HEADER HYDROLASE 09-APR-12 4EKP TITLE T4 LYSOZYME L99A/M102H WITH NITROBENZENE BOUND COMPND MOL_ID: 1; COMPND 2 MOLECULE: LYSOZYME; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: ENDOLYSIN, LYSIS PROTEIN, MURAMIDASE; COMPND 5 EC: 3.2.1.17; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROBACTERIA PHAGE T4; SOURCE 3 ORGANISM_TAXID: 10665; SOURCE 4 GENE: E; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28 KEYWDS HYDROLASE, ALKYLATION OF CYS97 EXPDTA X-RAY DIFFRACTION AUTHOR M.MERSKI,B.K.SHOICHET REVDAT 4 13-SEP-23 4EKP 1 REMARK SEQADV LINK REVDAT 3 17-OCT-12 4EKP 1 JRNL REVDAT 2 03-OCT-12 4EKP 1 JRNL REVDAT 1 05-SEP-12 4EKP 0 JRNL AUTH M.MERSKI,B.K.SHOICHET JRNL TITL ENGINEERING A MODEL PROTEIN CAVITY TO CATALYZE THE KEMP JRNL TITL 2 ELIMINATION. JRNL REF PROC.NATL.ACAD.SCI.USA V. 109 16179 2012 JRNL REFN ISSN 0027-8424 JRNL PMID 22988064 JRNL DOI 10.1073/PNAS.1208076109 REMARK 2 REMARK 2 RESOLUTION. 1.64 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.7.1_743 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.64 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.19 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.990 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 45871 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.196 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.010 REMARK 3 FREE R VALUE TEST SET COUNT : 1839 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.1995 - 3.8554 0.98 3423 142 0.1619 0.1763 REMARK 3 2 3.8554 - 3.0604 0.98 3359 141 0.1572 0.1616 REMARK 3 3 3.0604 - 2.6736 0.99 3396 143 0.1723 0.1900 REMARK 3 4 2.6736 - 2.4292 0.99 3388 138 0.1654 0.2176 REMARK 3 5 2.4292 - 2.2551 0.99 3415 142 0.1591 0.2014 REMARK 3 6 2.2551 - 2.1221 0.99 3384 140 0.1594 0.1838 REMARK 3 7 2.1221 - 2.0158 0.99 3372 142 0.1593 0.2021 REMARK 3 8 2.0158 - 1.9281 0.99 3384 144 0.1620 0.1933 REMARK 3 9 1.9281 - 1.8539 0.99 3387 139 0.1650 0.1934 REMARK 3 10 1.8539 - 1.7899 0.99 3372 144 0.1842 0.2143 REMARK 3 11 1.7899 - 1.7339 0.99 3377 139 0.2079 0.2363 REMARK 3 12 1.7339 - 1.6844 0.99 3376 141 0.2224 0.2860 REMARK 3 13 1.6844 - 1.6400 0.99 3399 144 0.2480 0.3001 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.95 REMARK 3 K_SOL : 0.38 REMARK 3 B_SOL : 45.12 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.390 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.930 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.46 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.55 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.78280 REMARK 3 B22 (A**2) : -0.27840 REMARK 3 B33 (A**2) : -0.50440 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.45720 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 3022 REMARK 3 ANGLE : 1.057 4097 REMARK 3 CHIRALITY : 0.069 447 REMARK 3 PLANARITY : 0.005 533 REMARK 3 DIHEDRAL : 12.738 1141 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND RESID -10:164 REMARK 3 ORIGIN FOR THE GROUP (A): 6.5722 13.7464 10.2622 REMARK 3 T TENSOR REMARK 3 T11: 0.0297 