HEADER HYDROLASE/DNA 08-APR-12 4EJY TITLE STRUCTURE OF MBOGG1 IN COMPLEX WITH HIGH AFFINITY DNA LIGAND COMPND MOL_ID: 1; COMPND 2 MOLECULE: 3-METHYLADENINE DNA GLYCOSYLASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: 8-OXOGUANINE-DNA-GLYCOSYLASE; COMPND 5 EC: 3.2.2.-; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA (5'-D(*AP*GP*CP*GP*TP*CP*CP*AP*(3DR) COMPND 9 P*GP*TP*CP*TP*AP*CP*C)-3'); COMPND 10 CHAIN: C, E; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: DNA (5'-D(*T*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*GP*C)- COMPND 14 3'); COMPND 15 CHAIN: D, F; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOANAEROBACTER TENGCONGENSIS; SOURCE 3 ORGANISM_TAXID: 273068; SOURCE 4 STRAIN: MB4; SOURCE 5 GENE: ALKA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 MOL_ID: 3; SOURCE 11 SYNTHETIC: YES KEYWDS 8-OXOGUANINE DNA GLYCOSYLASE, HYDROLASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR T.JIANG,H.J.YU,L.J.BI,X.E.ZHANG,M.Z.YANG REVDAT 2 08-NOV-23 4EJY 1 REMARK SEQADV LINK REVDAT 1 20-MAR-13 4EJY 0 JRNL AUTH H.J.YU,M.Z.YANG,X.E.ZHANG,L.J.BI,T.JIANG JRNL TITL CRYSTAL STRUCTURES OF MBOGG1 IN COMPLEX WITH TWO ABASIC DNA JRNL TITL 2 LIGANDS JRNL REF J.STRUCT.BIOL. V. 181 252 2013 JRNL REFN ISSN 1047-8477 JRNL PMID 23246782 JRNL DOI 10.1016/J.JSB.2012.12.003 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 49342 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.224 REMARK 3 R VALUE (WORKING SET) : 0.222 REMARK 3 FREE R VALUE : 0.258 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2657 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3621 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.91 REMARK 3 BIN R VALUE (WORKING SET) : 0.2610 REMARK 3 BIN FREE R VALUE SET COUNT : 197 REMARK 3 BIN FREE R VALUE : 0.3080 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4706 REMARK 3 NUCLEIC ACID ATOMS : 1241 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 502 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.13 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.04000 REMARK 3 B22 (A**2) : 1.60000 REMARK 3 B33 (A**2) : -1.63000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 1.10000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.239 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.190 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.940 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.925 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6251 ; 0.006 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8719 ; 0.986 ; 2.218 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 580 ; 4.558 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 240 ;34.208 ;24.167 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 848 ;14.161 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ; 8.899 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 953 ; 0.066 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4312 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2866 ; 0.436 