HEADER SUGAR BINDING PROTEIN 12-APR-12 4EN9 TITLE CRYSTAL STRUCTURE OF HA70 (HA3) SUBCOMPONENT OF CLOSTRIDIUM BOTULINUM TITLE 2 TYPE C PROGENITOR TOXIN IN COMPLEX WITH ALPHA 2-6-SIALYLLACTOSAMINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEMAGGLUTININ COMPONENTS HA-22/23/53; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: HA22-23(HA3A); COMPND 5 SYNONYM: HEMAGGLUTININ COMPONENTS HA70, HA3; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: HEMAGGLUTININ COMPONENTS HA-22/23/53; COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: HA53(HA3B); COMPND 11 SYNONYM: HEMAGGLUTININ COMPONENTS HA70, HA3; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIUM BOTULINUM; SOURCE 3 ORGANISM_TAXID: 1491; SOURCE 4 GENE: HA-70; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: JM109; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PMAL-CRI; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: CLOSTRIDIUM BOTULINUM; SOURCE 12 ORGANISM_TAXID: 1491; SOURCE 13 GENE: HA-70; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: JM109; SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PMAL-CRI KEYWDS CARBOHYDRATE/SUGAR BINDING, SUGAR BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.YAMASHITA,H.YOSHIDA,T.TONOZUKA,A.NISHIKAWA,S.KAMITORI REVDAT 5 08-NOV-23 4EN9 1 HETSYN REVDAT 4 29-JUL-20 4EN9 1 COMPND REMARK SEQADV HETNAM REVDAT 4 2 1 LINK SITE ATOM REVDAT 3 16-MAR-16 4EN9 1 SHEET REVDAT 2 03-JUL-13 4EN9 1 JRNL REVDAT 1 06-JUN-12 4EN9 0 JRNL AUTH S.YAMASHITA,H.YOSHIDA,N.UCHIYAMA,Y.NAKAKITA,S.NAKAKITA, JRNL AUTH 2 T.TONOZUKA,K.OGUMA,A.NISHIKAWA,S.KAMITORI JRNL TITL CARBOHYDRATE RECOGNITION MECHANISM OF HA70 FROM CLOSTRIDIUM JRNL TITL 2 BOTULINUM DEDUCED FROM X-RAY STRUCTURES IN COMPLEXES WITH JRNL TITL 3 SIALYLATED OLIGOSACCHARIDES JRNL REF FEBS LETT. V. 586 2404 2012 JRNL REFN ISSN 0014-5793 JRNL PMID 22684008 JRNL DOI 10.1016/J.FEBSLET.2012.05.055 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH T.NAKAMURA,M.KOTANI,T.TONOZUKA,A.IDE,K.OGUMA,A.NISHIKAWA REMARK 1 TITL CRYSTAL STRUCTURE OF THE HA3 SUBCOMPONENT OF CLOSTRIDIUM REMARK 1 TITL 2 BOTULINUM TYPE C PROGENITOR TOXIN REMARK 1 REF J.MOL.BIOL. V. 385 1193 2009 REMARK 1 REFN ISSN 0022-2836 REMARK 1 PMID 19071137 REMARK 1 DOI 10.1016/J.JMB.2008.11.039 REMARK 2 REMARK 2 RESOLUTION. 2.64 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.64 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.26 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 88421.320 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 95.8 REMARK 3 NUMBER OF REFLECTIONS : 40313 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.220 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.100 REMARK 3 FREE R VALUE TEST SET COUNT : 4066 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.003 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.64 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.81 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.20 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 5690 REMARK 3 BIN R VALUE (WORKING SET) : 0.2710 REMARK 3 BIN FREE R VALUE : 0.3210 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 10.70 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 685 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.012 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4721 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 86 REMARK 3 SOLVENT ATOMS : 285 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 45.