HEADER TRANSFERASE 29-MAR-12 4EFF TITLE CRYSTAL STRUCTURE OF AROMATIC-AMINO-ACID AMINOTRANSFERASE FROM TITLE 2 BURKHOLDERIA PSEUDOMALLEI COMPND MOL_ID: 1; COMPND 2 MOLECULE: AROMATIC-AMINO-ACID AMINOTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 EC: 2.6.1.57; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BURKHOLDERIA PSEUDOMALLEI; SOURCE 3 ORGANISM_TAXID: 28450; SOURCE 4 GENE: BPSS0355, TYRB; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: AVA0421 KEYWDS SSGCID, SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE, KEYWDS 2 STRUCTURAL GENOMICS, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 3 13-SEP-23 4EFF 1 REMARK SEQADV REVDAT 2 15-NOV-17 4EFF 1 REMARK REVDAT 1 11-APR-12 4EFF 0 JRNL AUTH SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE JRNL AUTH 2 (SSGCID),J.ABENDROTH,A.WALL,T.CRAIG,B.STAKER,P.MYLER, JRNL AUTH 3 L.STEWART JRNL TITL CRYSTAL STRUCTURE OF AROMATIC-AMINO-ACID AMINOTRANSFERASE JRNL TITL 2 FROM BURKHOLDERIA PSEUDOMALLEI JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 34713 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1746 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.90 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2202 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.96 REMARK 3 BIN R VALUE (WORKING SET) : 0.2300 REMARK 3 BIN FREE R VALUE SET COUNT : 124 REMARK 3 BIN FREE R VALUE : 0.2840 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2789 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 6 REMARK 3 SOLVENT ATOMS : 285 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.96 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.51 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.13000 REMARK 3 B22 (A**2) : 0.13000 REMARK 3 B33 (A**2) : -0.19000 REMARK 3 B12 (A**2) : 0.06000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.136 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.125 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.086 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.526 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.943 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.928 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2879 ; 0.013 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1832 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3942 ; 1.526 ; 1.957 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4468 ; 0.962 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 396 ; 5.423 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 115 ;32.034 ;23.391 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 410 ;12.701 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;15.420 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 471 ; 0.087 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3337 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 608 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 16 A 398 REMARK 3 ORIGIN FOR THE GROUP (A): -20.9300 -6.1580 13.7750 REMARK 3 T TENSOR REMARK 3 T11: 0.0818 T22: 0.0590 REMARK 3 T33: 0.0520 T12: 0.0569 REMARK 3 T13: 0.0241 T23: 0.0195 REMARK 3 L TENSOR REMARK 3 L11: 0.5241 L22: 0.6286 REMARK 3 L33: 0.9516 L12: 0.0533 REMARK 3 L13: -0.2046 L23: -0.0193 REMARK 3 S TENSOR REMARK 3 S11: 0.1309 S12: 0.0870 S13: 0.0698 REMARK 3 S21: 0.0838 S22: -0.0377 S23: 0.0375 REMARK 3 S31: -0.1047 S32: -0.1091 S33: -0.0932 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 3 U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 4EFF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-APR-12. REMARK 100 THE DEPOSITION ID IS D_1000071549. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-MAR-12 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97860 REMARK 200 MONOCHROMATOR : DIAMOND(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34726 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : 0.07800 REMARK 200 R SYM (I) : 0.07800 REMARK 200 FOR THE DATA SET : 20.4900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.20 REMARK 200 R MERGE FOR SHELL (I) : 0.52400 REMARK 200 R SYM FOR SHELL (I) : 0.52400 REMARK 200 FOR SHELL : 3.