HEADER LIGASE 30-MAR-12 4EG0 TITLE CRYSTAL STRUCTURE OF D-ALANINE--D-ALANINE LIGASE FROM BURKHOLDERIA TITLE 2 AMBIFARIA COMPND MOL_ID: 1; COMPND 2 MOLECULE: D-ALANINE--D-ALANINE LIGASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: D-ALA-D-ALA LIGASE, D-ALANYLALANINE SYNTHETASE; COMPND 5 EC: 6.3.2.4; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BURKHOLDERIA AMBIFARIA; SOURCE 3 ORGANISM_TAXID: 398577; SOURCE 4 STRAIN: MC40-6; SOURCE 5 GENE: DDL, BAMMC406_0490; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS STRUCTURAL GENOMICS, SEATTLE STRUCTURAL GENOMICS CENTER FOR KEYWDS 2 INFECTIOUS DISEASE, SSGCID, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 3 13-SEP-23 4EG0 1 REMARK SEQADV REVDAT 2 30-OCT-13 4EG0 1 JRNL REVDAT 1 09-MAY-12 4EG0 0 JRNL AUTH L.BAUGH,L.A.GALLAGHER,R.PATRAPUVICH,M.C.CLIFTON, JRNL AUTH 2 A.S.GARDBERG,T.E.EDWARDS,B.ARMOUR,D.W.BEGLEY,S.H.DIETERICH, JRNL AUTH 3 D.M.DRANOW,J.ABENDROTH,J.W.FAIRMAN,D.FOX,B.L.STAKER,I.PHAN, JRNL AUTH 4 A.GILLESPIE,R.CHOI,S.NAKAZAWA-HEWITT,M.T.NGUYEN,A.NAPULI, JRNL AUTH 5 L.BARRETT,G.W.BUCHKO,R.STACY,P.J.MYLER,L.J.STEWART,C.MANOIL, JRNL AUTH 6 W.C.VAN VOORHIS JRNL TITL COMBINING FUNCTIONAL AND STRUCTURAL GENOMICS TO SAMPLE THE JRNL TITL 2 ESSENTIAL BURKHOLDERIA STRUCTOME. JRNL REF PLOS ONE V. 8 53851 2013 JRNL REFN ESSN 1932-6203 JRNL PMID 23382856 JRNL DOI 10.1371/JOURNAL.PONE.0053851 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.7.3_928 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.98 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 76559 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.200 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 3840 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.9780 - 4.9469 0.98 2698 138 0.1753 0.1895 REMARK 3 2 4.9469 - 3.9275 1.00 2728 142 0.1387 0.1594 REMARK 3 3 3.9275 - 3.4313 1.00 2681 172 0.1574 0.1940 REMARK 3 4 3.4313 - 3.1177 1.00 2683 166 0.1756 0.1901 REMARK 3 5 3.1177 - 2.8943 1.00 2710 127 0.1836 0.2016 REMARK 3 6 2.8943 - 2.7237 1.00 2686 143 0.1774 0.1889 REMARK 3 7 2.7237 - 2.5873 1.00 2690 146 0.1710 0.2083 REMARK 3 8 2.5873 - 2.4747 1.00 2700 145 0.1672 0.2023 REMARK 3 9 2.4747 - 2.3794 1.00 2685 142 0.1699 0.1832 REMARK 3 10 2.3794 - 2.2973 1.00 2692 145 0.1712 0.1965 REMARK 3 11 2.2973 - 2.2255 1.00 2694 136 0.1606 0.2172 REMARK 3 12 2.2255 - 2.1619 1.00 2683 150 0.1733 0.2085 REMARK 3 13 2.1619 - 2.1050 1.00 2666 133 0.1668 0.1994 REMARK 3 14 2.1050 - 2.0536 1.00 2711 148 0.1687 0.1951 REMARK 3 15 2.0536 - 