HEADER TRANSFERASE 28-MAR-12 4EE7 TITLE CRYSTAL STRUCTURE OF THE NOVEL PHENAZINE PRENYLTRANSFERASE EPZP IN TITLE 2 COMPLEX WITH S-THIOLODIPHOSPHATE (METHYLATED) COMPND MOL_ID: 1; COMPND 2 MOLECULE: PRENYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES CINNAMONENSIS; SOURCE 3 ORGANISM_TAXID: 1900; SOURCE 4 GENE: EPZP; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: ROSETTA 2 KEYWDS PT FOLD, DIHYDROPHENAZINE CARBOXYLATE PRENYLTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR G.ZOCHER,T.STEHLE REVDAT 2 15-NOV-17 4EE7 1 REMARK REVDAT 1 14-NOV-12 4EE7 0 JRNL AUTH G.ZOCHER,O.SALEH,J.B.HEIM,D.A.HERBST,L.HEIDE,T.STEHLE JRNL TITL STRUCTURE-BASED ENGINEERING INCREASED THE CATALYTIC TURNOVER JRNL TITL 2 RATE OF A NOVEL PHENAZINE PRENYLTRANSFERASE. JRNL REF PLOS ONE V. 7 48427 2012 JRNL REFN ESSN 1932-6203 JRNL PMID 23119011 JRNL DOI 10.1371/JOURNAL.PONE.0048427 REMARK 2 REMARK 2 RESOLUTION. 1.67 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.67 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.39 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 62847 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2619 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.67 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.71 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4527 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2410 REMARK 3 BIN FREE R VALUE SET COUNT : 189 REMARK 3 BIN FREE R VALUE : 0.2790 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4480 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 83 REMARK 3 SOLVENT ATOMS : 634 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.19 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.20000 REMARK 3 B22 (A**2) : 0.50000 REMARK 3 B33 (A**2) : -0.30000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.112 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.109 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.076 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.287 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.947 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4718 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3166 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6431 ; 1.418 ; 1.991 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7748 ; 0.872 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 597 ; 6.053 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 190 ;31.525 ;23.895 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 697 ;12.842 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;10.511 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 718 ; 0.091 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5187 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 945 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2911 ; 1.523 ; 4.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1175 ; 0.658 ; 4.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4718 ; 2.188 ; 4.500 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1807 ; 2.581 ; 5.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1702 ; 3.617 ; 5.