES 12 A 241 GLN LYS LYS THR LEU GLY TRP GLU ALA ASN THR GLU MET SEQRES 13 A 241 LEU TYR PRO ALA ASP SER GLY LEU ARG GLY HIS ASN GLN SEQRES 14 A 241 MET ALA LEU LYS LEU VAL GLY GLY GLY TYR LEU HIS CYS SEQRES 15 A 241 SER LEU LYS THR THR TYR ARG SER LYS LYS PRO ALA LYS SEQRES 16 A 241 ASN LEU LYS MET PRO GLY PHE TYR PHE VAL ASP ARG LYS SEQRES 17 A 241 LEU GLU ARG ILE LYS GLU ALA ASP LYS GLU THR TYR VAL SEQRES 18 A 241 GLU GLN HIS GLU MET ALA VAL ALA ARG TYR CYS ASP LEU SEQRES 19 A 241 PRO SER LYS LEU GLY HIS SER SEQRES 1 B 241 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER ASP SEQRES 2 B 241 SER GLU LEU ILE SER GLU ASN MET HIS THR LYS LEU TYR SEQRES 3 B 241 MET GLU GLY THR VAL ASN GLY HIS HIS PHE LYS CYS THR SEQRES 4 B 241 SER GLU GLY GLU GLY LYS PRO TYR GLU GLY THR GLN THR SEQRES 5 B 241 CYS LYS ILE LYS VAL VAL GLU GLY GLY PRO LEU PRO PHE SEQRES 6 B 241 ALA PHE ASP ILE LEU ALA THR SER PHE NRQ SER LYS THR SEQRES 7 B 241 PHE ILE ASN HIS THR GLN GLY ILE PRO ASP PHE PHE LYS SEQRES 8 B 241 GLN SER PHE PRO GLU GLY PHE THR TRP GLU ARG ILE THR SEQRES 9 B 241 THR TYR GLU ASP GLY GLY VAL LEU THR ALA THR GLN ASP SEQRES 10 B 241 THR SER LEU GLN ASN GLY CYS LEU ILE TYR ASN VAL LYS SEQRES 11 B 241 ILE ASN GLY VAL ASN PHE PRO SER ASN GLY PRO VAL MET SEQRES 12 B 241 GLN LYS LYS THR LEU GLY TRP GLU ALA ASN THR GLU MET SEQRES 13 B 241 LEU TYR PRO ALA ASP SER GLY LEU ARG GLY HIS ASN GLN SEQRES 14 B 241 MET ALA LEU LYS LEU VAL GLY GLY GLY TYR LEU HIS CYS SEQRES 15 B 241 SER LEU LYS THR THR TYR ARG SER LYS LYS PRO ALA LYS SEQRES 16 B 241 ASN LEU LYS MET PRO GLY PHE TYR PHE VAL ASP ARG LYS SEQRES 17 B 241 LEU GLU ARG ILE LYS GLU ALA ASP LYS GLU THR TYR VAL SEQRES 18 B 241 GLU GLN HIS GLU MET ALA VAL ALA ARG TYR CYS ASP LEU SEQRES 19 B 241 PRO SER LYS LEU GLY HIS SER MODRES 4EDS NRQ A 63 MET MODRES 4EDS NRQ A 63 TYR MODRES 4EDS NRQ A 63 GLY MODRES 4EDS NRQ B 63 MET MODRES 4EDS NRQ B 63 TYR MODRES 4EDS NRQ B 63 GLY HET NRQ A 63 23 HET NRQ B 63 23 HETNAM NRQ {(4Z)-4-(4-HYDROXYBENZYLIDENE)-2-[3-(METHYLTHIO) HETNAM 2 NRQ PROPANIMIDOYL]-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1- HETNAM 3 NRQ YL}ACETIC ACID HETSYN NRQ CHROMOPHORE (MET-TYR-GLY) FORMUL 1 NRQ 2(C16 H17 N3 O4 S) FORMUL 3 HOH *360(H2 O) HELIX 1 1 ALA A 54 PHE A 62 5 9 HELIX 2 2 ASP A 78 SER A 83 1 6 HELIX 3 3 GLY A 130 LYS A 135 1 6 HELIX 4 4 PRO A 183 LEU A 187 5 5 HELIX 5 5 ALA B 54 PHE B 62 5 9 HELIX 6 6 ASP B 78 SER B 83 1 6 HELIX 7 7 PRO B 183 LEU B 