data_4ENK # _entry.id 4ENK # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4ENK pdb_00004enk 10.2210/pdb4enk/pdb NDB NA1751 ? ? RCSB RCSB071841 ? ? WWPDB D_1000071841 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 4ENJ unspecified . PDB 4ENM unspecified . PDB 4ENN unspecified . # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4ENK _pdbx_database_status.recvd_initial_deposition_date 2012-04-13 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Tubbs, J.L.' 1 'Arvai, A.S.' 2 'Tainer, J.A.' 3 # _citation.id primary _citation.title 'Atl1 Regulates Choice between Global Genome and Transcription-Coupled Repair of O(6)-Alkylguanines.' _citation.journal_abbrev Mol.Cell _citation.journal_volume 47 _citation.page_first 50 _citation.page_last 60 _citation.year 2012 _citation.journal_id_ASTM MOCEFL _citation.country US _citation.journal_id_ISSN 1097-2765 _citation.journal_id_CSD 2168 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22658721 _citation.pdbx_database_id_DOI 10.1016/j.molcel.2012.04.028 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Latypov, V.F.' 1 ? primary 'Tubbs, J.L.' 2 ? primary 'Watson, A.J.' 3 ? primary 'Marriott, A.S.' 4 ? primary 'McGown, G.' 5 ? primary 'Thorncroft, M.' 6 ? primary 'Wilkinson, O.J.' 7 ? primary 'Senthong, P.' 8 ? primary 'Butt, A.' 9 ? primary 'Arvai, A.S.' 10 ? primary 'Millington, C.L.' 11 ? primary 'Povey, A.C.' 12 ? primary 'Williams, D.M.' 13 ? primary 'Santibanez-Koref, M.F.' 14 ? primary 'Tainer, J.A.' 15 ? primary 'Margison, G.P.' 16 ? # _cell.entry_id 4ENK _cell.length_a 59.501 _cell.length_b 59.501 _cell.length_c 236.917 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4ENK _symmetry.space_group_name_H-M 'P 61 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Alkyltransferase-like protein 1' 13662.412 1 ? ? ? ? 2 polymer syn ;DNA (5'-D(*GP*CP*CP*AP*TP*GP*(6PO)P*CP*TP*AP*GP*TP*A)-3') ; 4033.689 1 ? ? ? ? 3 polymer syn ;DNA (5'-D(*CP*TP*AP*CP*TP*AP*GP*CP*CP*AP*TP*GP*G)-3') ; 3951.586 1 ? ? ? ? 4 water nat water 18.015 1 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;MRMDEFYTKVYDAVCEIPYGKVSTYGEIARYVGMPSYARQVGQAMKHLHPETHVPWHRVINSRGTISKRDISAGEQRQKD RLEEEGVEIYQTSLGEYKLNLPEYMWKPGSHHHHHH ; ;MRMDEFYTKVYDAVCEIPYGKVSTYGEIARYVGMPSYARQVGQAMKHLHPETHVPWHRVINSRGTISKRDISAGEQRQKD RLEEEGVEIYQTSLGEYKLNLPEYMWKPGSHHHHHH ; A ? 2 polydeoxyribonucleotide no yes '(DG)(DC)(DC)(DA)(DT)(DG)(6PO)(DC)(DT)(DA)(DG)(DT)(DA)' GCCATGXCTAGTA B ? 3 polydeoxyribonucleotide no no '(DC)(DT)(DA)(DC)(DT)(DA)(DG)(DC)(DC)(DA)(DT)(DG)(DG)' CTACTAGCCATGG C ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ARG n 1 3 MET n 1 4 ASP n 1 5 GLU n 1 6 PHE n 1 7 TYR n 1 8 THR n 1 9 LYS n 1 10 VAL n 1 11 TYR n 1 12 ASP n 1 13 ALA n 1 14 VAL n 1 15 CYS n 1 16 GLU n 1 17 ILE n 1 18 PRO n 1 19 TYR n 1 20 GLY n 1 21 LYS n 1 22 VAL n 1 23 SER n 1 24 THR n 1 25 TYR n 1 26 GLY n 1 27 GLU n 1 28 ILE n 1 29 ALA n 1 30 ARG n 1 31 TYR n 1 32 VAL n 1 33 GLY n 1 34 MET n 1 35 PRO n 1 36 SER n 1 37 TYR n 1 38 ALA n 1 39 ARG n 1 40 GLN n 1 41 VAL n 1 42 GLY n 1 43 GLN n 1 44 ALA n 1 45 MET n 1 46 LYS n 1 47 HIS n 1 48 LEU n 1 49 HIS n 1 50 PRO n 1 51 GLU n 1 52 THR n 1 53 HIS n 1 54 VAL n 1 55 PRO n 1 56 TRP n 1 57 HIS n 1 58 ARG n 1 59 VAL n 1 60 ILE n 1 61 ASN n 1 62 SER n 1 63 ARG n 1 64 GLY n 1 65 THR n 1 66 ILE n 1 67 SER n 1 68 LYS n 1 69 ARG n 1 70 ASP n 1 71 ILE n 1 72 SER n 1 73 ALA n 1 74 GLY n 1 75 GLU n 1 76 GLN n 1 77 ARG n 1 78 GLN n 1 79 LYS n 1 80 ASP n 1 81 ARG n 1 82 LEU n 1 83 GLU n 1 84 GLU n 1 85 GLU n 1 86 GLY n 1 87 VAL n 1 88 GLU n 1 89 ILE n 1 90 TYR n 1 91 GLN n 1 92 THR n 1 93 SER n 1 94 LEU n 1 95 GLY n 1 96 GLU n 1 97 TYR n 1 98 LYS n 1 99 LEU n 1 100 ASN n 1 101 LEU n 1 102 PRO n 1 103 GLU n 1 104 TYR n 1 105 MET n 1 106 TRP n 1 107 LYS n 1 108 PRO n 1 109 GLY n 1 110 SER n 1 111 HIS n 1 112 HIS n 1 113 HIS n 1 114 HIS n 1 115 HIS n 1 116 HIS n 2 1 DG n 2 2 DC n 2 3 DC n 2 4 DA n 2 5 DT n 2 6 DG n 2 7 6PO n 2 8 DC n 2 9 DT n 2 10 DA n 2 11 DG n 2 12 DT n 2 13 DA n 3 1 DC n 3 2 DT n 3 3 DA n 3 4 DC n 3 5 DT n 3 6 DA n 3 7 DG n 3 8 DC n 3 9 DC n 3 10 DA n 3 11 DT n 3 12 DG n 3 13 DG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'Fission yeast' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'atl1, SPAC1250.04c' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain '972 / ATCC 24843' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Schizosaccharomyces pombe' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 284812 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 2 1 sample ? ? 'synthetic construct' ? 32630 ? 3 1 sample ? ? 'synthetic construct' ? 32630 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP ATL1_SCHPO Q9UTN9 1 ;MRMDEFYTKVYDAVCEIPYGKVSTYGEIARYVGMPSYARQVGQAMKHLHPETHVPWHRVINSRGTISKRDISAGEQRQKD RLEEEGVEIYQTSLGEYKLNLPEYMWKP ; 1 ? 2 PDB 4ENK 4ENK 2 GCCATGXCTAGTA 1 ? 3 PDB 4ENK 4ENK 3 CTACTAGCCATGG 1 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4ENK A 1 ? 108 ? Q9UTN9 1 ? 108 ? 1 108 2 2 4ENK B 1 ? 13 ? 4ENK 1 ? 13 ? 1 13 3 3 4ENK C 1 ? 13 ? 4ENK 14 ? 26 ? 14 26 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4ENK GLY A 109 ? UNP Q9UTN9 ? ? 'expression tag' 109 1 1 4ENK SER A 110 ? UNP Q9UTN9 ? ? 'expression tag' 110 2 1 4ENK HIS A 111 ? UNP Q9UTN9 ? ? 'expression tag' 111 3 1 4ENK HIS A 112 ? UNP Q9UTN9 ? ? 'expression tag' 112 4 1 4ENK HIS A 113 ? UNP Q9UTN9 ? ? 'expression tag' 113 5 1 4ENK HIS A 114 ? UNP Q9UTN9 ? ? 'expression tag' 114 6 1 4ENK HIS A 115 ? UNP Q9UTN9 ? ? 'expression tag' 115 7 1 4ENK HIS A 116 ? UNP Q9UTN9 ? ? 'expression tag' 116 8 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 6PO 'DNA linking' n '9-(2-deoxy-5-O-phosphono-beta-D-erythro-pentofuranosyl)-6-propoxy-9H-purin-2-amine' ? 