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 292 REMARK 3 ORIGIN FOR THE GROUP (A): -2.4870 -17.5222 15.1308 REMARK 3 T TENSOR REMARK 3 T11: 0.0372 T22: 0.0141 REMARK 3 T33: 0.0137 T12: -0.0193 REMARK 3 T13: 0.0155 T23: -0.0099 REMARK 3 L TENSOR REMARK 3 L11: 1.5978 L22: 0.6022 REMARK 3 L33: 0.6146 L12: -0.1379 REMARK 3 L13: 0.5017 L23: -0.0468 REMARK 3 S TENSOR REMARK 3 S11: -0.0053 S12: -0.0201 S13: 0.1053 REMARK 3 S21: -0.0077 S22: -0.0100 S23: -0.0146 REMARK 3 S31: -0.0541 S32: -0.0144 S33: 0.0153 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 5 B 292 REMARK 3 ORIGIN FOR THE GROUP (A): 5.1736 -17.4420 52.9943 REMARK 3 T TENSOR REMARK 3 T11: 0.0172 T22: 0.0268 REMARK 3 T33: 0.0194 T12: 0.0028 REMARK 3 T13: -0.0071 T23: 0.0172 REMARK 3 L TENSOR REMARK 3 L11: 1.5497 L22: 0.7271 REMARK 3 L33: 0.7260 L12: -0.0558 REMARK 3 L13: 0.4522 L23: -0.1243 REMARK 3 S TENSOR REMARK 3 S11: -0.0838 S12: 0.0253 S13: 0.1240 REMARK 3 S21: 0.0321 S22: 0.0168 S23: -0.0001 REMARK 3 S31: -0.1036 S32: 0.0253 S33: 0.0670 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4EE7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-APR-12. REMARK 100 THE DEPOSITION ID IS D_1000071505. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-MAY-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06DA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00000 REMARK 200 MONOCHROMATOR : DCCM REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 65469 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.670 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.67 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.71 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: PHASER REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.52 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 200 MM (NH4)2SO4, 30% (W/V) REMARK 280 PEG2000MME, 100 MM SODIUM ACETATE 4.6, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 293K, PH 4.6 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 21.05500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 67.93000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 48.50500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 67.93000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.05500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 48.50500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ARG A 293 REMARK 465 VAL A 294 REMARK 465 GLU A 295 REMARK 465 LYS A 296 REMARK 465 LEU A 297 REMARK 465 LEU A 298 REMARK 465 ARG A 299 REMARK 465 SER A 300 REMARK 465 ASP A 301 REMARK 465 GLY A 302 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 GLU B 3 REMARK 465 SER B 4 REMARK 465 ARG B 293 REMARK 465 VAL B 294 REMARK 465 GLU B 295 REMARK 465 LYS B 296 REMARK 465 LEU B 297 REMARK 465 LEU B 298 REMARK 465 ARG B 299 REMARK 465 SER B 300 REMARK 465 ASP B 301 REMARK 465 GLY B 302 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 3 CG CD OE1 OE2 REMARK 470 LYS A 94 CD CE NZ REMARK 470 LYS A 292 CG CD CE NZ REMARK 470 GLU B 78 CG CD OE1 OE2 REMARK 470 LYS B 94 CD CE NZ REMARK 470 MLY B 283 CH1 REMARK 470 LYS B 292 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 614 O HOH B 534 2.08 REMARK 500 OD2 ASP A 39 O HOH A 788 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 515 O HOH B 755 1655 1.