HEADER TRANSFERASE/INHIBITOR 13-APR-12 4ENY TITLE CRYSTAL STRUCTURE OF PIM-1 KINASE IN COMPLEX WITH (2E,5Z)-2-(2- TITLE 2 CHLOROPHENYLIMINO)-5-(4-HYDROXY-3-METHOXYBENZYLIDENE)THIAZOLIDIN-4- TITLE 3 ONE COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE/THREONINE-PROTEIN KINASE PIM-1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PROTEIN KINASE DOMAIN, UNP RESIDUES 120-404; COMPND 5 EC: 2.7.11.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PIM1; SOURCE 6 EXPRESSION_SYSTEM: CELL-FREE PROTEIN SYNTHESIS; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PCR2.1-TOPO KEYWDS PIM-1 KINASE, TRANSFERASE-INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR L.J.PARKER,N.HANDA,S.YOKOYAMA REVDAT 3 08-NOV-23 4ENY 1 REMARK SEQADV REVDAT 2 03-OCT-12 4ENY 1 JRNL REVDAT 1 08-AUG-12 4ENY 0 JRNL AUTH L.J.PARKER,H.WATANABE,K.TSUGANEZAWA,Y.TOMABECHI,N.HANDA, JRNL AUTH 2 M.SHIROUZU,H.YUKI,T.HONMA,N.OGAWA,T.NAGANO,S.YOKOYAMA, JRNL AUTH 3 A.TANAKA JRNL TITL FLEXIBILITY OF THE P-LOOP OF PIM-1 KINASE: OBSERVATION OF A JRNL TITL 2 NOVEL CONFORMATION INDUCED BY INTERACTION WITH AN INHIBITOR JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 68 860 2012 JRNL REFN ESSN 1744-3091 JRNL PMID 22869110 JRNL DOI 10.1107/S1744309112027108 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.7.3_928 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.67 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 10689 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 541 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 31.6758 - 4.4440 1.00 2587 130 0.1625 0.1805 REMARK 3 2 4.4440 - 3.5289 1.00 2532 131 0.1487 0.1988 REMARK 3 3 3.5289 - 3.0832 1.00 2517 137 0.1687 0.2390 REMARK 3 4 3.0832 - 2.8015 1.00 2512 143 0.2675 0.3782 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.86 REMARK 3 K_SOL : 0.36 REMARK 3 B_SOL : 34.92 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.470 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.600 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 64.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.79 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.32500 REMARK 3 B22 (A**2) : 2.32500 REMARK 3 B33 (A**2) : -4.64990 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 2242 REMARK 3 ANGLE : 0.777 3037 REMARK 3 CHIRALITY : 0.059 321 REMARK 3 PLANARITY : 0.004 389 REMARK 3 DIHEDRAL : 13.792 823 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 37:95) REMARK 3 ORIGIN FOR THE GROUP (A): -69.2835 114.1782 6.8365 REMARK 3 T TENSOR REMARK 3 T11: 0.1227 T22: 0.2473 REMARK 3 T33: 0.0409 T12: -0.1610 REMARK 3 T13: 0.0434 T23: 0.0577 REMARK 3 L TENSOR REMARK 3 L11: 2.5528 L22: 3.5979 REMARK 3 L33: 3.2094 L12: 1.0387 REMARK 3 L13: 1.0565 L23: -0.3585 REMARK 3 S TENSOR REMARK 3 S11: -0.0014 S12: -0.1899 S13: -0.1378 REMARK 3 S21: 0.1966 S22: -0.1678 S23: 0.0059 REMARK 3 S31: 0.3400 S32: -0.0666 S33: 0.0991 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 96:140) REMARK 3 ORIGIN FOR THE GROUP (A): -66.8887 122.6557 3.1116 REMARK 3 T TENSOR REMARK 3 T11: 0.1420 T22: 0.2566 REMARK 3 T33: 0.1739 T12: -0.0174 REMARK 3 T13: -0.0707 T23: -0.0113 REMARK 3 L TENSOR REMARK 3 L11: 3.2334 L22: 4.2060 REMARK 3 L33: 3.6578 L12: 1.5916 REMARK 3 L13: -1.8273 L23: -1.7221 REMARK 3 S TENSOR REMARK 3 S11: 0.0327 S12: 0.1732 S13: 0.1119 REMARK 3 S21: 0.0816 S22: -0.0158 S23: 0.2329 REMARK 3 S31: 0.0882 S32: -0.5484 S33: -0.0457 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 141:250) REMARK 3 ORIGIN FOR THE GROUP (A): -50.7957 123.5501 -0.1596 REMARK 3 T TENSOR REMARK 3 T11: 0.0973 T22: 0.1066 REMARK 3 T33: 0.0977 T12: -0.0238 REMARK 3 T13: -0.0376 T23: 0.0047 REMARK 3 L TENSOR REMARK 3 L11: 2.6043 L22: 1.5510 REMARK 3 L33: 2.4043 L12: -0.6322 REMARK 3 L13: 0.4493 L23: -0.4898 REMARK 3 S TENSOR REMARK 3 S11: 0.0588 S12: -0.1278 S13: -0.0280 REMARK 3 S21: -0.1021 S22: 0.0261 S23: -0.0588 REMARK 3 S31: 0.3149 S32: 0.0139 S33: -0.0663 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 251:290) REMARK 3 ORIGIN FOR THE GROUP (A): -42.5148 133.4007 -4.3928 REMARK 3 T TENSOR REMARK 3 T11: 0.0788 T22: 0.1680 REMARK 3 T33: 0.2093 T12: -0.0277 REMARK 