'C13 H20 N5 O7 P' 389.301 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4ENK _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.93 _exptl_crystal.density_percent_sol 57.99 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 288 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.8 _exptl_crystal_grow.pdbx_details '25% mPEG 2000, 5% sodium formate, 0.2M imidazole-malate, pH 5.8, VAPOR DIFFUSION, HANGING DROP, temperature 288K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2009-02-19 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'ML crystals' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.1158 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ALS BEAMLINE 12.3.1' _diffrn_source.pdbx_synchrotron_site ALS _diffrn_source.pdbx_synchrotron_beamline 12.3.1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.1158 # _reflns.entry_id 4ENK _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 50.0 _reflns.d_resolution_high 3.0445 _reflns.number_obs 5247 _reflns.number_all 5247 _reflns.percent_possible_obs 97.6 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 3.0445 _reflns_shell.d_res_low 3.16 _reflns_shell.percent_possible_all 82.3 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 4ENK _refine.ls_number_reflns_obs 4797 _refine.ls_number_reflns_all 4797 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.17 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 34.879 _refine.ls_d_res_high 3.0445 _refine.ls_percent_reflns_obs 90.19 _refine.ls_R_factor_obs 0.2544 _refine.ls_R_factor_all 0.2544 _refine.ls_R_factor_R_work 0.2499 _refine.ls_R_factor_R_free 0.2952 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10.09 _refine.ls_number_reflns_R_free 484 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] 24.9246 _refine.aniso_B[2][2] 24.9246 _refine.aniso_B[3][3] -49.8492 _refine.aniso_B[1][2] -0.0000 _refine.aniso_B[1][3] -0.0000 _refine.aniso_B[2][3] -0.0000 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0.239 _refine.solvent_model_param_bsol 66.536 _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model 'PDB ENTRY 3GVA' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.28 _refine.pdbx_overall_phase_error 38.20 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 890 _refine_hist.pdbx_number_atoms_nucleic_acid 530 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 1 _refine_hist.number_atoms_total 1421 _refine_hist.d_res_high 3.0445 _refine_hist.d_res_low 34.879 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id f_bond_d 0.010 ? ? 1516 ? 'X-RAY DIFFRACTION' f_angle_d 1.651 ? ? 2158 ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 27.221 ? ? 619 ? 'X-RAY DIFFRACTION' f_chiral_restr 0.088 ? ? 227 ? 'X-RAY DIFFRACTION' f_plane_restr 0.008 ? ? 188 ? 'X-RAY DIFFRACTION' # loop_ _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id . 3.0445 3.4847 1163 0.3183 76.00 0.4325 . . 131 . . . . 'X-RAY DIFFRACTION' . 3.4847 4.3890 1467 0.2605 95.00 0.3347 . . 167 . . . . 'X-RAY DIFFRACTION' . 4.3890 34.8812 1683 0.2325 99.00 0.2623 . . 186 . . . . 'X-RAY DIFFRACTION' # _struct.entry_id 4ENK _struct.title 'Crystal structure of S. pombe Atl1 in complex with damaged DNA containing O6-propylguanine' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4ENK _struct_keywords.pdbx_keywords 'DNA BINDING PROTEIN/DNA' _struct_keywords.text ;Alkyltransferase, DNA repair, nucleotide excision repair, NER, base repair, DNA, DNA Damage, Guanine, Alkylation, DNA BINDING PROTEIN-DNA complex ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ARG A 2 ? ILE A 17 ? ARG A 2 ILE A 17 1 ? 16 HELX_P HELX_P2 2 TYR A 25 ? VAL A 32 ? TYR A 25 VAL A 32 1 ? 8 HELX_P HELX_P3 3 ALA A 38 ? HIS A 47 ? ALA A 38 HIS A 47 1 ? 10 HELX_P HELX_P4 4 GLU A 75 ? GLU A 84 ? GLU A 75 GLU A 84 1 ? 10 HELX_P HELX_P5 5 ASN A 100 ? MET A 105 ? ASN A 100 MET A 105 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? B DG 6 "O3'" ? ? ? 1_555 B 6PO 7 P ? ? B DG 6 B 6PO 7 1_555 ? ? ? ? ? ? ? 1.600 ? ? hydrog1 hydrog ? ? B DC 2 N4 ? ? ? 1_555 C DG 12 O6 ? ? B DC 2 C DG 25 1_555 ? ? ? ? ? ? 'DC-DG PAIR' ? ? ? hydrog2 hydrog ? ? B DC 2 N3 ? ? ? 1_555 C DG 13 N1 ? ? B DC 2 C DG 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? B DC 2 N4 ? ? ? 1_555 C DG 13 O6 ? ? B DC 2 C DG 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? B DC 2 O2 ? ? ? 1_555 C DG 13 N2 ? ? B DC 2 C DG 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? B DC 3 N3 ? ? ? 1_555 C DG 12 N1 ? ? B DC 3 C DG 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? B DC 3 N4 ? ? ? 1_555 C DG 12 O6 ? ? B DC 3 C DG 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? B DC 3 O2 ? ? ? 1_555 C DG 12 N2 ? ? B DC 3 C DG 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? B DA 4 N1 ? ? ? 1_555 C DT 11 N3 ? ? B DA 4 C DT 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? B DA 4 N6 ? ? ? 1_555 C DT 11 O4 ? ? B DA 4 C DT 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? B DT 5 N3 ? ? ? 1_555 C DA 10 N1 ? ? B DT 5 C DA 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? B DT 5 O4 ? ? ? 1_555 C DA 10 N6 ? ? B DT 5 C DA 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? B DG 6 N1 ? ? ? 1_555 C DC 9 N3 ? ? B DG 6 C DC 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? B DG 6 N2 ? ? ? 1_555 C DC 9 O2 ? ? B DG 6 C DC 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? B DG 6 O6 ? ? ? 1_555 C DC 9 N4 ? ? B DG 6 C DC 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? B DC 8 N3 ? ? ? 1_555 C DG 7 N1 ? ? B DC 8 C DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? B DC 8 N4 ? ? ? 1_555 C DG 7 O6 ? ? B DC 8 C DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? B DC 8 O2 ? ? ? 1_555 C DG 7 N2 ? ? B DC 8 C DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? B DT 9 O4 ? ? ? 1_555 C DA 6 N6 ? ? B DT 9 C DA 19 1_555 ? ? ? ? ? ? 'DT-DA PAIR' ? ? ? hydrog19 hydrog ? ? B DA 10 N1 ? ? ? 1_555 C DT 5 N3 ? ? B DA 10 C DT 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? B DA 10 N6 ? ? ? 1_555 C DT 5 O4 ? ? B DA 10 C DT 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? B DG 11 N1 ? ? ? 1_555 C DA 3 N1 ? ? B DG 11 C DA 16 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog22 hydrog ? ? B DG 11 O6 ? ? ? 1_555 C DA 3 N6 ? ? B DG 11 C DA 16 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog23 hydrog ? ? B DG 11 N1 ? ? ? 1_555 C DC 4 N3 ? ? B DG 11 C DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? B DG 11 N2 ? ? ? 1_555 C DC 4 O2 ? ? B DG 11 C DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? B DG 11 O6 ? ? ? 1_555 C DC 4 N4 ? ? B DG 11 C DC 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? B DT 12 N3 ? ? ? 1_555 C DA 3 N1 ? ? B DT 12 C DA 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? B DT 12 O4 ? ? ? 1_555 C DA 3 N6 ? ? B DT 12 C DA 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? B DA 13 N1 ? ? ? 1_555 C DT 2 N3 ? ? B DA 13 C DT 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? B DA 13 N6 ? ? ? 