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 3FSL, CHAIN A REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.95 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: EMERALD BIO JCSG+ SCREEN: 14.4% REMARK 280 PEG8000, 160 MM CALCIUM ACETATE, 20% GLYCEROL, BUPSE.01471.A.A1 REMARK 280 PW 34948 AT 36.1 MG/ML, PH 7.50, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.28667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 104.57333 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 104.57333 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 52.28667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -20 REMARK 465 ALA A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 MET A -12 REMARK 465 GLY A -11 REMARK 465 THR A -10 REMARK 465 LEU A -9 REMARK 465 GLU A -8 REMARK 465 ALA A -7 REMARK 465 GLN A -6 REMARK 465 THR A -5 REMARK 465 GLN A -4 REMARK 465 GLY A -3 REMARK 465 PRO A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 LEU A 3 REMARK 465 PHE A 4 REMARK 465 SER A 5 REMARK 465 ALA A 6 REMARK 465 VAL A 7 REMARK 465 GLU A 8 REMARK 465 LEU A 9 REMARK 465 ALA A 10 REMARK 465 PRO A 11 REMARK 465 ARG A 12 REMARK 465 ASP A 13 REMARK 465 PRO A 14 REMARK 465 ILE A 15 REMARK 465 LYS A 399 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 16 CG CD1 CD2 REMARK 470 GLU A 20 CG CD OE1 OE2 REMARK 470 LYS A 44 CG CD CE NZ REMARK 470 LYS A 56 CG CD CE NZ REMARK 470 ASP A 71 CG OD1 OD2 REMARK 470 ASP A 88 CG OD1 OD2 REMARK 470 ARG A 117 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 122 CG CD CE NZ REMARK 470 LYS A 124 CG CD CE NZ REMARK 470 GLU A 133 CG CD OE1 OE2 REMARK 470 LYS A 155 CG CD CE NZ REMARK 470 GLU A 201 CG CD OE1 OE2 REMARK 470 ARG A 207 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 221 CG CD OE1 OE2 REMARK 470 LYS A 267 CG CD CE NZ REMARK 470 ASP A 268 CG OD1 OD2 REMARK 470 GLN A 276 CG CD OE1 NE2 REMARK 470 LYS A 278 CG CD CE NZ REMARK 470 ARG A 279 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 282 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 321 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 332 CG CD CE NZ REMARK 470 ARG A 362 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 365 CG CD OE1 OE2 REMARK 470 GLU A 366 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 530 O HOH A 754 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 594 O HOH A 594 4555 2.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 306 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG A 317 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 120 86.46 -161.12 REMARK 500 TYR A 151 -77.22 -149.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: SSGCID-BUPSE.01471.A RELATED DB: TARGETTRACK DBREF 4EFF A 1 399 UNP Q63NE4 Q63NE4_BURPS 1 399 SEQADV 4EFF MET A -20 UNP Q63NE4 EXPRESSION TAG SEQADV 4EFF ALA A -19 UNP Q63NE4 EXPRESSION TAG SEQADV 4EFF HIS A -18 UNP Q63NE4 EXPRESSION TAG SEQADV 4EFF HIS A -17 UNP Q63NE4 EXPRESSION TAG SEQADV 4EFF HIS A -16 UNP Q63NE4 EXPRESSION TAG SEQADV 4EFF HIS A -15 UNP Q63NE4 EXPRESSION TAG SEQADV 4EFF HIS A -14 UNP Q63NE4 EXPRESSION TAG SEQADV 4EFF HIS A -13 UNP Q63NE4 EXPRESSION TAG SEQADV 4EFF MET A -12 UNP Q63NE4 EXPRESSION TAG SEQADV 4EFF GLY A -11 UNP Q63NE4 EXPRESSION TAG SEQADV 4EFF THR A -10 UNP Q63NE4 EXPRESSION TAG SEQADV 4EFF LEU A -9 UNP Q63NE4 EXPRESSION TAG SEQADV 4EFF GLU A -8 UNP Q63NE4 EXPRESSION TAG SEQADV 4EFF ALA A -7 UNP Q63NE4 EXPRESSION TAG SEQADV 4EFF GLN A -6 UNP Q63NE4 EXPRESSION TAG SEQADV 4EFF THR A -5 UNP Q63NE4 EXPRESSION TAG SEQADV 4EFF GLN A -4 UNP Q63NE4 EXPRESSION TAG SEQADV 4EFF GLY A -3 UNP Q63NE4 EXPRESSION TAG SEQADV 4EFF PRO A -2 UNP Q63NE4 EXPRESSION TAG SEQADV 4EFF GLY A -1 UNP Q63NE4 EXPRESSION TAG SEQADV 4EFF SER A 0 UNP Q63NE4 EXPRESSION TAG