HEADER VIRAL PROTEIN 01-APR-12 4EGT TITLE CRYSTAL STRUCTURE OF MAJOR CAPSID PROTEIN P DOMAIN FROM RABBIT TITLE 2 HEMORRHAGIC DISEASE VIRUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: MAJOR CAPSID PROTEIN VP60; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: P (PROTRUDING) DOMAIN (UNP RESIDUES 228-579); COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RABBIT HEMORRHAGIC DISEASE VIRUS; SOURCE 3 ORGANISM_COMMON: RHDV; SOURCE 4 ORGANISM_TAXID: 11976; SOURCE 5 GENE: VP60; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: SF21; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PFASTEL-3G KEYWDS VIRAL PROTEIN, CAPSID PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR X.WANG,F.XU,K.ZHANG,Y.ZHAI,F.SUN REVDAT 3 13-SEP-23 4EGT 1 SEQADV REVDAT 2 06-FEB-13 4EGT 1 JRNL REVDAT 1 30-JAN-13 4EGT 0 JRNL AUTH X.WANG,F.XU,J.LIU,B.GAO,Y.LIU,Y.ZHAI,J.MA,K.ZHANG,T.S.BAKER, JRNL AUTH 2 K.SCHULTEN,D.ZHENG,H.PANG,F.SUN JRNL TITL ATOMIC MODEL OF RABBIT HEMORRHAGIC DISEASE VIRUS BY JRNL TITL 2 CRYO-ELECTRON MICROSCOPY AND CRYSTALLOGRAPHY. JRNL REF PLOS PATHOG. V. 9 03132 2013 JRNL REFN ISSN 1553-7366 JRNL PMID 23341770 JRNL DOI 10.1371/JOURNAL.PPAT.1003132 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0072 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.95 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 33925 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.232 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1789 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.06 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2397 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.56 REMARK 3 BIN R VALUE (WORKING SET) : 0.2290 REMARK 3 BIN FREE R VALUE SET COUNT : 126 REMARK 3 BIN FREE R VALUE : 0.2940 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4870 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 192 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.75 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.19000 REMARK 3 B22 (A**2) : -0.22000 REMARK 3 B33 (A**2) : 0.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.248 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.183 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.928 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5007 ; 0.008 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6872 ; 1.245 ; 1.937 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 650 ; 3.964 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 202 ;35.447 ;24.158 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 652 ;12.307 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;15.477 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 770 ; 0.089 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3936 ; 0.011 ; 0.022 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3261 ; 1.362 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5270 ; 2.327 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1746 ; 3.441 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1602 ; 5.338 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 3 U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 4EGT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-APR-12. REMARK 100 THE DEPOSITION ID IS D_1000071599. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-OCT-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.99985 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35882 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.08900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 29.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : 0.23100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 8.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2GH8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 30.53 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.77 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM ACETATE, 1.1 M SUCCINIC REMARK 280 ACID, 1.0% PEG2000 MME, PH 5.5, VAPOR DIFFUSION, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 21.96500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 67.79950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.07200 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 67.79950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.96500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 44.07200 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3680 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23810 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 223 REMARK 465 PRO A 224 REMARK 465 LEU A 225 REMARK 465 GLY A 226 REMARK 465 SER A 227 REMARK 465 ALA A 228 REMARK 465 PRO A 229 REMARK 465 SER A 230 REMARK 465 SER A 231 REMARK 465 LYS A 232 REMARK 465 THR A 233 REMARK 465 VAL A 234 REMARK 465 ASP A 235 REMARK 465 SER A 236 REMARK 465 ILE A 237 REMARK 465 ASP A 472 REMARK 465 VAL A 473 REMARK 465 ASN A 474 REMARK 465 ALA A 475 REMARK 465 ALA A 476 REMARK 465 ALA A 477 REMARK 465 GLY A 478 REMARK 465 SER A 479 REMARK 465 THR A 480 REMARK 465 ASN A 481 REMARK 465 GLY A 482 REMARK 465 GLY A 570 REMARK 465 GLY A 571 REMARK 465 THR A 572 REMARK 465 THR A 573 REMARK 465 ASN A 574 REMARK 465 GLY B 223 REMARK 465 PRO B 224 REMARK 465 LEU B 225 REMARK 465 GLY B 226 REMARK 465 SER B 227 REMARK 465 ALA B 228 REMARK 465 PRO B 229 REMARK 465 SER B 230 REMARK 465 SER B 231 REMARK 465 LYS B 232 REMARK 465 THR B 233 REMARK 465 VAL B 234 REMARK 465 ASP B 235 REMARK 465 SER B 236 REMARK 465 ILE B 237 REMARK 465 VAL B 434 REMARK 465 GLY B 478 REMARK 465 SER B 479 REMARK 465 THR B 480 REMARK 465 ASN B 481 REMARK 465 GLY B 482 REMARK 465 THR B 483 REMARK 465 GLY B 571 REMARK 465 THR B 572 REMARK 465 THR B 573 REMARK 465 ASN B 574 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL B 473 CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 686 O HOH B 668 2.06 REMARK 500 O GLN B 484 O HOH B 665 2.18 REMARK 500 O SER A 305 O HOH A 663 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 N GLY A 575 O HOH A 680 1655 2.17 REMARK 500 NH2 ARG A 559 NE2 GLN B 516 4555 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 431 -154.40 74.67 REMARK 500 SER A 432 -56.81 74.89 REMARK 500 GLU A 539 -125.59 58.25 REMARK 500 ALA B 293 -105.43 -108.35 REMARK 500 ALA B 431 88.62 -62.02 REMARK 500 GLU B 539 -126.00 58.