HEADER IMMUNE SYSTEM 29-MAR-12 4EF4 TITLE CRYSTAL STRUCTURE OF STING CTD COMPLEX WITH C-DI-GMP COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSMEMBRANE PROTEIN 173; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: C-TERMINAL DOMAIN; COMPND 5 SYNONYM: ENDOPLASMIC RETICULUM INTERFERON STIMULATOR, ERIS, MEDIATOR COMPND 6 OF IRF3 ACTIVATION, HMITA, STIMULATOR OF INTERFERON GENES PROTEIN, COMPND 7 HSTING; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: STING/MITA/ERIS/MPYS/TMEM173; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG7 KEYWDS STING/MITA/ERIS/MPYS/TMEM173, INNATE IMMUNE SYSTEM, TYPE I KEYWDS 2 INTERFERON, DIMERIZATION, C-DI-GMP, 5 HELICES AND 5 STRANDS IN KEYWDS 3 SINGLE DOMAIN, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR S.OUYANG,H.RU,N.SHAW,Y.JIANG,F.NIU,Y.ZHU,W.QIU,Y.LI,Z.-J.LIU REVDAT 5 20-MAR-24 4EF4 1 REMARK SEQADV HETSYN LINK REVDAT 4 03-JUL-13 4EF4 1 JRNL REVDAT 3 30-MAY-12 4EF4 1 JRNL REVDAT 2 23-MAY-12 4EF4 1 JRNL REVDAT 1 16-MAY-12 4EF4 0 JRNL AUTH S.OUYANG,X.SONG,Y.WANG,H.RU,N.SHAW,Y.JIANG,F.NIU,Y.ZHU, JRNL AUTH 2 W.QIU,K.PARVATIYAR,Y.LI,R.ZHANG,G.CHENG,Z.J.LIU JRNL TITL STRUCTURAL ANALYSIS OF THE STING ADAPTOR PROTEIN REVEALS A JRNL TITL 2 HYDROPHOBIC DIMER INTERFACE AND MODE OF CYCLIC DI-GMP JRNL TITL 3 BINDING JRNL REF IMMUNITY V. 36 1073 2012 JRNL REFN ISSN 1074-7613 JRNL PMID 22579474 JRNL DOI 10.1016/J.IMMUNI.2012.03.019 REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.3_928) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.01 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 3 NUMBER OF REFLECTIONS : 26767 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.211 REMARK 3 R VALUE (WORKING SET) : 0.209 REMARK 3 FREE R VALUE : 0.257 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 1455 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.0127 - 4.6237 1.00 2905 164 0.1997 0.2525 REMARK 3 2 4.6237 - 3.6707 1.00 2832 150 0.1734 0.2057 REMARK 3 3 3.6707 - 3.2069 1.00 2863 152 0.2038 0.2427 REMARK 3 4 3.2069 - 2.9138 1.00 2848 131 0.2151 0.2706 REMARK 3 5 2.9138 - 2.7050 1.00 2852 155 0.2306 0.3100 REMARK 3 6 2.7050 - 2.5455 1.00 2841 140 0.2433 0.2965 REMARK 3 7 2.5455 - 2.4181 1.00 2820 150 0.2460 0.3336 REMARK 3 8 2.4181 - 2.3128 0.98 2765 149 0.2544 0.3061 REMARK 3 9 2.3128 - 2.2238 0.91 2546 159 0.2570 0.2972 REMARK 3 10 2.2238 - 2.1470 0.80 2298 105 0.2732 0.2879 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.86 REMARK 3 K_SOL : 0.37 REMARK 3 B_SOL : 47.40 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.260 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 31.340 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 40.63 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 56.73 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 7.71650 REMARK 3 B22 (A**2) : -15.82550 REMARK 3 B33 (A**2) : 8.10910 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -17.75470 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 3020 REMARK 3 ANGLE : 1.160 4108 REMARK 3 CHIRALITY : 0.079 451 REMARK 3 PLANARITY : 0.004 534 REMARK 3 DIHEDRAL : 16.826 1146 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4EF4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-APR-12. REMARK 100 THE DEPOSITION ID IS D_1000071538. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-FEB-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9794 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29026 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.147 REMARK 200 RESOLUTION RANGE LOW (A) : 41.005 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : 96.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: SHELXS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.99 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 14.4%(W/V) PEG8000, 0.08M CACODYLATE, REMARK 280 0.16M CALCIUM ACETATE, 20%(V/V) GLYCEROL, PH 6.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 36.42000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2900 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18060 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -30.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 115 REMARK 465 HIS A 116 REMARK 465 HIS A 117 REMARK 465 HIS A 118 REMARK 465 HIS A 119 REMARK 465 HIS A 120 REMARK 465 HIS A 121 REMARK 465 SER A 122 REMARK 465 SER A 123 REMARK 465 GLY A 124 REMARK 465 VAL A 125 REMARK 465 ASP A 126 REMARK 465 LEU A 127 REMARK 465 GLY A 128 REMARK 465 THR A 129 REMARK 465 GLU A 130 REMARK 465 ASN A 131 REMARK 465 LEU A 132 REMARK 465 TYR A 133 REMARK 465 PHE A 134 REMARK 465 GLN A 135 REMARK 465 SER A 136 REMARK 465 ASN A 137 REMARK 465 ALA A 138 REMARK 465 LEU A 139 REMARK 465 ALA A 140 REMARK 465 PRO A 141 REMARK 465 ALA A 142 REMARK 465 GLU A 143 REMARK 465 ILE A 144 REMARK 465 SER A 145 REMARK 465 ALA A 146 REMARK 465 VAL A 147 REMARK 465 CYS A 148 REMARK 465 GLU A 149 REMARK 465 LYS A 150 REMARK 465 GLY A 151 REMARK 465 THR A 229 REMARK 465 GLY A 230 REMARK 465 ASP A 231 REMARK 465 HIS A 232 REMARK 465 ALA A 233 REMARK 465 GLY A 234 REMARK 465 ILE A 235 REMARK 465 LYS A 236 REMARK 465 ASP A 237 REMARK 465 ALA A 318 REMARK 465 ASP A 319 REMARK 465 ASP A 320 REMARK 465 SER A 321 REMARK 465 SER A 322 REMARK 465 GLY A 344 REMARK 465 SER A 345 REMARK 465 LEU A 346 REMARK 465 LYS A 347 REMARK 465 THR A 348 REMARK 465 SER A 349 REMARK 465 ALA A 350 REMARK 465 VAL A 351 REMARK 465 PRO A 352 REMARK 465 SER A 353 REMARK 465 THR A 354 REMARK 465 SER A 355 REMARK 465 THR A 356 REMARK 465 MET A 357 REMARK 465 SER A 358 REMARK 465 GLN A 359 REMARK 465 GLU A 360 REMARK 465 PRO A 361 REMARK 465 GLU A 362 REMARK 465 LEU