HEADER OXIDOREDUCTASE 12-APR-12 4EMJ TITLE COMPLEX BETWEEN THE REDUCTASE AND FERREDOXIN COMPONENTS OF TOLUENE TITLE 2 DIOXYGENASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TODA; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: TOLUENE DIOXYGENASE REDUCTASE TOBA, TOLUENE DIOXYGENASE COMPND 5 REDUCTASE COMPONENT; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: TOLUENE 1,2-DIOXYGENASE SYSTEM FERREDOXIN SUBUNIT; COMPND 9 CHAIN: B; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS PUTIDA; SOURCE 3 ORGANISM_TAXID: 303; SOURCE 4 STRAIN: F1; SOURCE 5 GENE: TOBA, TODA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: PSEUDOMONAS PUTIDA; SOURCE 10 ORGANISM_TAXID: 303; SOURCE 11 STRAIN: F1; SOURCE 12 GENE: TODB; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS OXIDOREDUCTASE COMPLEX, TOLUENE DIOXYGENASE OXYGENASE COMPONENT, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR T.Y.LIN,T.WERTHER,J.H.JEOUNG,H.DOBBEK REVDAT 4 28-FEB-24 4EMJ 1 REMARK LINK REVDAT 3 15-NOV-17 4EMJ 1 REMARK REVDAT 2 21-NOV-12 4EMJ 1 JRNL REVDAT 1 26-SEP-12 4EMJ 0 JRNL AUTH T.Y.LIN,T.WERTHER,J.H.JEOUNG,H.DOBBEK JRNL TITL SUPPRESSION OF ELECTRON TRANSFER TO DIOXYGEN BY CHARGE JRNL TITL 2 TRANSFER AND ELECTRON TRANSFER COMPLEXES IN THE JRNL TITL 3 FAD-DEPENDENT REDUCTASE COMPONENT OF TOLUENE DIOXYGENASE. JRNL REF J.BIOL.CHEM. V. 287 38338 2012 JRNL REFN ISSN 0021-9258 JRNL PMID 22992736 JRNL DOI 10.1074/JBC.M112.374918 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.6.2_432) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : MLHL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.07 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.400 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 19637 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.172 REMARK 3 R VALUE (WORKING SET) : 0.169 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 982 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 30.0748 - 4.5866 0.99 2721 143 0.1629 0.2265 REMARK 3 2 4.5866 - 3.6425 1.00 2669 140 0.1341 0.1785 REMARK 3 3 3.6425 - 3.1827 1.00 2666 141 0.1632 0.2315 REMARK 3 4 3.1827 - 2.8919 1.00 2653 139 0.1730 0.2743 REMARK 3 5 2.8919 - 2.6848 1.00 2667 141 0.1843 0.2447 REMARK 3 6 2.6848 - 2.5266 1.00 2646 139 0.1912 0.2500 REMARK 3 7 2.5266 - 2.4001 1.00 2633 139 0.2266 0.3073 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.33 REMARK 3 B_SOL : 31.70 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.700 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.640 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.11220 REMARK 3 B22 (A**2) : -0.11220 REMARK 3 B33 (A**2) : 0.22440 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.015 3989 REMARK 3 ANGLE : 1.660 5435 REMARK 3 CHIRALITY : 0.137 622 REMARK 3 PLANARITY : 0.007 712 REMARK 3 DIHEDRAL : 15.561 1441 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 39.9004 9.8319 -4.9915 REMARK 3 T TENSOR REMARK 3 T11: 0.0645 T22: 0.1496 REMARK 3 T33: 0.2034 T12: -0.0360 REMARK 3 T13: -0.0067 T23: -0.0031 REMARK 3 L TENSOR REMARK 3 L11: 0.6206 L22: 0.8152 REMARK 3 L33: 1.3473 L12: -0.4446 REMARK 3 L13: -0.3340 L23: 0.2755 REMARK 3 S TENSOR REMARK 3 S11: 0.0119 S12: -0.0916 S13: 0.1831 REMARK 3 S21: 0.0083 S22: 0.0539 S23: -0.2941 REMARK 3 S31: -0.1007 S32: 0.2777 S33: 0.0494 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4EMJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-APR-12. REMARK 100 THE DEPOSITION ID IS D_1000071805. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-JAN-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91841 REMARK 200 MONOCHROMATOR : SI-111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19644 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 33.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% (W/V) POLYETHYLENE GLYCOL REMARK 280 MONOMETHYL ETHER 5,000, PH 6.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 40.28000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 20.14000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 30.21000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 10.07000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 50.35000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 407 REMARK 465 ASP A 408 REMARK 465 LEU A 409 REMARK 465 THR A 410 REMARK 465 MET B 0 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 1 CG SD CE REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HH21 ARG A 110 OE1 GLN A 244 1.30 REMARK 500 H GLN A 120 O HOH A 622 1.55 REMARK 500 HH11 ARG A 390 O HOH A 716 1.58 REMARK 500 NH2 ARG A 110 OE1 GLN A 244 1.94 REMARK 500 O HOH A 805 O HOH A 815 1.98 REMARK 500 O HOH A 635 O HOH A 739 2.02 REMARK 500 O HOH A 649 O HOH A 800 2.10 REMARK 500 O HOH A 664 O HOH A 680 2.17 REMARK 500 O MET A 1 O HOH A 727 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OD2 ASP A 138 O HOH A 676 6554 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 29 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 PRO A 388 C - N - CA ANGL. DEV. = 9.9 DEGREES REMARK 500 TRP B 2 CA - CB - CG ANGL. DEV. = -12.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 2 123.84 -39.50 REMARK 500 LYS A 48 -109.25 -113.64 REMARK 500 ARG A 128 -40.64 -138.14 REMARK 500 LEU A 179 12.23 55.37 REMARK 500 ASP A 254 76.73 -154.92 REMARK 500 ARG A 255 62.60 60.67 REMARK 500 GLU A 290 33.61 73.16 REMARK 500 LYS A 309 51.26 -117.68 REMARK 500 SER A 348 60.81 -105.91 REMARK 500 ALA A 369 67.18 -157.55 REMARK 500 ILE B 5 -59.30 -147.30 REMARK 500 PRO B 23 -82.93 -50.99 REMARK 500 ASP B 32 -9.90 51.62 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES B 201 FE2 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 42 SG REMARK 620 2 FES B 201 S1 107.9 REMARK 620 3 FES B 201 S2 119.7 95.3 REMARK 620 4 CYS B 61 SG 110.9 109.9 111.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FES B 201 FE1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 44 ND1 REMARK 620 2 FES B 201 S1 125.3 REMARK 620 3 FES B 201 S2 111.6 95.6 REMARK 620 4 HIS B 64 ND1 93.4 107.0 127.0 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FES B 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3EF6 RELATED DB: PDB REMARK 900 REDUCTASE COMPONENT REMARK 900 RELATED ID: 3DQY RELATED DB: PDB REMARK 900 FERREDOXIN COMPONENT REMARK 900 RELATED ID: 4EMI RELATED