HEADER UNKNOWN FUNCTION 30-MAR-12 4EFP TITLE BOMBYX MORI LIPOPROTEIN 7 ISOLATED FROM ITS NATURAL SOURCE AT 1.33 A TITLE 2 RESOLUTION CAVEAT 4EFP THERE IS A SIGNIFICANT DISCREPANCY BETWEEN THE EXPECTED AND CAVEAT 2 4EFP THE OBSERVED GEOMETRY OF THE HYDROXYL GROUP OF MODIFIED CAVEAT 3 4EFP RESIDUE 0AF. COMPND MOL_ID: 1; COMPND 2 MOLECULE: 30KDA PROTEIN; COMPND 3 CHAIN: A, B SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOMBYX MORI; SOURCE 3 ORGANISM_COMMON: SILK MOTH,SILKWORM; SOURCE 4 ORGANISM_TAXID: 7091; SOURCE 5 OTHER_DETAILS: PROTEIN ISOLATED FROM FIFTH INSTAR LARVAE KEYWDS VHS DOMAIN, BETA-TREFOIL, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR A.J.PIETRZYK,S.PANJIKAR,A.BUJACZ,J.MUELLER-DIECKMANN,M.JASKOLSKI, AUTHOR 2 G.BUJACZ REVDAT 2 23-JAN-13 4EFP 1 JRNL REVDAT 1 29-AUG-12 4EFP 0 JRNL AUTH A.J.PIETRZYK,S.PANJIKAR,A.BUJACZ,J.MUELLER-DIECKMANN, JRNL AUTH 2 M.LOCHYNSKA,M.JASKOLSKI,G.BUJACZ JRNL TITL HIGH-RESOLUTION STRUCTURE OF BOMBYX MORI LIPOPROTEIN 7: JRNL TITL 2 CRYSTALLOGRAPHIC DETERMINATION OF THE IDENTITY OF THE JRNL TITL 3 PROTEIN AND ITS POTENTIAL ROLE IN DETOXIFICATION. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 68 1140 2012 JRNL REFN ISSN 0907-4449 JRNL PMID 22948915 JRNL DOI 10.1107/S0907444912021555 REMARK 2 REMARK 2 RESOLUTION. 1.33 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.33 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 23.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.6 REMARK 3 NUMBER OF REFLECTIONS : 93451 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.231 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.300 REMARK 3 FREE R VALUE TEST SET COUNT : 1223 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.33 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5348 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 71.67 REMARK 3 BIN R VALUE (WORKING SET) : 0.1880 REMARK 3 BIN FREE R VALUE SET COUNT : 68 REMARK 3 BIN FREE R VALUE : 0.2790 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3836 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 43 REMARK 3 SOLVENT ATOMS : 551 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 12.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.08 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.11000 REMARK 3 B22 (A**2) : -0.59000 REMARK 3 B33 (A**2) : 0.32000 REMARK 3 B12 (A**2) : -0.49000 REMARK 3 B13 (A**2) : 0.41000 REMARK 3 B23 (A**2) : -0.03000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.072 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.070 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.027 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.250 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.936 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4161 ; 0.020 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5652 ; 1.943 ; 1.956 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 527 ; 6.654 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 211 ;33.399 ;24.360 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 749 ;13.718 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 25 ;14.750 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 596 ; 0.219 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3195 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2430 ; 2.236 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3943 ; 3.188 ; 2.