2.0070 1.00 2727 121 0.1746 0.1991 REMARK 3 16 2.0070 - 1.9642 1.00 2685 150 0.1778 0.2220 REMARK 3 17 1.9642 - 1.9250 1.00 2685 132 0.1721 0.2238 REMARK 3 18 1.9250 - 1.8886 1.00 2666 131 0.1831 0.2276 REMARK 3 19 1.8886 - 1.8549 1.00 2707 149 0.1856 0.2336 REMARK 3 20 1.8549 - 1.8235 1.00 2701 148 0.2151 0.2600 REMARK 3 21 1.8235 - 1.7940 1.00 2647 149 0.2074 0.2423 REMARK 3 22 1.7940 - 1.7664 1.00 2729 135 0.2110 0.2285 REMARK 3 23 1.7664 - 1.7405 1.00 2681 137 0.2198 0.2712 REMARK 3 24 1.7405 - 1.7159 1.00 2694 130 0.2163 0.2374 REMARK 3 25 1.7159 - 1.6928 1.00 2712 139 0.2535 0.2856 REMARK 3 26 1.6928 - 1.6708 1.00 2622 136 0.2568 0.2820 REMARK 3 27 1.6708 - 1.6500 1.00 2756 150 0.2761 0.2978 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.30 REMARK 3 SHRINKAGE RADIUS : 1.11 REMARK 3 K_SOL : 0.37 REMARK 3 B_SOL : 52.28 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.250 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 30.18 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.18 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 6.19470 REMARK 3 B22 (A**2) : -6.14280 REMARK 3 B33 (A**2) : -0.05190 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.64420 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.018 4448 REMARK 3 ANGLE : 1.740 6058 REMARK 3 CHIRALITY : 0.131 697 REMARK 3 PLANARITY : 0.009 797 REMARK 3 DIHEDRAL : 12.577 1601 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 4:64) REMARK 3 ORIGIN FOR THE GROUP (A): 8.8721 19.6504 35.1807 REMARK 3 T TENSOR REMARK 3 T11: 0.4109 T22: 0.1905 REMARK 3 T33: 0.1345 T12: 0.0046 REMARK 3 T13: 0.0394 T23: -0.0226 REMARK 3 L TENSOR REMARK 3 L11: 5.1677 L22: 3.6227 REMARK 3 L33: 2.7681 L12: 0.0757 REMARK 3 L13: -0.4057 L23: -0.4046 REMARK 3 S TENSOR REMARK 3 S11: -0.0973 S12: -0.5330 S13: -0.0984 REMARK 3 S21: 0.9284 S22: 0.1043 S23: -0.0129 REMARK 3 S31: 0.1223 S32: -0.1690 S33: -0.0222 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 65:121) REMARK 3 ORIGIN FOR THE GROUP (A): 18.5884 11.8996 18.6920 REMARK 3 T TENSOR REMARK 3 T11: 0.1495 T22: 0.1173 REMARK 3 T33: 0.1617 T12: 0.0135 REMARK 3 T13: 0.0128 T23: 0.0148 REMARK 3 L TENSOR REMARK 3 L11: 1.0264 L22: 0.9405 REMARK 3 L33: 1.7065 L12: -0.5283 REMARK 3 L13: -0.3089 L23: 0.6706 REMARK 3 S TENSOR REMARK 3 S11: -0.1514 S12: -0.1267 S13: -0.0814 REMARK 3 S21: 0.2311 S22: 0.0562 S23: 0.0761 REMARK 3 S31: 0.2084 S32: 0.1528 S33: 0.0928 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 122:184) REMARK 3 ORIGIN FOR THE GROUP (A): 