DB: PDB DBREF 4EMJ A 1 410 UNP Q7BPB6 Q7BPB6_PSEPU 1 410 DBREF 4EMJ B 0 106 UNP P0C620 TODB_PSEPU 1 107 SEQRES 1 A 410 MET ALA THR HIS VAL ALA ILE ILE GLY ASN GLY VAL GLY SEQRES 2 A 410 GLY PHE THR THR ALA GLN ALA LEU ARG ALA GLU GLY PHE SEQRES 3 A 410 GLU GLY ARG ILE SER LEU ILE GLY ASP GLU PRO HIS LEU SEQRES 4 A 410 PRO TYR ASP ARG PRO SER LEU SER LYS ALA VAL LEU ASP SEQRES 5 A 410 GLY SER LEU GLU ARG PRO PRO ILE LEU ALA GLU ALA ASP SEQRES 6 A 410 TRP TYR GLY GLU ALA ARG ILE ASP MET LEU THR GLY PRO SEQRES 7 A 410 GLU VAL THR ALA LEU ASP VAL GLN THR ARG THR ILE SER SEQRES 8 A 410 LEU ASP ASP GLY THR THR LEU SER ALA ASP ALA ILE VAL SEQRES 9 A 410 ILE ALA THR GLY SER ARG ALA ARG THR MET ALA LEU PRO SEQRES 10 A 410 GLY SER GLN LEU PRO GLY VAL VAL THR LEU ARG THR TYR SEQRES 11 A 410 GLY ASP VAL GLN VAL LEU ARG ASP SER TRP THR SER ALA SEQRES 12 A 410 THR ARG LEU LEU ILE VAL GLY GLY GLY LEU ILE GLY CYS SEQRES 13 A 410 GLU VAL ALA THR THR ALA ARG LYS LEU GLY LEU SER VAL SEQRES 14 A 410 THR ILE LEU GLU ALA GLY ASP GLU LEU LEU VAL ARG VAL SEQRES 15 A 410 LEU GLY ARG ARG ILE GLY ALA TRP LEU ARG GLY LEU LEU SEQRES 16 A 410 THR GLU LEU GLY VAL GLN VAL GLU LEU GLY THR GLY VAL SEQRES 17 A 410 VAL GLY PHE SER GLY GLU GLY GLN LEU GLU GLN VAL MET SEQRES 18 A 410 ALA SER ASP GLY ARG SER PHE VAL ALA ASP SER ALA LEU SEQRES 19 A 410 ILE CYS VAL GLY ALA GLU PRO ALA ASP GLN LEU ALA ARG SEQRES 20 A 410 GLN ALA GLY LEU ALA CYS ASP ARG GLY VAL ILE VAL ASP SEQRES 21 A 410 HIS CYS GLY ALA THR LEU ALA LYS GLY VAL PHE ALA VAL SEQRES 22 A 410 GLY ASP VAL ALA SER TRP PRO LEU ARG ALA GLY GLY ARG SEQRES 23 A 410 ARG SER LEU GLU THR TYR MET ASN ALA GLN ARG GLN ALA SEQRES 24 A 410 ALA ALA VAL ALA ALA ALA ILE LEU GLY LYS ASN VAL SER SEQRES 25 A 410 ALA PRO GLN LEU PRO VAL SER TRP THR GLU ILE ALA GLY SEQRES 26 A 410 HIS ARG MET GLN MET ALA GLY ASP ILE GLU GLY PRO GLY SEQRES 27 A 410 ASP PHE VAL SER ARG GLY MET PRO GLY SER GLY ALA ALA SEQRES 28 A 410 LEU LEU PHE ARG LEU GLN GLU ARG ARG ILE GLN ALA VAL SEQRES 29 A 410 VAL ALA VAL ASP ALA PRO ARG ASP PHE ALA LEU ALA THR SEQRES 30 A 410 ARG LEU VAL GLU ALA ARG ALA ALA ILE GLU PRO ALA ARG SEQRES 31 A 410 LEU ALA ASP LEU SER ASN SER MET ARG ASP PHE VAL ARG SEQRES 32 A 410 ALA ASN GLU GLY ASP LEU THR SEQRES 1 B 107 MET THR TRP THR TYR ILE LEU ARG GLN GLY ASP LEU PRO SEQRES 2 B 107 PRO GLY GLU MET GLN ARG TYR GLU GLY GLY PRO GLU PRO SEQRES 3 B 107 VAL MET VAL CYS ASN VAL ASP GLY GLU PHE PHE ALA VAL SEQRES 4 B 107 GLN ASP THR CYS THR HIS GLY ASP TRP ALA LEU SER ASP SEQRES 5 B 107 GLY TYR LEU ASP GLY ASP ILE VAL GLU CYS THR LEU HIS SEQRES 6 B 107 PHE GLY LYS PHE CYS VAL ARG THR GLY LYS VAL LYS ALA SEQRES 7 B 107 LEU PRO ALA CYS LYS PRO ILE LYS VAL PHE PRO ILE LYS SEQRES 8 B 107 VAL GLU GLY ASP GLU VAL HIS VAL ASP LEU ASP ASN GLY SEQRES 9 B 107 GLU LEU LYS HET FAD A 501 83 HET FES B 201 4 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM FES FE2/S2 (INORGANIC) CLUSTER FORMUL 3 FAD C27 H33 N9 O15 P2 FORMUL 4 FES FE2 S2 FORMUL 5 HOH *243(H2 O) HELIX 1 1 GLY A 11 GLU A 24 1 14 HELIX 2 2 ARG A 43 LYS A 48 5 6 HELIX 3 3 GLU A 63 ALA A 70 1 8 HELIX 4 4 THR A 129 TRP A 140 1 12 HELIX 