data_4EJD # _entry.id 4EJD # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4EJD RCSB RCSB071691 WWPDB D_1000071691 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 4EJ8 . unspecified PDB 4EJK . unspecified PDB 4EJL . unspecified # _pdbx_database_status.entry_id 4EJD _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2012-04-06 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Tiefenbrunn, T.' 1 'Stout, C.D.' 2 # _citation.id primary _citation.title 'Small molecule regulation of protein conformation by binding in the Flap of HIV protease.' _citation.journal_abbrev 'Acs Chem.Biol.' _citation.journal_volume 8 _citation.page_first 1223 _citation.page_last 1231 _citation.year 2013 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 1554-8929 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 23540839 _citation.pdbx_database_id_DOI 10.1021/cb300611p # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Tiefenbrunn, T.' 1 primary 'Forli, S.' 2 primary 'Baksh, M.M.' 3 primary 'Chang, M.W.' 4 primary 'Happer, M.' 5 primary 'Lin, Y.C.' 6 primary 'Perryman, A.L.' 7 primary 'Rhee, J.K.' 8 primary 'Torbett, B.E.' 9 primary 'Olson, A.J.' 10 primary 'Elder, J.H.' 11 primary 'Finn, M.G.' 12 primary 'Stout, C.D.' 13 # _cell.length_a 28.820 _cell.length_b 65.630 _cell.length_c 92.930 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.entry_id 4EJD _cell.pdbx_unique_axis ? _cell.Z_PDB 8 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.entry_id 4EJD _symmetry.Int_Tables_number 19 _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man Protease 10831.833 2 3.4.23.16 ? 'UNP residues 490-588' ? 2 polymer syn pepstatin 685.891 1 ? ? ? ? 3 non-polymer syn BETA-MERCAPTOETHANOL 78.133 3 ? ? ? ? 4 non-polymer syn '1H-indole-6-carboxylic acid' 161.157 1 ? ? ? ? 5 non-polymer syn GLYCEROL 92.094 1 ? ? ? ? 6 water nat water 18.015 165 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'PR, Retropepsin' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;PQITLWKRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPT PVNIIGRNLLTQIGCTLNF ; ;PQITLWKRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPT PVNIIGRNLLTQIGCTLNF ; A,B ? 2 'polypeptide(L)' no yes '(IVA)VV(STA)A(STA)' XVVXAX C ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 PRO n 1 2 GLN n 1 3 ILE n 1 4 THR n 1 5 LEU n 1 6 TRP n 1 7 LYS n 1 8 ARG n 1 9 PRO n 1 10 LEU n 1 11 VAL n 1 12 THR n 1 13 ILE n 1 14 LYS n 1 15 ILE n 1 16 GLY n 1 17 GLY n 1 18 GLN n 1 19 LEU n 1 20 LYS n 1 21 GLU n 1 22 ALA n 1 23 LEU n 1 24 LEU n 1 25 ASP n 1 26 THR n 1 27 GLY n 1 28 ALA n 1 29 ASP n 1 30 ASP n 1 31 THR n 1 32 VAL n 1 33 LEU n 1 34 GLU n 1 35 GLU n 1 36 MET n 1 37 ASN n 1 38 LEU n 1 39 PRO n 1 40 GLY n 1 41 ARG n 1 42 TRP n 1 43 LYS n 1 44 PRO n 1 45 LYS n 1 46 MET n 1 47 ILE n 1 48 GLY n 1 49 GLY n 1 50 ILE n 1 51 GLY n 1 52 GLY n 1 53 PHE n 1 54 ILE n 1 55 LYS n 1 56 VAL n 1 57 ARG n 1 58 GLN n 1 59 TYR n 1 60 ASP n 1 61 GLN n 1 62 ILE n 1 63 LEU n 1 64 ILE n 1 65 GLU n 1 66 ILE n 1 67 CYS n 1 68 GLY n 1 69 HIS n 1 70 LYS n 1 71 ALA n 1 72 ILE n 1 73 GLY n 1 74 THR n 1 75 VAL n 1 76 LEU n 1 77 VAL n 1 78 GLY n 1 79 PRO n 1 80 THR n 1 81 PRO n 1 82 VAL n 1 83 ASN n 1 84 ILE n 1 85 ILE n 1 86 GLY n 1 87 ARG n 1 88 ASN n 1 89 LEU n 1 90 LEU n 1 91 THR n 1 92 GLN n 1 93 ILE n 1 94 GLY n 1 95 CYS n 1 96 THR n 1 97 LEU n 1 98 ASN n 1 99 PHE n 2 1 IVA n 2 2 VAL n 2 3 VAL n 2 4 STA n 2 5 ALA n 2 6 STA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene pol _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain R8 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Human immunodeficiency virus 1' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 11676 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'Rosetta2(DE3) pLysS' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name 'pET-21a(+)' _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'Streptomyces argenteolus subsp. toyonakensis' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 285516 _pdbx_entity_src_syn.details ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP POL_HV1Z2 P12499 1 ;PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMNLPGKWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPT PVNIIGRNLLTQIGCTLNF ; 490 ? 2 PDB 4EJD 4EJD 2 '(IVA)VV(STA)A(STA)' 1 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4EJD A 1 ? 99 ? P12499 490 ? 588 ? 1 99 2 1 4EJD B 1 ? 