39.3349 18.1108 8.8190 REMARK 3 T TENSOR REMARK 3 T11: 0.1092 T22: 0.2337 REMARK 3 T33: 0.2884 T12: -0.0301 REMARK 3 T13: -0.0321 T23: 0.0222 REMARK 3 L TENSOR REMARK 3 L11: 5.1535 L22: 3.8370 REMARK 3 L33: 2.7455 L12: 0.5187 REMARK 3 L13: 1.8764 L23: 0.2458 REMARK 3 S TENSOR REMARK 3 S11: 0.3565 S12: -0.0858 S13: -0.3776 REMARK 3 S21: 0.3551 S22: -0.1733 S23: -0.4213 REMARK 3 S31: 0.2103 S32: -0.0403 S33: -0.1581 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 185:240) REMARK 3 ORIGIN FOR THE GROUP (A): 15.1568 30.2100 7.4168 REMARK 3 T TENSOR REMARK 3 T11: 0.0782 T22: 0.1187 REMARK 3 T33: 0.1433 T12: 0.0004 REMARK 3 T13: -0.0188 T23: 0.0057 REMARK 3 L TENSOR REMARK 3 L11: 1.1329 L22: 2.8727 REMARK 3 L33: 3.8219 L12: -0.3263 REMARK 3 L13: -1.8171 L23: -0.3524 REMARK 3 S TENSOR REMARK 3 S11: 0.1006 S12: -0.0462 S13: 0.2089 REMARK 3 S21: -0.0380 S22: 0.0096 S23: 0.1086 REMARK 3 S31: -0.2821 S32: -0.0126 S33: -0.0991 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 241:311) REMARK 3 ORIGIN FOR THE GROUP (A): 11.5087 22.8854 13.7283 REMARK 3 T TENSOR REMARK 3 T11: 0.0867 T22: 0.1344 REMARK 3 T33: 0.1552 T12: 0.0092 REMARK 3 T13: -0.0009 T23: -0.0110 REMARK 3 L TENSOR REMARK 3 L11: 1.3951 L22: 1.4311 REMARK 3 L33: 3.4779 L12: 0.0896 REMARK 3 L13: -1.2618 L23: -0.6223 REMARK 3 S TENSOR REMARK 3 S11: 0.0364 S12: -0.0069 S13: 0.0462 REMARK 3 S21: 0.1360 S22: -0.0303 S23: 0.2140 REMARK 3 S31: -0.2319 S32: -0.1998 S33: 0.0114 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN B AND RESID 4:21) REMARK 3 ORIGIN FOR THE GROUP (A): 28.4035 -7.3143 36.4414 REMARK 3 T TENSOR REMARK 3 T11: 0.4371 T22: 0.1618 REMARK 3 T33: 0.1717 T12: 0.0525 REMARK 3 T13: -0.0272 T23: 0.0026 REMARK 3 L TENSOR REMARK 3 L11: 3.4961 L22: 4.0714 REMARK 3 L33: 4.7198 L12: -0.2864 REMARK 3 L13: 0.8790 L23: 0.8420 REMARK 3 S TENSOR REMARK 3 S11: -0.2088 S12: -0.5676 S13: 0.1235 REMARK 3 S21: 0.7153 S22: 0.1402 S23: 0.1706 REMARK 3 S31: -0.3627 S32: 0.2667 S33: 0.0779 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN B AND RESID 22:62) REMARK 3 ORIGIN FOR THE GROUP (A): 23.2645 -9.7750 38.2643 REMARK 3 T TENSOR REMARK 3 T11: 0.5317 T22: 0.2595 REMARK 3 T33: 0.2457 T12: 0.1083 REMARK 3 T13: 0.1026 T23: 0.0644 REMARK 3 L TENSOR REMARK 3 L11: 0.7484 L22: 3.9479 REMARK 3 L33: 0.3659 L12: -1.6276 REMARK 3 L13: 0.1880 L23: -0.0522 REMARK 3 S TENSOR REMARK 3 S11: -0.4003 S12: -0.3930 S13: -0.0885 REMARK 3 S21: 1.1263 S22: 0.3448 S23: 0.6103 REMARK 3 S31: -0.2937 S32: -0.1660 S33: -0.0419 