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 52.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.08000 REMARK 3 B22 (A**2) : 2.08000 REMARK 3 B33 (A**2) : -4.15000 REMARK 3 B12 (A**2) : 5.32000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.29 REMARK 3 ESD FROM SIGMAA (A) : 0.33 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.35 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.41 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 26.10 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.760 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.32 REMARK 3 BSOL : 43.42 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : CARBOHYDRATE.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : CARBOHYDRATE.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : WATER.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4EN9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-MAY-12. REMARK 100 THE DEPOSITION ID IS D_1000071831. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-JUN-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : AR-NE3A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42102 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.640 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 10.70 REMARK 200 R MERGE (I) : 0.07500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.64 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.30 REMARK 200 R MERGE FOR SHELL (I) : 0.37200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 7.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2ZS6 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 74.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.91 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12%(V/V) 2-METHYL-2,4-PENTENDIOL, 20MM REMARK 280 CACL2, 100MM SODIUM ACETATE, PH 4.6, VAPOR DIFFUSION, HANGING REMARK 280 DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 40.31800 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 40.31800 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 40.31800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 22360 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 70090 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -66.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 87.98850 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 152.40055 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -87.98850 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 152.40055 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ILE A -20 REMARK 465 SER A -19 REMARK 465 GLU A -18 REMARK 465 PHE A -17 REMARK 465 ASP A -16 REMARK 465 TYR A -15 REMARK 465 LYS A -14 REMARK 465 ASP A -13 REMARK 465 HIS A -12 REMARK 465 ASP A -11 REMARK 465 ILE A -10 REMARK 465 ASP A -9 REMARK 465 TYR A -8 REMARK 465 LYS A -7 REMARK 465 ASP A -6 REMARK 465 ASP A -5 REMARK 465 ASP A -4 REMARK 465 ASP A -3 REMARK 465 LYS A -2 REMARK 465 TRP A -1 REMARK 465 ILE A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 LEU A 3 REMARK 465 SER A 4 REMARK 465 ILE A 5 REMARK 