99 ? P12499 490 ? 588 ? 1 99 3 2 4EJD C 1 ? 6 ? 4EJD 1 ? 6 ? 1 6 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4EJD LYS A 7 ? UNP P12499 GLN 496 CONFLICT 7 1 1 4EJD ARG A 41 ? UNP P12499 LYS 530 CONFLICT 41 2 2 4EJD LYS B 7 ? UNP P12499 GLN 496 CONFLICT 7 3 2 4EJD ARG B 41 ? UNP P12499 LYS 530 CONFLICT 41 4 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 1F1 non-polymer . '1H-indole-6-carboxylic acid' ? 'C9 H7 N O2' 161.157 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 BME non-polymer . BETA-MERCAPTOETHANOL ? 'C2 H6 O S' 78.133 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 IVA non-polymer . 'ISOVALERIC ACID' ? 'C5 H10 O2' 102.132 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 STA peptide-like . STATINE ? 'C8 H17 N O3' 175.225 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 4EJD _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 1.97 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 37.44 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.temp 298 _exptl_crystal_grow.pdbx_details ;0.2 M potassium bromide, 0.2 M potassium thiocyanate, 3% PGA-LM, 3% MPD, 10% DMSO, 0.1 M sodium cacodylate, pH 6.5, VAPOR DIFFUSION, temperature 298K ; _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.pdbx_collection_date 2010-06-11 _diffrn_detector.details 'Rh coated flat mirror' # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator 'Side scattering I-beam bent single crystal, asymmetric cut 4.9650 degrees' _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.979 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SSRL BEAMLINE BL7-1' _diffrn_source.pdbx_wavelength_list 0.979 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site SSRL _diffrn_source.pdbx_synchrotron_beamline BL7-1 # _reflns.entry_id 4EJD _reflns.d_resolution_high 1.103 _reflns.d_resolution_low 92.930 _reflns.number_all 70609 _reflns.number_obs 70609 _reflns.pdbx_netI_over_sigmaI 8.3 _reflns.pdbx_Rsym_value 0.089 _reflns.pdbx_redundancy 3.4 _reflns.percent_possible_obs 98.3 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.pdbx_Rmerge_I_obs ? _reflns.B_iso_Wilson_estimate ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.103 1.160 ? 34370 ? 0.483 1.5 0.483 ? 3.3 ? 10342 99.9 1 1 1.160 1.230 ? 33166 ? 0.335 2.2 0.335 ? 3.4 ? 9802 99.9 2 1 1.230 1.320 ? 31661 ? 0.262 2.8 0.262 ? 3.4 ? 9277 99.9 3 1 1.320 1.420 ? 29480 ? 0.194 3.8 0.194 ? 3.4 ? 8587 99.8 4 1 1.420 1.560 ? 27331 ? 0.127 5.6 0.127 ? 3.4 ? 7945 99.9 5 1 1.560 1.740 ? 24667 ? 0.079 8.9 0.079 ? 3.4 ? 7235 99.8 6 1 1.740 2.010 ? 21652 ? 0.068 8.1 0.068 ? 3.4 ? 6378 99.6 7 1 2.010 2.470 ? 17123 ? 0.077 7.8 0.077 ? 3.2 ? 5428 99.1 8 1 2.470 3.490 ? 14361 ? 0.043 14.2 0.043 ? 3.5 ? 4155 96.6 9 1 3.490 21.901 ? 4093 ? 0.052 10.8 0.052 ? 2.8 ? 1460 57.9 10 1 # _refine.entry_id 4EJD _refine.ls_d_res_high 1.103 _refine.ls_d_res_low 18.96 _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 97.77 _refine.ls_number_reflns_obs 70371 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : REFINED INDIVIDUALLY ; _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1475 _refine.ls_R_factor_R_work 0.1459 _refine.ls_wR_factor_R_work 0.1467 _refine.ls_R_factor_R_free 0.1762 _refine.ls_wR_factor_R_free 0.1778 _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 3543 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 14.7297 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] -0.0200 _refine.aniso_B[2][2] -0.0100 _refine.aniso_B[3][3] 0.0200 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] -0.0000 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9670 _refine.correlation_coeff_Fo_to_Fc_free 0.9540 _refine.overall_SU_R_Cruickshank_DPI 0.0319 _refine.overall_SU_R_free 0.0333 _refine.pdbx_overall_ESU_R 0.0320 _refine.pdbx_overall_ESU_R_Free 0.0330 _refine.overall_SU_ML 0.0210 _refine.overall_SU_B 0.9340 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.2000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set 0.9194 _refine.B_iso_max 95.580 _refine.B_iso_min 4.790 _refine.pdbx_overall_phase_error ? _refine.occupancy_max 1.000 _refine.occupancy_min 0.160 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1562 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 30 _refine_hist.number_atoms_solvent 165 _refine_hist.number_atoms_total 1757 _refine_hist.d_res_high 1.103 _refine_hist.d_res_low 18.96 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 1728 0.010 0.019 ? ? 