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1731 ; 4.678 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1679 ; 6.082 ; 4.500 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 4161 ; 2.257 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4EFP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-APR-12. REMARK 100 THE RCSB ID CODE IS RCSB071559. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-MAR-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.918 REMARK 200 MONOCHROMATOR : KMC-1 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 94674 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.330 REMARK 200 RESOLUTION RANGE LOW (A) : 23.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.0 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.10900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.6600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.33 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 78.8 REMARK 200 DATA REDUNDANCY IN SHELL : 1.60 REMARK 200 R MERGE FOR SHELL (I) : 0.31900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.420 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: AUTO-RICKSHAW MR-SAD PROTOCOL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES BUFFER, 22% PEG 3350, 200 REMARK 280 MM KSCN, PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 1 REMARK 465 ASP A 2 REMARK 465 SER A 3 REMARK 465 ASP A 4 REMARK 465 ALA B 1 REMARK 465 ASP B 2 REMARK 465 SER B 3 REMARK 465 ASP B 4 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 78 151.85 -48.90 REMARK 500 THR A 123 -17.95 -141.85 REMARK 500 ASP A 188 -127.65 51.95 REMARK 500 ASP B 188 -124.21 47.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD B 302 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SCN B 301 N REMARK 620 2 GLU B 40 OE2 106.9 REMARK 620 3 LYS B 37 O 80.9 138.3 REMARK 620 4 GLU B 40 OE1 83.6 54.0 87.6 REMARK 620 5 HOH B 553 O 161.8 85.7 81.0 93.9 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CD A 302 CD REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SCN A 301 N REMARK 620 2 GLU A 40 OE2 106.5 REMARK 620 3 LYS A 37 O 79.4 140.3 REMARK 620 4 GLU A 40 OE1 85.8 53.7 88.6 REMARK 620 5 HOH A 600 O 159.2 89.3 79.8 93.2 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K B 303 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 36 OE1 REMARK 620 2 HOH B 631 O 76.4 REMARK 620 3 HOH B 633 O 136.1 147.2 REMARK 620 4 HOH B 632 O 76.9 75.1 111.2 REMARK 620 5 HOH B 634 O 92.8 124.6 67.4 49.