465 LYS A 6 REMARK 465 GLU A 7 REMARK 465 LEU A 8 REMARK 465 TYR A 9 REMARK 465 TYR A 10 REMARK 465 THR A 11 REMARK 465 LYS A 12 REMARK 465 ASP A 13 REMARK 465 LYS A 14 REMARK 465 THR A 185 REMARK 465 ILE A 186 REMARK 465 THR A 187 REMARK 465 VAL A 188 REMARK 465 LYS A 189 REMARK 465 GLU A 190 REMARK 465 SER A 191 REMARK 465 LYS A 192 REMARK 465 ASN A 193 REMARK 465 SER A 194 REMARK 465 ASN A 195 REMARK 465 ASN A 196 REMARK 465 ASN A 197 REMARK 465 ILE A 198 REMARK 465 ASN A 199 REMARK 465 PHE A 200 REMARK 465 ASN A 201 REMARK 465 THR A 202 REMARK 465 SER A 203 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG B 273 OD2 ASP B 276 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 38 14.55 51.11 REMARK 500 ARG A 60 40.00 -69.81 REMARK 500 ALA A 65 91.19 -56.62 REMARK 500 SER A 144 -97.99 -105.19 REMARK 500 LEU A 145 -123.61 -128.56 REMARK 500 SER A 155 -4.82 -49.12 REMARK 500 SER B 333 -159.53 -110.46 REMARK 500 ASN B 401 158.63 178.97 REMARK 500 ARG B 437 -137.44 -106.65 REMARK 500 ILE B 455 -68.75 -95.72 REMARK 500 ALA B 463 81.77 -67.02 REMARK 500 ALA B 505 93.80 -15.29 REMARK 500 ASP B 506 76.98 61.98 REMARK 500 ASN B 516 44.51 -89.70 REMARK 500 ASN B 545 85.00 -169.61 REMARK 500 ASN B 546 -74.38 6.20 REMARK 500 GLU B 591 108.36 -58.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2ZS6 RELATED DB: PDB REMARK 900 THE SAME SUBCOMPONENT WITHOUT LIGAND REMARK 900 RELATED ID: 2ZOE RELATED DB: PDB REMARK 900 THE SAME SUBCOMPONENT IN COMPLEX WITH N-ACETYLNEURAMIC ACID REMARK 900 RELATED ID: 4EN6 RELATED DB: PDB REMARK 900 THE SAME SUBCOMPONENT IN COMPLEX WITH ALPHA 2-3-SIALYLLACTOSE REMARK 900 RELATED ID: 4EN7 RELATED DB: PDB REMARK 900 THE SAME SUBCOMPONENT IN COMPLEX WITH ALPHA 2-3-SIALYLLACTOSAMINE REMARK 900 RELATED ID: 4EN8 RELATED DB: PDB REMARK 900 THE SAME SUBCOMPONENT IN COMPLEX WITH ALPHA 2-6-SIALYLLACTOSE DBREF 4EN9 A 1 203 UNP P46085 HA70_CLOBO 1 203 DBREF 4EN9 B 204 623 UNP P46085 HA70_CLOBO 204 623 SEQADV 4EN9 ILE A -20 UNP P46085 EXPRESSION TAG SEQADV 4EN9 SER A -19 UNP P46085 EXPRESSION TAG SEQADV 4EN9 GLU A -18 UNP P46085 EXPRESSION TAG SEQADV 4EN9 PHE A -17 UNP P46085 EXPRESSION TAG SEQADV 4EN9 ASP A -16 UNP P46085 EXPRESSION TAG SEQADV 4EN9 TYR A -15 UNP P46085 EXPRESSION TAG SEQADV 4EN9 LYS A -14 UNP P46085 EXPRESSION TAG SEQADV 4EN9 ASP A -13 UNP P46085 EXPRESSION TAG SEQADV 4EN9 HIS A -12 UNP P46085 EXPRESSION TAG SEQADV 4EN9 ASP A -11 UNP P46085 EXPRESSION TAG SEQADV 4EN9 ILE A -10 UNP P46085 EXPRESSION TAG SEQADV 4EN9 ASP A -9 UNP P46085 EXPRESSION TAG SEQADV 4EN9 TYR A -8 UNP P46085 EXPRESSION TAG SEQADV 4EN9 LYS A -7 UNP P46085 EXPRESSION TAG SEQADV 4EN9 ASP A -6 UNP P46085 EXPRESSION TAG SEQADV 4EN9 ASP A -5 UNP P46085 EXPRESSION TAG SEQADV 4EN9 ASP A -4 UNP P46085 EXPRESSION TAG SEQADV 4EN9 ASP A -3 UNP P46085 EXPRESSION TAG SEQADV 4EN9 LYS A -2 UNP P46085 EXPRESSION TAG SEQADV 4EN9 TRP A -1 UNP P46085 EXPRESSION TAG SEQADV 4EN9 ILE A 0 UNP P46085 EXPRESSION TAG SEQRES 1 A 224 ILE SER GLU PHE ASP TYR LYS ASP HIS ASP ILE ASP TYR SEQRES 2 A 224 LYS ASP ASP ASP ASP LYS TRP ILE MET SER LEU SER ILE SEQRES 3 A 224 LYS GLU LEU TYR TYR THR LYS ASP LYS SER ILE ASN ASN SEQRES 4 A 224 VAL ASN LEU ALA ASP GLY ASN TYR VAL VAL ASN ARG GLY SEQRES 5 A 224 ASP GLY TRP ILE LEU SER ARG GLN ASN