A 363 REMARK 465 LEU A 364 REMARK 465 ILE A 365 REMARK 465 SER A 366 REMARK 465 GLY A 367 REMARK 465 MET A 368 REMARK 465 GLU A 369 REMARK 465 LYS A 370 REMARK 465 PRO A 371 REMARK 465 LEU A 372 REMARK 465 PRO A 373 REMARK 465 LEU A 374 REMARK 465 ARG A 375 REMARK 465 THR A 376 REMARK 465 ASP A 377 REMARK 465 PHE A 378 REMARK 465 SER A 379 REMARK 465 MET B 115 REMARK 465 HIS B 116 REMARK 465 HIS B 117 REMARK 465 HIS B 118 REMARK 465 HIS B 119 REMARK 465 HIS B 120 REMARK 465 HIS B 121 REMARK 465 SER B 122 REMARK 465 SER B 123 REMARK 465 GLY B 124 REMARK 465 VAL B 125 REMARK 465 ASP B 126 REMARK 465 LEU B 127 REMARK 465 GLY B 128 REMARK 465 THR B 129 REMARK 465 GLU B 130 REMARK 465 ASN B 131 REMARK 465 LEU B 132 REMARK 465 TYR B 133 REMARK 465 PHE B 134 REMARK 465 GLN B 135 REMARK 465 SER B 136 REMARK 465 ASN B 137 REMARK 465 ALA B 138 REMARK 465 LEU B 139 REMARK 465 ALA B 140 REMARK 465 PRO B 141 REMARK 465 ALA B 142 REMARK 465 GLU B 143 REMARK 465 ILE B 144 REMARK 465 SER B 145 REMARK 465 ALA B 146 REMARK 465 VAL B 147 REMARK 465 CYS B 148 REMARK 465 GLU B 149 REMARK 465 LYS B 150 REMARK 465 GLY B 151 REMARK 465 THR B 229 REMARK 465 GLY B 230 REMARK 465 ASP B 231 REMARK 465 HIS B 232 REMARK 465 ALA B 233 REMARK 465 GLY B 234 REMARK 465 ILE B 235 REMARK 465 LYS B 236 REMARK 465 ASP B 237 REMARK 465 ARG B 238 REMARK 465 VAL B 239 REMARK 465 TYR B 240 REMARK 465 ASP B 319 REMARK 465 ASP B 320 REMARK 465 SER B 321 REMARK 465 GLY B 344 REMARK 465 SER B 345 REMARK 465 LEU B 346 REMARK 465 LYS B 347 REMARK 465 THR B 348 REMARK 465 SER B 349 REMARK 465 ALA B 350 REMARK 465 VAL B 351 REMARK 465 PRO B 352 REMARK 465 SER B 353 REMARK 465 THR B 354 REMARK 465 SER B 355 REMARK 465 THR B 356 REMARK 465 MET B 357 REMARK 465 SER B 358 REMARK 465 GLN B 359 REMARK 465 GLU B 360 REMARK 465 PRO B 361 REMARK 465 GLU B 362 REMARK 465 LEU B 363 REMARK 465 LEU B 364 REMARK 465 ILE B 365 REMARK 465 SER B 366 REMARK 465 GLY B 367 REMARK 465 MET B 368 REMARK 465 GLU B 369 REMARK 465 LYS B 370 REMARK 465 PRO B 371 REMARK 465 LEU B 372 REMARK 465 PRO B 373 REMARK 465 LEU B 374 REMARK 465 ARG B 375 REMARK 465 THR B 376 REMARK 465 ASP B 377 REMARK 465 PHE B 378 REMARK 465 SER B 379 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLU B 246 CA CB CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR A 199 OE1 GLU A 336 2.03 REMARK 500 OH TYR B 199 OE1 GLU B 336 2.04 REMARK 500 N SER B 324 O HOH B 524 2.05 REMARK 500 O GLN B 273 O HOH B 521 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 153 -76.06 -67.58 REMARK 500 ASN A 154 68.83 67.52 REMARK 500 TYR A 167 -64.71 -145.16 REMARK 500 ASP A 216 114.48 -176.02 REMARK 500 PHE B 153 93.29 68.15 REMARK 500 TYR B 167 -69.78 -145.03 REMARK 500 GLU B 174 -18.74 77.81 REMARK 500 ARG B 191 80.51 -58.99 REMARK 500 LEU B 202 79.66 -119.73 REMARK 500 ASP B 216 118.20 -167.24 REMARK 500 GLU B 304 73.53 -60.28 REMARK 500 SER B 305 173.82 -59.66 REMARK 500 ASN B 307 -7.20 -42.