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 K A 303 K REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 36 OE1 REMARK 620 2 GLU A 36 OE2 51.7 REMARK 620 3 HOH A 662 O 78.0 77.6 REMARK 620 4 HOH A 664 O 141.5 166.8 102.0 REMARK 620 5 HOH A 657 O 74.9 88.6 152.7 96.7 REMARK 620 6 HOH A 571 O 151.9 100.2 95.7 66.6 110.1 REMARK 620 7 HOH A 437 O 88.4 52.1 44.1 118.7 137.8 69.2 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SCN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGE A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SCN B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CD B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE K B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG B 305 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3PUB RELATED DB: PDB REMARK 900 RELATED ID: 4EFQ RELATED DB: PDB REMARK 900 RELATED ID: 4EFR RELATED DB: PDB DBREF 4EFP A 1 239 UNP E5EVW2 E5EVW2_BOMMO 18 256 DBREF 4EFP B 1 239 UNP E5EVW2 E5EVW2_BOMMO 18 256 SEQRES 1 A 239 ALA ASP SER ASP VAL PRO ASN ASP ILE LEU GLU GLU GLN SEQRES 2 A 239 LEU TYR ASN SER ILE VAL VAL ALA ASP TYR ASP SER ALA SEQRES 3 A 239 VAL GLU LYS SER LYS HIS LEU TYR GLU GLU LYS LYS SER SEQRES 4 A 239 GLU VAL ILE THR ASN VAL VAL ASN LYS LEU ILE ARG ASN SEQRES 5 A 239 ASN LYS MET ASN CYS MET GLU TYR ALA TYR GLN LEU TRP SEQRES 6 A 239 LEU GLN GLY SER LYS ASP ILE VAL ARG ASP CYS PHE PRO SEQRES 7 A 239 VAL GLU PHE ARG LEU ILE PHE ALA GLU ASN ALA ILE LYS SEQRES 8 A 239 LEU MET TYR LYS ARG ASP GLY LEU ALA LEU THR LEU SER SEQRES 9 A 239 ASN ASP VAL HIS GLY ASN ASP GLY ARG LEU ALA PHE GLY SEQRES 10 A 239 ASP GLY LYS ASP LYS THR SER PRO LYS VAL SER TRP LYS SEQRES 11 A 239 PHE ILE ALA LEU TRP GLU ASN ASN LYS VAL TYR PHE LYS SEQRES 12 A 239 ILE LEU ASN THR GLU ARG ASN GLN TYR LEU VAL LEU GLY SEQRES 13 A 239 VAL GLY THR ASN PRO ASN GLY ASP HIS MET ALA PHE GLY SEQRES 14 A 239 VAL ASN SER VAL ASP SER PHE ARG ALA GLN 0AF TYR LEU SEQRES 15 A 239 GLN PRO ALA LYS TYR ASP LYS ASP ASN LEU PHE TYR ILE SEQRES 16 A 239 TYR ASN ARG GLU TYR SER LYS ALA LEU THR LEU SER ARG SEQRES 17 A 239 THR LEU GLU THR SER GLY ASN ARG MET ALA TRP GLY TYR SEQRES 18 A 239 ASN GLY ARG VAL ILE GLY SER PRO GLU HIS TYR ALA TRP SEQRES 19 A 239 GLY VAL LYS ALA PHE SEQRES 1 B 239 ALA ASP SER ASP VAL PRO ASN ASP ILE LEU GLU GLU GLN SEQRES 2 B 239 LEU TYR ASN SER ILE VAL VAL ALA ASP TYR ASP SER ALA SEQRES 3 B 239 VAL GLU LYS SER LYS HIS LEU TYR GLU GLU LYS LYS SER SEQRES 4 B 239 GLU VAL ILE THR ASN VAL VAL ASN LYS LEU ILE ARG ASN SEQRES 5 B 239 ASN LYS MET ASN CYS MET GLU TYR ALA TYR GLN LEU TRP SEQRES 6 B 239 LEU GLN GLY SER LYS ASP ILE VAL ARG ASP CYS PHE PRO SEQRES 7 B 239 VAL GLU PHE ARG LEU ILE PHE ALA GLU ASN ALA ILE LYS SEQRES 8 B 239 LEU MET TYR LYS ARG ASP GLY LEU ALA LEU THR LEU SER SEQRES 9 B 239 ASN ASP VAL HIS GLY ASN ASP GLY ARG LEU ALA PHE GLY SEQRES 10 B 239 ASP GLY LYS ASP LYS THR SER PRO LYS VAL SER TRP LYS SEQRES 11 B 239 PHE ILE ALA LEU TRP GLU ASN ASN LYS VAL TYR PHE LYS SEQRES 12 B 239 ILE LEU ASN THR GLU ARG ASN GLN TYR LEU VAL LEU GLY SEQRES 13 B 239 VAL GLY THR ASN PRO ASN GLY ASP HIS MET ALA PHE GLY SEQRES 14 B 239 VAL ASN SER VAL ASP SER PHE ARG ALA GLN 0AF TYR LEU SEQRES 15 B 239 GLN PRO ALA LYS TYR ASP LYS ASP ASN LEU PHE TYR ILE SEQRES 16 B 239 TYR ASN ARG GLU TYR SER LYS ALA LEU THR LEU SER ARG SEQRES 17 B 239 THR LEU GLU THR SER GLY ASN ARG MET ALA TRP