'X-RAY DIFFRACTION' r_bond_other_d 1194 0.000 0.020 ? ? 'X-RAY DIFFRACTION' r_angle_refined_deg 2332 1.442 2.017 ? ? 'X-RAY DIFFRACTION' r_angle_other_deg 2972 2.064 3.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 215 6.865 5.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 62 40.956 24.516 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 329 14.202 15.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 11 11.903 15.000 ? ? 'X-RAY DIFFRACTION' r_chiral_restr 276 0.139 0.200 ? ? 'X-RAY DIFFRACTION' r_gen_planes_refined 1834 0.015 0.021 ? ? 'X-RAY DIFFRACTION' r_gen_planes_other 304 0.002 0.020 ? ? 'X-RAY DIFFRACTION' r_rigid_bond_restr 2915 10.330 3.000 ? ? 'X-RAY DIFFRACTION' r_sphericity_free 66 35.424 5.000 ? ? 'X-RAY DIFFRACTION' r_sphericity_bonded 2987 10.978 5.000 ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.d_res_high 1.103 _refine_ls_shell.d_res_low 1.132 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 99.49 _refine_ls_shell.number_reflns_R_work 4652 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.2620 _refine_ls_shell.R_factor_R_free 0.2780 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 216 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 4868 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 4EJD _struct.title 'HIV Protease (PR) dimer in closed form with pepstatin in active site and fragment 1F1 in the outside/top of flap' _struct.pdbx_descriptor 'Protease (E.C.3.4.23.16), pepstatin' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4EJD _struct_keywords.text 'apo protease, allostery, fragment binding, HYDROLASE-HYDROLASE INHIBITOR complex' _struct_keywords.pdbx_keywords 'HYDROLASE/HYDROLASE INHIBITOR' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 4 ? F N N 5 ? G N N 3 ? H N N 3 ? I N N 6 ? J N N 6 ? K N N 6 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 86 ? THR A 91 ? GLY A 86 THR A 91 1 ? 6 HELX_P HELX_P2 2 GLN A 92 ? GLY A 94 ? GLN A 92 GLY A 94 5 ? 3 HELX_P HELX_P3 3 GLY B 86 ? THR B 91 ? GLY B 86 THR B 91 1 ? 6 HELX_P HELX_P4 4 GLN B 92 ? GLY B 94 ? GLN B 92 GLY B 94 5 ? 3 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? C IVA 1 C ? ? ? 1_555 C VAL 2 N ? ? C IVA 1 C VAL 2 1_555 ? ? ? ? ? ? ? 1.339 sing covale2 covale ? ? C VAL 3 C ? ? ? 1_555 C STA 4 N ? ? C VAL 3 C STA 4 1_555 ? ? ? ? ? ? ? 1.416 sing covale3 covale ? ? C STA 4 C ? ? ? 1_555 C ALA 5 N ? ? C STA 4 C ALA 5 1_555 ? ? ? ? ? ? ? 1.317 sing covale4 covale ? ? C ALA 5 C ? ? ? 1_555 C STA 6 N ? ? C ALA 5 C STA 6 1_555 ? ? ? ? ? ? ? 1.179 sing # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 9 ? C ? 8 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? parallel B 5 6 ? anti-parallel B 6 7 ? parallel B 7 8 ? anti-parallel B 8 9 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? parallel C 4 5 ? anti-parallel C 5 6 ? parallel C 6 7 ? anti-parallel C 7 8 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLN A 2 ? ILE A 3 ? GLN A 2 ILE A 3 A 2 THR B 96 ? ASN B 98 ? THR B 96 ASN B 98 A 3 THR A 96 ? ASN A 98 ? THR A 96 ASN A 98 A 4 GLN B 2 ? ILE B 3 ? GLN B 2 ILE B 3 B 1 VAL C 2 ? VAL C 3 ? VAL C 2 VAL C 3 B 2 LYS A 43 ? GLY A 49 ? LYS A 43 GLY A 49 B 3 GLY A 52 ? ILE A 66 ? GLY A 52 ILE A 66 B 4 HIS A 69 ? VAL A 77 ? HIS A 69 VAL A 77 B 5 VAL A 32 ? LEU A 33 ? VAL A 32 LEU A 33 B 6 ILE A 84 ? ILE A 85 ? ILE A 84 ILE A 85 B 7 GLN A 18 ? LEU A 24 ? GLN A 18 LEU A 24 B 8 LEU A 10 ? ILE A 15 ? LEU A 10 ILE A 15 B 9 GLY A 52 ? ILE A 66 ? GLY A 52 ILE A 66 C 1 LYS B 43 ? GLY B 49 ? LYS B 43 GLY B 49 C 2 GLY B 52 ? ILE B 66 ? GLY B 52 ILE B 66 C 3 HIS B 69 ? VAL B 77 ? HIS B 69 VAL B 77 C 4 VAL B 32 ? LEU B 33 ? VAL B 32 LEU B 33 C 5 ILE B 84 ? ILE B 85 ? ILE B 84 ILE B 85 C 6 GLN B 18 ? LEU B 24 ? GLN B 18 LEU B 24 C 7 LEU B 10 ? ILE B 15 ? LEU B 10 ILE B 15 C 8 GLY B 52 ? ILE B 66 ? GLY B 52 ILE B 66 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ILE A 3 ? N ILE A 3 O LEU B 97 ? O LEU B 97 A 2 3 O ASN B 98 ? O ASN B 98 N THR A 96 ? N THR A 96 A 3 4 N LEU A 97 ? N LEU A 97 O ILE B 3 ? O ILE B 3 B 1 2 O VAL C 3 ? O VAL C 3 N GLY A 48 ? N GLY A 48 B 2 3 N LYS A 43 ? N LYS A 43 O GLN A 58 ? O GLN A 58 B 3 4 N ILE A 64 ? N ILE A 64 O ALA A 71 ? O ALA A 71 B 4 5 O LEU A 76 ? O LEU A 76 N LEU A 33 ? N LEU A 33 B 5 6 N VAL A 32 ? N VAL A 32 O ILE A 84 ? O ILE A 84 B 6 7 O ILE A 85 ? O ILE A 85 N LEU A 23 ? N LEU A 23 B 7 8 O LYS A 20 ? O LYS A 20 N ILE A 13 ? N ILE A 13 B 8 9 N LYS A 14 ? N LYS A 14 O GLU A 65 ? O GLU A 65 C 1 2 N LYS B 43 ? N LYS B 43 O GLN B 58 ? O GLN B 58 C 2 3 N ARG B 57 ? N ARG B 57 O VAL B 77 ? O VAL B 77 C 3 4 O LEU B 76 ? O LEU B 76 N LEU B 33 ? N LEU B 33 C 4 5 N VAL B 32 ? N VAL B 32 O ILE B 84 ? O ILE B 84 C 5 6 O ILE B 85 ? O ILE B 85 N LEU B 23 ? N LEU B 23 C 6 7 O LYS B 20 ? O LYS B 20 N ILE B 13 ? N ILE B 13 C 7 8 N LYS B 14 ? N LYS B 14 O GLU B 65 ? O GLU B 65 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 7 'BINDING SITE FOR RESIDUE BME A 101' AC2 Software ? ? ? ? 