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4EJR RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF S DOMAIN OF MAJOR CAPSID PROTEIN VP60 FROM REMARK 900 RABBIT HEMORRHAGIC DISEASE VIRUS REMARK 900 RELATED ID: 4J1P RELATED DB: PDB REMARK 900 ATOMIC MODEL OF RABBIT HEMORRHAGIC DISEASE VIRUS REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE AUTHORS STATE THAT G263R AND G539E ARE NATURAL SEQUENCE REMARK 999 VARIATIONS. DBREF 4EGT A 228 579 UNP Q3HNQ1 Q3HNQ1_RHDV 228 579 DBREF 4EGT B 228 579 UNP Q3HNQ1 Q3HNQ1_RHDV 228 579 SEQADV 4EGT GLY A 223 UNP Q3HNQ1 EXPRESSION TAG SEQADV 4EGT PRO A 224 UNP Q3HNQ1 EXPRESSION TAG SEQADV 4EGT LEU A 225 UNP Q3HNQ1 EXPRESSION TAG SEQADV 4EGT GLY A 226 UNP Q3HNQ1 EXPRESSION TAG SEQADV 4EGT SER A 227 UNP Q3HNQ1 EXPRESSION TAG SEQADV 4EGT ARG A 263 UNP Q3HNQ1 GLY 263 SEE REMARK 999 SEQADV 4EGT GLU A 539 UNP Q3HNQ1 GLY 539 SEE REMARK 999 SEQADV 4EGT GLY B 223 UNP Q3HNQ1 EXPRESSION TAG SEQADV 4EGT PRO B 224 UNP Q3HNQ1 EXPRESSION TAG SEQADV 4EGT LEU B 225 UNP Q3HNQ1 EXPRESSION TAG SEQADV 4EGT GLY B 226 UNP Q3HNQ1 EXPRESSION TAG SEQADV 4EGT SER B 227 UNP Q3HNQ1 EXPRESSION TAG SEQADV 4EGT ARG B 263 UNP Q3HNQ1 GLY 263 SEE REMARK 999 SEQADV 4EGT GLU B 539 UNP Q3HNQ1 GLY 539 SEE REMARK 999 SEQRES 1 A 357 GLY PRO LEU GLY SER ALA PRO SER SER LYS THR VAL ASP SEQRES 2 A 357 SER ILE SER PRO ALA GLY LEU LEU THR THR PRO VAL LEU SEQRES 3 A 357 THR GLY VAL GLY ASN ASP ASN ARG TRP ASN GLY GLN ILE SEQRES 4 A 357 VAL ARG LEU GLN PRO VAL PRO GLY GLY PHE SER THR CYS SEQRES 5 A 357 ASN ARG HIS TRP ASN LEU ASN GLY SER THR TYR GLY TRP SEQRES 6 A 357 SER SER PRO ARG PHE ALA ASP ILE ASP HIS ARG ARG GLY SEQRES 7 A 357 SER ALA SER TYR SER GLY ASN SER SER THR ASN VAL LEU SEQRES 8 A 357 GLN PHE TRP TYR ALA ASN ALA GLY SER ALA ILE ASP ASN SEQRES 9 A 357 PRO ILE SER GLN VAL ALA PRO ASP GLY PHE PRO ASP MET SEQRES 10 A 357 SER PHE VAL PRO PHE ASN SER PRO ASN ILE PRO THR ALA SEQRES 11 A 357 GLY TRP VAL GLY PHE GLY GLY ILE TRP ASN SER ASN ASN SEQRES 12 A 357 GLY ALA PRO ALA ALA THR THR VAL GLN ALA TYR GLU LEU SEQRES 13 A 357 GLY PHE ALA THR GLY ALA PRO ASN ASN LEU GLN PRO THR SEQRES 14 A 357 THR ASN THR SER GLY ALA GLN THR VAL ALA LYS SER ILE SEQRES 15 A 357 TYR ALA VAL VAL THR GLY THR ASN GLN ASN PRO THR GLY SEQRES 16 A 357 LEU PHE VAL MET ALA SER GLY VAL ILE SER THR PRO ASN SEQRES 17 A 357 ALA SER ALA VAL THR TYR THR PRO GLN PRO ASP ARG ILE SEQRES 18 A 357 VAL THR THR PRO GLY THR PRO ALA ALA ALA PRO VAL GLY SEQRES 19 A 357 LYS ASN THR PRO ILE MET PHE ALA SER VAL VAL ARG ARG SEQRES 20 A 357 THR GLY ASP VAL ASN ALA ALA ALA GLY SER THR ASN GLY SEQRES 21 A 357 THR GLN TYR GLY THR GLY SER GLN PRO LEU PRO VAL THR SEQRES 22 A 357 ILE GLY LEU SER LEU ASN ASN TYR SER SER ALA LEU MET SEQRES 23 A 357 PRO GLY GLN PHE PHE VAL TRP GLN LEU THR PHE ALA SER SEQRES 24 A 357 GLY PHE MET GLU ILE GLY LEU SER VAL ASP GLY TYR PHE SEQRES 25 A 357 TYR ALA GLY THR GLU ALA SER THR THR LEU ILE ASP LEU SEQRES 26 A 357 