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN B AND RESID 63:117) REMARK 3 ORIGIN FOR THE GROUP (A): 22.6637 -0.3122 21.5891 REMARK 3 T TENSOR REMARK 3 T11: 0.2358 T22: 0.1063 REMARK 3 T33: 0.1277 T12: 0.0307 REMARK 3 T13: -0.0134 T23: -0.0063 REMARK 3 L TENSOR REMARK 3 L11: 0.8358 L22: 0.8813 REMARK 3 L33: 2.3193 L12: -0.1634 REMARK 3 L13: -0.1672 L23: -0.3893 REMARK 3 S TENSOR REMARK 3 S11: -0.0720 S12: -0.1170 S13: 0.0128 REMARK 3 S21: 0.3348 S22: 0.0794 S23: -0.1007 REMARK 3 S31: -0.1559 S32: -0.0745 S33: -0.0051 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN B AND RESID 118:185) REMARK 3 ORIGIN FOR THE GROUP (A): 7.8102 -6.5696 0.6447 REMARK 3 T TENSOR REMARK 3 T11: 0.1640 T22: 0.4659 REMARK 3 T33: 0.5594 T12: 0.0240 REMARK 3 T13: -0.0871 T23: -0.1095 REMARK 3 L TENSOR REMARK 3 L11: 0.5171 L22: 2.8949 REMARK 3 L33: 2.9324 L12: 0.3159 REMARK 3 L13: 0.2542 L23: -0.2468 REMARK 3 S TENSOR REMARK 3 S11: 0.2125 S12: 0.2421 S13: -0.0588 REMARK 3 S21: -0.1356 S22: -0.2073 S23: 1.5002 REMARK 3 S31: 0.0347 S32: -1.2976 S33: -0.0487 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN B AND RESID 186:311) REMARK 3 ORIGIN FOR THE GROUP (A): 30.2011 -14.8280 14.3651 REMARK 3 T TENSOR REMARK 3 T11: 0.1141 T22: 0.1137 REMARK 3 T33: 0.1190 T12: -0.0128 REMARK 3 T13: 0.0029 T23: 0.0063 REMARK 3 L TENSOR REMARK 3 L11: 0.9580 L22: 2.5987 REMARK 3 L33: 3.6269 L12: -0.6021 REMARK 3 L13: 0.2401 L23: 0.5461 REMARK 3 S TENSOR REMARK 3 S11: 0.0005 S12: -0.0281 S13: -0.1011 REMARK 3 S21: 0.1808 S22: -0.0213 S23: -0.0304 REMARK 3 S31: 0.1995 S32: -0.0199 S33: 0.0027 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4EG0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-APR-12. REMARK 100 THE DEPOSITION ID IS D_1000071570. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-MAR-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97740 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 76670 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.03500 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 17.5700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.47800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.290 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1IOV REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.97 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MORPHEUS CONDITION A12: 0.06 M REMARK 280 MAGNESIUM CHLORIDE, 0.06 M CALCIUM CHLORIDE, 0.1 M TRIS-BICINE, REMARK 280 37.5% MPD/PEG1000/PEG3350, 20.26 MG/ML BUAMA.00119.A.A1 PS01236, REMARK 280 PH 8.