HEADER TOXIN/ISOMERASE 11-APR-12 4ELY TITLE CCDBVFI:GYRA14EC COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA GYRASE SUBUNIT A; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 363-497; COMPND 5 SYNONYM: GYRA14; COMPND 6 EC: 5.99.1.3; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: CCDB; COMPND 10 CHAIN: C, D; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SHIGELLA FLEXNERI; SOURCE 3 ORGANISM_TAXID: 623; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: GYRA, GYRASE, S2444, SF2311; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET15B; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: ALIIVIBRIO FISCHERI; SOURCE 13 ORGANISM_TAXID: 668; SOURCE 14 GENE: CCDB; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 17 EXPRESSION_SYSTEM_STRAIN: B462; SOURCE 18 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 19 EXPRESSION_SYSTEM_PLASMID: PKK223-3 KEYWDS ALPHA+BETA, TOPOISOMERASE, TOXIN-ISOMERASE COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR N.DE JONGE,R.SIMIC,L.BUTS,S.HAESAERTS,K.ROELANTS,A.GARCIA-PINO, AUTHOR 2 Y.STERCKX,H.DE GREVE,J.LAH,R.LORIS REVDAT 3 13-SEP-23 4ELY 1 REMARK SEQADV REVDAT 2 02-JAN-13 4ELY 1 JRNL REVDAT 1 30-MAY-12 4ELY 0 SPRSDE 30-MAY-12 4ELY 3KU8 JRNL AUTH N.DE JONGE,M.SIMIC,L.BUTS,S.HAESAERTS,K.ROELANTS, JRNL AUTH 2 A.GARCIA-PINO,Y.STERCKX,H.DE GREVE,J.LAH,R.LORIS JRNL TITL ALTERNATIVE INTERACTIONS DEFINE GYRASE SPECIFICITY IN THE JRNL TITL 2 CCDB FAMILY. JRNL REF MOL.MICROBIOL. V. 84 965 2012 JRNL REFN ISSN 0950-382X JRNL PMID 22582791 JRNL DOI 10.1111/J.1365-2958.2012.08069.X REMARK 2 REMARK 2 RESOLUTION. 1.93 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.3_928) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.93 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.62 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 48849 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 2469 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 24.6255 - 5.0500 0.99 2667 120 0.1943 0.2024 REMARK 3 2 5.0500 - 4.0139 1.00 2604 152 0.1491 0.1824 REMARK 3 3 4.0139 - 3.5082 1.00 2628 140 0.1807 0.1873 REMARK 3 4 3.5082 - 3.1882 1.00 2580 155 0.1977 0.2370 REMARK 3 5 3.1882 - 2.9601 1.00 2632 133 0.2061 0.2780 REMARK 3 6 2.9601 - 2.7858 1.00 2600 129 0.2052 0.2482 REMARK 3 7 2.7858 - 2.6464 1.00 2594 127 0.1996 0.2519 REMARK 3 8 2.6464 - 2.5314 1.00 2629 143 0.1999 0.2223 REMARK 3 9 2.5314 - 2.4340 1.00 2599 138 0.1977 0.2343 REMARK 3 10 2.4340 - 2.3501 1.00 2604 129 0.1891 0.2405 REMARK 3 11 2.3501 - 2.2767 1.00 2597 150 0.1846 0.2296 REMARK 3 12 2.2767 - 2.2116 1.00 2563 149 0.1748 0.2283 REMARK 3 13 2.2116 - 2.1534 1.00 2605 129 0.1698 0.1932 REMARK 3 14 2.1534 - 2.1009 1.00 2599 164 0.1748 0.1945 REMARK 3 15 2.1009 - 2.0532 1.00 2590 132 0.1857 0.2566 REMARK 3 16 2.0532 - 2.0095 1.00 2584 137 0.1909 0.2220 REMARK 3 17 2.0095 - 1.9693 1.00 2605 137 0.1990 0.2375 REMARK 3 18 1.9693 - 1.9322 0.82 2100 