1_555 C DT 2 O4 ? ? B DA 13 C DT 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 2 _struct_sheet.details ? # _struct_sheet_order.sheet_id A _struct_sheet_order.range_id_1 1 _struct_sheet_order.range_id_2 2 _struct_sheet_order.offset ? _struct_sheet_order.sense parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 SER A 23 ? THR A 24 ? SER A 23 THR A 24 A 2 VAL A 59 ? ILE A 60 ? VAL A 59 ILE A 60 # _pdbx_struct_sheet_hbond.sheet_id A _pdbx_struct_sheet_hbond.range_id_1 1 _pdbx_struct_sheet_hbond.range_id_2 2 _pdbx_struct_sheet_hbond.range_1_label_atom_id N _pdbx_struct_sheet_hbond.range_1_label_comp_id SER _pdbx_struct_sheet_hbond.range_1_label_asym_id A _pdbx_struct_sheet_hbond.range_1_label_seq_id 23 _pdbx_struct_sheet_hbond.range_1_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_1_auth_atom_id N _pdbx_struct_sheet_hbond.range_1_auth_comp_id SER _pdbx_struct_sheet_hbond.range_1_auth_asym_id A _pdbx_struct_sheet_hbond.range_1_auth_seq_id 23 _pdbx_struct_sheet_hbond.range_2_label_atom_id O _pdbx_struct_sheet_hbond.range_2_label_comp_id ILE _pdbx_struct_sheet_hbond.range_2_label_asym_id A _pdbx_struct_sheet_hbond.range_2_label_seq_id 60 _pdbx_struct_sheet_hbond.range_2_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_2_auth_atom_id O _pdbx_struct_sheet_hbond.range_2_auth_comp_id ILE _pdbx_struct_sheet_hbond.range_2_auth_asym_id A _pdbx_struct_sheet_hbond.range_2_auth_seq_id 60 # _database_PDB_matrix.entry_id 4ENK _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4ENK _atom_sites.fract_transf_matrix[1][1] 0.016806 _atom_sites.fract_transf_matrix[1][2] 0.009703 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.019406 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.004221 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 1 MET MET A . n A 1 2 ARG 2 2 2 ARG ARG A . n A 1 3 MET 3 3 3 MET MET A . n A 1 4 ASP 4 4 4 ASP ASP A . n A 1 5 GLU 5 5 5 GLU GLU A . n A 1 6 PHE 6 6 6 PHE PHE A . n A 1 7 TYR 7 7 7 TYR TYR A . n A 1 8 THR 8 8 8 THR THR A . n A 1 9 LYS 9 9 9 LYS LYS A . n A 1 10 VAL 10 10 10 VAL VAL A . n A 1 11 TYR 11 11 11 TYR TYR A . n A 1 12 ASP 12 12 12 ASP ASP A . n A 1 13 ALA 13 13 13 ALA ALA A . n A 1 14 VAL 14 14 14 VAL VAL A . n A 1 15 CYS 15 15 15 CYS CYS A . n A 1 16 GLU 16 16 16 GLU GLU A . n A 1 17 ILE 17 17 17 ILE ILE A . n A 1 18 PRO 18 18 18 PRO PRO A . n A 1 19 TYR 19 19 19 TYR TYR A . n A 1 20 GLY 20 20 20 GLY GLY A . n A 1 21 LYS 21 21 21 LYS LYS A . n A 1 22 VAL 22 22 22 VAL VAL A . n A 1 23 SER 23 23 23 SER SER A . n A 1 24 THR 24 24 24 THR THR A . n A 1 25 TYR 25 25 25 TYR TYR A . n A 1 26 GLY 26 26 26 GLY GLY A . n A 1 27 GLU 27 27 27 GLU GLU A . n A 1 28 ILE 28 28 28 ILE ILE A . n A 1 29 ALA 29 29 29 ALA ALA A . n A 1 30 ARG 30 30 30 ARG ARG A . n A 1 31 TYR 31 31 31 TYR TYR A . n A 1 32 VAL 32 32 32 VAL VAL A . n A 1 33 GLY 33 33 33 GLY GLY A . n A 1 34 MET 34 34 34 MET MET A . n A 1 35 PRO 35 35 35 PRO PRO A . n A 1 36 SER 36 36 36 SER SER A . n A 1 37 TYR 37 37 37 TYR TYR A . n A 1 38 ALA 38 38 38 ALA ALA A . n A 1 39 ARG 39 39 39 ARG ARG A . n A 1 40 GLN 40 40 40 GLN GLN A . n A 1 41 VAL 41 41 41 VAL VAL A . n A 1 42 GLY 42 42 42 GLY GLY A . n A 1 43 GLN 43 43 43 GLN GLN A . n A 1 44 ALA 44 44 44 ALA ALA A . n A 1 45 MET 45 45 45 MET MET A . n A 1 46 LYS 46 46 46 LYS LYS A . n A 1 47 HIS 47 47 47 HIS HIS A . n A 1 48 LEU 48 48 48 LEU LEU A . n A 1 49 HIS 49 49 49 HIS HIS A . n A 1 50 PRO 50 50 50 PRO PRO A . n A 1 51 GLU 51 51 51 GLU GLU A . n A 1 52 THR 52 52 52 THR THR A . n A 1 53 HIS 53 53 53 HIS HIS A . n A 1 54 VAL 54 54 54 VAL VAL A . n A 1 55 PRO 55 55 55 PRO PRO A . n A 1 56 TRP 56 56 56 TRP TRP A . n A 1 57 HIS 57 57 57 HIS HIS A . n A 1 58 ARG 58 58 58 ARG ARG A . n A 1 59 VAL 59 59 59 VAL VAL A . n A 1 60 ILE 60 60 60 ILE ILE A . n A 1 61 ASN 61 61 61 ASN ASN A . n A 1 62 SER 62 62 62 SER SER A . n A 1 63 ARG 63 63 63 ARG ARG A . n A 1 64 GLY 64 64 64 GLY GLY A . n A 1 65 THR 65 65 65 THR THR A . n A 1 66 ILE 66 66 66 ILE ILE A . n A 1 67 SER 67 67 67 SER SER A . n A 1 68 LYS 68 68 68 LYS LYS A . n A 1 69 ARG 69 69 69 ARG ARG A . n A 1 70 ASP 70 70 70 ASP ASP A . n A 1 71 ILE 71 71 71 ILE ILE A . n A 1 72 SER 72 72 72 SER SER A . n A 1 73 ALA 73 73 73 ALA ALA A . n A 1 74 GLY 74 74 74 GLY GLY A . n A 1 75 GLU 75 75 75 GLU GLU A . n A 1 76 GLN 76 76 76 GLN GLN A . n A 1 77 ARG 77 77 77 ARG ARG A . n A 1 78 GLN 78 78 78 GLN GLN A . n A 1 79 LYS 79 79 79 LYS LYS A . n A 1 80 ASP 80 80 80 ASP ASP A . n A 1 81 ARG 81 81 81 ARG ARG A . n A 1 82 LEU 82 82 82 LEU LEU A . n A 1 83 GLU 83 83 83 GLU GLU A . n A 1 84 GLU 84 84 84 GLU GLU A . n A 1 85 GLU 85 85 85 GLU GLU A . n A 1 86 GLY 86 86 86 GLY GLY A . n A 1 87 VAL 87 87 87 VAL VAL A . n A 1 88 GLU 88 88 88 GLU GLU A . n A 1 89 ILE 89 89 89 ILE ILE A . n A 1 90 TYR 90 90 90 TYR TYR A . n A 1 91 GLN 91 91 91 GLN GLN A . n A 1 92 THR 92 92 92 THR THR A . n A 1 93 SER 93 93 93 SER SER A . n A 1 94 LEU 94 94 94 LEU LEU A . n A 1 95 GLY 95 95 95 GLY GLY A . n A 1 96 GLU 96 96 96 GLU GLU A . n A 1 97 TYR 97 97 97 TYR TYR A . n A 1 98 LYS 98 98 98 LYS LYS A . n A 1 99 LEU 99 99 99 LEU LEU A . n A 1 100 ASN 100 100 100 ASN ASN A . n A 1 101 LEU 101 101 101 LEU LEU A . n A 1 102 PRO 102 102 102 PRO PRO A . n A 1 103 GLU 103 103 103 GLU GLU A . n A 1 104 TYR 104 104 104 TYR TYR A . n A 1 105 MET 105 105 105 MET MET A . n A 1 106 TRP 106 106 106 TRP TRP A . n A 1 107 LYS 107 107 107 LYS LYS A . n A 1 108 PRO 108 108 108 PRO PRO A . n A 1 109 GLY 109 109 ? ? ? A . n A 1 110 SER 110 110 ? ? ? A . n A 1 111 HIS 111 111 ? ? ? A . n A 1 112 HIS 112 112 ? ? ? A . n A 1 113 HIS 113 113 ? ? ? A . n A 1 114 HIS 114 114 ? ? ? A . n A 1 115 HIS 115 115 ? ? ? A . n A 1 116 HIS 116 116 ? ? ? A . n B 2 1 DG 1 1 1 DG DG B . n B 2 2 DC 2 2 2 DC DC B . n B 2 3 DC 3 3 3 DC DC B . n B 2 4 DA 4 4 4 DA DA B . n B 2 5 DT 5 5 5 DT DT B . n B 2 6 DG 6 6 6 DG DG B . n B 2 7 6PO 7 7 7 6PO 6PO B . n B 2 8 DC 8 8 8 DC DC B . n B 2 9 DT 9 9 9 DT DT B . n B 2 10 DA 10 10 10 DA DA B . n B 2 11 DG 11 11 11 DG DG B . n B 2 12 DT 12 12 12 DT DT B . n B 2 13 DA 13 13 13 DA DA B . n C 3 1 DC 1 14 14 DC DC C . n C 3 2 DT 2 15 15 DT DT C . n C 3 3 DA 3 16 16 DA DA C . n C 3 4 DC 4 17 17 DC DC C . n C 3 5 DT 5 18 18 DT DT C . n C 3 6 DA 6 19 19 DA DA C . n C 3 7 DG 7 20 20 DG DG C . n C 3 8 DC 8 21 21 DC DC C . n C 3 9 DC 9 22 22 DC DC C . n C 3 10 DA 10 23 23 DA DA C . n C 3 11 DT 11 24 24 DT DT C . n C 3 12 DG 12 25 25 DG DG C . n C 3 13 DG 13 26 26 DG DG C . n # _pdbx_nonpoly_scheme.asym_id D _pdbx_nonpoly_scheme.entity_id 4 _pdbx_nonpoly_scheme.mon_id HOH _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 101 _pdbx_nonpoly_scheme.auth_seq_num 1 _pdbx_nonpoly_scheme.pdb_mon_id HOH _pdbx_nonpoly_scheme.auth_mon_id HOH _pdbx_nonpoly_scheme.pdb_strand_id C _pdbx_nonpoly_scheme.pdb_ins_code . # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id B _pdbx_struct_mod_residue.label_comp_id 6PO _pdbx_struct_mod_residue.label_seq_id 7 _pdbx_struct_mod_residue.auth_asym_id B _pdbx_struct_mod_residue.auth_comp_id 6PO _pdbx_struct_mod_residue.auth_seq_id 7 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id DG _pdbx_struct_mod_residue.details ? # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3240 ? 