11 'BINDING SITE FOR RESIDUE 1F1 A 102' AC3 Software ? ? ? ? 10 'BINDING SITE FOR RESIDUE GOL B 101' AC4 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE BME B 102' AC5 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE BME B 103' AC6 Software ? ? ? ? 22 'BINDING SITE FOR CHAIN C OF PEPSTATIN' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 7 LEU A 10 ? LEU A 10 . ? 1_555 ? 2 AC1 7 VAL A 11 ? VAL A 11 . ? 1_555 ? 3 AC1 7 THR A 12 ? THR A 12 . ? 1_555 ? 4 AC1 7 CYS A 67 ? CYS A 67 . ? 1_555 ? 5 AC1 7 HOH I . ? HOH A 207 . ? 1_555 ? 6 AC1 7 LYS B 7 ? LYS B 7 . ? 1_455 ? 7 AC1 7 HOH J . ? HOH B 246 . ? 1_455 ? 8 AC2 11 PRO A 44 ? PRO A 44 . ? 1_555 ? 9 AC2 11 LYS A 45 ? LYS A 45 . ? 1_555 ? 10 AC2 11 LYS A 55 ? LYS A 55 . ? 1_555 ? 11 AC2 11 VAL A 56 ? VAL A 56 . ? 1_555 ? 12 AC2 11 ARG A 57 ? ARG A 57 . ? 1_555 ? 13 AC2 11 THR A 91 ? THR A 91 . ? 3_655 ? 14 AC2 11 GLN A 92 ? GLN A 92 . ? 3_655 ? 15 AC2 11 GLY A 94 ? GLY A 94 . ? 3_655 ? 16 AC2 11 HOH I . ? HOH A 209 . ? 3_655 ? 17 AC2 11 HOH I . ? HOH A 278 . ? 1_555 ? 18 AC2 11 HOH J . ? HOH B 233 . ? 3_655 ? 19 AC3 10 GLY A 49 ? GLY A 49 . ? 4_455 ? 20 AC3 10 GLY A 51 ? GLY A 51 . ? 4_455 ? 21 AC3 10 GLY A 52 ? GLY A 52 . ? 4_455 ? 22 AC3 10 PRO B 44 ? PRO B 44 . ? 1_555 ? 23 AC3 10 MET B 46 ? MET B 46 . ? 1_555 ? 24 AC3 10 LYS B 55 ? LYS B 55 . ? 1_555 ? 25 AC3 10 PRO B 81 ? PRO B 81 . ? 4_455 ? 26 AC3 10 HOH J . ? HOH B 225 . ? 1_555 ? 27 AC3 10 HOH J . ? HOH B 251 . ? 4_455 ? 28 AC3 10 HOH K . ? HOH C 104 . ? 4_455 ? 29 AC4 5 LYS A 7 ? LYS A 7 . ? 1_655 ? 30 AC4 5 HOH I . ? HOH A 227 . ? 1_655 ? 31 AC4 5 VAL B 11 ? VAL B 11 . ? 1_555 ? 32 AC4 5 CYS B 67 ? CYS B 67 . ? 1_555 ? 33 AC4 5 BME H . ? BME B 103 . ? 1_555 ? 34 AC5 5 LYS A 7 ? LYS A 7 . ? 1_655 ? 35 AC5 5 HOH I . ? HOH A 227 . ? 1_655 ? 36 AC5 5 THR B 12 ? THR B 12 . ? 1_555 ? 37 AC5 5 CYS B 67 ? CYS B 67 . ? 1_555 ? 38 AC5 5 BME G . ? BME B 102 . ? 1_555 ? 39 AC6 22 ARG A 8 ? ARG A 8 . ? 1_555 ? 40 AC6 22 ASP A 25 ? ASP A 25 . ? 1_555 ? 41 AC6 22 GLY A 27 ? GLY A 27 . ? 1_555 ? 42 AC6 22 ALA A 28 ? ALA A 28 . ? 1_555 ? 43 AC6 22 ASP A 29 ? ASP A 29 . ? 1_555 ? 44 AC6 22 ASP A 30 ? ASP A 30 . ? 1_555 ? 45 AC6 22 LYS A 45 ? LYS A 45 . ? 1_555 ? 46 AC6 22 ILE A 47 ? ILE A 47 . ? 1_555 ? 47 AC6 22 GLY A 48 ? GLY A 48 . ? 1_555 ? 48 AC6 22 GLY A 49 ? GLY A 49 . ? 1_555 ? 49 AC6 22 ILE A 84 ? ILE A 84 . ? 1_555 ? 50 AC6 22 ARG B 8 ? ARG B 8 . ? 1_555 ? 51 AC6 22 ASP B 25 ? ASP B 25 . ? 1_555 ? 52 AC6 22 GLY B 27 ? GLY B 27 . ? 1_555 ? 53 AC6 22 ALA B 28 ? ALA B 28 . ? 1_555 ? 54 AC6 22 ASP B 29 ? ASP B 29 . ? 1_555 ? 55 AC6 22 ASP B 30 ? ASP B 30 . ? 1_555 ? 56 AC6 22 GLY B 48 ? GLY B 48 . ? 1_555 ? 57 AC6 22 HOH J . ? HOH B 231 . ? 1_555 ? 58 AC6 22 HOH K . ? HOH C 102 . ? 1_555 ? 59 AC6 22 HOH K . ? HOH C 103 . ? 1_555 ? 60 AC6 22 HOH K . ? HOH C 105 . ? 1_555 ? # _database_PDB_matrix.entry_id 4EJD _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.000000 _database_PDB_matrix.origx_vector[2] 0.000000 _database_PDB_matrix.origx_vector[3] 0.000000 # _atom_sites.entry_id 4EJD _atom_sites.fract_transf_matrix[1][1] 0.034698 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015237 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010761 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O S # loop_ _database_PDB_caveat.text 'RESIDUES C ALA 5 AND C STA 6 ARE NOT PROPERLY LINKED.' # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 PRO 1 1 1 PRO PRO A . n A 1 2 GLN 2 2 2 GLN GLN A . n A 1 3 ILE 3 3 3 ILE ILE A . n A 1 4 THR 4 4 4 THR THR A . n A 1 5 LEU 5 5 5 LEU LEU A . n A 1 6 TRP 6 6 6 TRP TRP A . n A 1 7 LYS 7 7 7 LYS LYS A . n A 1 8 ARG 8 8 8 ARG ARG A . n A 1 9 PRO 9 9 9 PRO PRO A . n A 1 10 LEU 10 10 10 LEU LEU A . n A 1 11 VAL 11 11 11 VAL VAL A . n A 1 12 THR 12 12 12 THR