105 0.2129 0.2578 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.98 REMARK 3 K_SOL : 0.37 REMARK 3 B_SOL : 63.56 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.410 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.56090 REMARK 3 B22 (A**2) : -5.52030 REMARK 3 B33 (A**2) : 4.95940 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -2.86230 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 3715 REMARK 3 ANGLE : 1.066 5073 REMARK 3 CHIRALITY : 0.070 611 REMARK 3 PLANARITY : 0.005 657 REMARK 3 DIHEDRAL : 15.083 1372 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND RESSEQ 363:497 REMARK 3 ORIGIN FOR THE GROUP (A): 8.4582 32.3798 26.5155 REMARK 3 T TENSOR REMARK 3 T11: 0.2241 T22: 0.1092 REMARK 3 T33: 0.1799 T12: 0.0713 REMARK 3 T13: -0.0007 T23: 0.0012 REMARK 3 L TENSOR REMARK 3 L11: 1.8965 L22: 3.6594 REMARK 3 L33: 1.6590 L12: 0.0157 REMARK 3 L13: 0.1719 L23: 0.5886 REMARK 3 S TENSOR REMARK 3 S11: 0.1046 S12: 0.2555 S13: -0.1067 REMARK 3 S21: -0.4394 S22: -0.1773 S23: -0.1501 REMARK 3 S31: 0.1968 S32: 0.1590 S33: 0.0421 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B AND RESSEQ 363:497 REMARK 3 ORIGIN FOR THE GROUP (A): 2.2497 55.8656 50.7363 REMARK 3 T TENSOR REMARK 3 T11: 0.1322 T22: 0.0847 REMARK 3 T33: 0.1050 T12: -0.0793 REMARK 3 T13: -0.0259 T23: -0.0992 REMARK 3 L TENSOR REMARK 3 L11: 1.4117 L22: 2.3789 REMARK 3 L33: 1.9781 L12: -0.2198 REMARK 3 L13: -0.2825 L23: 0.5455 REMARK 3 S TENSOR REMARK 3 S11: 0.0451 S12: -0.3561 S13: 0.2158 REMARK 3 S21: 0.4750 S22: -0.1415 S23: 0.0339 REMARK 3 S31: -0.1270 S32: -0.0729 S33: 0.0091 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN C AND RESSEQ 2:105 REMARK 3 ORIGIN FOR THE GROUP (A): 27.1948 53.4375 38.2938 REMARK 3 T TENSOR REMARK 3 T11: 0.2618 T22: 0.3248 REMARK 3 T33: 0.3121 T12: -0.0957 REMARK 3 T13: -0.0347 T23: 0.1306 REMARK 3 L TENSOR REMARK 3 L11: 2.8688 L22: 3.8173 REMARK 3 L33: 2.6243 L12: 0.8497 REMARK 3 L13: -0.2944 L23: 0.0004 REMARK 3 S TENSOR REMARK 3 S11: 0.1029 S12: -0.1011 S13: 0.1114 REMARK 3 S21: 0.0040 S22: -0.1565 S23: -0.3347 REMARK 3 S31: -0.3012 S32: 0.4863 S33: 0.0488 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN D AND RESSEQ 2:105 REMARK 3 ORIGIN FOR THE GROUP (A): 25.2436 35.2850 48.5807 REMARK 3 T TENSOR REMARK 3 T11: 0.3267 T22: 0.3670 REMARK 3 T33: 0.3561 T12: -0.0117 REMARK 3 T13: -0.0667 T23: 0.1862 REMARK 3 L TENSOR REMARK 3 L11: 2.3553 L22: 3.7401 REMARK 3 L33: 2.6743 L12: -0.8421 REMARK 3 L13: -0.0391 L23: -0.4387 REMARK 3 S TENSOR REMARK 3 S11: 0.0080 S12: -0.4434 S13: -0.2971 REMARK 3 S21: 0.3510 S22: -0.0370 S23: -0.1097 REMARK 3 S31: 0.3679 S32: 0.3697 S33: 0.0371 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4ELY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-APR-12. REMARK 100 THE DEPOSITION ID IS D_1000071784. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-DEC-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.933 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48855 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.930 REMARK 200 RESOLUTION RANGE LOW (A) : 74.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 8.990 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : 0.05000 REMARK 200 FOR THE DATA SET : 19.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.93 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.02 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.99 REMARK 200 R MERGE FOR SHELL (I) : 0.24700 REMARK 200 R SYM FOR SHELL (I) : 0.24700 REMARK 200 FOR SHELL : 9.120 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRIES 3JSC AND 1X75 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.85 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50MM MES, 1.6M (NH4)2SO4, 50MM MGCL2, REMARK 280 PH 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 65.03650 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.41650 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 65.03650 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 45.41650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6660 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21070 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -51.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 669 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 342 REMARK 465 GLY A 343 REMARK 465 SER A 344 REMARK 465 SER A 345 REMARK 465 HIS A 346 REMARK 465 HIS A 347 REMARK 465 HIS A 348 REMARK 465 HIS A 349 REMARK 465 HIS A 350 REMARK 465 HIS A 351 REMARK 465 SER A 352 REMARK 465 SER A 353 REMARK 465 GLY A 354 REMARK 465 LEU A 355 REMARK 465 VAL A 356 REMARK 465 PRO A 357 REMARK 465 ARG A 358 REMARK 465 GLY A 359 REMARK 465 SER A 360 REMARK 465 HIS A 361 REMARK 465 MET A 362 REMARK 465 MET B 342 REMARK 465 GLY B 343 REMARK 465 SER B 344 REMARK 465 SER B 345 REMARK 465 HIS B 346 REMARK 465 HIS B 347 REMARK 465 HIS B 348 REMARK 465 HIS B 349 REMARK 465 HIS B 350 REMARK 465 HIS B 351 REMARK 465 SER B 352 REMARK 465 SER B 353 REMARK 465 GLY B 354 REMARK 465 LEU B 355 REMARK 465 VAL B 356 REMARK 465 PRO B 357 REMARK 465 ARG B 358 REMARK 465 GLY B 359 REMARK 465 SER B 360 REMARK 465 HIS B 361 REMARK 465 MET B 362 REMARK 465 MET C 1 REMARK 465 LEU C 45 REMARK 465 LEU C 46 REMARK 465 ASP C 47 REMARK 465 LYS C 48 REMARK 465 LYS C 49 REMARK 465 ALA C 50 REMARK 465 MET D 1 REMARK 465 LEU D 45 REMARK 465 LEU D 46 REMARK 465 ASP D 47 REMARK 465 LYS D 48 REMARK 465 LYS D 49 REMARK 465 ALA D 50 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 364 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 365 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 369 OE1 OE2 REMARK 470 LYS A 372 CD CE NZ REMARK 470 HIS A 399 CG ND1 CD2 CE1 NE2 REMARK 470 GLU A 480 CG CD OE1 OE2 REMARK 470 GLU A 487 CD OE1 OE2 REMARK 470 ARG A 490 CD NE CZ NH1 NH2 REMARK 470 ARG A 497 CA C O CB CG CD NE REMARK 470 