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4646 ; 0.812 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3385 ; 0.857 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 4071 ; 1.450 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES: REFINED INDIVIDUALLY. THE STRUCTURE WAS REMARK 3 REFINED ALSO WITH PHENIX.REFINE. REMARK 4 REMARK 4 4EJY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-APR-12. REMARK 100 THE DEPOSITION ID IS D_1000071712. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-JUN-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0089 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 52075 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.500 REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 6.90 REMARK 200 R MERGE FOR SHELL (I) : 0.32100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3I0W REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 3350, 0.2-0.25M SODIUM REMARK 280 MALONATE, PH 5.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 51.44200 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4020 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17290 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3920 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17430 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -13 REMARK 465 ARG A -12 REMARK 465 GLY A -11 REMARK 465 SER A -10 REMARK 465 HIS A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 GLY A -3 REMARK 465 SER A -2 REMARK 465 MET A -1 REMARK 465 ARG A 0 REMARK 465 LYS A 290 REMARK 465 ILE A 291 REMARK 465 PHE A 292 REMARK 465 GLY A 293 REMARK 465 GLU A 294 REMARK 465 ARG A 295 REMARK 465 LYS A 296 REMARK 465 LYS A 297 REMARK 465 MET B -13 REMARK 465 ARG B -12 REMARK 465 GLY B -11 REMARK 465 SER B -10 REMARK 465 HIS B -9 REMARK 465 HIS B -8 REMARK 465 HIS B -7 REMARK 465 HIS B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 GLY B -3 REMARK 465 SER B -2 REMARK 465 MET B -1 REMARK 465 LYS B 289 REMARK 465 LYS B 290 REMARK 465 ILE B 291 REMARK 465 PHE B 292 REMARK 465 GLY B 293 REMARK 465 GLU B 294 REMARK 465 ARG B 295 REMARK 465 LYS B 296 REMARK 465 LYS B 297 REMARK 465 DT D 1 REMARK 465 DT F 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 2 CG CD CE NZ REMARK 470 LYS A 289 CG CD CE NZ REMARK 470 LYS B 2 CG CD CE NZ REMARK 470 LYS B 253 CG CD CE NZ REMARK 470 ARG B 254 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 255 CG CD OE1 OE2 REMARK 470 DG D 2 P OP1 OP2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 235 40.20 -81.43 REMARK 500 ASN B 64 41.47 72.42 REMARK 500 ILE B 73 -59.40 -120.58 REMARK 500 ASP B 235 30.68 -80.72 REMARK 500 LYS B 253 -16.19 70.51 REMARK 500 PHE B 281 -70.64 -54.97 REMARK 500 GLU B 286 55.01 -91.91 REMARK 500 MET B 287 4.15 -152.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 301 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 MET A 213 O REMARK 620 2 ILE A 215 O 93.6 REMARK 620 3 VAL A 218 O 93.3 94.4 REMARK 620 4 HOH A 478 O 82.8 88.4 175.3 REMARK 620 5 DC C 22 OP1 170.4 92.8 93.4 90.2 REMARK 620 6 HOH C 104 O 82.5 176.0 86.9 90.1 90.