THR GLU LEU ILE ASP VAL ARG PRO VAL GLY PRO ARG PRO SEQRES 27 A 357 SER LYS SER THR LEU VAL PHE ASN LEU GLY GLY THR THR SEQRES 28 A 357 ASN GLY PHE SER TYR VAL SEQRES 1 B 357 GLY PRO LEU GLY SER ALA PRO SER SER LYS THR VAL ASP SEQRES 2 B 357 SER ILE SER PRO ALA GLY LEU LEU THR THR PRO VAL LEU SEQRES 3 B 357 THR GLY VAL GLY ASN ASP ASN ARG TRP ASN GLY GLN ILE SEQRES 4 B 357 VAL ARG LEU GLN PRO VAL PRO GLY GLY PHE SER THR CYS SEQRES 5 B 357 ASN ARG HIS TRP ASN LEU ASN GLY SER THR TYR GLY TRP SEQRES 6 B 357 SER SER PRO ARG PHE ALA ASP ILE ASP HIS ARG ARG GLY SEQRES 7 B 357 SER ALA SER TYR SER GLY ASN SER SER THR ASN VAL LEU SEQRES 8 B 357 GLN PHE TRP TYR ALA ASN ALA GLY SER ALA ILE ASP ASN SEQRES 9 B 357 PRO ILE SER GLN VAL ALA PRO ASP GLY PHE PRO ASP MET SEQRES 10 B 357 SER PHE VAL PRO PHE ASN SER PRO ASN ILE PRO THR ALA SEQRES 11 B 357 GLY TRP VAL GLY PHE GLY GLY ILE TRP ASN SER ASN ASN SEQRES 12 B 357 GLY ALA PRO ALA ALA THR THR VAL GLN ALA TYR GLU LEU SEQRES 13 B 357 GLY PHE ALA THR GLY ALA PRO ASN ASN LEU GLN PRO THR SEQRES 14 B 357 THR ASN THR SER GLY ALA GLN THR VAL ALA LYS SER ILE SEQRES 15 B 357 TYR ALA VAL VAL THR GLY THR ASN GLN ASN PRO THR GLY SEQRES 16 B 357 LEU PHE VAL MET ALA SER GLY VAL ILE SER THR PRO ASN SEQRES 17 B 357 ALA SER ALA VAL THR TYR THR PRO GLN PRO ASP ARG ILE SEQRES 18 B 357 VAL THR THR PRO GLY THR PRO ALA ALA ALA PRO VAL GLY SEQRES 19 B 357 LYS ASN THR PRO ILE MET PHE ALA SER VAL VAL ARG ARG SEQRES 20 B 357 THR GLY ASP VAL ASN ALA ALA ALA GLY SER THR ASN GLY SEQRES 21 B 357 THR GLN TYR GLY THR GLY SER GLN PRO LEU PRO VAL THR SEQRES 22 B 357 ILE GLY LEU SER LEU ASN ASN TYR SER SER ALA LEU MET SEQRES 23 B 357 PRO GLY GLN PHE PHE VAL TRP GLN LEU THR PHE ALA SER SEQRES 24 B 357 GLY PHE MET GLU ILE GLY LEU SER VAL ASP GLY TYR PHE SEQRES 25 B 357 TYR ALA GLY THR GLU ALA SER THR THR LEU ILE ASP LEU SEQRES 26 B 357 THR GLU LEU ILE ASP VAL ARG PRO VAL GLY PRO ARG PRO SEQRES 27 B 357 SER LYS SER THR LEU VAL PHE ASN LEU GLY GLY THR THR SEQRES 28 B 357 ASN GLY PHE SER TYR VAL FORMUL 3 HOH *192(H2 O) HELIX 1 1 SER A 238 LEU A 243 5 6 HELIX 2 2 THR A 244 THR A 249 1 6 HELIX 3 3 ALA A 369 VAL A 373 5 5 HELIX 4 4 GLN A 439 ILE A 443 5 5 HELIX 5 5 PRO A 491 ASN A 501 1 11 HELIX 6 6 PRO B 239 LEU B 243 5 5 HELIX 7 7 THR B 244 THR B 249 5 6 HELIX 8 8 ALA B 369 VAL B 373 5 5 HELIX 9 9 GLN B 439 ILE B 443 5 5 HELIX 10 10 PRO B 491 ASN B 501 1 11 SHEET 1 A 7 TYR A 436 THR A 437 0 SHEET 2 A 7 TYR A 485 GLY A 488 1 O THR A 487 N THR A 437 SHEET 3 A 7 THR A 459 VAL A 466 -1 N PHE A 463 O GLY A 488 SHEET 4 A 7 PHE A 534 ALA A 536 -1 O ALA A 536 N THR A 459 SHEET 5 A 7 PHE A 523 LEU A 528 -1 N GLY A 527 O TYR A 535 SHEET 6 A 7 GLN A 511 PHE A 519 -1 N LEU A 517 O MET A 524 SHEET 7 A 7 LEU A 550 PRO A 560 -1 O VAL A 556 N VAL A 514 SHEET 1 B 6 ILE A 545 ASP A 546 0 SHEET 2 B 6 GLN A 260 PRO A 266 -1 N LEU A 264 O ILE A 545 SHEET 3 B 6 THR A 459 VAL A 466 -1 O ALA A 464 N VAL A 262 SHEET 4 B 6 PHE A 534 ALA A 536 -1 O ALA A 536 N THR A 459 SHEET 5 B 6 PHE A 523 LEU A 528 -1 N GLY A 527 O TYR A 535 SHEET 6 B 6 PHE A 567 ASN A 