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 59.05500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AS PER THE AUTHORS THE BIOLOGICAL ASSEMBLY IS UNKNOWN REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3000 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23280 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -6.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 PRO A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 GLY A 3 REMARK 465 GLU A 152 REMARK 465 GLY A 153 REMARK 465 SER A 154 REMARK 465 SER A 155 REMARK 465 VAL A 156 REMARK 465 ALA A 211 REMARK 465 GLY A 212 REMARK 465 GLU A 213 REMARK 465 PHE A 214 REMARK 465 TYR A 215 REMARK 465 ASP A 216 REMARK 465 TYR A 217 REMARK 465 HIS A 218 REMARK 465 ALA A 219 REMARK 465 LYS A 220 REMARK 465 TYR A 221 REMARK 465 VAL A 222 REMARK 465 ALA A 223 REMARK 465 ASN A 224 REMARK 465 ASP A 225 REMARK 465 ASN A 312 REMARK 465 ASP A 313 REMARK 465 GLY B -3 REMARK 465 PRO B -2 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 GLY B 3 REMARK 465 GLU B 152 REMARK 465 GLY B 153 REMARK 465 SER B 154 REMARK 465 SER B 155 REMARK 465 VAL B 156 REMARK 465 ALA B 157 REMARK 465 ALA B 175 REMARK 465 THR B 176 REMARK 465 ASP B 216 REMARK 465 TYR B 217 REMARK 465 HIS B 218 REMARK 465 ALA B 219 REMARK 465 LYS B 220 REMARK 465 TYR B 221 REMARK 465 VAL B 222 REMARK 465 ALA B 223 REMARK 465 ASN B 224 REMARK 465 ASN B 312 REMARK 465 ASP B 313 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 7 CG CD CE NZ REMARK 470 LYS A 58 CG CD CE NZ REMARK 470 ARG A 89 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 140 CG CD CE NZ REMARK 470 LYS A 162 CG CD CE NZ REMARK 470 LYS A 179 CG CD CE NZ REMARK 470 ARG A 293 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 305 CG CD CE NZ REMARK 470 ILE B 4 CG1 CG2 CD1 REMARK 470 LYS B 7 CG CD CE NZ REMARK 470 LYS B 104 CG CD CE NZ REMARK 470 ARG B 126 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 140 CG CD CE NZ REMARK 470 VAL B 158 CG1 CG2 REMARK 470 LYS B 162 CG CD CE NZ REMARK 470 SER B 172 OG REMARK 470 GLU B 173 CG CD OE1 OE2 REMARK 470 HIS B 177 CG ND1 CD2 CE1 NE2 REMARK 470 ASP B 178 CG OD1 OD2 REMARK 470 LYS B 179 CG CD CE NZ REMARK 470 ASP B 225 CG OD1 OD2 REMARK 470 LYS B 290 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP B 251 O HOH B 664 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O GLU B 213 O HOH A 574 2645 2.15 REMARK 500 O HOH A 508 O HOH B 599 2655 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 210 C - N - CA ANGL. DEV. = 9.6 DEGREES REMARK 500 ASP A 251 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ARG B 106 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ASP B 251 CB - CG - OD1 ANGL. DEV. = 6.