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 402 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 205 OD2 REMARK 620 2 GLU A 316 OE1 95.7 REMARK 620 3 GLU A 316 OE2 63.8 44.9 REMARK 620 4 HOH A 506 O 91.3 116.4 85.4 REMARK 620 5 HOH A 544 O 85.7 81.7 109.1 161.9 REMARK 620 6 HOH A 546 O 160.4 103.9 132.4 80.5 96.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 401 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 VAL B 341 O REMARK 620 2 HOH B 536 O 88.2 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE C2E A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4EF5 RELATED DB: PDB DBREF 4EF4 A 139 379 UNP Q86WV6 TM173_HUMAN 139 379 DBREF 4EF4 B 139 379 UNP Q86WV6 TM173_HUMAN 139 379 SEQADV 4EF4 MET A 115 UNP Q86WV6 EXPRESSION TAG SEQADV 4EF4 HIS A 116 UNP Q86WV6 EXPRESSION TAG SEQADV 4EF4 HIS A 117 UNP Q86WV6 EXPRESSION TAG SEQADV 4EF4 HIS A 118 UNP Q86WV6 EXPRESSION TAG SEQADV 4EF4 HIS A 119 UNP Q86WV6 EXPRESSION TAG SEQADV 4EF4 HIS A 120 UNP Q86WV6 EXPRESSION TAG SEQADV 4EF4 HIS A 121 UNP Q86WV6 EXPRESSION TAG SEQADV 4EF4 SER A 122 UNP Q86WV6 EXPRESSION TAG SEQADV 4EF4 SER A 123 UNP Q86WV6 EXPRESSION TAG SEQADV 4EF4 GLY A 124 UNP Q86WV6 EXPRESSION TAG SEQADV 4EF4 VAL A 125 UNP Q86WV6 EXPRESSION TAG SEQADV 4EF4 ASP A 126 UNP Q86WV6 EXPRESSION TAG SEQADV 4EF4 LEU A 127 UNP Q86WV6 EXPRESSION TAG SEQADV 4EF4 GLY A 128 UNP Q86WV6 EXPRESSION TAG SEQADV 4EF4 THR A 129 UNP Q86WV6 EXPRESSION TAG SEQADV 4EF4 GLU A 130 UNP Q86WV6 EXPRESSION TAG SEQADV 4EF4 ASN A 131 UNP Q86WV6 EXPRESSION TAG SEQADV 4EF4 LEU A 132 UNP Q86WV6 EXPRESSION TAG SEQADV 4EF4 TYR A 133 UNP Q86WV6 EXPRESSION TAG SEQADV 4EF4 PHE A 134 UNP Q86WV6 EXPRESSION TAG SEQADV 4EF4 GLN A 135 UNP Q86WV6 EXPRESSION TAG SEQADV 4EF4 SER A 136 UNP Q86WV6 EXPRESSION TAG SEQADV 4EF4 ASN A 137 UNP Q86WV6 EXPRESSION TAG SEQADV 4EF4 ALA A 138 UNP Q86WV6 EXPRESSION TAG SEQADV 4EF4 MET B 115 UNP Q86WV6 EXPRESSION TAG SEQADV 4EF4 HIS B 116 UNP Q86WV6 EXPRESSION TAG SEQADV 4EF4 HIS B 117 UNP Q86WV6 EXPRESSION TAG SEQADV 4EF4 HIS B 118 UNP Q86WV6 EXPRESSION TAG SEQADV 4EF4 HIS B 119 UNP Q86WV6 EXPRESSION TAG SEQADV 4EF4 HIS B 120 UNP Q86WV6 EXPRESSION TAG SEQADV 4EF4 HIS B 121 UNP Q86WV6 EXPRESSION TAG SEQADV 4EF4 SER B 122 UNP Q86WV6 EXPRESSION TAG SEQADV 4EF4 SER B 123 UNP Q86WV6 EXPRESSION TAG SEQADV 4EF4 GLY B 124 UNP Q86WV6 EXPRESSION TAG SEQADV 4EF4 VAL B 125 UNP Q86WV6 EXPRESSION TAG SEQADV 4EF4 ASP B 126 UNP Q86WV6 EXPRESSION TAG SEQADV 4EF4 LEU B 127 UNP Q86WV6 EXPRESSION TAG SEQADV 4EF4 GLY B 128 UNP Q86WV6 EXPRESSION TAG SEQADV 4EF4 THR B 129 UNP Q86WV6 EXPRESSION TAG SEQADV 4EF4 GLU B 130 UNP Q86WV6 EXPRESSION TAG SEQADV 4EF4 ASN B 131 UNP Q86WV6 