ARG A 497 CZ NH1 NH2 REMARK 470 ARG B 364 CB CG CD NE CZ NH1 NH2 REMARK 470 ARG B 365 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 372 CD CE NZ REMARK 470 GLU B 480 CG CD OE1 OE2 REMARK 470 ARG B 497 CA C O CB CG CD NE REMARK 470 ARG B 497 CZ NH1 NH2 REMARK 470 LYS C 12 CG CD CE NZ REMARK 470 LYS C 16 NZ REMARK 470 LYS C 78 CG CD CE NZ REMARK 470 GLU C 82 CG CD OE1 OE2 REMARK 470 LYS D 12 CB CG CD CE NZ REMARK 470 LYS D 16 CG CD CE NZ REMARK 470 LYS D 78 CD CE NZ REMARK 470 GLU D 82 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU C 86 OG SER C 88 2.10 REMARK 500 CL CL D 201 O HOH D 319 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 364 -49.59 65.69 REMARK 500 ILE A 491 -5.99 -58.57 REMARK 500 ARG B 365 -16.93 -150.85 REMARK 500 SER B 494 148.92 65.91 REMARK 500 ILE D 43 9.15 -68.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL D 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3JSC RELATED DB: PDB REMARK 900 CCDBVFI-FORMI-PH7.0 REMARK 900 RELATED ID: 3JRZ RELATED DB: PDB REMARK 900 CCDBVFI-FORMII-PH5.6 REMARK 900 RELATED ID: 4ELZ RELATED DB: PDB DBREF 4ELY A 363 497 UNP P0AES5 GYRA_SHIFL 363 497 DBREF 4ELY B 363 497 UNP P0AES5 GYRA_SHIFL 363 497 DBREF 4ELY C 1 105 UNP Q84B82 Q84B82_VIBFI 1 105 DBREF 4ELY D 1 105 UNP Q84B82 Q84B82_VIBFI 1 105 SEQADV 4ELY MET A 342 UNP P0AES5 INITIATING METHIONINE SEQADV 4ELY GLY A 343 UNP P0AES5 EXPRESSION TAG SEQADV 4ELY SER A 344 UNP P0AES5 EXPRESSION TAG SEQADV 4ELY SER A 345 UNP P0AES5 EXPRESSION TAG SEQADV 4ELY HIS A 346 UNP P0AES5 EXPRESSION TAG SEQADV 4ELY HIS A 347 UNP P0AES5 EXPRESSION TAG SEQADV 4ELY HIS A 348 UNP P0AES5 EXPRESSION TAG SEQADV 4ELY HIS A 349 UNP P0AES5 EXPRESSION TAG SEQADV 4ELY HIS A 350 UNP P0AES5 EXPRESSION TAG SEQADV 4ELY HIS A 351 UNP P0AES5 EXPRESSION TAG SEQADV 4ELY SER A 352 UNP P0AES5 EXPRESSION TAG SEQADV 4ELY SER A 353 UNP P0AES5 EXPRESSION TAG SEQADV 4ELY GLY A 354 UNP P0AES5 EXPRESSION TAG SEQADV 4ELY LEU A 355 UNP P0AES5 EXPRESSION TAG SEQADV 4ELY VAL A 356 UNP P0AES5 EXPRESSION TAG SEQADV 4ELY PRO A 357 UNP P0AES5 EXPRESSION TAG SEQADV 4ELY ARG A 358 UNP P0AES5 EXPRESSION TAG SEQADV 4ELY GLY A 359 UNP P0AES5 EXPRESSION TAG SEQADV 4ELY SER A 360 UNP P0AES5 EXPRESSION TAG SEQADV 4ELY HIS A 361 UNP P0AES5 EXPRESSION TAG SEQADV 4ELY MET A 362 UNP P0AES5 EXPRESSION TAG SEQADV 4ELY MET B 342 UNP P0AES5 INITIATING METHIONINE SEQADV 4ELY GLY B 343 UNP P0AES5 EXPRESSION TAG SEQADV 4ELY SER B 344 UNP P0AES5 EXPRESSION TAG SEQADV 4ELY SER B 345 UNP P0AES5 EXPRESSION TAG SEQADV 4ELY HIS B 346 UNP P0AES5 EXPRESSION TAG SEQADV 4ELY HIS B 347 UNP P0AES5 EXPRESSION TAG SEQADV 4ELY HIS B 348 UNP P0AES5 EXPRESSION TAG SEQADV 4ELY HIS B 349 UNP P0AES5 EXPRESSION TAG SEQADV 4ELY HIS B 350 UNP P0AES5 EXPRESSION TAG SEQADV 4ELY HIS B 351 UNP P0AES5 EXPRESSION TAG SEQADV 4ELY SER B 352 UNP P0AES5 EXPRESSION TAG SEQADV 4ELY SER B 353 UNP P0AES5 EXPRESSION TAG SEQADV 4ELY GLY B 354 UNP