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 257 -36.48 76.41 REMARK 500 ALA A 279 58.30 -143.73 REMARK 500 SER A 286 -179.69 -59.93 REMARK 500 ASP B 128 -178.72 -54.72 REMARK 500 ASP B 178 142.51 140.55 REMARK 500 LYS B 179 -51.22 82.18 REMARK 500 ASP B 257 -38.65 77.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 403 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: BUAMA.00119.A RELATED DB: TARGETTRACK DBREF 4EG0 A 1 313 UNP B1YSS6 DDL_BURA4 1 313 DBREF 4EG0 B 1 313 UNP B1YSS6 DDL_BURA4 1 313 SEQADV 4EG0 GLY A -3 UNP B1YSS6 EXPRESSION TAG SEQADV 4EG0 PRO A -2 UNP B1YSS6 EXPRESSION TAG SEQADV 4EG0 GLY A -1 UNP B1YSS6 EXPRESSION TAG SEQADV 4EG0 SER A 0 UNP B1YSS6 EXPRESSION TAG SEQADV 4EG0 GLY B -3 UNP B1YSS6 EXPRESSION TAG SEQADV 4EG0 PRO B -2 UNP B1YSS6 EXPRESSION TAG SEQADV 4EG0 GLY B -1 UNP B1YSS6 EXPRESSION TAG SEQADV 4EG0 SER B 0 UNP B1YSS6 EXPRESSION TAG SEQRES 1 A 317 GLY PRO GLY SER MET SER GLY ILE ASP PRO LYS ARG PHE SEQRES 2 A 317 GLY LYS VAL ALA VAL LEU PHE GLY GLY GLU SER ALA GLU SEQRES 3 A 317 ARG GLU VAL SER LEU THR SER GLY ARG LEU VAL LEU GLN SEQRES 4 A 317 GLY LEU ARG ASP ALA GLY ILE ASP ALA HIS PRO PHE ASP SEQRES 5 A 317 PRO ALA GLU ARG PRO LEU SER ALA LEU LYS ASP GLU GLY SEQRES 6 A 317 PHE VAL ARG ALA PHE ASN ALA LEU HIS GLY GLY TYR GLY SEQRES 7 A 317 GLU ASN GLY GLN ILE GLN GLY ALA LEU ASP PHE TYR GLY SEQRES 8 A 317 ILE ARG TYR THR GLY SER GLY VAL LEU GLY SER ALA LEU SEQRES 9 A 317 GLY LEU ASP LYS PHE ARG THR LYS LEU VAL TRP GLN GLN SEQRES 10 A 317 THR GLY VAL PRO THR PRO PRO PHE GLU THR VAL MET ARG SEQRES 11 A 317 GLY ASP ASP TYR ALA ALA ARG ALA THR ASP ILE VAL ALA SEQRES 12 A 317 LYS LEU GLY LEU PRO LEU PHE VAL LYS PRO ALA SER GLU SEQRES 13 A 317 GLY SER SER VAL ALA VAL LEU LYS VAL LYS THR ALA ASP SEQRES 14 A 317 ALA LEU PRO ALA ALA LEU SER GLU ALA ALA THR HIS ASP SEQRES 15 A 317 LYS ILE VAL ILE VAL GLU LYS SER ILE GLU GLY GLY GLY SEQRES 16 A 317 GLU TYR THR ALA CYS ILE ALA GLY ASP LEU ASP LEU PRO SEQRES 17 A 317 LEU ILE LYS ILE VAL PRO ALA GLY GLU PHE TYR ASP TYR SEQRES 18 A 317 HIS ALA LYS TYR VAL ALA ASN ASP THR GLN TYR LEU ILE SEQRES 19 A 317 PRO CYS GLY LEU PRO ALA GLU GLN GLU THR GLU LEU LYS SEQRES 20 A 317 ARG ILE ALA ARG ARG ALA PHE ASP VAL LEU GLY CYS THR SEQRES 21 A 317 ASP TRP GLY ARG ALA ASP PHE MET LEU