T22: 0.0190 REMARK 3 T33: 0.0152 T12: 0.0152 REMARK 3 T13: 0.0233 T23: -0.0210 REMARK 3 L TENSOR REMARK 3 L11: 0.6885 L22: 0.6257 REMARK 3 L33: 0.8289 L12: 0.1442 REMARK 3 L13: 0.1925 L23: -0.0423 REMARK 3 S TENSOR REMARK 3 S11: 0.0837 S12: -0.1741 S13: 0.2026 REMARK 3 S21: 0.0783 S22: 0.0007 S23: 0.0876 REMARK 3 S31: -0.1580 S32: -0.0583 S33: 0.0275 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B AND RESID -9:164 REMARK 3 ORIGIN FOR THE GROUP (A): 30.3272 20.2641 -9.2728 REMARK 3 T TENSOR REMARK 3 T11: 0.0306 T22: 0.0274 REMARK 3 T33: 0.0279 T12: -0.0086 REMARK 3 T13: -0.0060 T23: 0.0065 REMARK 3 L TENSOR REMARK 3 L11: 0.3480 L22: 0.3494 REMARK 3 L33: 0.4669 L12: 0.1381 REMARK 3 L13: 0.0678 L23: 0.1388 REMARK 3 S TENSOR REMARK 3 S11: 0.0350 S12: 0.0242 S13: -0.0587 REMARK 3 S21: -0.0071 S22: 0.0353 S23: -0.0141 REMARK 3 S31: 0.1025 S32: -0.0226 S33: 0.0790 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4EKP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-APR-12. REMARK 100 THE DEPOSITION ID IS D_1000071739. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-NOV-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.116 REMARK 200 MONOCHROMATOR : TWO FLAT SI(111) CRYSTALS, REMARK 200 MOUNTED IN A MODEL DCM FROM KHOZU REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45872 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.640 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.04600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.64 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.33500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX 1.7.1_743 REMARK 200 STARTING MODEL: PDB ENTRY 4E97 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% (W/V) PEG-6000, 0.3 M LISO4, 3% REMARK 280 (W/V) TMAO, 50 MM 2-MERCAPTOETHANOL, 50 MM 2-HYDROXYETHYL REMARK 280 DISULFIDE, PH 4.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 37.76500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16200 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 48.37000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 -37.76500 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -22 REMARK 465 GLY A -21 REMARK 465 HIS A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 ASP A -14 REMARK 465 TYR A -13 REMARK 465 ASP A -12 REMARK 465 ILE A -11 REMARK 465 MET B -22 REMARK 465 GLY B -21 REMARK 465 HIS B -20 REMARK 465 HIS B -19 REMARK 465 HIS B -18 REMARK 465 HIS B -17 REMARK 465 HIS B -16 REMARK 465 HIS B -15 REMARK 465 ASP B -14 REMARK 465 TYR B -13 REMARK 465 ASP B -12 REMARK 465 ILE B -11 REMARK 465 PRO B -10 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A -7 CG CD OE1 OE2 REMARK 470 LYS A 16 CD CE NZ REMARK 470 LYS A 48 CD CE NZ REMARK 470 GLU A 64 CG CD OE1 OE2 REMARK 470 LYS A 65 CD CE NZ REMARK 470 ARG A 137 CD NE CZ NH1 NH2 REMARK 470 GLU B -7 CG CD OE1 OE2 REMARK 470 LYS B 16 CE NZ REMARK 470 LYS B 83 CE NZ REMARK 470 ARG B 137 CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 142 67.52 -150.62 REMARK 500 CYS A 142 67.64 -150.