1 MORE -10 ? 1 'SSA (A^2)' 9710 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-06-20 2 'Structure model' 1 1 2012-08-01 3 'Structure model' 1 2 2023-09-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_initial_refinement_model 5 3 'Structure model' struct_conn 6 3 'Structure model' struct_ref_seq 7 3 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 3 'Structure model' '_struct_ref_seq.db_align_beg' 5 3 'Structure model' '_struct_ref_seq.db_align_end' 6 3 'Structure model' '_struct_ref_seq_dif.details' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-2000 'data collection' . ? 1 PHASER phasing . ? 2 PHENIX refinement '(phenix.refine: 1.6.1_357)' ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 ASP _pdbx_validate_close_contact.auth_seq_id_1 70 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 N _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 SER _pdbx_validate_close_contact.auth_seq_id_2 72 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.19 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 C A HIS 49 ? ? N A PRO 50 ? ? CA A PRO 50 ? ? 129.28 119.30 9.98 1.50 Y 2 1 C A VAL 54 ? ? N A PRO 55 ? ? CA A PRO 55 ? ? 128.70 119.30 9.40 1.50 Y 3 1 "O4'" B DC 2 ? ? "C1'" B DC 2 ? ? "C2'" B DC 2 ? ? 111.14 106.80 4.34 0.50 N 4 1 "O4'" B DC 2 ? ? "C1'" B DC 2 ? ? N1 B DC 2 ? ? 110.30 108.30 2.00 0.30 N 5 1 C6 B DC 2 ? ? N1 B DC 2 ? ? C2 B DC 2 ? ? 122.81 120.30 2.51 0.40 N 6 1 "C1'" B DT 5 ? ? "O4'" B DT 5 ? ? "C4'" B DT 5 ? ? 103.07 110.10 -7.03 1.00 N 7 1 "C3'" B DT 5 ? ? "C2'" B DT 5 ? ? "C1'" B DT 5 ? ? 96.90 102.40 -5.50 0.80 N 8 1 "O4'" B DT 5 ? ? "C1'" B DT 5 ? ? N1 B DT 5 ? ? 110.92 108.30 2.62 0.30 N 9 1 "O4'" B DA 10 ? ? "C1'" B DA 10 ? ? N9 B DA 10 ? ? 115.75 108.30 7.45 0.30 N 10 1 "O4'" B DG 11 ? ? "C1'" B DG 11 ? ? N9 B DG 11 ? ? 113.41 108.30 5.11 0.30 N 11 1 "C3'" B DT 12 ? ? "C2'" B DT 12 ? ? "C1'" B DT 12 ? ? 97.44 102.40 -4.96 0.80 N 12 1 "O4'" B DT 12 ? ? "C1'" B DT 12 ? ? N1 B DT 12 ? ? 112.29 108.30 3.99 0.30 N 13 1 "C1'" C DC 17 ? ? "O4'" C DC 17 ? ? "C4'" C DC 17 ? ? 102.21 110.10 -7.89 1.00 N 14 1 N3 C DT 18 ? ? C4 C DT 18 ? ? O4 C DT 18 ? ? 125.31 119.90 5.41 0.60 N 15 1 C5 C DT 18 ? ? C4 C DT 18 ? ? O4 C DT 18 ? ? 119.32 124.90 -5.58 0.70 N 16 1 "C1'" C DA 19 ? ? "O4'" C DA 19 ? ? "C4'" C DA 19 ? ? 103.85 110.10 -6.25 1.00 N 17 1 "C3'" C DA 19 ? ? "C2'" C DA 19 ? ? "C1'" C DA 19 ? ? 89.10 102.40 -13.30 0.80 N 18 1 "O4'" C DA 19 ? ? "C1'" C DA 19 ? ? "C2'" C DA 19 ? ? 100.52 105.90 -5.38 0.80 N 19 1 "O4'" C DA 19 ? ? "C1'" C DA 19 ? ? N9 C DA 19 ? ? 110.35 108.30 2.05 0.30 N 20 1 "O4'" C DG 20 ? ? "C1'" C DG 20 ? ? N9 C DG 20 ? ? 111.26 108.30 2.96 0.30 N 21 1 "O4'" C DC 21 ? ? "C4'" C DC 21 ? ? "C3'" C DC 21 ? ? 101.36 104.50 -3.14 0.40 N 22 1 "O4'" C DC 21 ? ? "C1'" C DC 21 ? ? N1 C DC 21 ? ? 110.24 108.30 1.94 0.30 N 23 1 "C4'" C DC 22 ? ? "C3'" C DC 22 ? ? "C2'" C DC 22 ? ? 97.53 102.20 -4.67 0.70 N 24 1 "C3'" C DC 22 ? ? "C2'" C DC 22 ? ? "C1'" C DC 22 ? ? 94.08 102.40 -8.32 0.80 N 25 1 "O4'" C DC 22 ? ? "C1'" C DC 22 ? ? N1 C DC 22 ? ? 112.28 108.30 3.98 0.30 N 26 1 "O4'" C DA 23 ? ? "C1'" C DA 23 ? ? N9 C DA 23 ? ? 102.69 108.00 -5.31 0.70 N 27 1 "O4'" C DT 24 ? ? "C1'" C DT 24 ? ? N1 C DT 24 ? ? 110.47 108.30 2.17 0.30 N 28 1 C5 C DT 24 ? ? C4 C DT 24 ? ? O4 C DT 24 ? ? 120.69 124.90 -4.21 0.70 N 29 1 "C3'" C DG 25 ? ? "C2'" C DG 25 ? ? "C1'" C DG 25 ? ? 96.72 102.40 -5.68 0.80 N 30 1 "O4'" C DG 25 ? ? "C1'" C DG 25 ? ? N9 C DG 25 ? ? 112.76 108.30 4.46 0.30 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 MET A 3 ? ? -47.14 -89.88 2 1 ASP A 4 ? ? -11.90 -44.71 3 1 PRO A 35 ? ? -35.26 -38.67 4 1 SER A 36 ? ? -78.76 30.51 5 1 HIS A 53 ? ? -103.04 43.27 6 1 PRO A 55 ? ? -74.04 40.88 7 1 ARG A 58 ? ? -90.19 33.85 8 1 ARG A 69 ? ? 86.80 -30.01 9 1 ASP A 70 ? ? 46.09 -92.74 10 1 ILE A 71 ? ? -48.69 14.69 11 1 ALA A 73 ? ? -20.26 -51.78 12 1 LYS A 79 ? ? -53.32 -76.47 13 1 GLU A 84 ? ? -71.86 34.32 14 1 GLU A 85 ? ? -150.89 -9.51 15 1 TYR A 90 ? ? -128.82 -156.02 16 1 GLN A 91 ? ? -153.14 -155.66 17 1 GLU A 96 ? ? -73.67 -160.94 18 1 ASN A 100 ? ? -58.85 87.48 19 1 LEU A 101 ? ? -54.51 -72.37 20 1 PRO A 102 ? ? -55.72 -9.09 21 1 GLU A 103 ? ? -72.75 -81.73 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 109 ? A GLY 109 2 1 Y 1 A SER 110 ? A SER 110 3 1 Y 1 A HIS 111 ? A HIS 111 4 1 Y 1 A HIS 112 ? A HIS 112 5 1 Y 1 A HIS 113 ? A HIS 113 6 1 Y 1 A HIS 114 ? A HIS 114 7 1 Y 1 A HIS 115 ? A HIS 115 8 1 Y 1 A HIS 116 ? A HIS 116 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 6PO OP2 O N N 1 6PO P P N N 2 6PO OP1 O N N 3 6PO "O5'" O N N 4 6PO "C5'" C N N 5 6PO "C4'" C N R 6 6PO "C3'" C N S 7 6PO "O3'" O N N 8 6PO "C2'" C N N 9 6PO "O4'" O N N 10 6PO "C1'" C N R 11 6PO N9 N Y N 12 6PO C8 C Y N 13 6PO N7 N Y N 14 6PO C5 C Y N 15 6PO C4 C Y N 16 6PO C6 C Y N 17 6PO N1 N Y N 18 6PO C2 C Y N 19 6PO N2 N N N 20 6PO N3 N Y N 21 6PO O6 O N N 22 6PO C1X C N N 23 6PO C2X C N N 24 6PO C3X C N N 25 6PO HOP2 H N N 26 6PO "H5'" H N N 27 6PO "H5''" H N N 28 6PO "H4'" H N N 29 6PO "H3'" H N N 30 6PO "HO3'" H N N 31 6PO "H2'" H N N 32 6PO "H2''" H N N 33 6PO "H1'" H N N 34 6PO H8 H N N 35 6PO HN1 H N N 36 6PO HN2 H N N 37 6PO H1X1 H N N 38 6PO H1X2 H N N 39 6PO H2X1 H N N 40 6PO H2X2 H N N 41 6PO H3X1 H N N 42 6PO H3X2 H N N 43 6PO H3X3 H N N 44 6PO OP3 O N N 45 6PO HOP3 H N N 46 ALA N N N N 47 ALA CA C N S 48 ALA C C N N 49 ALA O O N N 50 ALA CB C N N 51 ALA OXT O N N 52 ALA H H N N 53 ALA H2 H N N 54 ALA HA H N N 55 ALA HB1 H N N 56 ALA HB2 H N N 57 ALA HB3 H N N 58 ALA HXT H N N 59 ARG N N N N 60 ARG CA C N S 61 ARG C C N N 62 ARG O O N N 63 ARG CB C N N 64 ARG CG C N N 65 ARG CD C N N 66 ARG NE N N N 67 ARG CZ C N N 68 ARG NH1 N N N 69 ARG NH2 N N N 70 ARG OXT O N N 71 ARG H H N N 72 ARG H2 H N N 73 ARG HA H N N 74 ARG HB2 H N N 75 ARG HB3 H N N 76 ARG HG2 H N N 77 ARG HG3 H N N 78 ARG HD2 H N N 79 ARG HD3 