HEADER TRANSFERASE 04-APR-12 4EHS TITLE CRYSTAL STRUCTURE OF HELICOBACTER PYLORI DNAG PRIMASE C TERMINAL TITLE 2 DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA PRIMASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: C-TERMINAL DOMAIN, UNP RESIDUES 413-559; COMPND 5 EC: 2.7.7.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HELICOBACTER PYLORI; SOURCE 3 ORGANISM_TAXID: 85962; SOURCE 4 STRAIN: 26995; SOURCE 5 GENE: DNAG, DNAG PRIMASE, HP_0012; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET21 KEYWDS TRANSFERASE, PRIMASE, HELICASE BINDING DOMAIN EXPDTA X-RAY DIFFRACTION AUTHOR S.A.ABDUL REHMAN,S.GOURINATH REVDAT 4 15-NOV-17 4EHS 1 REMARK REVDAT 3 12-MAR-14 4EHS 1 JRNL REVDAT 2 22-MAY-13 4EHS 1 LINK REVDAT 1 01-MAY-13 4EHS 0 JRNL AUTH S.A.ABDUL REHMAN,V.VERMA,M.MAZUMDER,S.K.DHAR,S.GOURINATH JRNL TITL CRYSTAL STRUCTURE AND MODE OF HELICASE BINDING OF THE JRNL TITL 2 C-TERMINAL DOMAIN OF PRIMASE FROM HELICOBACTER PYLORI JRNL REF J.BACTERIOL. V. 195 2826 2013 JRNL REFN ISSN 0021-9193 JRNL PMID 23585534 JRNL DOI 10.1128/JB.00091-13 REMARK 2 REMARK 2 RESOLUTION. 1.78 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REFMAC_5.5.0072 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.78 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.27 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 23200 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1250 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.78 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.82 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1469 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.28 REMARK 3 BIN R VALUE (WORKING SET) : 0.2630 REMARK 3 BIN FREE R VALUE SET COUNT : 80 REMARK 3 BIN FREE R VALUE : 0.3500 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1993 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 16 REMARK 3 SOLVENT ATOMS : 213 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.77 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.24000 REMARK 3 B22 (A**2) : 1.06000 REMARK 3 B33 (A**2) : -0.81000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.139 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.140 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.093 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.919 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.927 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2039 ; 0.019 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2724 ; 2.184 ; 2.053 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 244 ; 5.484 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 81 ;31.736 ;24.321 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 417 ;15.638 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;15.477 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 314 ; 0.126 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1420 ; 0.012 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1248 ; 1.467 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1998 ; 2.598 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 812 ; 4.318 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 753 ; 6.855 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 4EHS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 02-MAY-12. REMARK 100 THE DEPOSITION ID IS D_1000071634. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-MAY-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97860 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : BENT COLLIMATING MIRROR AND REMARK 200 TOROID REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24493 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.780 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : 0.06700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 42.