P0AES5 EXPRESSION TAG SEQADV 4ELY LEU B 355 UNP P0AES5 EXPRESSION TAG SEQADV 4ELY VAL B 356 UNP P0AES5 EXPRESSION TAG SEQADV 4ELY PRO B 357 UNP P0AES5 EXPRESSION TAG SEQADV 4ELY ARG B 358 UNP P0AES5 EXPRESSION TAG SEQADV 4ELY GLY B 359 UNP P0AES5 EXPRESSION TAG SEQADV 4ELY SER B 360 UNP P0AES5 EXPRESSION TAG SEQADV 4ELY HIS B 361 UNP P0AES5 EXPRESSION TAG SEQADV 4ELY MET B 362 UNP P0AES5 EXPRESSION TAG SEQRES 1 A 156 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 156 LEU VAL PRO ARG GLY SER HIS MET THR ARG ARG THR ILE SEQRES 3 A 156 PHE GLU LEU ARG LYS ALA ARG ASP ARG ALA HIS ILE LEU SEQRES 4 A 156 GLU ALA LEU ALA VAL ALA LEU ALA ASN ILE ASP PRO ILE SEQRES 5 A 156 ILE GLU LEU ILE ARG HIS ALA PRO THR PRO ALA GLU ALA SEQRES 6 A 156 LYS THR ALA LEU VAL ALA ASN PRO TRP GLN LEU GLY ASN SEQRES 7 A 156 VAL ALA ALA MET LEU GLU ARG ALA GLY ASP ASP ALA ALA SEQRES 8 A 156 ARG PRO GLU TRP LEU GLU PRO GLU PHE GLY VAL ARG ASP SEQRES 9 A 156 GLY LEU TYR TYR LEU THR GLU GLN GLN ALA GLN ALA ILE SEQRES 10 A 156 LEU ASP LEU ARG LEU GLN LYS LEU THR GLY LEU GLU HIS SEQRES 11 A 156 GLU LYS LEU LEU ASP GLU TYR LYS GLU LEU LEU ASP GLN SEQRES 12 A 156 ILE ALA GLU LEU LEU ARG ILE LEU GLY SER ALA ASP ARG SEQRES 1 B 156 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 156 LEU VAL PRO ARG GLY SER HIS MET THR ARG ARG THR ILE SEQRES 3 B 156 PHE GLU LEU ARG LYS ALA ARG ASP ARG ALA HIS ILE LEU SEQRES 4 B 156 GLU ALA LEU ALA VAL ALA LEU ALA ASN ILE ASP PRO ILE SEQRES 5 B 156 ILE GLU LEU ILE ARG HIS ALA PRO THR PRO ALA GLU ALA SEQRES 6 B 156 LYS THR ALA LEU VAL ALA ASN PRO TRP GLN LEU GLY ASN SEQRES 7 B 156 VAL ALA ALA MET LEU GLU ARG ALA GLY ASP ASP ALA ALA SEQRES 8 B 156 ARG PRO GLU TRP LEU GLU PRO GLU PHE GLY VAL ARG ASP SEQRES 9 B 156 GLY LEU TYR TYR LEU THR GLU GLN GLN ALA GLN ALA ILE SEQRES 10 B 156 LEU ASP LEU ARG LEU GLN LYS LEU THR GLY LEU GLU HIS SEQRES 11 B 156 GLU LYS LEU LEU ASP GLU TYR LYS GLU LEU LEU ASP GLN SEQRES 12 B 156 ILE ALA GLU LEU LEU ARG ILE LEU GLY SER ALA ASP ARG SEQRES 1 C 105 MET SER GLN PHE THR LEU TYR LYS ASN LYS ASP LYS SER SEQRES 2 C 105 SER ALA LYS THR TYR PRO TYR PHE VAL ASP VAL GLN SER SEQRES 3 C 105 ASP LEU LEU ASP ASN LEU ASN THR ARG LEU VAL ILE PRO SEQRES 4 C 105 LEU THR PRO ILE GLU LEU LEU ASP LYS LYS ALA PRO SER SEQRES 5 C 105 HIS LEU CYS PRO THR ILE HIS ILE ASP GLU GLY ASP PHE SEQRES 6 C 105 ILE MET LEU THR GLN GLN MET THR SER VAL PRO VAL LYS SEQRES 7 C 105 ILE LEU SER GLU PRO VAL ASN GLU LEU SER THR PHE ARG SEQRES 8 C 105 ASN GLU ILE ILE ALA ALA ILE ASP PHE LEU ILE THR GLY SEQRES 9 C 105 ILE SEQRES 1 D 105 MET SER GLN PHE THR LEU TYR LYS ASN LYS ASP LYS SER SEQRES 2 D 105 SER ALA LYS THR TYR PRO TYR PHE VAL ASP VAL GLN SER SEQRES 3 D 105 ASP LEU LEU ASP ASN LEU ASN THR ARG LEU VAL ILE PRO SEQRES 4 D 105 LEU THR PRO ILE GLU LEU LEU ASP LYS LYS ALA PRO SER SEQRES 5 D 105 HIS LEU CYS PRO THR ILE HIS ILE ASP GLU GLY ASP PHE SEQRES 6 D 105 ILE MET LEU THR GLN