THR A . n A 1 13 ILE 13 13 13 ILE ILE A . n A 1 14 LYS 14 14 14 LYS LYS A . n A 1 15 ILE 15 15 15 ILE ILE A . n A 1 16 GLY 16 16 16 GLY GLY A . n A 1 17 GLY 17 17 17 GLY GLY A . n A 1 18 GLN 18 18 18 GLN GLN A . n A 1 19 LEU 19 19 19 LEU LEU A . n A 1 20 LYS 20 20 20 LYS LYS A . n A 1 21 GLU 21 21 21 GLU GLU A . n A 1 22 ALA 22 22 22 ALA ALA A . n A 1 23 LEU 23 23 23 LEU LEU A . n A 1 24 LEU 24 24 24 LEU LEU A . n A 1 25 ASP 25 25 25 ASP ASP A . n A 1 26 THR 26 26 26 THR THR A . n A 1 27 GLY 27 27 27 GLY GLY A . n A 1 28 ALA 28 28 28 ALA ALA A . n A 1 29 ASP 29 29 29 ASP ASP A . n A 1 30 ASP 30 30 30 ASP ASP A . n A 1 31 THR 31 31 31 THR THR A . n A 1 32 VAL 32 32 32 VAL VAL A . n A 1 33 LEU 33 33 33 LEU LEU A . n A 1 34 GLU 34 34 34 GLU GLU A . n A 1 35 GLU 35 35 35 GLU GLU A . n A 1 36 MET 36 36 36 MET MET A . n A 1 37 ASN 37 37 37 ASN ASN A . n A 1 38 LEU 38 38 38 LEU LEU A . n A 1 39 PRO 39 39 39 PRO PRO A . n A 1 40 GLY 40 40 40 GLY GLY A . n A 1 41 ARG 41 41 41 ARG ARG A . n A 1 42 TRP 42 42 42 TRP TRP A . n A 1 43 LYS 43 43 43 LYS LYS A . n A 1 44 PRO 44 44 44 PRO PRO A . n A 1 45 LYS 45 45 45 LYS LYS A . n A 1 46 MET 46 46 46 MET MET A . n A 1 47 ILE 47 47 47 ILE ILE A . n A 1 48 GLY 48 48 48 GLY GLY A . n A 1 49 GLY 49 49 49 GLY GLY A . n A 1 50 ILE 50 50 50 ILE ILE A . n A 1 51 GLY 51 51 51 GLY GLY A . n A 1 52 GLY 52 52 52 GLY GLY A . n A 1 53 PHE 53 53 53 PHE PHE A . n A 1 54 ILE 54 54 54 ILE ILE A . n A 1 55 LYS 55 55 55 LYS LYS A . n A 1 56 VAL 56 56 56 VAL VAL A . n A 1 57 ARG 57 57 57 ARG ARG A . n A 1 58 GLN 58 58 58 GLN GLN A . n A 1 59 TYR 59 59 59 TYR TYR A . n A 1 60 ASP 60 60 60 ASP ASP A . n A 1 61 GLN 61 61 61 GLN GLN A . n A 1 62 ILE 62 62 62 ILE ILE A . n A 1 63 LEU 63 63 63 LEU LEU A . n A 1 64 ILE 64 64 64 ILE ILE A . n A 1 65 GLU 65 65 65 GLU GLU A . n A 1 66 ILE 66 66 66 ILE ILE A . n A 1 67 CYS 67 67 67 CYS CYS A . n A 1 68 GLY 68 68 68 GLY GLY A . n A 1 69 HIS 69 69 69 HIS HIS A . n A 1 70 LYS 70 70 70 LYS LYS A . n A 1 71 ALA 71 71 71 ALA ALA A . n A 1 72 ILE 72 72 72 ILE ILE A . n A 1 73 GLY 73 73 73 GLY GLY A . n A 1 74 THR 74 74 74 THR THR A . n A 1 75 VAL 75 75 75 VAL VAL A . n A 1 76 LEU 76 76 76 LEU LEU A . n A 1 77 VAL 77 77 77 VAL VAL A . n A 1 78 GLY 78 78 78 GLY GLY A . n A 1 79 PRO 79 79 79 PRO PRO A . n A 1 80 THR 80 80 80 THR THR A . n A 1 81 PRO 81 81 81 PRO PRO A . n A 1 82 VAL 82 82 82 VAL VAL A . n A 1 83 ASN 83 83 83 ASN ASN A . n A 1 84 ILE 84 84 84 ILE ILE A . n A 1 85 ILE 85 85 85 ILE ILE A . n A 1 86 GLY 86 86 86 GLY GLY A . n A 1 87 ARG 87 87 87 ARG ARG A . n A 1 88 ASN 88 88 88 ASN ASN A . n A 1 89 LEU 89 89 89 LEU LEU A . n A 1 90 LEU 90 90 90 LEU LEU A . n A 1 91 THR 91 91 91 THR THR A . n A 1 92 GLN 92 92 92 GLN GLN A . n A 1 93 ILE 93 93 93 ILE ILE A . n A 1 94 GLY 94 94 94 GLY GLY A . n A 1 95 CYS 95 95 95 CYS CYS A . n A 1 96 THR 96 96 96 THR THR A . n A 1 97 LEU 97 97 97 LEU LEU A . n A 1 98 ASN 98 98 98 ASN ASN A . n A 1 99 PHE 99 99 99 PHE PHE A . n B 1 1 PRO 1 1 1 PRO PRO B . n B 1 2 GLN 2 2 2 GLN GLN B . n B 1 3 ILE 3 3 3 ILE ILE B . n B 1 4 THR 4 4 4 THR THR B . n B 1 5 LEU 5 5 5 LEU LEU B . n B 1 6 TRP 6 6 6 TRP TRP B . n B 1 7 LYS 7 7 7 LYS LYS B . n B 1 8 ARG 8 8 8 ARG ARG B . n B 1 9 PRO 9 9 9 PRO PRO B . n B 1 10 LEU 10 10 10 LEU LEU B . n B 1 11 VAL 11 11 11 VAL VAL B . n B 1 12 THR 12 12 12 THR THR B . n B 1 13 ILE 13 13 13 ILE ILE B . n B 1 14 LYS 14 14 14 LYS LYS B . n B 1 15 ILE 15 15 15 ILE ILE B . n B 1 16 GLY 16 16 16 GLY GLY B . n B 1 17 GLY 17 17 17 GLY GLY B . n B 1 18 GLN 18 18 18 GLN GLN B . n B 1 19 LEU 19 19 19 LEU LEU B . n B 1 20 LYS 20 20 20 LYS LYS B . n B 1 21 GLU 21 21 21 GLU GLU B . n B 1 22 ALA 22 22 22 ALA ALA B . n B 1 23 LEU 23 23 23 LEU LEU B . n B 1 24 LEU 24 24 24 LEU LEU B . n B 1 25 ASP 25 25 25 ASP ASP B . n B 1 26 THR 26 26 26 THR THR B . n B 1 27 GLY 27 27 27 GLY GLY B . n B 1 28 ALA 28 28 28 ALA ALA B . n B 1 29 ASP 29 29 29 ASP ASP B . n B 1 30 ASP 30 30 30 ASP ASP B . n B 1 31 THR 31 31 31 THR THR B . n B 1 32 VAL 32 32 32 VAL VAL B . n B 1 33 LEU 33 33 33 LEU LEU B . n B 1 34 GLU 34 34 34 GLU GLU B . n B 1 35 GLU 35 35 35 GLU GLU B . n B 1 36 MET 36 36 36 MET MET B . n B 1 37 ASN 37 37 37 ASN ASN B . n B 1 38 LEU 38 38 38 LEU LEU B . n B 1 39 PRO 39 39 39 PRO PRO B . n B 1 40 GLY 40 40 40 GLY GLY B . n B 1 41 ARG 41 41 41 ARG ARG B . n B 1 42 TRP 42 42 42 TRP TRP B . n B 1 43 LYS 43 43 43 LYS LYS