5 5 GLY A 152 LEU A 165 1 14 HELIX 6 6 LEU A 179 GLY A 184 1 6 HELIX 7 7 GLY A 184 LEU A 198 1 15 HELIX 8 8 ASP A 243 ALA A 249 1 7 HELIX 9 9 THR A 291 LEU A 307 1 17 HELIX 10 10 ALA A 369 GLU A 381 1 13 HELIX 11 11 GLU A 387 ASP A 393 1 7 HELIX 12 12 SER A 397 GLU A 406 1 10 HELIX 13 13 GLY B 9 LEU B 11 5 3 HELIX 14 14 ALA B 48 GLY B 52 5 5 SHEET 1 A 5 ILE A 72 THR A 76 0 SHEET 2 A 5 ARG A 29 GLY A 34 1 N ILE A 30 O ASP A 73 SHEET 3 A 5 HIS A 4 ILE A 8 1 N ILE A 7 O SER A 31 SHEET 4 A 5 ALA A 102 ILE A 105 1 O VAL A 104 N ILE A 8 SHEET 5 A 5 VAL A 270 ALA A 272 1 O PHE A 271 N ILE A 105 SHEET 1 B 3 VAL A 80 ASP A 84 0 SHEET 2 B 3 THR A 89 LEU A 92 -1 O THR A 89 N ASP A 84 SHEET 3 B 3 THR A 97 SER A 99 -1 O LEU A 98 N ILE A 90 SHEET 1 C 2 SER A 109 ALA A 111 0 SHEET 2 C 2 ALA A 239 PRO A 241 -1 O GLU A 240 N ARG A 110 SHEET 1 D 5 VAL A 124 VAL A 125 0 SHEET 2 D 5 SER A 232 ILE A 235 1 O ALA A 233 N VAL A 125 SHEET 3 D 5 ARG A 145 VAL A 149 1 N LEU A 147 O SER A 232 SHEET 4 D 5 SER A 168 LEU A 172 1 O THR A 170 N ILE A 148 SHEET 5 D 5 GLN A 201 GLU A 203 1 O GLU A 203 N ILE A 171 SHEET 1 E 3 VAL A 208 SER A 212 0 SHEET 2 E 3 GLN A 219 ALA A 222 -1 O GLN A 219 N SER A 212 SHEET 3 E 3 SER A 227 VAL A 229 -1 O PHE A 228 N VAL A 220 SHEET 1 F 3 VAL A 257 ILE A 258 0 SHEET 2 F 3 ALA A 277 PRO A 280 1 O SER A 278 N VAL A 257 SHEET 3 F 3 ARG A 286 ARG A 287 -1 O ARG A 287 N TRP A 279 SHEET 1 G 5 VAL A 318 ILE A 323 0 SHEET 2 G 5 HIS A 326 ALA A 331 -1 O MET A 328 N THR A 321 SHEET 3 G 5 ARG A 360 VAL A 367 -1 O ALA A 366 N GLN A 329 SHEET 4 G 5 ALA A 351 GLN A 357 -1 N ALA A 351 O VAL A 367 SHEET 5 G 5 ASP A 339 GLY A 344 -1 N ASP A 339 O LEU A 356 SHEET 1 H 3 THR B 3 ARG B 7 0 SHEET 2 H 3 GLU B 95 VAL B 98 -1 O VAL B 96 N LEU B 6 SHEET 3 H 3 ILE B 89 GLU B 92 -1 N GLU B 92 O GLU B 95 SHEET 1 I 4 MET B 16 TYR B 19 0 SHEET 2 I 4 VAL B 26 VAL B 31 -1 O VAL B 26 N TYR B 19 SHEET 3 I 4 GLU B 34 GLN B 39 -1 O GLU B 34 N VAL B 31 SHEET 4 I 4 VAL B 86 PHE B 87 -1 O PHE B 87 N ALA B 37 SHEET 1 J 4 TYR B 53 ASP B 55 0 SHEET 2 J 4 ILE B 58 GLU B 60 -1 O ILE B 58 N ASP B 55 SHEET 3 J 4 LYS B 67 CYS B 69 -1 O PHE B 68 N VAL B 59 SHEET 4 J 4 VAL B 75 ALA B 77 -1 O LYS B 76 N LYS B 67 LINK SG CYS B 42 FE2 FES B 201 1555 1555 2.23 LINK ND1 HIS B 44 FE1 FES B 201 1555 1555 2.14 LINK SG CYS B 61 FE2 FES B 201 1555 1555 2.27 LINK ND1 HIS B 64 FE1 FES B 201 1555 1555 2.27 CISPEP 1 LEU B 78 PRO B 79 0 7.44 SITE 1 AC1 29 GLY A 9 GLY A 11 VAL A 12 GLY A 13 SITE 2 AC1 29 ASP A 35 GLU A 36 ARG A 43 PRO A 44 SITE 3 AC1 29 SER A 47 LYS A 48 VAL A 80 ALA A 106 SITE 4 AC1 29 THR A 107 GLY A 108 ARG A 128 GLY A 274 SITE 5 AC1 29 ASP A 275 GLU A 290 THR A 291 TYR A 292 SITE 6 AC1 29 SER A 319 TRP A 320 HOH A 603 HOH A 605 SITE 7 AC1 29 HOH A 609 HOH A 616 HOH A 627 HOH A 645 SITE 8 AC1 29 HOH A 654 SITE 1 AC2 8 CYS B 42 HIS B 44 GLY B 45 CYS B 61 SITE 2 AC2 8 LEU B 63 HIS B 64 GLY B 66 PRO B 79 CRYST1 120.290 120.290 60.420 90.00 90.00 120.00 P 65 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008313 0.004800 0.000000 0.00000 SCALE2 0.000000 0.009599 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016551 0.00000