EXPRESSION TAG SEQADV 4EF4 LEU B 132 UNP Q86WV6 EXPRESSION TAG SEQADV 4EF4 TYR B 133 UNP Q86WV6 EXPRESSION TAG SEQADV 4EF4 PHE B 134 UNP Q86WV6 EXPRESSION TAG SEQADV 4EF4 GLN B 135 UNP Q86WV6 EXPRESSION TAG SEQADV 4EF4 SER B 136 UNP Q86WV6 EXPRESSION TAG SEQADV 4EF4 ASN B 137 UNP Q86WV6 EXPRESSION TAG SEQADV 4EF4 ALA B 138 UNP Q86WV6 EXPRESSION TAG SEQRES 1 A 265 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 265 GLY THR GLU ASN LEU TYR PHE GLN SER ASN ALA LEU ALA SEQRES 3 A 265 PRO ALA GLU ILE SER ALA VAL CYS GLU LYS GLY ASN PHE SEQRES 4 A 265 ASN VAL ALA HIS GLY LEU ALA TRP SER TYR TYR ILE GLY SEQRES 5 A 265 TYR LEU ARG LEU ILE LEU PRO GLU LEU GLN ALA ARG ILE SEQRES 6 A 265 ARG THR TYR ASN GLN HIS TYR ASN ASN LEU LEU ARG GLY SEQRES 7 A 265 ALA VAL SER GLN ARG LEU TYR ILE LEU LEU PRO LEU ASP SEQRES 8 A 265 CYS GLY VAL PRO ASP ASN LEU SER MET ALA ASP PRO ASN SEQRES 9 A 265 ILE ARG PHE LEU ASP LYS LEU PRO GLN GLN THR GLY ASP SEQRES 10 A 265 HIS ALA GLY ILE LYS ASP ARG VAL TYR SER ASN SER ILE SEQRES 11 A 265 TYR GLU LEU LEU GLU ASN GLY GLN ARG ALA GLY THR CYS SEQRES 12 A 265 VAL LEU GLU TYR ALA THR PRO LEU GLN THR LEU PHE ALA SEQRES 13 A 265 MET SER GLN TYR SER GLN ALA GLY PHE SER ARG GLU ASP SEQRES 14 A 265 ARG LEU GLU GLN ALA LYS LEU PHE CYS ARG THR LEU GLU SEQRES 15 A 265 ASP ILE LEU ALA ASP ALA PRO GLU SER GLN ASN ASN CYS SEQRES 16 A 265 ARG LEU ILE ALA TYR GLN GLU PRO ALA ASP ASP SER SER SEQRES 17 A 265 PHE SER LEU SER GLN GLU VAL LEU ARG HIS LEU ARG GLN SEQRES 18 A 265 GLU GLU LYS GLU GLU VAL THR VAL GLY SER LEU LYS THR SEQRES 19 A 265 SER ALA VAL PRO SER THR SER THR MET SER GLN GLU PRO SEQRES 20 A 265 GLU LEU LEU ILE SER GLY MET GLU LYS PRO LEU PRO LEU SEQRES 21 A 265 ARG THR ASP PHE SER SEQRES 1 B 265 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 B 265 GLY THR GLU ASN LEU TYR PHE GLN SER ASN ALA LEU ALA SEQRES 3 B 265 PRO ALA GLU ILE SER ALA VAL CYS GLU LYS GLY ASN PHE SEQRES 4 B 265 ASN VAL ALA HIS GLY LEU ALA TRP SER TYR TYR ILE GLY SEQRES 5 B 265 TYR LEU ARG LEU ILE LEU PRO GLU LEU GLN ALA ARG ILE SEQRES 6 B 265 ARG THR TYR ASN GLN HIS TYR ASN ASN LEU LEU ARG GLY SEQRES 7 B 265 ALA VAL SER GLN ARG LEU TYR ILE LEU LEU PRO LEU ASP SEQRES 8 B 265 CYS GLY VAL PRO ASP ASN LEU SER MET ALA ASP PRO ASN SEQRES 9 B 265 ILE ARG PHE LEU ASP LYS LEU PRO GLN GLN THR GLY ASP SEQRES 10 B 265 HIS ALA GLY ILE LYS ASP ARG VAL TYR SER ASN SER ILE SEQRES 11 B 265 TYR GLU LEU LEU GLU ASN GLY GLN ARG ALA GLY THR CYS SEQRES 12 B 265 VAL LEU GLU TYR ALA THR PRO LEU GLN THR LEU PHE ALA SEQRES 13 B 265 MET SER GLN TYR SER GLN ALA GLY PHE SER ARG GLU ASP SEQRES 14 B 265 ARG LEU GLU GLN ALA LYS LEU PHE CYS ARG THR LEU GLU SEQRES 15 B 265 ASP ILE LEU ALA ASP ALA PRO GLU SER GLN ASN ASN CYS SEQRES 16 B 265 ARG LEU ILE ALA TYR GLN GLU PRO ALA ASP ASP SER SER SEQRES 