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 116 -36.19 -133.86 REMARK 500 THR A 264 59.58 -101.72 REMARK 500 GLU A 265 72.59 -34.40 REMARK 500 THR B 116 -38.82 -130.69 REMARK 500 PRO B 246 49.99 -84.56 REMARK 500 PRO B 261 38.59 -78.42 REMARK 500 GLU B 265 39.95 31.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 THR B 264 GLU B 265 139.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PG4 A 402 REMARK 610 PG4 B 401 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PIS A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 406 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4EE8 RELATED DB: PDB REMARK 900 RELATED ID: 4EE6 RELATED DB: PDB DBREF 4EE7 A 1 302 UNP E5KWG9 E5KWG9_STRCM 1 302 DBREF 4EE7 B 1 302 UNP E5KWG9 E5KWG9_STRCM 1 302 SEQADV 4EE7 GLY A -1 UNP E5KWG9 EXPRESSION TAG SEQADV 4EE7 SER A 0 UNP E5KWG9 EXPRESSION TAG SEQADV 4EE7 GLY B -1 UNP E5KWG9 EXPRESSION TAG SEQADV 4EE7 SER B 0 UNP E5KWG9 EXPRESSION TAG SEQRES 1 A 304 GLY SER MET SER GLU SER ALA ASP LEU THR GLU LEU TYR SEQRES 2 A 304 SER ILE ILE GLU MLY THR ALA GLN VAL VAL ASP VAL THR SEQRES 3 A 304 ALA SER HIS ASP LYS VAL TRP PRO ILE LEU ASN ALA PHE SEQRES 4 A 304 GLN ASP VAL ILE ALA ASP SER VAL ILE SER PHE ARG ALA SEQRES 5 A 304 SER THR GLY SER SER ALA ASP ASP LEU ASP CYS ARG PHE SEQRES 6 A 304 THR MET LEU PRO MLY GLY LEU ASP PRO TYR ALA ARG ALA SEQRES 7 A 304 LEU GLU HIS GLY LEU THR PRO MLY THR ASP HIS PRO VAL SEQRES 8 A 304 GLY SER LEU LEU LYS GLU VAL HIS GLU ASN LEU PRO ILE SEQRES 9 A 304 THR SER CYS GLY VAL ASP PHE GLY VAL ALA GLY GLY PHE SEQRES 10 A 304 THR LYS THR TRP SER PHE PRO SER ALA GLU MLY LEU GLY SEQRES 11 A 304 LYS VAL SER GLU LEU VAL LYS LEU PRO SER ILE PRO ASP SEQRES 12 A 304 ALA VAL ALA ALA ASN ARG ASP PHE PHE GLU LYS TRP GLY SEQRES 13 A 304 ILE ALA ASP MET VAL SER THR VAL GLY ILE ASP TYR SER SEQRES 14 A 304 LYS ARG THR MET ASN LEU TYR PHE GLY GLY GLY VAL GLY SEQRES 15 A 304 ASP ARG VAL PRO ALA GLY VAL PHE GLU GLU LYS GLY VAL SEQRES 16 A 304 ARG ALA ILE LEU GLY GLU LEU GLY LEU ALA ALA PRO SER SEQRES 17 A 304 GLU GLU LEU LEU LYS PHE CYS GLU ARG SER PHE VAL ILE SEQRES 18 A 304 TYR VAL THR LEU SER TRP ASP SER PRO LYS ILE ASN ARG SEQRES 19 A 304 PHE THR TYR SER VAL MET THR PRO GLU PRO LEU GLY LEU SEQRES 20 A 304 PRO VAL ASP LEU ALA PRO THR PHE GLU ARG LEU ILE LYS SEQRES 21 A 304 SER ALA PRO TYR ASP THR GLU GLY ARG ASN TYR VAL TYR SEQRES 22 A 304 GLY ILE ALA SER THR PRO LYS GLY GLU TYR HIS MLY ILE SEQRES 23 A 304 ALA SER TYR TYR GLN TRP GLN LYS ARG VAL GLU LYS LEU SEQRES 24 A 304 LEU ARG SER ASP GLY SEQRES 1 B 304 GLY SER MET SER GLU SER ALA ASP LEU THR GLU LEU TYR SEQRES 2 B 304 SER ILE ILE GLU MLY THR ALA GLN VAL VAL ASP VAL THR SEQRES 3 B 304 ALA SER HIS ASP LYS VAL TRP PRO ILE LEU ASN ALA PHE SEQRES 4 B 304 GLN ASP VAL ILE ALA ASP SER VAL ILE SER PHE ARG ALA SEQRES 5 B 304 SER THR GLY SER SER ALA ASP ASP LEU ASP CYS ARG PHE SEQRES 6 B 304 THR MET LEU PRO MLY GLY LEU ASP PRO TYR ALA ARG ALA SEQRES 7 B 304 LEU GLU HIS GLY LEU THR PRO MLY THR ASP HIS PRO VAL SEQRES 8 B 304 GLY SER LEU LEU LYS GLU VAL HIS GLU ASN LEU PRO ILE SEQRES 9 B 304 THR SER CYS GLY VAL ASP PHE GLY VAL ALA GLY GLY PHE SEQRES 10 B 304 THR LYS THR TRP SER PHE PRO SER ALA GLU MLY LEU GLY SEQRES 11 B 