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.78 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.81 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.2 REMARK 200 DATA REDUNDANCY IN SHELL : 4.90 REMARK 200 R MERGE FOR SHELL (I) : 0.33200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 32.48 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.82 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 5000 MME, NACL, PH 7.4, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.44150 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 41.21050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.72750 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 41.21050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.44150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 30.72750 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2630 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12900 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 413 REMARK 465 ARG A 414 REMARK 465 VAL A 415 REMARK 465 SER A 416 REMARK 465 PHE A 417 REMARK 465 GLN A 418 REMARK 465 PRO A 419 REMARK 465 PHE A 420 REMARK 465 TYR A 421 REMARK 465 PRO A 422 REMARK 465 LYS A 423 REMARK 465 THR A 424 REMARK 465 GLU A 425 REMARK 465 LYS A 426 REMARK 465 PRO A 427 REMARK 465 ASN A 428 REMARK 465 ARG A 429 REMARK 465 PRO A 430 REMARK 465 GLN A 431 REMARK 465 ARG A 432 REMARK 465 PHE A 433 REMARK 465 ALA A 434 REMARK 465 HIS A 435 REMARK 465 VAL A 436 REMARK 465 SER A 437 REMARK 465 HIS A 562 REMARK 465 HIS A 563 REMARK 465 HIS A 564 REMARK 465 HIS A 565 REMARK 465 HIS A 566 REMARK 465 HIS A 567 REMARK 465 GLU B 413 REMARK 465 ARG B 414 REMARK 465 VAL B 415 REMARK 465 SER B 416 REMARK 465 PHE B 417 REMARK 465 GLN B 418 REMARK 465 PRO B 419 REMARK 465 PHE B 420 REMARK 465 TYR B 421 REMARK 465 PRO B 422 REMARK 465 LYS B 423 REMARK 465 THR B 424 REMARK 465 GLU B 425 REMARK 465 LYS B 426 REMARK 465 PRO B 427 REMARK 465 ASN B 428 REMARK 465 ARG B 429 REMARK 465 PRO B 430 REMARK 465 GLN B 431 REMARK 465 ARG B 432 REMARK 465 PHE B 433 REMARK 465 ALA B 434 REMARK 465 HIS B 435 REMARK 465 VAL B 436 REMARK 465 SER B 437 REMARK 465 SER B 438 REMARK 465 GLU B 561 REMARK 465 HIS B 562 REMARK 465 HIS B 563 REMARK 465 HIS B 564 REMARK 465 HIS B 565 REMARK 465 HIS B 566 REMARK 465 HIS B 567 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS B 474 CG HIS B 474 CD2 0.055 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 545 NE - CZ - NH1 ANGL. DEV. = -3.9 DEGREES REMARK 500 LEU B 454 CA - CB - CG ANGL. DEV. = 15.3 DEGREES REMARK 500 ASP B 498 CB - CG - OD1 ANGL. DEV. = 6.7 DEGREES REMARK 500 ARG B 513 NE - CZ - NH1 ANGL. DEV. = 4.9 DEGREES REMARK 500 ARG B 513 NE - CZ - NH2 ANGL. DEV. = -4.5 DEGREES REMARK 500 ARG B 518 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG B 545 NE - CZ - NH1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ARG B 545 NE - CZ - NH2 ANGL. DEV. = -6.7 DEGREES REMARK 500 LEU B 560 CB - CG - CD2 ANGL. DEV. = -12.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 439 122.58 -39.23 REMARK 500 TYR A 466 -30.32 -132.43 REMARK 500 GLU A 485 39.11 39.49 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BME A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BME A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BME B 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BME B 602 DBREF 4EHS A 413 559 UNP P56064 PRIM_HELPY 413 559 DBREF 4EHS B 413 559 UNP P56064 PRIM_HELPY 413 559 SEQADV 4EHS LEU A 560 UNP P56064 EXPRESSION TAG SEQADV 4EHS GLU A 561 UNP P56064 EXPRESSION TAG SEQADV 4EHS HIS A 562 UNP P56064 EXPRESSION TAG SEQADV 4EHS HIS A 563 UNP P56064 EXPRESSION TAG SEQADV 4EHS HIS A 564 UNP P56064 EXPRESSION TAG SEQADV 4EHS HIS A 565 UNP P56064 EXPRESSION TAG SEQADV 4EHS HIS A 566 UNP P56064 EXPRESSION TAG SEQADV 4EHS HIS A 567 UNP P56064 EXPRESSION TAG SEQADV 4EHS LEU B 560 UNP P56064 EXPRESSION