GLY TYR SEQRES 18 B 239 ASN GLY ARG VAL ILE GLY SER PRO GLU HIS TYR ALA TRP SEQRES 19 B 239 GLY VAL LYS ALA PHE MODRES 4EFP 0AF A 180 TRP 7-HYDROXY-L-TRYPTOPHAN MODRES 4EFP 0AF B 180 TRP 7-HYDROXY-L-TRYPTOPHAN HET 0AF A 180 15 HET 0AF B 180 15 HET SCN A 301 3 HET CD A 302 1 HET K A 303 1 HET EDO A 304 4 HET EDO A 305 4 HET EDO A 306 4 HET PGE A 307 10 HET SCN B 301 3 HET CD B 302 1 HET K B 303 1 HET EDO B 304 4 HET PEG B 305 7 HETNAM 0AF 7-HYDROXY-L-TRYPTOPHAN HETNAM SCN THIOCYANATE ION HETNAM CD CADMIUM ION HETNAM K POTASSIUM ION HETNAM EDO 1,2-ETHANEDIOL HETNAM PGE TRIETHYLENE GLYCOL HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN EDO ETHYLENE GLYCOL FORMUL 1 0AF 2(C11 H12 N2 O3) FORMUL 3 SCN 2(C N S 1-) FORMUL 4 CD 2(CD 2+) FORMUL 5 K 2(K 1+) FORMUL 6 EDO 4(C2 H6 O2) FORMUL 9 PGE C6 H14 O4 FORMUL 14 PEG C4 H10 O3 FORMUL 15 HOH *551(H2 O) HELIX 1 1 PRO A 6 VAL A 20 1 15 HELIX 2 2 ASP A 22 GLU A 36 1 15 HELIX 3 3 LYS A 38 ASN A 52 1 15 HELIX 4 4 MET A 55 GLN A 67 1 13 HELIX 5 5 SER A 69 PHE A 77 1 9 HELIX 6 6 PRO A 78 ALA A 86 1 9 HELIX 7 7 HIS A 108 GLY A 112 5 5 HELIX 8 8 SER A 124 VAL A 127 5 4 HELIX 9 9 SER A 175 ALA A 178 5 4 HELIX 10 10 SER A 228 ALA A 233 1 6 HELIX 11 11 PRO B 6 VAL B 20 1 15 HELIX 12 12 ASP B 22 GLU B 36 1 15 HELIX 13 13 LYS B 38 ASN B 52 1 15 HELIX 14 14 MET B 55 GLN B 67 1 13 HELIX 15 15 SER B 69 PHE B 77 1 9 HELIX 16 16 PRO B 78 ALA B 86 1 9 HELIX 17 17 SER B 124 VAL B 127 5 4 HELIX 18 18 SER B 175 ALA B 178 5 4 HELIX 19 19 SER B 228 ALA B 233 1 6 SHEET 1 A 8 ALA A 203 LEU A 206 0 SHEET 2 A 8 ARG A 216 TYR A 221 -1 O TYR A 221 N ALA A 203 SHEET 3 A 8 HIS A 165 VAL A 170 -1 N HIS A 165 O GLY A 220 SHEET 4 A 8 GLN A 151 THR A 159 -1 N TYR A 152 O VAL A 170 SHEET 5 A 8 LYS A 139 ASN A 146 -1 N ASN A 146 O GLN A 151 SHEET 6 A 8 TRP A 129 GLU A 136 -1 N ILE A 132 O LYS A 143 SHEET 7 A 8 ILE A 90 TYR A 94 -1 N ILE A 90 O TRP A 129 SHEET 8 A 8 TRP A 234 ALA A 238 -1 O GLY A 235 N MET A 93 SHEET 1 B 6 TRP A 234 ALA A 238 0 SHEET 2 B 6 ILE A 90 TYR A 94 -1 N MET A 93 O GLY A 235 SHEET 3 B 6 LEU A 99 LEU A 103 -1 O LEU A 99 N TYR A 94 SHEET 4 B 6 ARG A 113 ASP A 118 -1 O ASP A 118 N ALA A 100 SHEET 5 B 6 ARG A 216 TYR A 221 -1 O ARG A 216 N GLY A 117 SHEET 6 B 6 ALA A 203 LEU A 206 -1 N ALA A 203 O TYR A 221 SHEET 1 C 7 HIS A 165 VAL A 170 0 SHEET 2 C 7 ARG A 113 ASP A 118 -1 N ARG A 113 O GLY A 169 SHEET 3 C 7 LEU A 99 LEU A 103 -1 N ALA A 100 O ASP A 118 SHEET 4 C 7 ILE A 90 TYR A 94 -1 N TYR A 94 O LEU A 99 SHEET 5 C 7 TRP A 129 GLU A 136 -1 O TRP A 129 N ILE A 90 SHEET 6 C 7 LYS A 139 ASN A 146 -1 O LYS A 143 N ILE A 132 SHEET 7 C 7 GLN A 151 THR A 159 -1 O GLN A 151 N ASN A 146 SHEET 1 D 2 0AF A 180 TYR A 187 0 SHEET 2 D 2 ASP A 190 ASN A 197 -1 O TYR A 196 N TYR A 181 SHEET 1 E 8 ALA B 203 LEU B 206 0 SHEET 2 E 8 ARG B 216 TYR B 221 -1 O TYR B 221 N ALA B 203 SHEET 3 E 8 HIS B 165 VAL B 170 -1 N HIS B 165 O GLY B 220 SHEET 4 E 8 GLN B 151 THR B 159 -1 N TYR B 152 O VAL B 170 SHEET 5 E 8 LYS B 139 ASN B 146 -1 N ASN B 146 O GLN B 151 SHEET 6 E 8 TRP B 129 GLU B 136 -1 N ILE B 132 O LYS B 143 SHEET 7 E 8 