GLN ASN LEU GLY SEQRES 6 A 224 GLY ASN ILE SER ASN ASN GLY CYS THR ALA ILE VAL GLY SEQRES 7 A 224 ASP LEU ARG ILE ARG GLU THR ALA THR PRO TYR TYR TYR SEQRES 8 A 224 PRO THR ALA SER PHE ASN GLU GLU TYR ILE LYS ASN ASN SEQRES 9 A 224 VAL GLN ASN VAL PHE ALA ASN PHE THR GLU ALA SER GLU SEQRES 10 A 224 ILE PRO ILE GLY PHE GLU PHE SER LYS THR ALA PRO SER SEQRES 11 A 224 ASN LYS SER LEU TYR MET TYR LEU GLN TYR THR TYR ILE SEQRES 12 A 224 ARG TYR GLU ILE ILE LYS VAL LEU GLN ASN THR VAL THR SEQRES 13 A 224 GLU ARG ALA VAL LEU TYR VAL PRO SER LEU GLY TYR VAL SEQRES 14 A 224 LYS SER ILE GLU PHE ASN SER GLU GLU GLN ILE ASP LYS SEQRES 15 A 224 ASN PHE TYR PHE THR SER GLN ASP LYS CYS ILE LEU ASN SEQRES 16 A 224 GLU LYS PHE ILE TYR LYS LYS ILE ASP ASP THR ILE THR SEQRES 17 A 224 VAL LYS GLU SER LYS ASN SER ASN ASN ASN ILE ASN PHE SEQRES 18 A 224 ASN THR SER SEQRES 1 B 420 GLN THR ILE LEU PRO TYR PRO ASN GLY LEU TYR VAL ILE SEQRES 2 B 420 ASN LYS GLY ASP GLY TYR MET ARG THR ASN ASP LYS ASP SEQRES 3 B 420 LEU ILE GLY THR LEU LEU ILE GLU SER SER THR SER GLY SEQRES 4 B 420 SER ILE ILE GLN PRO ARG LEU ARG ASN THR THR ARG PRO SEQRES 5 B 420 LEU PHE ASN THR SER ASN PRO THR ILE PHE SER GLN GLU SEQRES 6 B 420 TYR THR GLU ALA ARG LEU ASN ASP ALA PHE ASN ILE GLN SEQRES 7 B 420 LEU PHE ASN THR SER THR THR LEU PHE LYS PHE VAL GLU SEQRES 8 B 420 GLU ALA PRO THR ASN LYS ASN ILE SER MET LYS VAL TYR SEQRES 9 B 420 ASN THR TYR GLU LYS TYR GLU LEU ILE ASN TYR GLN ASN SEQRES 10 B 420 GLY ASN ILE ASP ASP LYS ALA GLU TYR TYR LEU PRO SER SEQRES 11 B 420 LEU GLY LYS CYS GLU VAL SER ASP ALA PRO SER PRO GLN SEQRES 12 B 420 ALA PRO VAL VAL GLU THR PRO VAL ASP GLN ASP GLY PHE SEQRES 13 B 420 ILE GLN THR GLY PRO ASN GLU ASN ILE ILE VAL GLY VAL SEQRES 14 B 420 ILE ASN PRO SER GLU ASN ILE GLU GLU ILE SER THR PRO SEQRES 15 B 420 ILE PRO ASP ASP TYR THR TYR ASN ILE PRO THR SER ILE SEQRES 16 B 420 GLN ASN ASN ALA CYS TYR VAL LEU PHE LYS VAL ASN THR SEQRES 17 B 420 THR GLY VAL TYR LYS ILE THR THR LYS ASN ASN LEU PRO SEQRES 18 B 420 PRO LEU ILE ILE TYR GLU ALA ILE GLY SER SER ASN ARG SEQRES 19 B 420 ASN MET ASN SER ASN ASN LEU SER ASN ASP ASN ILE LYS SEQRES 20 B 420 ALA ILE LYS TYR ILE THR GLY LEU ASN ARG SER ASP ALA SEQRES 21 B 420 LYS SER TYR LEU ILE VAL SER LEU PHE LYS ASP LYS ASN SEQRES 22 B 420 TYR TYR ILE ARG ILE PRO GLN ILE SER SER SER THR THR SEQRES 23 B 420 SER GLN LEU ILE PHE LYS ARG GLU LEU GLY ASN ILE SER SEQRES 24 B 420 ASP LEU ALA ASP SER THR VAL ASN ILE LEU ASP ASN LEU SEQRES 25 B 420 ASN THR SER GLY THR HIS TYR TYR THR ARG GLN SER PRO SEQRES 26 B 420 ASP VAL GLY ASN TYR ILE SER TYR GLN LEU THR ILE PRO SEQRES 27 B 420 GLY ASP PHE ASN ASN ILE ALA SER SER ILE PHE SER PHE SEQRES 28 B 420 ARG THR ARG ASN ASN GLN GLY ILE GLY THR LEU TYR ARG SEQRES 29 B 420 LEU THR GLU SER ILE ASN GLY TYR ASN LEU ILE THR ILE SEQRES 30 B 420 ASN ASN TYR SER ASP LEU LEU ASN ASN VAL GLU PRO ILE SEQRES 31 B 420 SER LEU LEU ASN GLY ALA THR TYR ILE PHE ARG VAL LYS SEQRES 32 B 420 VAL THR GLU LEU ASN ASN TYR ASN ILE ILE PHE ASP ALA SEQRES 33 B 420 TYR ARG ASN SER HET NAG C 1 15 HET GAL C 2 11 HET SIA C 3 20 HET MRD A 301 8 HET MRD A 302 8 HET MRD A 303 8 HET MRD B 704 8 HET MRD B 705 8 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM GAL BETA-D-GALACTOPYRANOSE HETNAM