H N N 80 ARG HE H N N 81 ARG HH11 H N N 82 ARG HH12 H N N 83 ARG HH21 H N N 84 ARG HH22 H N N 85 ARG HXT H N N 86 ASN N N N N 87 ASN CA C N S 88 ASN C C N N 89 ASN O O N N 90 ASN CB C N N 91 ASN CG C N N 92 ASN OD1 O N N 93 ASN ND2 N N N 94 ASN OXT O N N 95 ASN H H N N 96 ASN H2 H N N 97 ASN HA H N N 98 ASN HB2 H N N 99 ASN HB3 H N N 100 ASN HD21 H N N 101 ASN HD22 H N N 102 ASN HXT H N N 103 ASP N N N N 104 ASP CA C N S 105 ASP C C N N 106 ASP O O N N 107 ASP CB C N N 108 ASP CG C N N 109 ASP OD1 O N N 110 ASP OD2 O N N 111 ASP OXT O N N 112 ASP H H N N 113 ASP H2 H N N 114 ASP HA H N N 115 ASP HB2 H N N 116 ASP HB3 H N N 117 ASP HD2 H N N 118 ASP HXT H N N 119 CYS N N N N 120 CYS CA C N R 121 CYS C C N N 122 CYS O O N N 123 CYS CB C N N 124 CYS SG S N N 125 CYS OXT O N N 126 CYS H H N N 127 CYS H2 H N N 128 CYS HA H N N 129 CYS HB2 H N N 130 CYS HB3 H N N 131 CYS HG H N N 132 CYS HXT H N N 133 DA OP3 O N N 134 DA P P N N 135 DA OP1 O N N 136 DA OP2 O N N 137 DA "O5'" O N N 138 DA "C5'" C N N 139 DA "C4'" C N R 140 DA "O4'" O N N 141 DA "C3'" C N S 142 DA "O3'" O N N 143 DA "C2'" C N N 144 DA "C1'" C N R 145 DA N9 N Y N 146 DA C8 C Y N 147 DA N7 N Y N 148 DA C5 C Y N 149 DA C6 C Y N 150 DA N6 N N N 151 DA N1 N Y N 152 DA C2 C Y N 153 DA N3 N Y N 154 DA C4 C Y N 155 DA HOP3 H N N 156 DA HOP2 H N N 157 DA "H5'" H N N 158 DA "H5''" H N N 159 DA "H4'" H N N 160 DA "H3'" H N N 161 DA "HO3'" H N N 162 DA "H2'" H N N 163 DA "H2''" H N N 164 DA "H1'" H N N 165 DA H8 H N N 166 DA H61 H N N 167 DA H62 H N N 168 DA H2 H N N 169 DC OP3 O N N 170 DC P P N N 171 DC OP1 O N N 172 DC OP2 O N N 173 DC "O5'" O N N 174 DC "C5'" C N N 175 DC "C4'" C N R 176 DC "O4'" O N N 177 DC "C3'" C N S 178 DC "O3'" O N N 179 DC "C2'" C N N 180 DC "C1'" C N R 181 DC N1 N N N 182 DC C2 C N N 183 DC O2 O N N 184 DC N3 N N N 185 DC C4 C N N 186 DC N4 N N N 187 DC C5 C N N 188 DC C6 C N N 189 DC HOP3 H N N 190 DC HOP2 H N N 191 DC "H5'" H N N 192 DC "H5''" H N N 193 DC "H4'" H N N 194 DC "H3'" H N N 195 DC "HO3'" H N N 196 DC "H2'" H N N 197 DC "H2''" H N N 198 DC "H1'" H N N 199 DC H41 H N N 200 DC H42 H N N 201 DC H5 H N N 202 DC H6 H N N 203 DG OP3 O N N 204 DG P P N N 205 DG OP1 O N N 206 DG OP2 O N N 207 DG "O5'" O N N 208 DG "C5'" C N N 209 DG "C4'" C N R 210 DG "O4'" O N N 211 DG "C3'" C N S 212 DG "O3'" O N N 213 DG "C2'" C N N 214 DG "C1'" C N R 215 DG N9 N Y N 216 DG C8 C Y N 217 DG N7 N Y N 218 DG C5 C Y N 219 DG C6 C N N 220 DG O6 O N N 221 DG N1 N N N 222 DG C2 C N N 223 DG N2 N N N 224 DG N3 N N N 225 DG C4 C Y N 226 DG HOP3 H N N 227 DG HOP2 H N N 228 DG "H5'" H N N 229 DG "H5''" H N N 230 DG "H4'" H N N 231 DG "H3'" H N N 232 DG "HO3'" H N N 233 DG "H2'" H N N 234 DG "H2''" H N N 235 DG "H1'" H N N 236 DG H8 H N N 237 DG H1 H N N 238 DG H21 H N N 239 DG H22 H N N 240 DT OP3 O N N 241 DT P P N N 242 DT OP1 O N N 243 DT OP2 O N N 244 DT "O5'" O N N 245 DT "C5'" C N N 246 DT "C4'" C N R 247 DT "O4'" O N N 248 DT "C3'" C N S 249 DT "O3'" O N N 250 DT "C2'" C N N 251 DT "C1'" C N R 252 DT N1 N N N 253 DT C2 C N N 254 DT O2 O N N 255 DT N3 N N N 256 DT C4 C N N 257 DT O4 O N N 258 DT C5 C N N 259 DT C7 C N N 260 DT C6 C N N 261 DT HOP3 H N N 262 DT HOP2 H N N 263 DT "H5'" H N N 264 DT "H5''" H N N 265 DT "H4'" H N N 266 DT "H3'" H N N 267 DT "HO3'" H N N 268 DT "H2'" H N N 269 DT "H2''" H N N 270 DT "H1'" H N N 271 DT H3 H N N 272 DT H71 H N N 273 DT H72 H N N 274 DT H73 H N N 275 DT H6 H N N 276 GLN N N N N 277 GLN CA C N S 278 GLN C C N N 279 GLN O O N N 280 GLN CB C N N 281 GLN CG C N N 282 GLN CD C N N 283 GLN OE1 O N N 284 GLN NE2 N N N 285 GLN OXT O N N 286 GLN H H N N 287 GLN H2 H N N 288 GLN HA H N N 289 GLN HB2 H N N 290 GLN HB3 H N N 291 GLN HG2 H N N 292 GLN HG3 H N N 293 GLN HE21 H N N 294 GLN HE22 H N N 295 GLN HXT H N N 296 GLU N N N N 297 GLU CA C N S 298 GLU C C N N 299 GLU O O N N 300 GLU CB C N N 301 GLU CG C N N 302 GLU CD C N N 303 GLU OE1 O N N 304 GLU OE2 O N N 305 GLU OXT O N N 306 GLU H H N N 307 GLU H2 H N N 308 GLU HA H N N 309 GLU HB2 H N N 310 GLU HB3 H N N 311 GLU HG2 H N N 312 GLU HG3 H N N 313 GLU HE2 H N N 314 GLU HXT H N N 315 GLY N N N N 316 GLY CA C N N 317 GLY C C N N 318 GLY O O N N 319 GLY OXT O N N 320 GLY H H N N 321 GLY H2 H N N 322 GLY HA2 H N N 323 GLY HA3 H N N 324 GLY HXT H N N 325 HIS N N N N 326 HIS CA C N S 327 HIS C C N N 328 HIS O O N N 329 HIS CB C N N 330 HIS CG C Y N 331 HIS ND1 N Y N 332 HIS CD2 C Y N 333 HIS CE1 C Y N 334 HIS NE2 N Y N 335 HIS OXT O N N 336 HIS H H N N 337 HIS H2 H N N 338 HIS HA H N N 339 HIS HB2 H N N 340 HIS HB3 H N N 341 HIS HD1 H N N 342 HIS HD2 H N N 343 HIS HE1 H N N 344 HIS HE2 H N N 345 HIS HXT H N N 346 HOH O O N N 347 HOH H1 H N N 348 HOH H2 H N N 349 ILE N N N N 350 ILE CA C N S 351 ILE C C N N 352 ILE O O N N 353 ILE CB C N S 354 ILE CG1 C N N 355 ILE CG2 C N N 356 ILE CD1 C N N 357 ILE OXT O N N 358 ILE H H N N 359 ILE H2 H N N 360 ILE HA H N N 361 ILE HB H N N 362 ILE HG12 H N N 363 ILE HG13 H N N 364 ILE HG21 H N N 365 ILE HG22 H N N 366 ILE HG23 H N N 367 ILE HD11 H N N 368 ILE HD12 H N N 369 ILE HD13 H N N 370 ILE HXT H N N 371 LEU N N N N 372 LEU CA C N S 373 LEU C C N N 374 LEU O O N N 375 LEU CB C N N 376 LEU CG C N N 377 LEU CD1 C N N 378 LEU CD2 C N N 379 LEU OXT O N N 380 LEU H H N N 381 LEU H2 H N N 382 LEU HA H N N 383 LEU HB2 H N N 384 LEU HB3 H N N 385 LEU HG H N N 386 LEU HD11 H N N 387 LEU HD12 H N N 388 LEU HD13 H N N 389 LEU HD21 H N N 390 LEU HD22 H N N 391 LEU HD23 H N N 392 LEU HXT H N N 393 LYS N N N N 394 LYS CA C N S 395 LYS C C N N 396 LYS O O N N 397 LYS CB C N N 398 LYS CG C N N 399 LYS CD C N N 400 LYS CE C N N 401 LYS NZ N N N 402 LYS OXT O N N 403 LYS H H N N 404 LYS H2 H N N 405 LYS HA H N N 406 LYS HB2 H N N 407 LYS HB3 H N N 408 LYS HG2 H N N 409 LYS HG3 H N N 410 LYS HD2 H N N 411 LYS HD3 H N N 412 LYS HE2 H N N 413 LYS HE3 H N N 414 LYS HZ1 H N N 415 LYS HZ2 H N N 416 LYS HZ3 H N N 417 LYS HXT H N N 418 MET N N N N 419 MET CA C N S 420 MET C C N N 421 MET O O N N 422 MET CB C N N 423 MET CG C N N 424 MET SD S N N 425 MET CE C N N 426 MET OXT O N N 427 MET H H N N 428 MET H2 H N N 429 MET HA H N N 430 MET HB2 H N N 431 MET HB3 H N N 432 MET HG2 H N N 433 MET HG3 H N N 434 MET HE1 H N N 435 MET HE2 H N N 436 MET HE3 H N N 437 MET HXT H N N 438 PHE N N N N 439 PHE CA C N S 440 PHE C C N N 441 PHE O O N N 442 PHE CB C N N 443 PHE CG C Y N 444 PHE CD1 C Y N 445 PHE CD2 C Y N 446 PHE CE1 C Y N 447 PHE CE2 C Y N 448 PHE CZ C Y N 