304 LYS VAL SER GLU LEU VAL LYS LEU PRO SER ILE PRO ASP SEQRES 12 B 304 ALA VAL ALA ALA ASN ARG ASP PHE PHE GLU LYS TRP GLY SEQRES 13 B 304 ILE ALA ASP MET VAL SER THR VAL GLY ILE ASP TYR SER SEQRES 14 B 304 LYS ARG THR MET ASN LEU TYR PHE GLY GLY GLY VAL GLY SEQRES 15 B 304 ASP ARG VAL PRO ALA GLY VAL PHE GLU GLU LYS GLY VAL SEQRES 16 B 304 ARG ALA ILE LEU GLY GLU LEU GLY LEU ALA ALA PRO SER SEQRES 17 B 304 GLU GLU LEU LEU LYS PHE CYS GLU ARG SER PHE VAL ILE SEQRES 18 B 304 TYR VAL THR LEU SER TRP ASP SER PRO LYS ILE ASN ARG SEQRES 19 B 304 PHE THR TYR SER VAL MET THR PRO GLU PRO LEU GLY LEU SEQRES 20 B 304 PRO VAL ASP LEU ALA PRO THR PHE GLU ARG LEU ILE LYS SEQRES 21 B 304 SER ALA PRO TYR ASP THR GLU GLY ARG ASN TYR VAL TYR SEQRES 22 B 304 GLY ILE ALA SER THR PRO LYS GLY GLU TYR HIS MLY ILE SEQRES 23 B 304 ALA SER TYR TYR GLN TRP GLN LYS ARG VAL GLU LYS LEU SEQRES 24 B 304 LEU ARG SER ASP GLY MODRES 4EE7 MLY A 16 LYS N-DIMETHYL-LYSINE MODRES 4EE7 MLY A 68 LYS N-DIMETHYL-LYSINE MODRES 4EE7 MLY A 84 LYS N-DIMETHYL-LYSINE MODRES 4EE7 MLY A 126 LYS N-DIMETHYL-LYSINE MODRES 4EE7 MLY A 283 LYS N-DIMETHYL-LYSINE MODRES 4EE7 MLY B 16 LYS N-DIMETHYL-LYSINE MODRES 4EE7 MLY B 68 LYS N-DIMETHYL-LYSINE MODRES 4EE7 MLY B 84 LYS N-DIMETHYL-LYSINE MODRES 4EE7 MLY B 126 LYS N-DIMETHYL-LYSINE MODRES 4EE7 MLY B 283 LYS N-DIMETHYL-LYSINE HET MLY A 16 11 HET MLY A 68 11 HET MLY A 84 11 HET MLY A 126 11 HET MLY A 283 11 HET MLY B 16 11 HET MLY B 68 11 HET MLY B 84 11 HET MLY B 126 11 HET MLY B 283 10 HET PIS A 401 9 HET PG4 A 402 7 HET PG4 A 403 13 HET SO4 A 404 5 HET SO4 A 405 5 HET CL A 406 1 HET PG4 B 401 10 HET PG4 B 402 13 HET SO4 B 403 5 HET SO4 B 404 5 HET SO4 B 405 5 HET SO4 B 406 5 HETNAM MLY N-DIMETHYL-LYSINE HETNAM PIS TRIHYDROGEN THIODIPHOSPHATE HETNAM PG4 TETRAETHYLENE GLYCOL HETNAM SO4 SULFATE ION HETNAM CL CHLORIDE ION HETSYN PIS THIOPYROPHOSPHATE FORMUL 1 MLY 10(C8 H18 N2 O2) FORMUL 3 PIS H3 O6 P2 S 1- FORMUL 4 PG4 4(C8 H18 O5) FORMUL 6 SO4 6(O4 S 2-) FORMUL 8 CL CL 1- FORMUL 15 HOH *634(H2 O) HELIX 1 1 SER A 4 VAL A 21 1 18 HELIX 2 2 SER A 26 PHE A 37 1 12 HELIX 3 3 PHE A 37 ALA A 42 1 6 HELIX 4 4 GLY A 53 ASP A 58 5 6 HELIX 5 5 ASP A 71 HIS A 79 1 9 HELIX 6 6 PRO A 88 LEU A 100 1 13 HELIX 7 7 LYS A 129 VAL A 134 1 6 HELIX 8 8 ASP A 141 ASN A 146 1 6 HELIX 9 9 ASN A 146 TRP A 153 1 8 HELIX 10 10 PRO A 184 PHE A 188 5 5 HELIX 11 11 GLU A 189 LEU A 200 1 12 HELIX 12 12 SER A 206 GLU A 214 1 9 HELIX 13 13 GLU A 241 LEU A 245 5 5 HELIX 14 14 ALA A 250 ALA A 260 1 11 HELIX 15 15 ASP B 6 VAL B 21 1 16 HELIX 16 16 SER B 26 PHE B 37 1 12 HELIX 17 17 PHE B 37 ALA B 42 1 6 HELIX 18 18 GLY B 53 ASP B 58 5 6 HELIX 19 19 ASP B 71 HIS B 79 1 9 HELIX 20 20 PRO B 88 LEU B 100 1 13 HELIX 21 21 LYS B 129 VAL B 134 1 6 HELIX 22 22 PRO B 140 ASN B 146 1 7 HELIX 23 23 ASN B 146 TRP B 153 1 8 HELIX 24 24 PRO B 184 PHE B 188 5 5 HELIX 25 25 GLU B 189 LEU B 200 1 12 HELIX 26 26 SER B 206 GLU B 214 1 9 HELIX 27 27 GLU B 241 LEU B 245 5 5 HELIX 28 28 ALA B 250 ALA B 260 1 11 SHEET 1 A11 VAL A 45 SER A 51 0 SHEET 2 A11 ASP A 60 PRO A 67 -1 O ARG A 62 N SER A 47 SHEET 3 A11 ILE A 102 GLY A 110 -1 O PHE A 109 N CYS A 61 SHEET 4 A11 GLY A 114 PRO A 122 -1 O PHE A 121 N THR A 103 SHEET 5 A11 