ASP ALA ALA GLY SEQRES 22 A 317 ASN ALA TYR PHE LEU GLU VAL ASN THR ALA PRO GLY MET SEQRES 23 A 317 THR ASP HIS SER LEU PRO PRO LYS ALA ALA ARG SER ILE SEQRES 24 A 317 GLY ILE GLY TYR SER GLU LEU VAL VAL LYS VAL LEU SER SEQRES 25 A 317 LEU THR LEU ASN ASP SEQRES 1 B 317 GLY PRO GLY SER MET SER GLY ILE ASP PRO LYS ARG PHE SEQRES 2 B 317 GLY LYS VAL ALA VAL LEU PHE GLY GLY GLU SER ALA GLU SEQRES 3 B 317 ARG GLU VAL SER LEU THR SER GLY ARG LEU VAL LEU GLN SEQRES 4 B 317 GLY LEU ARG ASP ALA GLY ILE ASP ALA HIS PRO PHE ASP SEQRES 5 B 317 PRO ALA GLU ARG PRO LEU SER ALA LEU LYS ASP GLU GLY SEQRES 6 B 317 PHE VAL ARG ALA PHE ASN ALA LEU HIS GLY GLY TYR GLY SEQRES 7 B 317 GLU ASN GLY GLN ILE GLN GLY ALA LEU ASP PHE TYR GLY SEQRES 8 B 317 ILE ARG TYR THR GLY SER GLY VAL LEU GLY SER ALA LEU SEQRES 9 B 317 GLY LEU ASP LYS PHE ARG THR LYS LEU VAL TRP GLN GLN SEQRES 10 B 317 THR GLY VAL PRO THR PRO PRO PHE GLU THR VAL MET ARG SEQRES 11 B 317 GLY ASP ASP TYR ALA ALA ARG ALA THR ASP ILE VAL ALA SEQRES 12 B 317 LYS LEU GLY LEU PRO LEU PHE VAL LYS PRO ALA SER GLU SEQRES 13 B 317 GLY SER SER VAL ALA VAL LEU LYS VAL LYS THR ALA ASP SEQRES 14 B 317 ALA LEU PRO ALA ALA LEU SER GLU ALA ALA THR HIS ASP SEQRES 15 B 317 LYS ILE VAL ILE VAL GLU LYS SER ILE GLU GLY GLY GLY SEQRES 16 B 317 GLU TYR THR ALA CYS ILE ALA GLY ASP LEU ASP LEU PRO SEQRES 17 B 317 LEU ILE LYS ILE VAL PRO ALA GLY GLU PHE TYR ASP TYR SEQRES 18 B 317 HIS ALA LYS TYR VAL ALA ASN ASP THR GLN TYR LEU ILE SEQRES 19 B 317 PRO CYS GLY LEU PRO ALA GLU GLN GLU THR GLU LEU LYS SEQRES 20 B 317 ARG ILE ALA ARG ARG ALA PHE ASP VAL LEU GLY CYS THR SEQRES 21 B 317 ASP TRP GLY ARG ALA ASP PHE MET LEU ASP ALA ALA GLY SEQRES 22 B 317 ASN ALA TYR PHE LEU GLU VAL ASN THR ALA PRO GLY MET SEQRES 23 B 317 THR ASP HIS SER LEU PRO PRO LYS ALA ALA ARG SER ILE SEQRES 24 B 317 GLY ILE GLY TYR SER GLU LEU VAL VAL LYS VAL LEU SER SEQRES 25 B 317 LEU THR LEU ASN ASP HET EDO A 401 4 HET EDO A 402 4 HET EDO B 401 4 HET EDO B 402 4 HET EDO B 403 4 HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 EDO 5(C2 H6 O2) FORMUL 8 HOH *387(H2 O) HELIX 1 1 ASP A 5 PHE A 9 5 5 HELIX 2 2 GLU A 22 ALA A 40 1 19 HELIX 3 3 SER A 55 GLU A 60 1 6 HELIX 4 4 GLY A 71 GLU A 75 5 5 HELIX 5 5 GLY A 77 GLY A 87 1 11 HELIX 6 6 GLY A 94 ASP A 103 1 10 HELIX 7 7 ASP A 103 THR A 114 1 12 HELIX 8 8 ASP A 129 GLY A 142 1 14 HELIX 9 9 THR A 163 ASP A 165 5 3 HELIX 10 10 ALA A 166 ALA A 175 1 10 HELIX 11 11 PRO A 235 VAL A 252 1 18 HELIX 12 12 SER A 286 ILE A 295 1 10 HELIX 13 13 