17 B 265 PHE SER LEU SER GLN GLU VAL LEU ARG HIS LEU ARG GLN SEQRES 18 B 265 GLU GLU LYS GLU GLU VAL THR VAL GLY SER LEU LYS THR SEQRES 19 B 265 SER ALA VAL PRO SER THR SER THR MET SER GLN GLU PRO SEQRES 20 B 265 GLU LEU LEU ILE SER GLY MET GLU LYS PRO LEU PRO LEU SEQRES 21 B 265 ARG THR ASP PHE SER HET C2E A 401 46 HET CA A 402 1 HET CA B 401 1 HETNAM C2E 9,9'-[(2R,3R,3AS,5S,7AR,9R,10R,10AS,12S,14AR)-3,5,10, HETNAM 2 C2E 12-TETRAHYDROXY-5,12-DIOXIDOOCTAHYDRO-2H,7H-DIFURO[3, HETNAM 3 C2E 2-D:3',2'-J][1,3,7,9,2, HETNAM 4 C2E 8]TETRAOXADIPHOSPHACYCLODODECINE-2,9-DIYL]BIS(2-AMINO- HETNAM 5 C2E 1,9-DIHYDRO-6H-PURIN-6-ONE) HETNAM CA CALCIUM ION HETSYN C2E C-DI-GMP; CYCLIC DIGUANOSINE MONOPHOSPHATE FORMUL 3 C2E C20 H24 N10 O14 P2 FORMUL 4 CA 2(CA 2+) FORMUL 6 HOH *99(H2 O) HELIX 1 1 VAL A 155 TYR A 167 1 13 HELIX 2 2 TYR A 167 ARG A 191 1 25 HELIX 3 3 ASN A 211 ASP A 216 5 6 HELIX 4 4 THR A 263 GLN A 273 1 11 HELIX 5 5 TYR A 274 GLY A 278 5 5 HELIX 6 6 SER A 280 ALA A 302 1 23 HELIX 7 7 SER A 324 VAL A 343 1 20 HELIX 8 8 ASN B 154 GLY B 166 1 13 HELIX 9 9 TYR B 167 LEU B 172 1 6 HELIX 10 10 GLU B 174 ASN B 187 1 14 HELIX 11 11 ASN B 211 ASP B 216 1 6 HELIX 12 12 THR B 263 GLN B 273 1 11 HELIX 13 13 TYR B 274 GLY B 278 5 5 HELIX 14 14 SER B 280 ASP B 301 1 22 HELIX 15 15 SER B 305 ASN B 307 5 3 HELIX 16 16 SER B 324 VAL B 343 1 20 SHEET 1 A 5 ILE A 219 LYS A 224 0 SHEET 2 A 5 SER A 243 GLU A 249 -1 O GLU A 246 N ARG A 220 SHEET 3 A 5 GLN A 252 TYR A 261 -1 O ALA A 254 N LEU A 247 SHEET 4 A 5 LEU A 198 PRO A 203 1 N LEU A 201 O GLU A 260 SHEET 5 A 5 CYS A 309 TYR A 314 1 O ARG A 310 N LEU A 198 SHEET 1 B 5 ILE B 219 LYS B 224 0 SHEET 2 B 5 SER B 243 GLU B 249 -1 O ILE B 244 N ASP B 223 SHEET 3 B 5 GLN B 252 TYR B 261 -1 O ALA B 254 N LEU B 247 SHEET 4 B 5 LEU B 198 PRO B 203 1 N TYR B 199 O VAL B 258 SHEET 5 B 5 CYS B 309 TYR B 314 1 O ARG B 310 N LEU B 198 LINK OD2 ASP A 205 CA CA A 402 1555 1555 2.85 LINK OE1 GLU A 316 CA CA A 402 1555 1555 2.85 LINK OE2 GLU A 316 CA CA A 402 1555 1555 2.95 LINK CA CA A 402 O HOH A 506 1555 1555 2.65 LINK CA CA A 402 O HOH A 544 1555 1555 2.75 LINK CA CA A 402 O HOH A 546 1555 1555 2.96 LINK O VAL B 341 CA CA B 401 1555 1555 2.65 LINK CA CA B 401 O HOH B 536 1555 1555 2.91 CISPEP 1 GLN A 306 ASN A 307 0 10.69 SITE 1 AC1 15 SER A 162 TYR A 167 GLU A 260 THR A 263 SITE 2 AC1 15 PRO A 264 HOH A 501 HOH A 502 HOH A 503 SITE 3 AC1 15 HOH A 520 HOH A 550 SER B 162 GLY B 166 SITE 4 AC1 15 TYR B 167 THR B 263 PRO B 264 SITE 1 AC2 5 ASP A 205 GLU A 316 HOH A 506 HOH A 544 SITE 2 AC2 5 HOH A 546 SITE 1 AC3 2 VAL B 341 HOH B 536 CRYST1 61.375 72.840 62.440 90.00 97.03 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016293 0.000000 0.002009 0.00000 SCALE2 0.000000 0.013729 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016137 0.00000