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BME A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NBZ A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BME A 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 208 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BME B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NBZ B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BME B 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HED B 207 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4E97 RELATED DB: PDB REMARK 900 RELATED ID: 4EKQ RELATED DB: PDB REMARK 900 RELATED ID: 4EKR RELATED DB: PDB REMARK 900 RELATED ID: 4EKS RELATED DB: PDB DBREF 4EKP A 1 164 UNP P00720 LYS_BPT4 1 164 DBREF 4EKP B 1 164 UNP P00720 LYS_BPT4 1 164 SEQADV 4EKP MET A -22 UNP P00720 EXPRESSION TAG SEQADV 4EKP GLY A -21 UNP P00720 EXPRESSION TAG SEQADV 4EKP HIS A -20 UNP P00720 EXPRESSION TAG SEQADV 4EKP HIS A -19 UNP P00720 EXPRESSION TAG SEQADV 4EKP HIS A -18 UNP P00720 EXPRESSION TAG SEQADV 4EKP HIS A -17 UNP P00720 EXPRESSION TAG SEQADV 4EKP HIS A -16 UNP P00720 EXPRESSION TAG SEQADV 4EKP HIS A -15 UNP P00720 EXPRESSION TAG SEQADV 4EKP ASP A -14 UNP P00720 EXPRESSION TAG SEQADV 4EKP TYR A -13 UNP P00720 EXPRESSION TAG SEQADV 4EKP ASP A -12 UNP P00720 EXPRESSION TAG SEQADV 4EKP ILE A -11 UNP P00720 EXPRESSION TAG SEQADV 4EKP PRO A -10 UNP P00720 EXPRESSION TAG SEQADV 4EKP THR A -9 UNP P00720 EXPRESSION TAG SEQADV 4EKP THR A -8 UNP P00720 EXPRESSION TAG SEQADV 4EKP GLU A -7 UNP P00720 EXPRESSION TAG SEQADV 4EKP ASN A -6 UNP P00720 EXPRESSION TAG SEQADV 4EKP LEU A -5 UNP P00720 EXPRESSION TAG SEQADV 4EKP TYR A -4 UNP P00720 EXPRESSION TAG SEQADV 4EKP PHE A -3 UNP P00720 EXPRESSION TAG SEQADV 4EKP GLN A -2 UNP P00720 EXPRESSION TAG SEQADV 4EKP GLY A -1 UNP P00720 EXPRESSION TAG SEQADV 4EKP SER A 0 UNP P00720 EXPRESSION TAG SEQADV 4EKP CYS A 21 UNP P00720 THR 21 ENGINEERED MUTATION SEQADV 4EKP ASP A 38 UNP P00720 SER 38 ENGINEERED MUTATION SEQADV 4EKP ALA A 99 UNP P00720 LEU 99 ENGINEERED MUTATION SEQADV 4EKP HIS A 102 UNP P00720 MET 102 ENGINEERED MUTATION SEQADV 4EKP VAL A 108 UNP P00720 GLU 108 ENGINEERED MUTATION SEQADV 4EKP VAL A 117 UNP P00720 SER 117 ENGINEERED MUTATION SEQADV 4EKP CYS A 142 UNP P00720 THR 142 ENGINEERED MUTATION SEQADV 4EKP ASP A 144 UNP P00720 ASN 144 ENGINEERED MUTATION SEQADV 4EKP MET B -22 UNP P00720 EXPRESSION TAG SEQADV 4EKP GLY B -21 UNP P00720 EXPRESSION TAG SEQADV 4EKP HIS B -20 UNP P00720 EXPRESSION TAG SEQADV 4EKP HIS B -19 UNP P00720 EXPRESSION TAG SEQADV 4EKP HIS B -18 UNP P00720 EXPRESSION TAG SEQADV 4EKP HIS B -17 UNP P00720 EXPRESSION TAG SEQADV 4EKP HIS B -16 UNP P00720 EXPRESSION TAG SEQADV 4EKP HIS B -15 UNP P00720 EXPRESSION TAG SEQADV 4EKP ASP B -14 UNP P00720 EXPRESSION TAG SEQADV 4EKP TYR B -13 UNP P00720 EXPRESSION TAG SEQADV 4EKP ASP B -12 UNP P00720 EXPRESSION TAG SEQADV 4EKP ILE B -11 UNP P00720 EXPRESSION TAG SEQADV 4EKP PRO B -10 UNP P00720 EXPRESSION TAG SEQADV 4EKP THR B -9 UNP