568 -1 O ASN A 568 N PHE A 523 SHEET 1 C 2 PHE A 271 SER A 272 0 SHEET 2 C 2 ALA A 451 ALA A 452 -1 O ALA A 452 N PHE A 271 SHEET 1 D 5 GLN A 389 PRO A 390 0 SHEET 2 D 5 GLN A 374 THR A 382 -1 N THR A 382 O GLN A 389 SHEET 3 D 5 GLY A 353 TRP A 361 -1 N GLY A 356 O TYR A 376 SHEET 4 D 5 VAL A 425 SER A 427 -1 O VAL A 425 N VAL A 355 SHEET 5 D 5 ARG A 469 THR A 470 1 O THR A 470 N ILE A 426 SHEET 1 E 9 GLN A 389 PRO A 390 0 SHEET 2 E 9 GLN A 374 THR A 382 -1 N THR A 382 O GLN A 389 SHEET 3 E 9 GLN A 398 SER A 403 -1 O LYS A 402 N GLU A 377 SHEET 4 E 9 LEU A 313 ASN A 319 -1 N TRP A 316 O ALA A 401 SHEET 5 E 9 ILE A 295 SER A 305 -1 N SER A 301 O TYR A 317 SHEET 6 E 9 GLN A 413 VAL A 420 -1 O VAL A 420 N ILE A 295 SHEET 7 E 9 GLY A 353 TRP A 361 -1 N TRP A 361 O GLY A 417 SHEET 8 E 9 VAL A 425 SER A 427 -1 O VAL A 425 N VAL A 355 SHEET 9 E 9 ARG A 469 THR A 470 1 O THR A 470 N ILE A 426 SHEET 1 F 7 TYR B 436 THR B 437 0 SHEET 2 F 7 TYR B 485 GLY B 488 1 O THR B 487 N THR B 437 SHEET 3 F 7 THR B 459 VAL B 466 -1 N SER B 465 O GLY B 486 SHEET 4 F 7 PHE B 534 ALA B 536 -1 O ALA B 536 N THR B 459 SHEET 5 F 7 PHE B 523 LEU B 528 -1 N GLY B 527 O TYR B 535 SHEET 6 F 7 GLN B 511 PHE B 519 -1 N LEU B 517 O MET B 524 SHEET 7 F 7 LEU B 550 PRO B 560 -1 O VAL B 556 N VAL B 514 SHEET 1 G 6 ILE B 545 ASP B 546 0 SHEET 2 G 6 GLN B 260 PRO B 266 -1 N LEU B 264 O ILE B 545 SHEET 3 G 6 THR B 459 VAL B 466 -1 O MET B 462 N GLN B 265 SHEET 4 G 6 PHE B 534 ALA B 536 -1 O ALA B 536 N THR B 459 SHEET 5 G 6 PHE B 523 LEU B 528 -1 N GLY B 527 O TYR B 535 SHEET 6 G 6 PHE B 567 ASN B 568 -1 O ASN B 568 N PHE B 523 SHEET 1 H 2 PHE B 271 SER B 272 0 SHEET 2 H 2 ALA B 451 ALA B 452 -1 O ALA B 452 N PHE B 271 SHEET 1 I 5 GLN B 389 PRO B 390 0 SHEET 2 I 5 GLN B 374 THR B 382 -1 N THR B 382 O GLN B 389 SHEET 3 I 5 GLY B 353 TRP B 361 -1 N GLY B 356 O TYR B 376 SHEET 4 I 5 VAL B 425 SER B 427 -1 O VAL B 425 N VAL B 355 SHEET 5 I 5 ARG B 469 THR B 470 1 O THR B 470 N ILE B 426 SHEET 1 J 9 GLN B 389 PRO B 390 0 SHEET 2 J 9 GLN B 374 THR B 382 -1 N THR B 382 O GLN B 389 SHEET 3 J 9 GLN B 398 SER B 403 -1 O LYS B 402 N GLU B 377 SHEET 4 J 9 PHE B 315 ASN B 319 -1 N TRP B 316 O ALA B 401 SHEET 5 J 9 ASP B 294 SER B 303 -1 N SER B 301 O TYR B 317 SHEET 6 J 9 THR B 416 MET B 421 -1 O VAL B 420 N ILE B 295 SHEET 7 J 9 GLY B 353 TRP B 361 -1 N PHE B 357 O MET B 421 SHEET 8 J 9 VAL B 425 SER B 427 -1 O VAL B 425 N VAL B 355 SHEET 9 J 9 ARG B 469 THR B 470 1 O THR B 470 N ILE B 426 SHEET 1 K 2 THR B 310 VAL B 312 0 SHEET 2 K 2 VAL B 407 THR B 409 -1 O VAL B 407 N VAL B 312 CISPEP 1 SER A 346 PRO A 347 0 6.97 CISPEP 2 ALA A 384 PRO A 385 0 -2.95 CISPEP 3 ASN A 414 PRO A 415 0 -8.73 CISPEP 4 THR A 437 PRO A 438 0 -0.43 CISPEP 5 SER B 346 PRO B 347 0 6.03 CISPEP 6 ALA B 384 PRO B 385 0 -3.80 CISPEP 7 ASN B 414 PRO B 415 0 -7.76 CISPEP 8 THR B 437 PRO B 438 0 2.94 CRYST1 43.930 88.144 135.599 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022763 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011345 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007375 0.00000