TAG SEQADV 4EHS GLU B 561 UNP P56064 EXPRESSION TAG SEQADV 4EHS HIS B 562 UNP P56064 EXPRESSION TAG SEQADV 4EHS HIS B 563 UNP P56064 EXPRESSION TAG SEQADV 4EHS HIS B 564 UNP P56064 EXPRESSION TAG SEQADV 4EHS HIS B 565 UNP P56064 EXPRESSION TAG SEQADV 4EHS HIS B 566 UNP P56064 EXPRESSION TAG SEQADV 4EHS HIS B 567 UNP P56064 EXPRESSION TAG SEQRES 1 A 155 GLU ARG VAL SER PHE GLN PRO PHE TYR PRO LYS THR GLU SEQRES 2 A 155 LYS PRO ASN ARG PRO GLN ARG PHE ALA HIS VAL SER SER SEQRES 3 A 155 ALA PRO SER LEU GLU PHE LEU GLU LYS LEU VAL ILE ARG SEQRES 4 A 155 TYR LEU LEU GLU ASP ARG SER LEU LEU ASP LEU ALA VAL SEQRES 5 A 155 GLY TYR ILE HIS SER GLY VAL PHE LEU HIS LYS LYS GLN SEQRES 6 A 155 GLU PHE ASP ALA LEU CYS GLN GLU LYS LEU ASP ASP PRO SEQRES 7 A 155 LYS LEU VAL ALA LEU LEU LEU ASP ALA ASN LEU PRO LEU SEQRES 8 A 155 LYS LYS GLY GLY PHE GLU LYS GLU LEU ARG LEU LEU ILE SEQRES 9 A 155 LEU ARG TYR PHE GLU ARG GLN LEU LYS GLU ILE PRO LYS SEQRES 10 A 155 SER SER LEU PRO PHE SER GLU LYS MSE ILE CYS LEU LYS SEQRES 11 A 155 LYS ALA ARG GLN ALA ILE MSE LYS LEU LYS GLN GLY GLU SEQRES 12 A 155 LEU VAL ALA ILE LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 155 GLU ARG VAL SER PHE GLN PRO PHE TYR PRO LYS THR GLU SEQRES 2 B 155 LYS PRO ASN ARG PRO GLN ARG PHE ALA HIS VAL SER SER SEQRES 3 B 155 ALA PRO SER LEU GLU PHE LEU GLU LYS LEU VAL ILE ARG SEQRES 4 B 155 TYR LEU LEU GLU ASP ARG SER LEU LEU ASP LEU ALA VAL SEQRES 5 B 155 GLY TYR ILE HIS SER GLY VAL PHE LEU HIS LYS LYS GLN SEQRES 6 B 155 GLU PHE ASP ALA LEU CYS GLN GLU LYS LEU ASP ASP PRO SEQRES 7 B 155 LYS LEU VAL ALA LEU LEU LEU ASP ALA ASN LEU PRO LEU SEQRES 8 B 155 LYS LYS GLY GLY PHE GLU LYS GLU LEU ARG LEU LEU ILE SEQRES 9 B 155 LEU ARG TYR PHE GLU ARG GLN LEU LYS GLU ILE PRO LYS SEQRES 10 B 155 SER SER LEU PRO PHE SER GLU LYS MSE ILE CYS LEU LYS SEQRES 11 B 155 LYS ALA ARG GLN ALA ILE MSE LYS LEU LYS GLN GLY GLU SEQRES 12 B 155 LEU VAL ALA ILE LEU GLU HIS HIS HIS HIS HIS HIS MODRES 4EHS MSE A 538 MET SELENOMETHIONINE MODRES 4EHS MSE A 549 MET SELENOMETHIONINE MODRES 4EHS MSE B 538 MET SELENOMETHIONINE MODRES 4EHS MSE B 549 MET SELENOMETHIONINE HET MSE A 538 8 HET MSE A 549 8 HET MSE B 538 8 HET MSE B 549 8 HET BME A 601 4 HET BME A 602 4 HET BME B 601 4 HET BME B 602 4 HETNAM MSE SELENOMETHIONINE HETNAM BME BETA-MERCAPTOETHANOL FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 3 BME 4(C2 H6 O S) FORMUL 7 HOH *213(H2 O) HELIX 1 1 SER A 441 ASP A 456 1 16 HELIX 2 2 ASP A 456 VAL A 464 1 9 HELIX 3 3 HIS A 468 PHE A 472 5 5 HELIX 4 4 LYS A 475 GLN A 484 1 10 HELIX 5 5 ASP A 489 ASP A 498 1 10 HELIX 6 6 GLY A 507 SER A 530 1 24 HELIX 7 7 PRO A 533 GLN A 553 1 21 HELIX 8 8 SER B 441 ASP B 456 1 16 HELIX 9 9 ARG B 457 VAL B 464 1 8 HELIX 10 10 HIS B 468 PHE B 472 5 5 HELIX 11 11 LYS B 475 GLN B 484 1 10 HELIX 12 12 ASP B 489 ASP B 498 1 10 HELIX 13 13 GLY B 507 ILE B 527 1 21 HELIX 14 14 PRO B 528 SER B 530 5 3 HELIX 15 15 PRO B 533 GLN B 553 1 21 LINK C LYS A 537 N MSE A 538 1555 1555 1.33 LINK C MSE A 538 N ILE A 539 1555 1555 1.32 LINK C ILE A 548 N MSE A 549 1555 1555 1.33 LINK C MSE A 549 N LYS A 550 1555 1555 1.33 LINK C LYS B 537 N MSE B 538 1555 1555 1.35 LINK C MSE B 538 N ILE B 539 1555 1555 1.34 LINK C ILE B 548 N MSE B 549 1555 1555 1.33 LINK C MSE B 549 N LYS B 550 1555 1555 1.32 LINK SG CYS A 483 S2 BME A 601 1555 1555 2.00 LINK SG CYS B 483 S2 BME B 601 1555 1555 1.98 LINK SG CYS A 540 S2 BME A 602 1555 1555 2.03 LINK SG CYS B 540 S2 BME B 602 1555 1555 2.03 SITE 1 AC1 1 CYS A 483 SITE 1 AC2 4 ILE A 539 CYS A 540 LYS A 543 VAL B 464 SITE 1 AC3 3 GLU A 536 VAL B 464 CYS B 483 SITE 1 AC4 1 CYS B 540 CRYST1 48.883 61.455 82.421 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020457 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016272 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012133 0.00000