P00720 EXPRESSION TAG SEQADV 4EKP THR B -8 UNP P00720 EXPRESSION TAG SEQADV 4EKP GLU B -7 UNP P00720 EXPRESSION TAG SEQADV 4EKP ASN B -6 UNP P00720 EXPRESSION TAG SEQADV 4EKP LEU B -5 UNP P00720 EXPRESSION TAG SEQADV 4EKP TYR B -4 UNP P00720 EXPRESSION TAG SEQADV 4EKP PHE B -3 UNP P00720 EXPRESSION TAG SEQADV 4EKP GLN B -2 UNP P00720 EXPRESSION TAG SEQADV 4EKP GLY B -1 UNP P00720 EXPRESSION TAG SEQADV 4EKP SER B 0 UNP P00720 EXPRESSION TAG SEQADV 4EKP CYS B 21 UNP P00720 THR 21 ENGINEERED MUTATION SEQADV 4EKP ASP B 38 UNP P00720 SER 38 ENGINEERED MUTATION SEQADV 4EKP ALA B 99 UNP P00720 LEU 99 ENGINEERED MUTATION SEQADV 4EKP HIS B 102 UNP P00720 MET 102 ENGINEERED MUTATION SEQADV 4EKP VAL B 108 UNP P00720 GLU 108 ENGINEERED MUTATION SEQADV 4EKP VAL B 117 UNP P00720 SER 117 ENGINEERED MUTATION SEQADV 4EKP CYS B 142 UNP P00720 THR 142 ENGINEERED MUTATION SEQADV 4EKP ASP B 144 UNP P00720 ASN 144 ENGINEERED MUTATION SEQRES 1 A 187 MET GLY HIS HIS HIS HIS HIS HIS ASP TYR ASP ILE PRO SEQRES 2 A 187 THR THR GLU ASN LEU TYR PHE GLN GLY SER MET ASN ILE SEQRES 3 A 187 PHE GLU MET LEU ARG ILE ASP GLU GLY LEU ARG LEU LYS SEQRES 4 A 187 ILE TYR LYS ASP CYS GLU GLY TYR TYR THR ILE GLY ILE SEQRES 5 A 187 GLY HIS LEU LEU THR LYS SER PRO ASP LEU ASN ALA ALA SEQRES 6 A 187 LYS SER GLU LEU ASP LYS ALA ILE GLY ARG ASN CYS ASN SEQRES 7 A 187 GLY VAL ILE THR LYS ASP GLU ALA GLU LYS LEU PHE ASN SEQRES 8 A 187 GLN ASP VAL ASP ALA ALA VAL ARG GLY ILE LEU ARG ASN SEQRES 9 A 187 ALA LYS LEU LYS PRO VAL TYR ASP SER LEU ASP ALA VAL SEQRES 10 A 187 ARG ARG CYS ALA ALA ILE ASN HIS VAL PHE GLN MET GLY SEQRES 11 A 187 VAL THR GLY VAL ALA GLY PHE THR ASN VAL LEU ARG MET SEQRES 12 A 187 LEU GLN GLN LYS ARG TRP ASP GLU ALA ALA VAL ASN LEU SEQRES 13 A 187 ALA LYS SER ARG TRP TYR ASN GLN CYS PRO ASP ARG ALA SEQRES 14 A 187 LYS ARG VAL ILE THR THR PHE ARG THR GLY THR TRP ASP SEQRES 15 A 187 ALA TYR LYS ASN LEU SEQRES 1 B 187 MET GLY HIS HIS HIS HIS HIS HIS ASP TYR ASP ILE PRO SEQRES 2 B 187 THR THR GLU ASN LEU TYR PHE GLN GLY SER MET ASN ILE SEQRES 3 B 187 PHE GLU MET LEU ARG ILE ASP GLU GLY LEU ARG LEU LYS SEQRES 4 B 187 ILE TYR LYS ASP CYS GLU GLY TYR TYR THR ILE GLY ILE SEQRES 5 B 187 GLY HIS LEU LEU THR LYS SER PRO ASP LEU ASN ALA ALA SEQRES 6 B 187 LYS SER GLU LEU ASP LYS ALA ILE GLY ARG ASN CYS ASN SEQRES 7 B 187 GLY VAL ILE THR LYS ASP GLU ALA GLU LYS LEU PHE ASN SEQRES 8 B 187 GLN ASP VAL ASP ALA ALA VAL ARG GLY ILE LEU ARG ASN SEQRES 9 B 187 ALA LYS LEU LYS PRO VAL TYR ASP SER LEU ASP ALA VAL SEQRES 10 B 187 ARG ARG CYS ALA ALA ILE ASN HIS VAL PHE GLN MET GLY SEQRES 11 B 187 VAL THR GLY VAL ALA GLY PHE THR ASN VAL LEU ARG MET SEQRES 12 B 187 LEU GLN GLN LYS ARG TRP ASP GLU ALA ALA VAL ASN LEU SEQRES 13 B 187 ALA LYS SER ARG TRP TYR ASN GLN CYS PRO ASP ARG ALA SEQRES 14 B 187 LYS ARG VAL ILE THR THR PHE ARG THR GLY THR TRP ASP SEQRES 15 B 187 ALA TYR LYS ASN LEU HET BME A 201 4 HET NBZ A 202 9 HET SO4 A 203 5 HET SO4 A 204 5 HET SO4 A 205 5 HET ACT A 206 4 HET BME A 207 4 HET ACT A 208 4 