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 301 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 MET B 213 O REMARK 620 2 ILE B 215 O 87.8 REMARK 620 3 VAL B 218 O 87.2 88.6 REMARK 620 4 HOH B 445 O 78.1 77.4 160.0 REMARK 620 5 DC E 22 OP1 176.6 92.0 96.2 98.5 REMARK 620 6 HOH E 102 O 86.2 167.9 80.6 111.5 94.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4EJZ RELATED DB: PDB DBREF 4EJY A 1 297 UNP Q8R5T9 Q8R5T9_THETN 1 297 DBREF 4EJY B 1 297 UNP Q8R5T9 Q8R5T9_THETN 1 297 DBREF 4EJY C 11 26 PDB 4EJY 4EJY 11 26 DBREF 4EJY E 11 26 PDB 4EJY 4EJY 11 26 DBREF 4EJY D 1 16 PDB 4EJY 4EJY 1 16 DBREF 4EJY F 1 16 PDB 4EJY 4EJY 1 16 SEQADV 4EJY MET A -13 UNP Q8R5T9 EXPRESSION TAG SEQADV 4EJY ARG A -12 UNP Q8R5T9 EXPRESSION TAG SEQADV 4EJY GLY A -11 UNP Q8R5T9 EXPRESSION TAG SEQADV 4EJY SER A -10 UNP Q8R5T9 EXPRESSION TAG SEQADV 4EJY HIS A -9 UNP Q8R5T9 EXPRESSION TAG SEQADV 4EJY HIS A -8 UNP Q8R5T9 EXPRESSION TAG SEQADV 4EJY HIS A -7 UNP Q8R5T9 EXPRESSION TAG SEQADV 4EJY HIS A -6 UNP Q8R5T9 EXPRESSION TAG SEQADV 4EJY HIS A -5 UNP Q8R5T9 EXPRESSION TAG SEQADV 4EJY HIS A -4 UNP Q8R5T9 EXPRESSION TAG SEQADV 4EJY GLY A -3 UNP Q8R5T9 EXPRESSION TAG SEQADV 4EJY SER A -2 UNP Q8R5T9 EXPRESSION TAG SEQADV 4EJY MET A -1 UNP Q8R5T9 EXPRESSION TAG SEQADV 4EJY ARG A 0 UNP Q8R5T9 EXPRESSION TAG SEQADV 4EJY MET B -13 UNP Q8R5T9 EXPRESSION TAG SEQADV 4EJY ARG B -12 UNP Q8R5T9 EXPRESSION TAG SEQADV 4EJY GLY B -11 UNP Q8R5T9 EXPRESSION TAG SEQADV 4EJY SER B -10 UNP Q8R5T9 EXPRESSION TAG SEQADV 4EJY HIS B -9 UNP Q8R5T9 EXPRESSION TAG SEQADV 4EJY HIS B -8 UNP Q8R5T9 EXPRESSION TAG SEQADV 4EJY HIS B -7 UNP Q8R5T9 EXPRESSION TAG SEQADV 4EJY HIS B -6 UNP Q8R5T9 EXPRESSION TAG SEQADV 4EJY HIS B -5 UNP Q8R5T9 EXPRESSION TAG SEQADV 4EJY HIS B -4 UNP Q8R5T9 EXPRESSION TAG SEQADV 4EJY GLY B -3 UNP Q8R5T9 EXPRESSION TAG SEQADV 4EJY SER B -2 UNP Q8R5T9 EXPRESSION TAG SEQADV 4EJY MET B -1 UNP Q8R5T9 EXPRESSION TAG SEQADV 4EJY ARG B 0 UNP Q8R5T9 EXPRESSION TAG SEQRES 1 A 311 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER MET SEQRES 2 A 311 ARG MET LYS TYR ASN VAL GLU GLU LYS GLY THR LYS VAL SEQRES 3 A 311 ILE VAL ARG GLY ILE ALA ASP PHE ASN LEU LYS GLU THR SEQRES 4 A 311 PHE GLU SER GLY GLN CYS PHE ARG TRP ASN GLU GLU GLU SEQRES 5 A 311 ASP GLY SER TYR THR GLY VAL ALA TYR ASP ARG VAL VAL SEQRES 6 A 311 ASN VAL LYS LEU GLU GLY ASP THR LEU ILE ILE ASP ASN SEQRES 7 A 311 THR ASN LEU THR ASP PHE TYR ASP ILE TRP PHE ASP TYR SEQRES 8 A 311 PHE ASP LEU GLY ARG ASP TYR GLY GLN ILE LYS GLU SER SEQRES 9 A 311 LEU SER LYS ASP PRO VAL LEU LYS GLU ALA ILE LYS PHE SEQRES 10 A 311 GLY GLN GLY ILE ARG ILE LEU ARG GLN ASP THR TRP GLU SEQRES 11 A 311 THR LEU VAL SER PHE ILE VAL SER GLN ASN ASN ARG ILE SEQRES 12 A 311 PRO GLN ILE LYS LYS VAL ILE GLU ASN LEU ALA THR SER SEQRES 13 A 311 PHE GLY ASN PRO ILE GLU TYR LYS GLY LYS ILE TYR TYR SEQRES 14 A 311 THR PHE PRO LYS PRO GLU GLU LEU VAL MET TYR ASP VAL SEQRES 15 A 311 GLU THR ILE ALA LYS THR ARG