SEQRES 1 A 420 MET ALA HIS HIS HIS HIS HIS HIS MET GLY THR LEU GLU SEQRES 2 A 420 ALA GLN THR GLN GLY PRO GLY SER MET SER LEU PHE SER SEQRES 3 A 420 ALA VAL GLU LEU ALA PRO ARG ASP PRO ILE LEU GLY LEU SEQRES 4 A 420 ASN GLU ALA PHE ASN ALA ASP THR ARG PRO THR LYS VAL SEQRES 5 A 420 ASN LEU GLY VAL GLY VAL TYR THR ASN GLU ASP GLY LYS SEQRES 6 A 420 ILE PRO LEU LEU ARG ALA VAL ARG ASP ALA GLU LYS ALA SEQRES 7 A 420 ARG VAL GLU ALA GLY LEU PRO ARG GLY TYR LEU PRO ILE SEQRES 8 A 420 ASP GLY ILE ALA ALA TYR ASP ALA SER VAL GLN LYS LEU SEQRES 9 A 420 LEU LEU GLY ASP ASP SER PRO LEU ILE ALA ALA GLY ARG SEQRES 10 A 420 VAL VAL THR ALA GLN ALA LEU GLY GLY THR GLY ALA LEU SEQRES 11 A 420 LYS ILE GLY ALA ASP PHE LEU ARG THR LEU ASN PRO LYS SEQRES 12 A 420 ALA LYS VAL ALA ILE SER ASP PRO SER TRP GLU ASN HIS SEQRES 13 A 420 ARG ALA LEU PHE ASP MET ALA GLY PHE GLU VAL VAL ALA SEQRES 14 A 420 TYR PRO TYR TYR ASP ALA LYS THR ASN GLY VAL ASN PHE SEQRES 15 A 420 ASP GLY MET LEU ALA ALA LEU ASN GLY TYR GLU PRO GLY SEQRES 16 A 420 THR ILE VAL VAL LEU HIS ALA CYS CYS HIS ASN PRO THR SEQRES 17 A 420 GLY VAL ASP LEU ASN ASP ALA GLN TRP ALA GLN VAL VAL SEQRES 18 A 420 GLU VAL VAL LYS ALA ARG ARG LEU VAL PRO PHE LEU ASP SEQRES 19 A 420 ILE ALA TYR GLN GLY PHE GLY GLU SER ILE GLU ALA ASP SEQRES 20 A 420 ALA ALA ALA VAL ARG LEU PHE ALA ALA ALA ASN LEU ASN SEQRES 21 A 420 VAL PHE VAL SER SER SER PHE SER LYS SER PHE SER LEU SEQRES 22 A 420 TYR GLY GLU ARG VAL GLY ALA LEU SER ILE ILE THR ASP SEQRES 23 A 420 SER LYS ASP GLU ALA ALA ARG VAL LEU SER GLN LEU LYS SEQRES 24 A 420 ARG VAL ILE ARG THR ASN TYR SER ASN PRO PRO THR HIS SEQRES 25 A 420 GLY GLY ALA ILE VAL ALA ALA VAL LEU ALA SER PRO GLU SEQRES 26 A 420 LEU ARG ALA SER TRP VAL GLN GLU LEU GLY GLU MET ARG SEQRES 27 A 420 ASP ARG ILE ARG ALA MET ARG ASN GLY LEU VAL GLU ARG SEQRES 28 A 420 LEU LYS ALA ALA GLY ILE GLU ARG ASP PHE SER PHE ILE SEQRES 29 A 420 ASN ALA GLN ARG GLY MET PHE SER TYR SER GLY LEU THR SEQRES 30 A 420 SER ALA GLN VAL ASP ARG LEU ARG GLU GLU PHE GLY ILE SEQRES 31 A 420 TYR ALA VAL SER THR GLY ARG ILE CYS VAL ALA ALA LEU SEQRES 32 A 420 ASN THR ARG ASN LEU ASP VAL VAL ALA ASN ALA ILE ALA SEQRES 33 A 420 ALA VAL LEU LYS HET GOL A 401 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 GOL C3 H8 O3 FORMUL 3 HOH *285(H2 O) HELIX 1 1 LEU A 16 ASP A 25 1 10 HELIX 2 2 LEU A 48 GLY A 62 1 15 HELIX 3 3 ASP A 71 GLY A 86 1 16 HELIX 4 4 SER A 89 ALA A 94 1 6 HELIX 5 5 GLY A 107 ASN A 120 1 14 HELIX 6 6 TRP A 132 ALA A 142 1 11 HELIX 7 7 ASN A 160 TYR A 171 1 12 HELIX 8 8 ASN A 192 ARG A 207 1 16 HELIX 9 9 SER A 222 ALA A 227 1 6 HELIX 10 10 ALA A 227 ALA A 235 1 9 HELIX 11 11 SER A 266 TYR A 285 1 20 HELIX 12 12 THR A 290 SER A 302 1 13 HELIX 13 13 SER A 302 ALA A 334 1 33 HELIX 14 14 SER A 341 GLN A 346 1 6 HELIX 15 15 THR A 356 GLY A 368 1 13 HELIX 16 16 ALA A 380 LEU A 382 5 3 HELIX 17 17 ASN A 386 LEU A 398 1 13 SHEET 1 A 2 VAL A 31 ASN A 32 0 SHEET 2 A 2 ILE A 369 TYR A 370 1 O TYR A 370 N VAL A 31 SHEET 1 B 7 VAL A 97 ALA A 102 0 SHEET 2 B 7 GLY A 258 ILE A 263 -1 O LEU A 260 N ALA A 100 SHEET 3 B 7 VAL A 240 SER A 245 -1 N SER A 244 O ALA A 259 SHEET 4 B 7 VAL A 209 ILE A 214 1 N LEU A 212 O PHE A 241 SHEET 5 B 7 ILE A 176 HIS A 180 1 N LEU A 179 O ASP A 213 SHEET 6 B 7 LYS A 124 ASP A 129 1 N ALA A 126 O ILE A 176 SHEET 7 B 7 GLU A 145 PRO A 150 1 O GLU A 145 N VAL A 125 SHEET 1 C 2 TYR A 152 ASP A 153 0 SHEET 2 C 2 GLY A 158 VAL A 159 -1 O GLY A 158 N ASP A 153 SHEET 1 D 2 PHE A 350 TYR A 352 0 SHEET 2 D 2 ARG A 376 CYS A 378 -1 O ILE A 377 N SER A 351 CISPEP 1 ASP A 129 PRO A 130 0 -5.02 CISPEP 2 ASN A 185 PRO A 186 0 20.65 SITE 1 AC1 7 GLN A 101 THR A 106 ILE A 111 TYR A 285 SITE 2 AC1 7 SER A 286 ASN A 287 HOH A 512 CRYST1 66.190 66.190 156.860 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015108 0.008723 0.000000 0.00000 SCALE2 0.000000 0.017445 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006375 0.00000