GLN MET THR SER VAL PRO VAL LYS SEQRES 7 D 105 ILE LEU SER GLU PRO VAL ASN GLU LEU SER THR PHE ARG SEQRES 8 D 105 ASN GLU ILE ILE ALA ALA ILE ASP PHE LEU ILE THR GLY SEQRES 9 D 105 ILE HET SO4 A 501 5 HET CL A 502 1 HET CL D 201 1 HETNAM SO4 SULFATE ION HETNAM CL CHLORIDE ION FORMUL 5 SO4 O4 S 2- FORMUL 6 CL 2(CL 1-) FORMUL 8 HOH *256(H2 O) HELIX 1 1 ARG A 364 ASN A 389 1 26 HELIX 2 2 ASN A 389 ALA A 400 1 12 HELIX 3 3 THR A 402 ASN A 413 1 12 HELIX 4 4 ASN A 419 GLU A 425 1 7 HELIX 5 5 THR A 451 ASP A 460 1 10 HELIX 6 6 ARG A 462 LEU A 466 5 5 HELIX 7 7 THR A 467 ILE A 491 1 25 HELIX 8 8 ARG B 365 ASN B 389 1 25 HELIX 9 9 ASN B 389 ALA B 400 1 12 HELIX 10 10 THR B 402 ASN B 413 1 12 HELIX 11 11 ASN B 419 LEU B 424 1 6 HELIX 12 12 GLU B 425 ALA B 427 5 3 HELIX 13 13 THR B 451 ASP B 460 1 10 HELIX 14 14 ARG B 462 LEU B 466 5 5 HELIX 15 15 THR B 467 LEU B 492 1 26 HELIX 16 16 ASP C 11 LYS C 16 1 6 HELIX 17 17 SER C 26 ASP C 30 5 5 HELIX 18 18 THR C 69 MET C 72 5 4 HELIX 19 19 LYS C 78 LEU C 80 5 3 HELIX 20 20 PHE C 90 GLY C 104 1 15 HELIX 21 21 SER D 26 ASP D 30 5 5 HELIX 22 22 THR D 69 MET D 72 5 4 HELIX 23 23 LYS D 78 LEU D 80 5 3 HELIX 24 24 PHE D 90 GLY D 104 1 15 SHEET 1 A 3 TRP A 415 GLN A 416 0 SHEET 2 A 3 LEU A 447 TYR A 449 -1 O TYR A 448 N TRP A 415 SHEET 3 A 3 GLY A 442 ARG A 444 -1 N ARG A 444 O LEU A 447 SHEET 1 B 3 TRP B 415 GLN B 416 0 SHEET 2 B 3 LEU B 447 TYR B 449 -1 O TYR B 448 N TRP B 415 SHEET 3 B 3 GLY B 442 ARG B 444 -1 N ARG B 444 O LEU B 447 SHEET 1 C 4 THR C 57 ILE C 60 0 SHEET 2 C 4 GLY C 63 MET C 67 -1 O PHE C 65 N ILE C 58 SHEET 3 C 4 THR C 34 PRO C 42 -1 N THR C 41 O ILE C 66 SHEET 4 C 4 THR C 73 PRO C 76 -1 O THR C 73 N VAL C 37 SHEET 1 D 6 THR C 57 ILE C 60 0 SHEET 2 D 6 GLY C 63 MET C 67 -1 O PHE C 65 N ILE C 58 SHEET 3 D 6 THR C 34 PRO C 42 -1 N THR C 41 O ILE C 66 SHEET 4 D 6 TYR C 20 ASP C 23 -1 N TYR C 20 O LEU C 40 SHEET 5 D 6 THR C 5 LYS C 8 -1 N TYR C 7 O PHE C 21 SHEET 6 D 6 PRO C 83 GLU C 86 -1 O VAL C 84 N LEU C 6 SHEET 1 E 4 THR D 57 ILE D 60 0 SHEET 2 E 4 GLY D 63 MET D 67 -1 O PHE D 65 N ILE D 58 SHEET 3 E 4 THR D 34 PRO D 42 -1 N THR D 41 O ILE D 66 SHEET 4 E 4 THR D 73 PRO D 76 -1 O THR D 73 N VAL D 37 SHEET 1 F 6 THR D 57 ILE D 60 0 SHEET 2 F 6 GLY D 63 MET D 67 -1 O PHE D 65 N ILE D 58 SHEET 3 F 6 THR D 34 PRO D 42 -1 N THR D 41 O ILE D 66 SHEET 4 F 6 TYR D 20 ASP D 23 -1 N TYR D 20 O LEU D 40 SHEET 5 F 6 THR D 5 LYS D 8 -1 N TYR D 7 O PHE D 21 SHEET 6 F 6 PRO D 83 GLU D 86 -1 O ASN D 85 N LEU D 6 CISPEP 1 LEU A 492 GLY A 493 0 -6.62 CISPEP 2 GLY B 493 SER B 494 0 6.39 SITE 1 AC1 6 ARG A 371 HOH A 686 ILE C 60 ASP C 61 SITE 2 AC1 6 ASN C 85 HOH C 218 SITE 1 AC2 1 ARG A 444 SITE 1 AC3 2 ARG B 371 HOH D 319 CRYST1 130.073 90.833 58.130 90.00 102.59 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007688 0.000000 0.001717 0.00000 SCALE2 0.000000 0.011009 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017627 0.00000