CYS GLY PHE ARG ALA LYS SEQRES 16 A 311 TYR ILE PHE ASP ALA ALA SER LYS VAL PHE SER GLY GLU SEQRES 17 A 311 ILE ASN LEU LEU LYS LEU HIS GLU TYR SER THR SER GLU SEQRES 18 A 311 ILE ARG ASP ILE LEU MET THR ILE ASN GLY VAL GLY PRO SEQRES 19 A 311 LYS VAL ALA ASP CYS VAL ILE LEU TYR SER ILE GLY ARG SEQRES 20 A 311 TYR ASP THR PHE PRO THR ASP VAL TRP ILE LYS ARG ILE SEQRES 21 A 311 VAL GLU HIS LEU TYR LEU LYS ARG GLU GLY THR PRO VAL SEQRES 22 A 311 GLU ILE GLN LEU PHE ALA ILE ASP LYS PHE GLY ASP LEU SEQRES 23 A 311 SER GLY PHE ALA GLN GLN TYR LEU PHE TYR TYR GLY ARG SEQRES 24 A 311 GLU MET GLY LYS LYS ILE PHE GLY GLU ARG LYS LYS SEQRES 1 B 311 MET ARG GLY SER HIS HIS HIS HIS HIS HIS GLY SER MET SEQRES 2 B 311 ARG MET LYS TYR ASN VAL GLU GLU LYS GLY THR LYS VAL SEQRES 3 B 311 ILE VAL ARG GLY ILE ALA ASP PHE ASN LEU LYS GLU THR SEQRES 4 B 311 PHE GLU SER GLY GLN CYS PHE ARG TRP ASN GLU GLU GLU SEQRES 5 B 311 ASP GLY SER TYR THR GLY VAL ALA TYR ASP ARG VAL VAL SEQRES 6 B 311 ASN VAL LYS LEU GLU GLY ASP THR LEU ILE ILE ASP ASN SEQRES 7 B 311 THR ASN LEU THR ASP PHE TYR ASP ILE TRP PHE ASP TYR SEQRES 8 B 311 PHE ASP LEU GLY ARG ASP TYR GLY GLN ILE LYS GLU SER SEQRES 9 B 311 LEU SER LYS ASP PRO VAL LEU LYS GLU ALA ILE LYS PHE SEQRES 10 B 311 GLY GLN GLY ILE ARG ILE LEU ARG GLN ASP THR TRP GLU SEQRES 11 B 311 THR LEU VAL SER PHE ILE VAL SER GLN ASN ASN ARG ILE SEQRES 12 B 311 PRO GLN ILE LYS LYS VAL ILE GLU ASN LEU ALA THR SER SEQRES 13 B 311 PHE GLY ASN PRO ILE GLU TYR LYS GLY LYS ILE TYR TYR SEQRES 14 B 311 THR PHE PRO LYS PRO GLU GLU LEU VAL MET TYR ASP VAL SEQRES 15 B 311 GLU THR ILE ALA LYS THR ARG CYS GLY PHE ARG ALA LYS SEQRES 16 B 311 TYR ILE PHE ASP ALA ALA SER LYS VAL PHE SER GLY GLU SEQRES 17 B 311 ILE ASN LEU LEU LYS LEU HIS GLU TYR SER THR SER GLU SEQRES 18 B 311 ILE ARG ASP ILE LEU MET THR ILE ASN GLY VAL GLY PRO SEQRES 19 B 311 LYS VAL ALA ASP CYS VAL ILE LEU TYR SER ILE GLY ARG SEQRES 20 B 311 TYR ASP THR PHE PRO THR ASP VAL TRP ILE LYS ARG ILE SEQRES 21 B 311 VAL GLU HIS LEU TYR LEU LYS ARG GLU GLY THR PRO VAL SEQRES 22 B 311 GLU ILE GLN LEU PHE ALA ILE ASP LYS PHE GLY ASP LEU SEQRES 23 B 311 SER GLY PHE ALA GLN GLN TYR LEU PHE TYR TYR GLY ARG SEQRES 24 B 311 GLU MET GLY LYS LYS ILE PHE GLY GLU ARG LYS LYS SEQRES 1 C 16 DA DG DC DG DT DC DC DA 3DR DG DT DC DT SEQRES 2 C 16 DA DC DC SEQRES 1 D 16 DT DG DG DT DA DG DA DC DC DT DG DG DA SEQRES 2 D 16 DC DG DC SEQRES 1 E 16 DA DG DC DG DT DC DC DA 3DR DG DT DC DT SEQRES 2 E 16 DA DC DC SEQRES 1 F 16 DT DG DG DT DA DG DA DC DC DT DG DG DA SEQRES 2 F 16 DC DG DC HET 3DR C 19 22 HET 3DR E 19 11 HET NA A 301 1 HET NA B 301 1 HETNAM 3DR 1',2'-DIDEOXYRIBOFURANOSE-5'-PHOSPHATE HETNAM NA SODIUM ION HETSYN 3DR ABASIC DIDEOXYRIBOSE FORMUL 3 3DR 2(C5 H11 O6 P) FORMUL 7 NA 2(NA 1+) FORMUL 9 HOH *502(H2 O) HELIX 1 1 ASN A 21 GLU A 27 1 7 HELIX 2 2 ASN A 66 ILE A 73 1 8 HELIX 3 3 ILE A 73 PHE A 78 1 6 HELIX 4 4 ASP A 83 SER A 92 1 10 HELIX 5 5 ASP A 94 LYS A 102 1 9 HELIX 6 6 ASP A 113 GLN A 125 1 13 HELIX 7 7 ARG A 128 GLY A 144 