B . n B 1 44 PRO 44 44 44 PRO PRO B . n B 1 45 LYS 45 45 45 LYS LYS B . n B 1 46 MET 46 46 46 MET MET B . n B 1 47 ILE 47 47 47 ILE ILE B . n B 1 48 GLY 48 48 48 GLY GLY B . n B 1 49 GLY 49 49 49 GLY GLY B . n B 1 50 ILE 50 50 50 ILE ILE B . n B 1 51 GLY 51 51 51 GLY GLY B . n B 1 52 GLY 52 52 52 GLY GLY B . n B 1 53 PHE 53 53 53 PHE PHE B . n B 1 54 ILE 54 54 54 ILE ILE B . n B 1 55 LYS 55 55 55 LYS LYS B . n B 1 56 VAL 56 56 56 VAL VAL B . n B 1 57 ARG 57 57 57 ARG ARG B . n B 1 58 GLN 58 58 58 GLN GLN B . n B 1 59 TYR 59 59 59 TYR TYR B . n B 1 60 ASP 60 60 60 ASP ASP B . n B 1 61 GLN 61 61 61 GLN GLN B . n B 1 62 ILE 62 62 62 ILE ILE B . n B 1 63 LEU 63 63 63 LEU LEU B . n B 1 64 ILE 64 64 64 ILE ILE B . n B 1 65 GLU 65 65 65 GLU GLU B . n B 1 66 ILE 66 66 66 ILE ILE B . n B 1 67 CYS 67 67 67 CYS CYS B . n B 1 68 GLY 68 68 68 GLY GLY B . n B 1 69 HIS 69 69 69 HIS HIS B . n B 1 70 LYS 70 70 70 LYS LYS B . n B 1 71 ALA 71 71 71 ALA ALA B . n B 1 72 ILE 72 72 72 ILE ILE B . n B 1 73 GLY 73 73 73 GLY GLY B . n B 1 74 THR 74 74 74 THR THR B . n B 1 75 VAL 75 75 75 VAL VAL B . n B 1 76 LEU 76 76 76 LEU LEU B . n B 1 77 VAL 77 77 77 VAL VAL B . n B 1 78 GLY 78 78 78 GLY GLY B . n B 1 79 PRO 79 79 79 PRO PRO B . n B 1 80 THR 80 80 80 THR THR B . n B 1 81 PRO 81 81 81 PRO PRO B . n B 1 82 VAL 82 82 82 VAL VAL B . n B 1 83 ASN 83 83 83 ASN ASN B . n B 1 84 ILE 84 84 84 ILE ILE B . n B 1 85 ILE 85 85 85 ILE ILE B . n B 1 86 GLY 86 86 86 GLY GLY B . n B 1 87 ARG 87 87 87 ARG ARG B . n B 1 88 ASN 88 88 88 ASN ASN B . n B 1 89 LEU 89 89 89 LEU LEU B . n B 1 90 LEU 90 90 90 LEU LEU B . n B 1 91 THR 91 91 91 THR THR B . n B 1 92 GLN 92 92 92 GLN GLN B . n B 1 93 ILE 93 93 93 ILE ILE B . n B 1 94 GLY 94 94 94 GLY GLY B . n B 1 95 CYS 95 95 95 CYS CYS B . n B 1 96 THR 96 96 96 THR THR B . n B 1 97 LEU 97 97 97 LEU LEU B . n B 1 98 ASN 98 98 98 ASN ASN B . n B 1 99 PHE 99 99 99 PHE PHE B . n C 2 1 IVA 1 1 1 IVA IVA C . n C 2 2 VAL 2 2 2 VAL VAL C . n C 2 3 VAL 3 3 3 VAL VAL C . n C 2 4 STA 4 4 4 STA STA C . n C 2 5 ALA 5 5 5 ALA ALA C . n C 2 6 STA 6 6 6 STA STA C . n # _pdbx_molecule_features.prd_id PRD_000557 _pdbx_molecule_features.name Pepstatin _pdbx_molecule_features.type Oligopeptide _pdbx_molecule_features.class 'Enzyme inhibitor' _pdbx_molecule_features.details ? # _pdbx_molecule.instance_id 1 _pdbx_molecule.prd_id PRD_000557 _pdbx_molecule.asym_id C # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 5850 ? 1 MORE -40 ? 1 'SSA (A^2)' 9510 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-05-01 2 'Structure model' 1 1 2014-02-19 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Database references' # _pdbx_phasing_MR.entry_id 4EJD _pdbx_phasing_MR.method_rotation ? _pdbx_phasing_MR.method_translation ? _pdbx_phasing_MR.model_details 'Phaser MODE: MR_AUTO' _pdbx_phasing_MR.R_factor 47.980 _pdbx_phasing_MR.R_rigid_body ? _pdbx_phasing_MR.correlation_coeff_Fo_to_Fc ? _pdbx_phasing_MR.correlation_coeff_Io_to_Ic ? _pdbx_phasing_MR.d_res_high_rotation 1.800 _pdbx_phasing_MR.d_res_low_rotation 21.900 _pdbx_phasing_MR.d_res_high_translation 1.800 _pdbx_phasing_MR.d_res_low_translation 21.900 _pdbx_phasing_MR.packing ? _pdbx_phasing_MR.reflns_percent_rotation ? _pdbx_phasing_MR.reflns_percent_translation ? _pdbx_phasing_MR.sigma_F_rotation ? _pdbx_phasing_MR.sigma_F_translation ? _pdbx_phasing_MR.sigma_I_rotation ? _pdbx_phasing_MR.sigma_I_translation ? # _phasing.method MR # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 MOSFLM 3.3.16 2010/01/06 package 'Andrew G.W. Leslie' andrew@mrc-lmb.cam.ac.uk 'data reduction' http://www.mrc-lmb.cam.ac.uk/harry/mosflm/ ? ? 2 SCALA 3.3.16 2010/01/06 other 'Phil R. Evans' pre@mrc-lmb.cam.ac.uk 'data scaling' http://www.ccp4.ac.uk/dist/html/scala.html Fortran_77 ? 3 PHASER 2.1.4 'Mon Feb 8 16:31:08 2010' program 'Randy J. Read' cimr-phaser@lists.cam.ac.uk phasing http://www-structmed.cimr.cam.ac.uk/phaser/ ? ? 4 REFMAC . ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 5 PDB_EXTRACT 3.11 'April 22, 2011' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 6 Blu-Ice . ? ? ? ? 'data collection' ? ? ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A HOH 254 ? ? O A HOH 258 ? ? 