VAL A 159 ASP A 165 -1 O ILE A 164 N THR A 118 SHEET 6 A11 THR A 170 PHE A 175 -1 O THR A 170 N ASP A 165 SHEET 7 A11 VAL A 218 SER A 224 -1 O LEU A 223 N MET A 171 SHEET 8 A11 ARG A 232 THR A 239 -1 O THR A 234 N TYR A 220 SHEET 9 A11 TYR A 269 SER A 275 -1 O TYR A 269 N THR A 239 SHEET 10 A11 GLU A 280 GLN A 289 -1 O TYR A 281 N ALA A 274 SHEET 11 A11 VAL A 45 SER A 51 -1 N PHE A 48 O SER A 286 SHEET 1 B11 VAL B 45 SER B 51 0 SHEET 2 B11 ASP B 60 PRO B 67 -1 O ARG B 62 N SER B 47 SHEET 3 B11 ILE B 102 GLY B 110 -1 O PHE B 109 N CYS B 61 SHEET 4 B11 GLY B 114 PRO B 122 -1 O PHE B 121 N THR B 103 SHEET 5 B11 VAL B 159 ASP B 165 -1 O ILE B 164 N THR B 118 SHEET 6 B11 THR B 170 PHE B 175 -1 O THR B 170 N ASP B 165 SHEET 7 B11 VAL B 218 SER B 224 -1 O LEU B 223 N MET B 171 SHEET 8 B11 ARG B 232 THR B 239 -1 O THR B 234 N TYR B 220 SHEET 9 B11 TYR B 269 SER B 275 -1 O TYR B 271 N VAL B 237 SHEET 10 B11 GLU B 280 GLN B 289 -1 O TYR B 281 N ALA B 274 SHEET 11 B11 VAL B 45 SER B 51 -1 N PHE B 48 O SER B 286 LINK C GLU A 15 N MLY A 16 1555 1555 1.33 LINK C MLY A 16 N THR A 17 1555 1555 1.33 LINK C PRO A 67 N MLY A 68 1555 1555 1.32 LINK C MLY A 68 N GLY A 69 1555 1555 1.33 LINK C PRO A 83 N MLY A 84 1555 1555 1.33 LINK C MLY A 84 N THR A 85 1555 1555 1.33 LINK C GLU A 125 N MLY A 126 1555 1555 1.33 LINK C MLY A 126 N LEU A 127 1555 1555 1.33 LINK C HIS A 282 N MLY A 283 1555 1555 1.32 LINK C MLY A 283 N ILE A 284 1555 1555 1.32 LINK C GLU B 15 N MLY B 16 1555 1555 1.32 LINK C MLY B 16 N THR B 17 1555 1555 1.33 LINK C PRO B 67 N MLY B 68 1555 1555 1.33 LINK C MLY B 68 N GLY B 69 1555 1555 1.34 LINK C PRO B 83 N MLY B 84 1555 1555 1.33 LINK C MLY B 84 N THR B 85 1555 1555 1.33 LINK C GLU B 125 N MLY B 126 1555 1555 1.33 LINK C MLY B 126 N LEU B 127 1555 1555 1.33 LINK C HIS B 282 N MLY B 283 1555 1555 1.32 LINK C MLY B 283 N ILE B 284 1555 1555 1.34 SITE 1 AC1 11 ARG A 49 LYS A 117 TRP A 119 ASN A 172 SITE 2 AC1 11 TYR A 174 TYR A 220 ARG A 232 MLY A 283 SITE 3 AC1 11 HOH A 578 HOH A 595 HOH A 601 SITE 1 AC2 5 THR A 64 TRP A 119 THR A 161 TYR A 174 SITE 2 AC2 5 PG4 A 403 SITE 1 AC3 8 THR A 64 GLY A 266 ARG A 267 ASN A 268 SITE 2 AC3 8 TYR A 287 TRP A 290 PG4 A 402 HOH A 743 SITE 1 AC4 9 THR A 85 ASP A 86 ARG A 169 THR A 276 SITE 2 AC4 9 LYS A 278 TYR A 281 HOH A 584 HOH A 650 SITE 3 AC4 9 HOH A 706 SITE 1 AC5 6 MLY A 68 GLY A 69 LEU A 70 ASP A 71 SITE 2 AC5 6 HIS A 97 HOH A 717 SITE 1 AC6 7 PRO A 184 ALA A 185 PRO B 184 ALA B 185 SITE 2 AC6 7 HOH B 505 HOH B 536 HOH B 620 SITE 1 AC7 6 ARG B 267 ASN B 268 TYR B 287 TRP B 290 SITE 2 AC7 6 PG4 B 402 HOH B 642 SITE 1 AC8 6 ARG B 62 THR B 64 THR B 161 TYR B 287 SITE 2 AC8 6 PG4 B 401 HOH B 750 SITE 1 AC9 7 MLY B 68 GLY B 69 LEU B 70 ASP B 71 SITE 2 AC9 7 HIS B 97 HOH B 533 HOH B 723 SITE 1 BC1 5 ARG B 75 HOH B 515 HOH B 532 HOH B 547 SITE 2 BC1 5 HOH B 755 SITE 1 BC2 8 THR B 85 ASP B 86 ARG B 169 THR B 276 SITE 2 BC2 8 LYS B 278 TYR B 281 HOH B 784 HOH B 803 SITE 1 BC3 4 SER B 131 ARG B 147 HOH B 605 HOH B 681 CRYST1 42.110 97.010 135.860 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023747 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010308 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007361 0.00000