449 PHE OXT O N N 450 PHE H H N N 451 PHE H2 H N N 452 PHE HA H N N 453 PHE HB2 H N N 454 PHE HB3 H N N 455 PHE HD1 H N N 456 PHE HD2 H N N 457 PHE HE1 H N N 458 PHE HE2 H N N 459 PHE HZ H N N 460 PHE HXT H N N 461 PRO N N N N 462 PRO CA C N S 463 PRO C C N N 464 PRO O O N N 465 PRO CB C N N 466 PRO CG C N N 467 PRO CD C N N 468 PRO OXT O N N 469 PRO H H N N 470 PRO HA H N N 471 PRO HB2 H N N 472 PRO HB3 H N N 473 PRO HG2 H N N 474 PRO HG3 H N N 475 PRO HD2 H N N 476 PRO HD3 H N N 477 PRO HXT H N N 478 SER N N N N 479 SER CA C N S 480 SER C C N N 481 SER O O N N 482 SER CB C N N 483 SER OG O N N 484 SER OXT O N N 485 SER H H N N 486 SER H2 H N N 487 SER HA H N N 488 SER HB2 H N N 489 SER HB3 H N N 490 SER HG H N N 491 SER HXT H N N 492 THR N N N N 493 THR CA C N S 494 THR C C N N 495 THR O O N N 496 THR CB C N R 497 THR OG1 O N N 498 THR CG2 C N N 499 THR OXT O N N 500 THR H H N N 501 THR H2 H N N 502 THR HA H N N 503 THR HB H N N 504 THR HG1 H N N 505 THR HG21 H N N 506 THR HG22 H N N 507 THR HG23 H N N 508 THR HXT H N N 509 TRP N N N N 510 TRP CA C N S 511 TRP C C N N 512 TRP O O N N 513 TRP CB C N N 514 TRP CG C Y N 515 TRP CD1 C Y N 516 TRP CD2 C Y N 517 TRP NE1 N Y N 518 TRP CE2 C Y N 519 TRP CE3 C Y N 520 TRP CZ2 C Y N 521 TRP CZ3 C Y N 522 TRP CH2 C Y N 523 TRP OXT O N N 524 TRP H H N N 525 TRP H2 H N N 526 TRP HA H N N 527 TRP HB2 H N N 528 TRP HB3 H N N 529 TRP HD1 H N N 530 TRP HE1 H N N 531 TRP HE3 H N N 532 TRP HZ2 H N N 533 TRP HZ3 H N N 534 TRP HH2 H N N 535 TRP HXT H N N 536 TYR N N N N 537 TYR CA C N S 538 TYR C C N N 539 TYR O O N N 540 TYR CB C N N 541 TYR CG C Y N 542 TYR CD1 C Y N 543 TYR CD2 C Y N 544 TYR CE1 C Y N 545 TYR CE2 C Y N 546 TYR CZ C Y N 547 TYR OH O N N 548 TYR OXT O N N 549 TYR H H N N 550 TYR H2 H N N 551 TYR HA H N N 552 TYR HB2 H N N 553 TYR HB3 H N N 554 TYR HD1 H N N 555 TYR HD2 H N N 556 TYR HE1 H N N 557 TYR HE2 H N N 558 TYR HH H N N 559 TYR HXT H N N 560 VAL N N N N 561 VAL CA C N S 562 VAL C C N N 563 VAL O O N N 564 VAL CB C N N 565 VAL CG1 C N N 566 VAL CG2 C N N 567 VAL OXT O N N 568 VAL H H N N 569 VAL H2 H N N 570 VAL HA H N N 571 VAL HB H N N 572 VAL HG11 H N N 573 VAL HG12 H N N 574 VAL HG13 H N N 575 VAL HG21 H N N 576 VAL HG22 H N N 577 VAL HG23 H N N 578 VAL HXT H N N 579 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 6PO N2 C2 sing N N 1 6PO "O3'" "C3'" sing N N 2 6PO N3 C2 doub Y N 3 6PO N3 C4 sing Y N 4 6PO C2 N1 sing Y N 5 6PO "C1'" "O4'" sing N N 6 6PO "C1'" N9 sing N N 7 6PO "C1'" "C2'" sing N N 8 6PO "O4'" "C4'" sing N N 9 6PO "C4'" "C3'" sing N N 10 6PO "C4'" "C5'" sing N N 11 6PO "C3'" "C2'" sing N N 12 6PO C4 N9 sing Y N 13 6PO C4 C5 doub Y N 14 6PO N1 C6 doub Y N 15 6PO N9 C8 sing Y N 16 6PO C5 C6 sing Y N 17 6PO C5 N7 sing Y N 18 6PO C6 O6 sing N N 19 6PO "C5'" "O5'" sing N N 20 6PO C8 N7 doub Y N 21 6PO "O5'" P sing N N 22 6PO O6 C1X sing N N 23 6PO C1X C2X sing N N 24 6PO C3X C2X sing N N 25 6PO OP2 P sing N N 26 6PO P OP1 doub N N 27 6PO OP2 HOP2 sing N N 28 6PO "C5'" "H5'" sing N N 29 6PO "C5'" "H5''" sing N N 30 6PO "C4'" "H4'" sing N N 31 6PO "C3'" "H3'" sing N N 32 6PO "O3'" "HO3'" sing N N 33 6PO "C2'" "H2'" sing N N 34 6PO "C2'" "H2''" sing N N 35 6PO "C1'" "H1'" sing N N 36 6PO C8 H8 sing N N 37 6PO N2 HN1 sing N N 38 6PO N2 HN2 sing N N 39 6PO C1X H1X1 sing N N 40 6PO C1X H1X2 sing N N 41 6PO C2X H2X1 sing N N 42 6PO C2X H2X2 sing N N 43 6PO C3X H3X1 sing N N 44 6PO C3X H3X2 sing N N 45 6PO C3X H3X3 sing N N 46 6PO P OP3 sing N N 47 6PO OP3 HOP3 sing N N 48 ALA N CA sing N N 49 ALA N H sing N N 50 ALA N H2 sing N N 51 ALA CA C sing N N 52 ALA CA CB sing N N 53 ALA CA HA sing N N 54 ALA C O doub N N 55 ALA C OXT sing N N 56 ALA CB HB1 sing N N 57 ALA CB HB2 sing N N 58 ALA CB HB3 sing N N 59 ALA OXT HXT sing N N 60 ARG N CA sing N N 61 ARG N H sing N N 62 ARG N H2 sing N N 63 ARG CA C sing N N 64 ARG CA CB sing N N 65 ARG CA HA sing N N 66 ARG C O doub N N 67 ARG C OXT sing N N 68 ARG CB CG sing N N 69 ARG CB HB2 sing N N 70 ARG CB HB3 sing N N 71 ARG CG CD sing N N 72 ARG CG HG2 sing N N 73 ARG CG HG3 sing N N 74 ARG CD NE sing N N 75 ARG CD HD2 sing N N 76 ARG CD HD3 sing N N 77 ARG NE CZ sing N N 78 ARG NE HE sing N N 79 ARG CZ NH1 sing N N 80 ARG CZ NH2 doub N N 81 ARG NH1 HH11 sing N N 82 ARG NH1 HH12 sing N N 83 ARG NH2 HH21 sing N N 84 ARG NH2 HH22 sing N N 85 ARG OXT HXT sing N N 86 ASN N CA sing N N 87 ASN N H sing N N 88 ASN N H2 sing N N 89 ASN CA C sing N N 90 ASN CA CB sing N N 91 ASN CA HA sing N N 92 ASN C O doub N N 93 ASN C OXT sing N N 94 ASN CB CG sing N N 95 ASN CB HB2 sing N N 96 ASN CB HB3 sing N N 97 ASN CG OD1 doub N N 98 ASN CG ND2 sing N N 99 ASN ND2 HD21 sing N N 100 ASN ND2 HD22 sing N N 101 ASN OXT HXT sing N N 102 ASP N CA sing N N 103 ASP N H sing N N 104 ASP N H2 sing N N 105 ASP CA C sing N N 106 ASP CA CB sing N N 107 ASP CA HA sing N N 108 ASP C O doub N N 109 ASP C OXT sing N N 110 ASP CB CG sing N N 111 ASP CB HB2 sing N N 112 ASP CB HB3 sing N N 113 ASP CG OD1 doub N N 114 ASP CG OD2 sing N N 115 ASP OD2 HD2 sing N N 116 ASP OXT HXT sing N N 117 CYS N CA sing N N 118 CYS N H sing N N 119 CYS N H2 sing N N 120 CYS CA C sing N N 121 CYS CA CB sing N N 122 CYS CA HA sing N N 123 CYS C O doub N N 124 CYS C OXT sing N N 125 CYS CB SG sing N N 126 CYS CB HB2 sing N N 127 CYS CB HB3 sing N N 128 CYS SG HG sing N N 129 CYS OXT HXT sing N N 130 DA OP3 P sing N N 131 DA OP3 HOP3 sing N N 132 DA P OP1 doub N N 133 DA P OP2 sing N N 134 DA P "O5'" sing N N 135 DA OP2 HOP2 sing N N 136 DA "O5'" "C5'" sing N N 137 DA "C5'" "C4'" sing N N 138 DA "C5'" "H5'" sing N N 139 DA "C5'" "H5''" sing N N 140 DA "C4'" "O4'" sing N N 141 DA "C4'" "C3'" sing N N 142 DA "C4'" "H4'" sing N N 143 DA "O4'" "C1'" sing N N 144 DA "C3'" "O3'" sing N N 145 DA "C3'" "C2'" sing N N 146 DA "C3'" "H3'" sing N N 147 DA "O3'" "HO3'" sing N N 148 DA "C2'" "C1'" sing N N 149 DA "C2'" "H2'" sing N N 150 DA "C2'" "H2''" sing N N 151 DA "C1'" N9 sing N N 152 DA "C1'" "H1'" sing N N 153 DA N9 C8 sing Y N 154 DA N9 C4 sing Y N 155 DA C8 N7 doub Y N 156 DA C8 H8 sing N N 157 DA N7 C5 sing Y N 158 DA C5 C6 sing Y N 159 DA C5 C4 doub Y N 160 DA C6 N6 sing N N 161 DA C6 N1 doub Y N 162 DA N6 H61 sing N N 163 DA N6 H62 sing N N 164 DA N1 C2 sing Y N 165 DA C2 N3 doub Y N 166 DA C2 H2 sing N N 167 DA N3 C4 sing Y N 168 DC OP3 P sing N N 169 DC OP3 HOP3 sing N N 170 DC P OP1 doub N N 171 DC P OP2 sing N N 172 DC P "O5'" sing N N 173 DC OP2 HOP2 sing N