ILE B 90 TYR B 94 -1 N ILE B 90 O TRP B 129 SHEET 8 E 8 TRP B 234 ALA B 238 -1 O GLY B 235 N MET B 93 SHEET 1 F 6 TRP B 234 ALA B 238 0 SHEET 2 F 6 ILE B 90 TYR B 94 -1 N MET B 93 O GLY B 235 SHEET 3 F 6 LEU B 99 LEU B 103 -1 O LEU B 99 N TYR B 94 SHEET 4 F 6 ARG B 113 GLY B 117 -1 O PHE B 116 N THR B 102 SHEET 5 F 6 ARG B 216 TYR B 221 -1 O ARG B 216 N GLY B 117 SHEET 6 F 6 ALA B 203 LEU B 206 -1 N ALA B 203 O TYR B 221 SHEET 1 G 7 HIS B 165 VAL B 170 0 SHEET 2 G 7 ARG B 113 GLY B 117 -1 N ALA B 115 O ALA B 167 SHEET 3 G 7 LEU B 99 LEU B 103 -1 N THR B 102 O PHE B 116 SHEET 4 G 7 ILE B 90 TYR B 94 -1 N TYR B 94 O LEU B 99 SHEET 5 G 7 TRP B 129 GLU B 136 -1 O TRP B 129 N ILE B 90 SHEET 6 G 7 LYS B 139 ASN B 146 -1 O LYS B 143 N ILE B 132 SHEET 7 G 7 GLN B 151 THR B 159 -1 O GLN B 151 N ASN B 146 SHEET 1 H 2 0AF B 180 TYR B 187 0 SHEET 2 H 2 ASP B 190 ASN B 197 -1 O TYR B 196 N TYR B 181 LINK C 0AF A 180 N TYR A 181 1555 1555 1.32 LINK C 0AF B 180 N TYR B 181 1555 1555 1.32 LINK N SCN B 301 CD CD B 302 1555 1555 2.29 LINK N SCN A 301 CD CD A 302 1555 1555 2.30 LINK OE1 GLU B 36 K K B 303 1555 1555 2.33 LINK OE2 GLU A 40 CD CD A 302 1555 1555 2.37 LINK OE2 GLU B 40 CD CD B 302 1555 1555 2.40 LINK O LYS B 37 CD CD B 302 1555 1555 2.41 LINK O LYS A 37 CD CD A 302 1555 1555 2.42 LINK OE1 GLU A 40 CD CD A 302 1555 1555 2.49 LINK OE1 GLU B 40 CD CD B 302 1555 1555 2.49 LINK OE1 GLU A 36 K K A 303 1555 1555 2.53 LINK OE2 GLU A 36 K K A 303 1555 1555 2.57 LINK K K B 303 O HOH B 631 1555 1555 2.21 LINK CD CD A 302 O HOH A 600 1555 1555 2.34 LINK K K A 303 O HOH A 662 1555 1555 2.45 LINK K K A 303 O HOH A 664 1555 1555 2.48 LINK K K B 303 O HOH B 633 1555 1555 2.49 LINK CD CD B 302 O HOH B 553 1555 1555 2.50 LINK K K A 303 O HOH A 657 1555 1555 2.52 LINK K K A 303 O HOH A 571 1555 1555 2.65 LINK K K B 303 O HOH B 632 1555 1555 2.85 LINK K K B 303 O HOH B 634 1555 1555 3.26 LINK K K A 303 O HOH A 437 1555 1555 3.48 SITE 1 AC1 6 LYS A 37 LYS A 38 SER A 39 GLU A 40 SITE 2 AC1 6 CD A 302 GLU B 199 SITE 1 AC2 5 LYS A 37 GLU A 40 SCN A 301 HOH A 600 SITE 2 AC2 5 GLU B 199 SITE 1 AC3 5 GLU A 36 HOH A 571 HOH A 657 HOH A 662 SITE 2 AC3 5 HOH A 664 SITE 1 AC4 4 ASP A 71 ARG A 74 ASP A 75 HOH A 684 SITE 1 AC5 5 TYR A 62 LEU A 134 TRP A 135 ASN B 150 SITE 2 AC5 5 LYS B 189 SITE 1 AC6 8 GLU A 136 PHE A 176 GLN A 179 ARG A 198 SITE 2 AC6 8 HOH A 643 HOH A 644 HOH A 690 HOH B 557 SITE 1 AC7 10 ASN A 160 ASP A 164 THR A 205 TRP A 219 SITE 2 AC7 10 TYR A 221 HOH A 510 HOH A 625 HOH A 640 SITE 3 AC7 10 HOH A 641 ASP B 106 SITE 1 AC8 5 GLU A 199 LYS B 37 SER B 39 GLU B 40 SITE 2 AC8 5 CD B 302 SITE 1 AC9 5 GLU A 199 LYS B 37 GLU B 40 SCN B 301 SITE 2 AC9 5 HOH B 553 SITE 1 BC1 4 GLU B 36 HOH B 631 HOH B 632 HOH B 633 SITE 1 BC2 4 HIS B 231 TYR B 232 HOH B 561 HOH B 628 SITE 1 BC3 6 ASP B 164 THR B 205 SER B 207 TRP B 219 SITE 2 BC3 6 HOH B 476 HOH B 629 CRYST1 42.211 49.993 55.244 93.41 94.70 102.78 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023691 0.005375 0.002383 0.00000 SCALE2 0.000000 0.020511 0.001641 0.00000 SCALE3 0.000000 0.000000 0.018221 0.00000