1 17 HELIX 8 8 LYS A 159 LEU A 163 5 5 HELIX 9 9 ASP A 167 LYS A 173 1 7 HELIX 10 10 THR A 174 ARG A 175 5 2 HELIX 11 11 CYS A 176 PHE A 178 5 3 HELIX 12 12 ARG A 179 SER A 192 1 14 HELIX 13 13 LYS A 199 TYR A 203 5 5 HELIX 14 14 SER A 204 MET A 213 1 10 HELIX 15 15 GLY A 219 SER A 230 1 12 HELIX 16 16 ASP A 240 TYR A 251 1 12 HELIX 17 17 THR A 257 GLY A 270 1 14 HELIX 18 18 LEU A 272 GLY A 288 1 17 HELIX 19 19 ASN B 21 GLU B 27 1 7 HELIX 20 20 ASN B 66 ILE B 73 1 8 HELIX 21 21 ILE B 73 PHE B 78 1 6 HELIX 22 22 ASP B 83 SER B 92 1 10 HELIX 23 23 ASP B 94 LYS B 102 1 9 HELIX 24 24 ASP B 113 GLN B 125 1 13 HELIX 25 25 ARG B 128 GLY B 144 1 17 HELIX 26 26 LYS B 159 LEU B 163 5 5 HELIX 27 27 ASP B 167 ALA B 172 1 6 HELIX 28 28 LYS B 173 ARG B 175 5 3 HELIX 29 29 CYS B 176 PHE B 178 5 3 HELIX 30 30 ARG B 179 SER B 192 1 14 HELIX 31 31 LYS B 199 TYR B 203 5 5 HELIX 32 32 SER B 204 MET B 213 1 10 HELIX 33 33 GLY B 219 SER B 230 1 12 HELIX 34 34 ASP B 240 TYR B 251 1 12 HELIX 35 35 THR B 257 GLY B 270 1 14 HELIX 36 36 LEU B 272 GLU B 286 1 15 SHEET 1 A 6 ASN A 4 LYS A 8 0 SHEET 2 A 6 LYS A 11 ARG A 15 -1 O ILE A 13 N GLU A 6 SHEET 3 A 6 THR A 59 ASP A 63 -1 O LEU A 60 N VAL A 14 SHEET 4 A 6 ARG A 49 GLU A 56 -1 N LYS A 54 O ILE A 61 SHEET 5 A 6 TYR A 42 ALA A 46 -1 N TYR A 42 O VAL A 53 SHEET 6 A 6 TRP A 34 GLU A 36 -1 N ASN A 35 O THR A 43 SHEET 1 B 2 PRO A 146 TYR A 149 0 SHEET 2 B 2 LYS A 152 TYR A 155 -1 O TYR A 154 N ILE A 147 SHEET 1 C 6 ASN B 4 LYS B 8 0 SHEET 2 C 6 LYS B 11 ARG B 15 -1 O ILE B 13 N GLU B 6 SHEET 3 C 6 THR B 59 ASP B 63 -1 O LEU B 60 N VAL B 14 SHEET 4 C 6 ARG B 49 GLU B 56 -1 N LYS B 54 O ILE B 61 SHEET 5 C 6 TYR B 42 ALA B 46 -1 N TYR B 42 O VAL B 53 SHEET 6 C 6 TRP B 34 GLU B 36 -1 N ASN B 35 O THR B 43 SHEET 1 D 2 PRO B 146 TYR B 149 0 SHEET 2 D 2 LYS B 152 TYR B 155 -1 O TYR B 154 N ILE B 147 LINK O3' DA C 18 P A3DR C 19 1555 1555 1.60 LINK O3' DA C 18 P B3DR C 19 1555 1555 1.60 LINK O3'A3DR C 19 P A DG C 20 1555 1555 1.59 LINK O3'B3DR C 19 P B DG C 20 1555 1555 1.61 LINK O3' DA E 18 P 3DR E 19 1555 1555 1.59 LINK O3' 3DR E 19 P DG E 20 1555 1555 1.61 LINK O MET A 213 NA NA A 301 1555 1555 2.40 LINK O ILE A 215 NA NA A 301 1555 1555 2.46 LINK O VAL A 218 NA NA A 301 1555 1555 2.60 LINK NA NA A 301 O HOH A 478 1555 1555 2.32 LINK NA NA A 301 OP1 DC C 22 1555 1555 2.33 LINK NA NA A 301 O HOH C 104 1555 1555 2.47 LINK O MET B 213 NA NA B 301 1555 1555 2.56 LINK O ILE B 215 NA NA B 301 1555 1555 2.56 LINK O VAL B 218 NA NA B 301 1555 1555 2.70 LINK NA NA B 301 O HOH B 445 1555 1555 2.37 LINK NA NA B 301 OP1 DC E 22 1555 1555 2.29 LINK NA NA B 301 O HOH E 102 1555 1555 2.48 SITE 1 AC1 6 MET A 213 ILE A 215 VAL A 218 HOH A 478 SITE 2 AC1 6 DC C 22 HOH C 104 SITE 1 AC2 6 MET B 213 ILE B 215 VAL B 218 HOH B 445 SITE 2 AC2 6 DC E 22 HOH E 102 CRYST1 56.613 102.884 67.284 90.00 90.18 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017664 0.000000 0.000056 0.00000 SCALE2 0.000000 0.009720 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014862 0.00000