N 174 DC "O5'" "C5'" sing N N 175 DC "C5'" "C4'" sing N N 176 DC "C5'" "H5'" sing N N 177 DC "C5'" "H5''" sing N N 178 DC "C4'" "O4'" sing N N 179 DC "C4'" "C3'" sing N N 180 DC "C4'" "H4'" sing N N 181 DC "O4'" "C1'" sing N N 182 DC "C3'" "O3'" sing N N 183 DC "C3'" "C2'" sing N N 184 DC "C3'" "H3'" sing N N 185 DC "O3'" "HO3'" sing N N 186 DC "C2'" "C1'" sing N N 187 DC "C2'" "H2'" sing N N 188 DC "C2'" "H2''" sing N N 189 DC "C1'" N1 sing N N 190 DC "C1'" "H1'" sing N N 191 DC N1 C2 sing N N 192 DC N1 C6 sing N N 193 DC C2 O2 doub N N 194 DC C2 N3 sing N N 195 DC N3 C4 doub N N 196 DC C4 N4 sing N N 197 DC C4 C5 sing N N 198 DC N4 H41 sing N N 199 DC N4 H42 sing N N 200 DC C5 C6 doub N N 201 DC C5 H5 sing N N 202 DC C6 H6 sing N N 203 DG OP3 P sing N N 204 DG OP3 HOP3 sing N N 205 DG P OP1 doub N N 206 DG P OP2 sing N N 207 DG P "O5'" sing N N 208 DG OP2 HOP2 sing N N 209 DG "O5'" "C5'" sing N N 210 DG "C5'" "C4'" sing N N 211 DG "C5'" "H5'" sing N N 212 DG "C5'" "H5''" sing N N 213 DG "C4'" "O4'" sing N N 214 DG "C4'" "C3'" sing N N 215 DG "C4'" "H4'" sing N N 216 DG "O4'" "C1'" sing N N 217 DG "C3'" "O3'" sing N N 218 DG "C3'" "C2'" sing N N 219 DG "C3'" "H3'" sing N N 220 DG "O3'" "HO3'" sing N N 221 DG "C2'" "C1'" sing N N 222 DG "C2'" "H2'" sing N N 223 DG "C2'" "H2''" sing N N 224 DG "C1'" N9 sing N N 225 DG "C1'" "H1'" sing N N 226 DG N9 C8 sing Y N 227 DG N9 C4 sing Y N 228 DG C8 N7 doub Y N 229 DG C8 H8 sing N N 230 DG N7 C5 sing Y N 231 DG C5 C6 sing N N 232 DG C5 C4 doub Y N 233 DG C6 O6 doub N N 234 DG C6 N1 sing N N 235 DG N1 C2 sing N N 236 DG N1 H1 sing N N 237 DG C2 N2 sing N N 238 DG C2 N3 doub N N 239 DG N2 H21 sing N N 240 DG N2 H22 sing N N 241 DG N3 C4 sing N N 242 DT OP3 P sing N N 243 DT OP3 HOP3 sing N N 244 DT P OP1 doub N N 245 DT P OP2 sing N N 246 DT P "O5'" sing N N 247 DT OP2 HOP2 sing N N 248 DT "O5'" "C5'" sing N N 249 DT "C5'" "C4'" sing N N 250 DT "C5'" "H5'" sing N N 251 DT "C5'" "H5''" sing N N 252 DT "C4'" "O4'" sing N N 253 DT "C4'" "C3'" sing N N 254 DT "C4'" "H4'" sing N N 255 DT "O4'" "C1'" sing N N 256 DT "C3'" "O3'" sing N N 257 DT "C3'" "C2'" sing N N 258 DT "C3'" "H3'" sing N N 259 DT "O3'" "HO3'" sing N N 260 DT "C2'" "C1'" sing N N 261 DT "C2'" "H2'" sing N N 262 DT "C2'" "H2''" sing N N 263 DT "C1'" N1 sing N N 264 DT "C1'" "H1'" sing N N 265 DT N1 C2 sing N N 266 DT N1 C6 sing N N 267 DT C2 O2 doub N N 268 DT C2 N3 sing N N 269 DT N3 C4 sing N N 270 DT N3 H3 sing N N 271 DT C4 O4 doub N N 272 DT C4 C5 sing N N 273 DT C5 C7 sing N N 274 DT C5 C6 doub N N 275 DT C7 H71 sing N N 276 DT C7 H72 sing N N 277 DT C7 H73 sing N N 278 DT C6 H6 sing N N 279 GLN N CA sing N N 280 GLN N H sing N N 281 GLN N H2 sing N N 282 GLN CA C sing N N 283 GLN CA CB sing N N 284 GLN CA HA sing N N 285 GLN C O doub N N 286 GLN C OXT sing N N 287 GLN CB CG sing N N 288 GLN CB HB2 sing N N 289 GLN CB HB3 sing N N 290 GLN CG CD sing N N 291 GLN CG HG2 sing N N 292 GLN CG HG3 sing N N 293 GLN CD OE1 doub N N 294 GLN CD NE2 sing N N 295 GLN NE2 HE21 sing N N 296 GLN NE2 HE22 sing N N 297 GLN OXT HXT sing N N 298 GLU N CA sing N N 299 GLU N H sing N N 300 GLU N H2 sing N N 301 GLU CA C sing N N 302 GLU CA CB sing N N 303 GLU CA HA sing N N 304 GLU C O doub N N 305 GLU C OXT sing N N 306 GLU CB CG sing N N 307 GLU CB HB2 sing N N 308 GLU CB HB3 sing N N 309 GLU CG CD sing N N 310 GLU CG HG2 sing N N 311 GLU CG HG3 sing N N 312 GLU CD OE1 doub N N 313 GLU CD OE2 sing N N 314 GLU OE2 HE2 sing N N 315 GLU OXT HXT sing N N 316 GLY N CA sing N N 317 GLY N H sing N N 318 GLY N H2 sing N N 319 GLY CA C sing N N 320 GLY CA HA2 sing N N 321 GLY CA HA3 sing N N 322 GLY C O doub N N 323 GLY C OXT sing N N 324 GLY OXT HXT sing N N 325 HIS N CA sing N N 326 HIS N H sing N N 327 HIS N H2 sing N N 328 HIS CA C sing N N 329 HIS CA CB sing N N 330 HIS CA HA sing N N 331 HIS C O doub N N 332 HIS C OXT sing N N 333 HIS CB CG sing N N 334 HIS CB HB2 sing N N 335 HIS CB HB3 sing N N 336 HIS CG ND1 sing Y N 337 HIS CG CD2 doub Y N 338 HIS ND1 CE1 doub Y N 339 HIS ND1 HD1 sing N N 340 HIS CD2 NE2 sing Y N 341 HIS CD2 HD2 sing N N 342 HIS CE1 NE2 sing Y N 343 HIS CE1 HE1 sing N N 344 HIS NE2 HE2 sing N N 345 HIS OXT HXT sing N N 346 HOH O H1 sing N N 347 HOH O H2 sing N N 348 ILE N CA sing N N 349 ILE N H sing N N 350 ILE N H2 sing N N 351 ILE CA C sing N N 352 ILE CA CB sing N N 353 ILE CA HA sing N N 354 ILE C O doub N N 355 ILE C OXT sing N N 356 ILE CB CG1 sing N N 357 ILE CB CG2 sing N N 358 ILE CB HB sing N N 359 ILE CG1 CD1 sing N N 360 ILE CG1 HG12 sing N N 361 ILE CG1 HG13 sing N N 362 ILE CG2 HG21 sing N N 363 ILE CG2 HG22 sing N N 364 ILE CG2 HG23 sing N N 365 ILE CD1 HD11 sing N N 366 ILE CD1 HD12 sing N N 367 ILE CD1 HD13 sing N N 368 ILE OXT HXT sing N N 369 LEU N CA sing N N 370 LEU N H sing N N 371 LEU N H2 sing N N 372 LEU CA C sing N N 373 LEU CA CB sing N N 374 LEU CA HA sing N N 375 LEU C O doub N N 376 LEU C OXT sing N N 377 LEU CB CG sing N N 378 LEU CB HB2 sing N N 379 LEU CB HB3 sing N N 380 LEU CG CD1 sing N N 381 LEU CG CD2 sing N N 382 LEU CG HG sing N N 383 LEU CD1 HD11 sing N N 384 LEU CD1 HD12 sing N N 385 LEU CD1 HD13 sing N N 386 LEU CD2 HD21 sing N N 387 LEU CD2 HD22 sing N N 388 LEU CD2 HD23 sing N N 389 LEU OXT HXT sing N N 390 LYS N CA sing N N 391 LYS N H sing N N 392 LYS N H2 sing N N 393 LYS CA C sing N N 394 LYS CA CB sing N N 395 LYS CA HA sing N N 396 LYS C O doub N N 397 LYS C OXT sing N N 398 LYS CB CG sing N N 399 LYS CB HB2 sing N N 400 LYS CB HB3 sing N N 401 LYS CG CD sing N N 402 LYS CG HG2 sing N N 403 LYS CG HG3 sing N N 404 LYS CD CE sing N N 405 LYS CD HD2 sing N N 406 LYS CD HD3 sing N N 407 LYS CE NZ sing N N 408 LYS CE HE2 sing N N 409 LYS CE HE3 sing N N 410 LYS NZ HZ1 sing N N 411 LYS NZ HZ2 sing N N 412 LYS NZ HZ3 sing N N 413 LYS OXT HXT sing N N 414 MET N CA sing N N 415 MET N H sing N N 416 MET N H2 sing N N 417 MET CA C sing N N 418 MET CA CB sing N N 419 MET CA HA sing N N 420 MET C O doub N N 421 MET C OXT sing N N 422 MET CB CG sing N N 423 MET CB HB2 sing N N 424 MET CB HB3 sing N N 425 MET CG SD sing N N 426 MET CG HG2 sing N N 427 MET CG HG3 sing N N 428 MET SD CE sing N N 429 MET CE HE1 sing N N 430 MET CE HE2 sing N N 431 MET CE HE3 sing N N 432 MET OXT HXT sing N N 433 PHE N CA sing N N 434 PHE N H sing N N 435 PHE N H2 sing N N 436 PHE CA C sing N N 437 PHE CA CB sing N N 438 PHE CA HA sing N N 439 PHE C O doub N N 440 PHE C OXT sing N N 441 PHE CB CG