GLY A 298 LEU A 309 1 12 HELIX 14 14 ASP B 5 PHE B 9 5 5 HELIX 15 15 GLU B 22 ALA B 40 1 19 HELIX 16 16 LEU B 54 GLU B 60 1 7 HELIX 17 17 GLY B 71 GLU B 75 5 5 HELIX 18 18 GLY B 77 GLY B 87 1 11 HELIX 19 19 GLY B 94 LEU B 102 1 9 HELIX 20 20 ASP B 103 THR B 114 1 12 HELIX 21 21 ASP B 129 GLY B 142 1 14 HELIX 22 22 THR B 163 ASP B 165 5 3 HELIX 23 23 ALA B 166 GLU B 173 1 8 HELIX 24 24 PRO B 210 PHE B 214 5 5 HELIX 25 25 PRO B 235 VAL B 252 1 18 HELIX 26 26 SER B 286 ILE B 295 1 10 HELIX 27 27 GLY B 298 LEU B 309 1 12 SHEET 1 A 4 ASP A 43 PHE A 47 0 SHEET 2 A 4 LYS A 11 LEU A 15 1 N VAL A 14 O HIS A 45 SHEET 3 A 4 ARG A 64 ASN A 67 1 O PHE A 66 N ALA A 13 SHEET 4 A 4 ARG A 89 TYR A 90 1 O ARG A 89 N ALA A 65 SHEET 1 B 4 PHE A 121 MET A 125 0 SHEET 2 B 4 ILE A 180 LYS A 185 -1 O VAL A 183 N GLU A 122 SHEET 3 B 4 LEU A 145 PRO A 149 -1 N LYS A 148 O ILE A 182 SHEET 4 B 4 LEU A 159 VAL A 161 -1 O VAL A 161 N LEU A 145 SHEET 1 C 5 GLN A 227 LEU A 229 0 SHEET 2 C 5 ILE A 206 VAL A 209 -1 N VAL A 209 O GLN A 227 SHEET 3 C 5 GLY A 191 ALA A 198 -1 N GLU A 192 O ILE A 208 SHEET 4 C 5 TRP A 258 LEU A 265 -1 O GLY A 259 N ILE A 197 SHEET 5 C 5 ALA A 271 ASN A 277 -1 O LEU A 274 N ASP A 262 SHEET 1 D 4 ASP B 43 PHE B 47 0 SHEET 2 D 4 LYS B 11 LEU B 15 1 N VAL B 14 O HIS B 45 SHEET 3 D 4 ARG B 64 ASN B 67 1 O PHE B 66 N ALA B 13 SHEET 4 D 4 ARG B 89 TYR B 90 1 O ARG B 89 N ALA B 65 SHEET 1 E 4 PHE B 121 MET B 125 0 SHEET 2 E 4 ILE B 180 LYS B 185 -1 O VAL B 181 N VAL B 124 SHEET 3 E 4 LEU B 145 PRO B 149 -1 N PHE B 146 O GLU B 184 SHEET 4 E 4 LEU B 159 VAL B 161 -1 O VAL B 161 N LEU B 145 SHEET 1 F 5 GLN B 227 LEU B 229 0 SHEET 2 F 5 LEU B 205 VAL B 209 -1 N VAL B 209 O GLN B 227 SHEET 3 F 5 GLY B 191 ALA B 198 -1 N GLU B 192 O ILE B 208 SHEET 4 F 5 TRP B 258 LEU B 265 -1 O GLY B 259 N ILE B 197 SHEET 5 F 5 ALA B 271 ASN B 277 -1 O LEU B 274 N ASP B 262 CISPEP 1 LEU A 143 PRO A 144 0 -1.23 CISPEP 2 ILE A 230 PRO A 231 0 1.66 CISPEP 3 ARG B 126 GLY B 127 0 -17.07 CISPEP 4 LEU B 143 PRO B 144 0 -3.13 CISPEP 5 ILE B 230 PRO B 231 0 -1.68 SITE 1 AC1 3 TYR A 90 GLY A 92 HOH A 592 SITE 1 AC2 3 GLU A 75 ASN A 277 ALA A 279 SITE 1 AC3 7 ARG B 260 PRO B 280 GLY B 281 SER B 286 SITE 2 AC3 7 LEU B 287 PRO B 288 HOH B 588 SITE 1 AC4 2 PRO B 235 ALA B 236 SITE 1 AC5 1 ASP B 39 CRYST1 48.380 118.110 56.930 90.00 91.56 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020670 0.000000 0.000564 0.00000 SCALE2 0.000000 0.008467 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017572 0.00000