1.86 2 1 O B ILE 72 ? ? NE2 B GLN 92 ? A 2.12 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 CE _pdbx_validate_symm_contact.auth_asym_id_1 B _pdbx_validate_symm_contact.auth_comp_id_1 MET _pdbx_validate_symm_contact.auth_seq_id_1 46 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 C _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 B _pdbx_validate_symm_contact.auth_comp_id_2 THR _pdbx_validate_symm_contact.auth_seq_id_2 80 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 4_455 _pdbx_validate_symm_contact.dist 2.12 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 C _pdbx_validate_rmsd_bond.auth_asym_id_1 C _pdbx_validate_rmsd_bond.auth_comp_id_1 ALA _pdbx_validate_rmsd_bond.auth_seq_id_1 5 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 N _pdbx_validate_rmsd_bond.auth_asym_id_2 C _pdbx_validate_rmsd_bond.auth_comp_id_2 STA _pdbx_validate_rmsd_bond.auth_seq_id_2 6 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.179 _pdbx_validate_rmsd_bond.bond_target_value 1.336 _pdbx_validate_rmsd_bond.bond_deviation -0.157 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.023 _pdbx_validate_rmsd_bond.linker_flag Y # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CG1 A VAL 32 ? A CB A VAL 32 ? ? CG2 A VAL 32 ? A 123.09 110.90 12.19 1.60 N 2 1 CA C STA 4 ? ? C C STA 4 ? ? N C ALA 5 ? ? 142.82 117.20 25.62 2.20 Y # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id GLU _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 35 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -35.55 _pdbx_validate_torsion.psi 124.23 # _pdbx_validate_peptide_omega.id 1 _pdbx_validate_peptide_omega.PDB_model_num 1 _pdbx_validate_peptide_omega.auth_comp_id_1 STA _pdbx_validate_peptide_omega.auth_asym_id_1 C _pdbx_validate_peptide_omega.auth_seq_id_1 4 _pdbx_validate_peptide_omega.PDB_ins_code_1 ? _pdbx_validate_peptide_omega.label_alt_id_1 ? _pdbx_validate_peptide_omega.auth_comp_id_2 ALA _pdbx_validate_peptide_omega.auth_asym_id_2 C _pdbx_validate_peptide_omega.auth_seq_id_2 5 _pdbx_validate_peptide_omega.PDB_ins_code_2 ? _pdbx_validate_peptide_omega.label_alt_id_2 ? _pdbx_validate_peptide_omega.omega -112.74 # _pdbx_validate_main_chain_plane.id 1 _pdbx_validate_main_chain_plane.PDB_model_num 1 _pdbx_validate_main_chain_plane.auth_comp_id STA _pdbx_validate_main_chain_plane.auth_asym_id C _pdbx_validate_main_chain_plane.auth_seq_id 4 _pdbx_validate_main_chain_plane.PDB_ins_code ? _pdbx_validate_main_chain_plane.label_alt_id ? _pdbx_validate_main_chain_plane.improper_torsion_angle 33.57 # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 ASP A 30 ? ? 0.070 'SIDE CHAIN' 2 1 GLN A 92 ? ? 0.097 'SIDE CHAIN' # _pdbx_validate_polymer_linkage.id 1 _pdbx_validate_polymer_linkage.PDB_model_num 1 _pdbx_validate_polymer_linkage.auth_atom_id_1 C _pdbx_validate_polymer_linkage.auth_asym_id_1 C _pdbx_validate_polymer_linkage.auth_comp_id_1 ALA _pdbx_validate_polymer_linkage.auth_seq_id_1 5 _pdbx_validate_polymer_linkage.PDB_ins_code_1 ? _pdbx_validate_polymer_linkage.label_alt_id_1 ? _pdbx_validate_polymer_linkage.auth_atom_id_2 N _pdbx_validate_polymer_linkage.auth_asym_id_2 C _pdbx_validate_polymer_linkage.auth_comp_id_2 STA _pdbx_validate_polymer_linkage.auth_seq_id_2 6 _pdbx_validate_polymer_linkage.PDB_ins_code_2 ? _pdbx_validate_polymer_linkage.label_alt_id_2 ? _pdbx_validate_polymer_linkage.dist 1.18 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLU 35 ? CG ? A GLU 35 CG 2 1 Y 1 A GLU 35 ? CD ? A GLU 35 CD 3 1 Y 1 A GLU 35 ? OE1 ? A GLU 35 OE1 4 1 Y 1 A GLU 35 ? OE2 ? A GLU 35 OE2 5 1 Y 1 B LYS 20 ? NZ ? B LYS 20 NZ 6 1 Y 1 B LYS 70 ? NZ ? B LYS 70 NZ # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 BETA-MERCAPTOETHANOL BME 4 '1H-indole-6-carboxylic acid' 1F1 5 GLYCEROL GOL 6 water HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 BME 1 101 4 BME BME A . E 4 1F1 1 102 46 1F1 1F1 A . F 5 GOL 1 101 1 GOL GOL B . G 3 BME 1 102 2 BME BME B . H 3 BME 1 103 3 BME BME B . I 6 HOH 1 201 10 HOH HOH A . I 6 HOH 2 202 11 HOH HOH A . I 6 HOH 3 203 12 HOH HOH A . I 6 HOH 4 204 13 HOH HOH A . I 6 HOH 5 205 16 HOH HOH A . I 6 HOH 6 206 17 HOH HOH A . I 6 HOH 7 207 18 HOH HOH A . I 6 HOH 8 208 19 HOH HOH A . I 6 HOH 9 209 21 HOH HOH A . I 6 HOH 10 210 22 HOH HOH A . I 6 HOH 11 211 23 HOH HOH A . I 6 HOH 12 212 24 HOH HOH A . I 6 HOH 13 213 30 HOH HOH A . I 6 HOH 14 214 31 HOH HOH A . I 6 HOH 15 215 33 HOH HOH A . I 6 HOH 16 216 35 HOH HOH A . I 6 HOH 17 217 38 HOH HOH A . I 6 HOH 18 218 40 HOH HOH A . I 6 HOH 19 219 41 HOH HOH A . I 6 HOH 20 220 42 HOH HOH A . I 6 HOH 21 221 