sing N N 442 PHE CB HB2 sing N N 443 PHE CB HB3 sing N N 444 PHE CG CD1 doub Y N 445 PHE CG CD2 sing Y N 446 PHE CD1 CE1 sing Y N 447 PHE CD1 HD1 sing N N 448 PHE CD2 CE2 doub Y N 449 PHE CD2 HD2 sing N N 450 PHE CE1 CZ doub Y N 451 PHE CE1 HE1 sing N N 452 PHE CE2 CZ sing Y N 453 PHE CE2 HE2 sing N N 454 PHE CZ HZ sing N N 455 PHE OXT HXT sing N N 456 PRO N CA sing N N 457 PRO N CD sing N N 458 PRO N H sing N N 459 PRO CA C sing N N 460 PRO CA CB sing N N 461 PRO CA HA sing N N 462 PRO C O doub N N 463 PRO C OXT sing N N 464 PRO CB CG sing N N 465 PRO CB HB2 sing N N 466 PRO CB HB3 sing N N 467 PRO CG CD sing N N 468 PRO CG HG2 sing N N 469 PRO CG HG3 sing N N 470 PRO CD HD2 sing N N 471 PRO CD HD3 sing N N 472 PRO OXT HXT sing N N 473 SER N CA sing N N 474 SER N H sing N N 475 SER N H2 sing N N 476 SER CA C sing N N 477 SER CA CB sing N N 478 SER CA HA sing N N 479 SER C O doub N N 480 SER C OXT sing N N 481 SER CB OG sing N N 482 SER CB HB2 sing N N 483 SER CB HB3 sing N N 484 SER OG HG sing N N 485 SER OXT HXT sing N N 486 THR N CA sing N N 487 THR N H sing N N 488 THR N H2 sing N N 489 THR CA C sing N N 490 THR CA CB sing N N 491 THR CA HA sing N N 492 THR C O doub N N 493 THR C OXT sing N N 494 THR CB OG1 sing N N 495 THR CB CG2 sing N N 496 THR CB HB sing N N 497 THR OG1 HG1 sing N N 498 THR CG2 HG21 sing N N 499 THR CG2 HG22 sing N N 500 THR CG2 HG23 sing N N 501 THR OXT HXT sing N N 502 TRP N CA sing N N 503 TRP N H sing N N 504 TRP N H2 sing N N 505 TRP CA C sing N N 506 TRP CA CB sing N N 507 TRP CA HA sing N N 508 TRP C O doub N N 509 TRP C OXT sing N N 510 TRP CB CG sing N N 511 TRP CB HB2 sing N N 512 TRP CB HB3 sing N N 513 TRP CG CD1 doub Y N 514 TRP CG CD2 sing Y N 515 TRP CD1 NE1 sing Y N 516 TRP CD1 HD1 sing N N 517 TRP CD2 CE2 doub Y N 518 TRP CD2 CE3 sing Y N 519 TRP NE1 CE2 sing Y N 520 TRP NE1 HE1 sing N N 521 TRP CE2 CZ2 sing Y N 522 TRP CE3 CZ3 doub Y N 523 TRP CE3 HE3 sing N N 524 TRP CZ2 CH2 doub Y N 525 TRP CZ2 HZ2 sing N N 526 TRP CZ3 CH2 sing Y N 527 TRP CZ3 HZ3 sing N N 528 TRP CH2 HH2 sing N N 529 TRP OXT HXT sing N N 530 TYR N CA sing N N 531 TYR N H sing N N 532 TYR N H2 sing N N 533 TYR CA C sing N N 534 TYR CA CB sing N N 535 TYR CA HA sing N N 536 TYR C O doub N N 537 TYR C OXT sing N N 538 TYR CB CG sing N N 539 TYR CB HB2 sing N N 540 TYR CB HB3 sing N N 541 TYR CG CD1 doub Y N 542 TYR CG CD2 sing Y N 543 TYR CD1 CE1 sing Y N 544 TYR CD1 HD1 sing N N 545 TYR CD2 CE2 doub Y N 546 TYR CD2 HD2 sing N N 547 TYR CE1 CZ doub Y N 548 TYR CE1 HE1 sing N N 549 TYR CE2 CZ sing Y N 550 TYR CE2 HE2 sing N N 551 TYR CZ OH sing N N 552 TYR OH HH sing N N 553 TYR OXT HXT sing N N 554 VAL N CA sing N N 555 VAL N H sing N N 556 VAL N H2 sing N N 557 VAL CA C sing N N 558 VAL CA CB sing N N 559 VAL CA HA sing N N 560 VAL C O doub N N 561 VAL C OXT sing N N 562 VAL CB CG1 sing N N 563 VAL CB CG2 sing N N 564 VAL CB HB sing N N 565 VAL CG1 HG11 sing N N 566 VAL CG1 HG12 sing N N 567 VAL CG1 HG13 sing N N 568 VAL CG2 HG21 sing N N 569 VAL CG2 HG22 sing N N 570 VAL CG2 HG23 sing N N 571 VAL OXT HXT sing N N 572 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 4ENK 'double helix' 4ENK 'b-form double helix' 4ENK 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 B DC 2 1_555 C DG 13 1_555 0.163 -0.222 1.138 -18.625 -13.044 -6.926 1 B_DC2:DG26_C B 2 ? C 26 ? 19 1 1 B DC 3 1_555 C DG 12 1_555 -0.427 -0.224 0.542 -10.904 -5.256 -4.471 2 B_DC3:DG25_C B 3 ? C 25 ? 19 1 1 B DA 4 1_555 C DT 11 1_555 0.181 -0.220 0.501 3.880 -4.167 -13.604 3 B_DA4:DT24_C B 4 ? C 24 ? 20 1 1 B DT 5 1_555 C DA 10 1_555 -1.274 -0.236 0.249 -1.570 -6.286 -3.481 4 B_DT5:DA23_C B 5 ? C 23 ? 20 1 1 B DG 6 1_555 C DC 9 1_555 -0.257 -0.204 -0.193 2.186 -10.838 -0.424 5 B_DG6:DC22_C B 6 ? C 22 ? 19 1 1 B DC 8 1_555 C DG 7 1_555 -0.983 -0.030 0.091 -1.009 -6.567 -4.817 6 B_DC8:DG20_C B 8 ? C 20 ? 19 1 1 B DT 9 1_555 C DA 6 1_555 0.252 1.899 -0.195 -0.207 -5.287 -106.816 7 B_DT9:DA19_C B 9 ? C 19 ? ? ? 1 B DA 10 1_555 C DT 5 1_555 0.596 -0.021 0.605 17.518 -10.062 -7.689 8 B_DA10:DT18_C B 10 ? C 18 ? 20 1 1 B DG 11 1_555 C DC 4 1_555 0.276 -0.057 0.855 6.538 -13.696 -4.789 9 B_DG11:DC17_C B 11 ? C 17 ? 19 1 1 B DT 12 1_555 C DA 3 1_555 -0.724 -0.406 1.062 0.587 -2.855 -1.196 10 B_DT12:DA16_C B 12 ? C 16 ? 20 1 1 B DA 13 1_555 C DT 2 1_555 0.084 0.065 0.445 1.287 -17.530 -0.132 11 B_DA13:DT15_C B 13 ? C 15 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 B DC 2 1_555 C DG 13 1_555 B DC 3 1_555 C DG 12 1_555 0.378 -1.127 2.988 5.568 4.594 29.401 -2.996 0.289 2.806 8.883 -10.766 30.255 1 BB_DC2DC3:DG25DG26_CC B 2 ? C 26 ? B 3 ? C 25 ? 1 B DC 3 1_555 C DG 12 1_555 B DA 4 1_555 C DT 11 1_555 -0.545 -0.605 2.971 -1.973 -1.306 32.592 -0.868 0.656 3.019 -2.323 3.510 32.675 2 BB_DC3DA4:DT24DG25_CC B 3 ? C 25 ? B 4 ? C 24 ? 1 B DA 4 1_555 C DT 11 1_555 B DT 5 1_555 C DA 10 1_555 0.456 -1.248 3.486 0.475 5.042 24.597 -4.402 -0.905 3.178 11.677 -1.100 25.105 3 BB_DA4DT5:DA23DT24_CC B 4 ? C 24 ? B 5 ? C 23 ? 1 B DT 5 1_555 C DA 10 1_555 B DG 6 1_555 C DC 9 1_555 0.560 0.935 3.264 5.729 3.680 46.610 0.862 -0.222 3.366 4.622 -7.196 47.077 4 BB_DT5DG6:DC22DA23_CC B 5 ? C 23 ? B 6 ? C 22 ? 1 B DG 6 1_555 C DC 9 1_555 B DC 8 1_555 C DG 7 1_555 0.626 -1.679 6.861 -6.686 27.848 47.142 -5.160 -1.481 5.091 31.653 7.599 54.732 5 BB_DG6DC8:DG20DC22_CC B 6 ? C 22 ? B 8 ? C 20 ? 1 B DC 8 1_555 C DG 7 1_555 B DT 9 1_555 C DA 6 1_555 0.493 -1.202 3.189 6.285 -1.174 87.955 -0.839 -0.224 3.224 -0.844 -4.521 88.140 6 BB_DC8DT9:DA19DG20_CC B 8 ? C 20 ? B 9 ? C 19 ? 1 B DT 9 1_555 C DA 6 1_555 B DA 10 1_555 C DT 5 1_555 -0.145 1.032 3.041 -4.170 -3.497 -19.854 -1.421 -2.154 3.080 9.905 -11.810 -20.580 7 BB_DT9DA10:DT18DA19_CC B 9 ? C 19 ? B 10 ? C 18 ? 1 B DA 10 1_555 C DT 5 1_555 B DG 11 1_555 C DC 4 1_555 0.763 -0.696 3.554 0.371 4.360 35.340 -1.820 -1.190 3.453 7.148 -0.608 35.602 8 BB_DA10DG11:DC17DT18_CC B 10 ? C 18 ? B 11 ? C 17 ? 1 B DG 11 1_555 C DC 4 1_555 B DT 12 1_555 C DA 3 1_555 0.219 -0.875 3.418 1.296 -0.721 25.669 -1.754 -0.110 3.448 -1.621 -2.914 25.711 9 BB_DG11DT12:DA16DC17_CC B 11 ? C 17 ? B 12 ? C 16 ? 1 B DT 12 1_555 C DA 3 1_555 B DA 13 1_555 C DT 2 1_555 0.208 -0.547 3.139 6.474 -0.653 39.466 -0.728 0.414 3.141 -0.959 -9.509 39.978 10 BB_DT12DA13:DT15DA16_CC B 12 ? C 16 ? B 13 ? C 15 ? # _pdbx_entity_nonpoly.entity_id 4 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 3GVA _pdbx_initial_refinement_model.details 'PDB ENTRY 3GVA' #