SIA N-ACETYL-ALPHA-NEURAMINIC ACID HETNAM MRD (4R)-2-METHYLPENTANE-2,4-DIOL HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN GAL BETA-D-GALACTOSE; D-GALACTOSE; GALACTOSE HETSYN SIA N-ACETYLNEURAMINIC ACID; SIALIC ACID; ALPHA-SIALIC HETSYN 2 SIA ACID; O-SIALIC ACID FORMUL 3 NAG C8 H15 N O6 FORMUL 3 GAL C6 H12 O6 FORMUL 3 SIA C11 H19 N O9 FORMUL 4 MRD 5(C6 H14 O2) FORMUL 9 HOH *285(H2 O) HELIX 1 1 ASN A 76 PHE A 88 1 13 HELIX 2 2 ASN A 90 SER A 95 1 6 HELIX 3 3 SER B 266 ASN B 279 1 14 HELIX 4 4 PRO B 395 ASN B 400 5 6 HELIX 5 5 GLY B 499 ALA B 505 5 7 SHEET 1 A 4 GLY A 45 ASN A 49 0 SHEET 2 A 4 SER A 112 LEU A 130 -1 O MET A 115 N ASN A 46 SHEET 3 A 4 GLY A 24 ILE A 35 -1 N VAL A 28 O GLU A 125 SHEET 4 A 4 LYS A 170 CYS A 171 -1 O LYS A 170 N ILE A 35 SHEET 1 B 5 ILE A 178 LYS A 181 0 SHEET 2 B 5 GLY A 24 ILE A 35 -1 N ASN A 29 O ILE A 178 SHEET 3 B 5 SER A 112 LEU A 130 -1 O GLU A 125 N VAL A 28 SHEET 4 B 5 THR A 133 PHE A 153 -1 O THR A 135 N LYS A 128 SHEET 5 B 5 TYR A 68 TYR A 70 -1 N TYR A 70 O VAL A 139 SHEET 1 C 3 TYR A 68 TYR A 70 0 SHEET 2 C 3 THR A 133 PHE A 153 -1 O VAL A 139 N TYR A 70 SHEET 3 C 3 MET B 439 ASN B 440 -1 O MET B 439 N ARG A 137 SHEET 1 D 4 GLY A 100 THR A 106 0 SHEET 2 D 4 THR A 53 LEU A 59 -1 N ALA A 54 O LYS A 105 SHEET 3 D 4 LEU B 289 GLU B 295 -1 O VAL B 293 N THR A 53 SHEET 4 D 4 SER B 241 GLN B 246 -1 N GLY B 242 O GLU B 294 SHEET 1 E10 LEU B 256 THR B 259 0 SHEET 2 E10 ASN B 322 PRO B 332 -1 O GLU B 328 N ASN B 258 SHEET 3 E10 TYR B 310 GLN B 319 -1 N GLN B 319 O ASN B 322 SHEET 4 E10 GLY B 212 ASN B 217 -1 N ILE B 216 O GLU B 314 SHEET 5 E10 ILE B 368 VAL B 372 -1 O VAL B 370 N VAL B 215 SHEET 6 E10 ALA B 451 GLY B 457 -1 O ILE B 452 N GLY B 371 SHEET 7 E10 ILE B 427 ALA B 431 -1 N ILE B 428 O THR B 456 SHEET 8 E10 TYR B 477 ILE B 481 -1 O TYR B 478 N TYR B 429 SHEET 9 E10 CYS B 403 PHE B 407 -1 N PHE B 407 O TYR B 477 SHEET 10 E10 ASN B 378 GLU B 381 1 N GLU B 380 O TYR B 404 SHEET 1 F 2 TYR B 222 ARG B 224 0 SHEET 2 F 2 PHE B 359 GLN B 361 -1 O ILE B 360 N MET B 223 SHEET 1 G 3 LEU B 230 ILE B 236 0 SHEET 2 G 3 ILE B 302 TYR B 307 -1 O ILE B 302 N ILE B 236 SHEET 3 G 3 LYS B 336 ASP B 341 -1 O GLU B 338 N LYS B 305 SHEET 1 H 9 ASP B 389 ASN B 393 0 SHEET 2 H 9 GLN B 491 GLU B 497 -1 O PHE B 494 N TYR B 390 SHEET 3 H 9 GLY B 413 THR B 418 -1 N THR B 418 O ILE B 493 SHEET 4 H 9 SER B 465 LEU B 471 -1 O LEU B 467 N ILE B 417 SHEET 5 H 9 SER B 507 ILE B 511 -1 O VAL B 509 N TYR B 466 SHEET 6 H 9 TYR B 533 THR B 539 1 O SER B 535 N ASN B 510 SHEET 7 H 9 THR B 600 GLU B 609 -1 O TYR B 601 N LEU B 538 SHEET 8 H 9 GLN B 560 THR B 569 -1 N TYR B 566 O ILE B 602 SHEET 9 H 9 ASN B 576 TYR B 583 -1 O ILE B 580 N LEU B 565 SHEET 1 I 4 TYR B 522 GLN B 526 0 SHEET 2 I 4 ASN B 614 ARG B 621 -1 O ILE B 615 N ARG B 525 SHEET 3 I 4 SER B 549 THR B 556 -1 N ARG B 555 O ASP B 618 SHEET 4 I 4 ILE B 593 LEU B 596 -1 O ILE B 593 N PHE B 552 LINK O4 NAG C 1 C1 GAL C 2 1555 1555 1.39 LINK O6 GAL C 2 C2 SIA C 3 1555 1555 1.39 CISPEP 1 LEU B 423 PRO B 424 0 0.06 CRYST1 175.977 175.977 80.636 90.00 90.00 120.00 P 63 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005683 0.003281 0.000000 0.00000 SCALE2 0.000000 0.006562 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012401 0.00000