187 5 5 SHEET 1 A11 ASN A 71 HIS A 72 0 SHEET 2 A11 TYR A 210 ARG A 220 1 O ALA A 219 N ASN A 71 SHEET 3 A11 THR A 38 GLU A 47 -1 N ILE A 43 O VAL A 211 SHEET 4 A11 HIS A 22 LYS A 33 -1 N GLU A 29 O LYS A 42 SHEET 5 A11 MET A 9 VAL A 19 -1 N MET A 15 O CYS A 26 SHEET 6 A11 CYS A 114 VAL A 124 1 O LEU A 115 N HIS A 10 SHEET 7 A11 VAL A 101 GLN A 111 -1 N SER A 109 O ILE A 116 SHEET 8 A11 PHE A 88 TYR A 96 -1 N PHE A 88 O THR A 108 SHEET 9 A11 TYR A 169 SER A 180 -1 O ARG A 179 N THR A 89 SHEET 10 A11 GLY A 153 LEU A 164 -1 N LEU A 162 O LEU A 170 SHEET 11 A11 THR A 137 TRP A 140 -1 N LEU A 138 O LYS A 163 SHEET 1 B 6 ASN A 71 HIS A 72 0 SHEET 2 B 6 TYR A 210 ARG A 220 1 O ALA A 219 N ASN A 71 SHEET 3 B 6 TYR A 193 ALA A 205 -1 N GLU A 200 O HIS A 214 SHEET 4 B 6 ASN A 143 ALA A 150 -1 N ASN A 143 O ARG A 197 SHEET 5 B 6 GLY A 153 LEU A 164 -1 O ARG A 155 N TYR A 148 SHEET 6 B 6 THR A 137 TRP A 140 -1 N LEU A 138 O LYS A 163 SHEET 1 C11 ASN B 71 HIS B 72 0 SHEET 2 C11 TYR B 210 ARG B 220 1 O ALA B 219 N ASN B 71 SHEET 3 C11 THR B 38 GLU B 47 -1 N ILE B 43 O VAL B 211 SHEET 4 C11 HIS B 22 LYS B 33 -1 N THR B 27 O LYS B 44 SHEET 5 C11 MET B 9 VAL B 19 -1 N MET B 15 O CYS B 26 SHEET 6 C11 CYS B 114 VAL B 124 1 O GLY B 123 N THR B 18 SHEET 7 C11 VAL B 101 GLN B 111 -1 N SER B 109 O ILE B 116 SHEET 8 C11 PHE B 88 TYR B 96 -1 N THR B 94 O LEU B 102 SHEET 9 C11 TYR B 169 SER B 180 -1 O ARG B 179 N THR B 89 SHEET 10 C11 GLY B 153 LEU B 164 -1 N LEU B 154 O TYR B 178 SHEET 11 C11 THR B 137 TRP B 140 -1 N GLY B 139 O LYS B 163 SHEET 1 D 6 ASN B 71 HIS B 72 0 SHEET 2 D 6 TYR B 210 ARG B 220 1 O ALA B 219 N ASN B 71 SHEET 3 D 6 TYR B 193 ALA B 205 -1 N ILE B 202 O GLU B 212 SHEET 4 D 6 ASN B 143 ALA B 150 -1 N LEU B 147 O TYR B 193 SHEET 5 D 6 GLY B 153 LEU B 164 -1 O ARG B 155 N TYR B 148 SHEET 6 D 6 THR B 137 TRP B 140 -1 N GLY B 139 O LYS B 163 LINK C PHE A 62 N1 NRQ A 63 1555 1555 1.33 LINK C3 NRQ A 63 N ASER A 66 1555 1555 1.31 LINK C3 NRQ A 63 N BSER A 66 1555 1555 1.33 LINK C PHE B 62 N1 NRQ B 63 1555 1555 1.36 LINK C3 NRQ B 63 N SER B 66 1555 1555 1.32 CISPEP 1 GLY A 49 PRO A 50 0 -5.61 CISPEP 2 PHE A 84 PRO A 85 0 9.14 CISPEP 3 GLY B 49 PRO B 50 0 -5.11 CISPEP 4 PHE B 84 PRO B 85 0 11.47 CRYST1 104.605 104.605 214.939 90.00 90.00 120.00 P 61 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009560 0.005519 0.000000 0.00000 SCALE2 0.000000 0.011039 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004652 0.00000