43 HOH HOH A . I 6 HOH 22 222 45 HOH HOH A . I 6 HOH 23 223 48 HOH HOH A . I 6 HOH 24 224 51 HOH HOH A . I 6 HOH 25 225 55 HOH HOH A . I 6 HOH 26 226 58 HOH HOH A . I 6 HOH 27 227 61 HOH HOH A . I 6 HOH 28 228 62 HOH HOH A . I 6 HOH 29 229 63 HOH HOH A . I 6 HOH 30 230 67 HOH HOH A . I 6 HOH 31 231 68 HOH HOH A . I 6 HOH 32 232 71 HOH HOH A . I 6 HOH 33 233 74 HOH HOH A . I 6 HOH 34 234 75 HOH HOH A . I 6 HOH 35 235 76 HOH HOH A . I 6 HOH 36 236 77 HOH HOH A . I 6 HOH 37 237 79 HOH HOH A . I 6 HOH 38 238 81 HOH HOH A . I 6 HOH 39 239 82 HOH HOH A . I 6 HOH 40 240 83 HOH HOH A . I 6 HOH 41 241 90 HOH HOH A . I 6 HOH 42 242 93 HOH HOH A . I 6 HOH 43 243 96 HOH HOH A . I 6 HOH 44 244 97 HOH HOH A . I 6 HOH 45 245 98 HOH HOH A . I 6 HOH 46 246 102 HOH HOH A . I 6 HOH 47 247 104 HOH HOH A . I 6 HOH 48 248 108 HOH HOH A . I 6 HOH 49 249 109 HOH HOH A . I 6 HOH 50 250 111 HOH HOH A . I 6 HOH 51 251 116 HOH HOH A . I 6 HOH 52 252 119 HOH HOH A . I 6 HOH 53 253 120 HOH HOH A . I 6 HOH 54 254 121 HOH HOH A . I 6 HOH 55 255 123 HOH HOH A . I 6 HOH 56 256 125 HOH HOH A . I 6 HOH 57 257 129 HOH HOH A . I 6 HOH 58 258 131 HOH HOH A . I 6 HOH 59 259 134 HOH HOH A . I 6 HOH 60 260 135 HOH HOH A . I 6 HOH 61 261 136 HOH HOH A . I 6 HOH 62 262 138 HOH HOH A . I 6 HOH 63 263 139 HOH HOH A . I 6 HOH 64 264 140 HOH HOH A . I 6 HOH 65 265 141 HOH HOH A . I 6 HOH 66 266 142 HOH HOH A . I 6 HOH 67 267 144 HOH HOH A . I 6 HOH 68 268 146 HOH HOH A . I 6 HOH 69 269 151 HOH HOH A . I 6 HOH 70 270 153 HOH HOH A . I 6 HOH 71 271 154 HOH HOH A . I 6 HOH 72 272 155 HOH HOH A . I 6 HOH 73 273 158 HOH HOH A . I 6 HOH 74 274 159 HOH HOH A . I 6 HOH 75 275 160 HOH HOH A . I 6 HOH 76 276 164 HOH HOH A . I 6 HOH 77 277 166 HOH HOH A . I 6 HOH 78 278 168 HOH HOH A . I 6 HOH 79 279 169 HOH HOH A . J 6 HOH 1 201 5 HOH HOH B . J 6 HOH 2 202 6 HOH HOH B . J 6 HOH 3 203 7 HOH HOH B . J 6 HOH 4 204 8 HOH HOH B . J 6 HOH 5 205 9 HOH HOH B . J 6 HOH 6 206 14 HOH HOH B . J 6 HOH 7 207 15 HOH HOH B . J 6 HOH 8 208 20 HOH HOH B . J 6 HOH 9 209 25 HOH HOH B . J 6 HOH 10 210 26 HOH HOH B . J 6 HOH 11 211 27 HOH HOH B . J 6 HOH 12 212 28 HOH HOH B . J 6 HOH 13 213 29 HOH HOH B . J 6 HOH 14 214 32 HOH HOH B . J 6 HOH 15 215 34 HOH HOH B . J 6 HOH 16 216 37 HOH HOH B . J 6 HOH 17 217 39 HOH HOH B . J 6 HOH 18 218 44 HOH HOH B . J 6 HOH 19 219 47 HOH HOH B . J 6 HOH 20 220 49 HOH HOH B . J 6 HOH 21 221 50 HOH HOH B . J 6 HOH 22 222 53 HOH HOH B . J 6 HOH 23 223 54 HOH HOH B . J 6 HOH 24 224 56 HOH HOH B . J 6 HOH 25 225 57 HOH HOH B . J 6 HOH 26 226 59 HOH HOH B . J 6 HOH 27 227 60 HOH HOH B . J 6 HOH 28 228 64 HOH HOH B . J 6 HOH 29 229 66 HOH HOH B . J 6 HOH 30 230 69 HOH HOH B . J 6 HOH 31 231 70 HOH HOH B . J 6 HOH 32 232 72 HOH HOH B . J 6 HOH 33 233 73 HOH HOH B . J 6 HOH 34 234 78 HOH HOH B . J 6 HOH 35 235 80 HOH HOH B . J 6 HOH 36 236 84 HOH HOH B . J 6 HOH 37 237 85 HOH HOH B . J 6 HOH 38 238 86 HOH HOH B . J 6 HOH 39 239 87 HOH HOH B . J 6 HOH 40 240 88 HOH HOH B . J 6 HOH 41 241 89 HOH HOH B . J 6 HOH 42 242 91 HOH HOH B . J 6 HOH 43 243 92 HOH HOH B . J 6 HOH 44 244 94 HOH HOH B . J 6 HOH 45 245 99 HOH HOH B . J 6 HOH 46 246 100 HOH HOH B . J 6 HOH 47 247 101 HOH HOH B . J 6 HOH 48 248 103 HOH HOH B . J 6 HOH 49 249 105 HOH HOH B . J 6 HOH 50 250 106 HOH HOH B . J 6 HOH 51 251 107 HOH HOH B . J 6 HOH 52 252 110 HOH HOH B . J 6 HOH 53 253 112 HOH HOH B . J 6 HOH 54 254 113 HOH HOH B . J 6 HOH 55 255 114 HOH HOH B . J 6 HOH 56 256 115 HOH HOH B . J 6 HOH 57 257 117 HOH HOH B . J 6 HOH 58 258 118 HOH HOH B . J 6 HOH 59 259 122 HOH HOH B . J 6 HOH 60 260 124 HOH HOH B . J 6 HOH 61 261 126 HOH HOH B . J 6 HOH 62 262 127 HOH HOH B . J 6 HOH 63 263 128 HOH HOH B . J 6 HOH 64 264 130 HOH HOH B . J 6 HOH 65 265 132 HOH HOH B . J 6 HOH 66 266 133 HOH HOH B . J 6 HOH 67 267 137 HOH HOH B . J 6 HOH 68 268 143 HOH HOH B . J 6 HOH 69 269 145 HOH HOH B . J 6 HOH 70 270 147 HOH HOH B . J 6 HOH 71 271 148 HOH HOH B . J 6 HOH 72 272 149 HOH HOH B . J 6 HOH 73 273 150 HOH HOH B . J 6 HOH 74 274 156 HOH HOH B . J 6 HOH 75 275 157 HOH HOH B . J 6 HOH 76 276 161 HOH HOH B . J 6 HOH 77 277 162 HOH HOH B . J 6 HOH 78 278 163 HOH HOH B . J 6 HOH 79 279 165 HOH HOH B . J 6 HOH 80 280 167 HOH HOH B . J 6 HOH 81 281 170 HOH HOH B . K 6 HOH 1 101 65 HOH HOH C . K 6 HOH 2 102 95 HOH HOH C . K 6 HOH 3 103 36 HOH HOH C . K 6 HOH 4 104 52 HOH HOH C . K 6 HOH 5 105 152 HOH HOH C . #