HET BME B 201 4 HET NBZ B 202 9 HET SO4 B 203 5 HET SO4 B 204 5 HET ACT B 205 4 HET BME B 206 4 HET HED B 207 8 HETNAM BME BETA-MERCAPTOETHANOL HETNAM NBZ NITROBENZENE HETNAM SO4 SULFATE ION HETNAM ACT ACETATE ION HETNAM HED 2-HYDROXYETHYL DISULFIDE FORMUL 3 BME 4(C2 H6 O S) FORMUL 4 NBZ 2(C6 H5 N O2) FORMUL 5 SO4 5(O4 S 2-) FORMUL 8 ACT 3(C2 H3 O2 1-) FORMUL 17 HED C4 H10 O2 S2 FORMUL 18 HOH *336(H2 O) HELIX 1 1 THR A -9 MET A 1 1 11 HELIX 2 2 ASN A 2 GLY A 12 1 11 HELIX 3 3 ASP A 38 GLY A 51 1 14 HELIX 4 4 THR A 59 ARG A 80 1 22 HELIX 5 5 LYS A 83 LEU A 91 1 9 HELIX 6 6 ASP A 92 GLY A 107 1 16 HELIX 7 7 GLY A 107 GLY A 113 1 7 HELIX 8 8 PHE A 114 GLN A 123 1 10 HELIX 9 9 ARG A 125 ALA A 134 1 10 HELIX 10 10 SER A 136 CYS A 142 1 7 HELIX 11 11 CYS A 142 GLY A 156 1 15 HELIX 12 12 TRP A 158 LYS A 162 5 5 HELIX 13 13 THR B -8 MET B 1 1 10 HELIX 14 14 ASN B 2 GLY B 12 1 11 HELIX 15 15 ASP B 38 GLY B 51 1 14 HELIX 16 16 THR B 59 ARG B 80 1 22 HELIX 17 17 LYS B 83 LEU B 91 1 9 HELIX 18 18 ASP B 92 GLY B 107 1 16 HELIX 19 19 GLY B 107 GLY B 113 1 7 HELIX 20 20 PHE B 114 GLN B 123 1 10 HELIX 21 21 ARG B 125 ALA B 134 1 10 HELIX 22 22 SER B 136 CYS B 142 1 7 HELIX 23 23 CYS B 142 GLY B 156 1 15 HELIX 24 24 TRP B 158 LYS B 162 5 5 SHEET 1 A 3 ARG A 14 LYS A 19 0 SHEET 2 A 3 TYR A 25 GLY A 28 -1 O THR A 26 N TYR A 18 SHEET 3 A 3 HIS A 31 LEU A 32 -1 O HIS A 31 N ILE A 27 SHEET 1 B 3 ARG B 14 LYS B 19 0 SHEET 2 B 3 TYR B 25 GLY B 28 -1 O THR B 26 N TYR B 18 SHEET 3 B 3 HIS B 31 LEU B 32 -1 O HIS B 31 N ILE B 27 SSBOND 1 CYS A 21 CYS A 142 1555 1555 2.03 SSBOND 2 CYS B 21 CYS B 142 1555 1555 2.04 LINK SG CYS A 97 S2 BME A 201 1555 1555 2.07 LINK SG CYS B 97 S2 BME B 201 1555 1555 2.07 SITE 1 AC1 8 ILE A 3 TYR A 88 ALA A 93 ARG A 96 SITE 2 AC1 8 CYS A 97 ILE A 100 HOH A 351 HOH A 436 SITE 1 AC2 10 ILE A 78 LEU A 84 VAL A 87 TYR A 88 SITE 2 AC2 10 ALA A 99 HIS A 102 VAL A 111 LEU A 118 SITE 3 AC2 10 LEU A 121 PHE A 153 SITE 1 AC3 5 ARG A 14 LEU A 15 LYS A 16 HOH A 319 SITE 2 AC3 5 HOH A 423 SITE 1 AC4 4 ARG A 76 ARG A 80 HOH A 414 LYS B 135 SITE 1 AC5 3 ARG A 119 ARG A 125 LYS B 48 SITE 1 AC6 3 GLU A 5 HOH A 468 HOH B 402 SITE 1 AC7 6 PHE A -3 TYR A 161 HOH A 308 HOH A 470 SITE 2 AC7 6 ASN B 55 HOH B 336 SITE 1 AC8 5 LYS A 135 ARG B 76 ARG B 80 SO4 B 203 SITE 2 AC8 5 HOH B 392 SITE 1 AC9 3 ILE B 3 CYS B 97 HOH B 351 SITE 1 BC1 9 ILE B 78 LEU B 84 VAL B 87 TYR B 88 SITE 2 BC1 9 ALA B 99 HIS B 102 VAL B 111 LEU B 121 SITE 3 BC1 9 PHE B 153 SITE 1 BC2 4 ACT A 208 ARG B 76 ARG B 80 HOH B 346 SITE 1 BC3 3 ARG B 119 MET B 120 ARG B 125 SITE 1 BC4 3 LEU B 15 LYS B 16 HOH B 433 SITE 1 BC5 7 GLY B 30 LEU B 32 ASP B 70 PHE B 104 SITE 2 BC5 7 HOH B 331 HOH B 343 HOH B 450 SITE 1 BC6 7 THR A 109 HOH A 367 ALA B 130 THR B 151 SITE 2 BC6 7 ARG B 154 HOH B 368 HOH B 432 CRYST1 48.370 75.530 52.720 90.00 93.22 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020674 0.000000 0.001163 0.00000 SCALE2 0.000000 0.013240 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018998 0.00000