3 T13: 0.0329 T23: -0.0264 REMARK 3 L TENSOR REMARK 3 L11: 3.7273 L22: 3.7781 REMARK 3 L33: 4.8905 L12: -0.4999 REMARK 3 L13: 0.3090 L23: -0.5585 REMARK 3 S TENSOR REMARK 3 S11: 0.1029 S12: -0.2220 S13: 0.3027 REMARK 3 S21: 0.1216 S22: -0.0251 S23: -0.5391 REMARK 3 S31: -0.3361 S32: 0.5193 S33: -0.0753 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 291:305) REMARK 3 ORIGIN FOR THE GROUP (A): -61.9586 143.4078 -0.7374 REMARK 3 T TENSOR REMARK 3 T11: 0.1149 T22: 0.1078 REMARK 3 T33: 0.2747 T12: 0.1211 REMARK 3 T13: 0.0806 T23: 0.0442 REMARK 3 L TENSOR REMARK 3 L11: 1.6740 L22: 7.6713 REMARK 3 L33: 5.1202 L12: -1.1636 REMARK 3 L13: 0.8729 L23: 1.3705 REMARK 3 S TENSOR REMARK 3 S11: -0.0294 S12: -0.1525 S13: 0.3595 REMARK 3 S21: -0.0990 S22: -0.1156 S23: 0.2604 REMARK 3 S31: -0.3555 S32: -0.5631 S33: 0.2291 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4ENY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 27-APR-12. REMARK 100 THE DEPOSITION ID IS D_1000071854. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-SEP-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.2.25 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10721 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.801 REMARK 200 RESOLUTION RANGE LOW (A) : 37.216 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 12.50 REMARK 200 R MERGE (I) : 0.07900 REMARK 200 R SYM (I) : 0.07900 REMARK 200 FOR THE DATA SET : 29.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.95 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 12.50 REMARK 200 R MERGE FOR SHELL (I) : 0.40300 REMARK 200 R SYM FOR SHELL (I) : 0.40300 REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.3.0 REMARK 200 STARTING MODEL: 3UMX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM CITRATE BUFFER, PH 5.5, 200MM REMARK 280 NACL, 1M NH4HPO4, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.97533 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 26.98767 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 40.48150 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 13.49383 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 67.46917 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 28 REMARK 465 LYS A 29 REMARK 465 GLU A 30 REMARK 465 LYS A 31 REMARK 465 GLU A 32 REMARK 465 PRO A 33 REMARK 465 LEU A 34 REMARK 465 GLU A 35 REMARK 465 SER A 36 REMARK 465 GLY A 48 REMARK 465 GLU A 79 REMARK 465 LEU A 80 REMARK 465 PRO A 81 REMARK 465 ASN A 82 REMARK 465 GLY A 83 REMARK 465 THR A 84 REMARK 465 GLY A 99 REMARK 465 SER A 306 REMARK 465 LEU A 307 REMARK 465 SER A 308 REMARK 465 PRO A 309 REMARK 465 GLY A 310 REMARK 465 PRO A 311 REMARK 465 SER A 312 REMARK 465 LYS A 313 REMARK 465 SER A 314 REMARK 465 GLY A 315 REMARK 465 PRO A 316 REMARK 465 SER A 317 REMARK 465 SER A 318 REMARK 465 GLY A 319 REMARK 465 GLU A 320 REMARK 465 ASN A 321 REMARK 465 LEU A 322 REMARK 465 TYR A 323 REMARK 465 PHE A 324 REMARK 465 GLN A 325 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 72 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 60 14.34 -140.56 REMARK 500 ASP A 167 39.53 -151.38 REMARK 500 ASP A 176 96.65 -69.24 REMARK 500 ASP A 186 81.83 56.15 REMARK 500 ASP A 202 33.60 -140.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE DMS A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE J19 A 404 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3UMW RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF PIM1 KINASE IN COMPLEX WITH INHIBITOR (Z)-2- REMARK 900 [(1H-INDAZOL-3-YL)METHYLENE]-6-METHOXY-7-(PIPERAZIN-1-YLMETHYL) REMARK 900 BENZOFURAN-3(2H)-ONE REMARK 900 RELATED ID: 3UMX RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF PIM1 KINASE IN COMPLEX WITH INHIBITOR (Z)-2- REMARK 900 [(1H-INDOL-3-YL)METHYLENE]-7-(AZEPAN-1-YLMETHYL)-6- REMARK 900 HYDROXYBENZOFURAN-3(2H)-ONE REMARK 900 RELATED ID: 3UIX RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF PIM1 KINASE IN COMPLEX WITH SMALL MOLECULE REMARK 900 INHIBITOR REMARK 900 RELATED ID: 4ENX RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF PIM1 KINASE IN COMPLEX WITH (2E,5Z)-2-(2- REMARK 900 CHLOROPHENYLIMINO)-5-(4-HYDROXY-3-NITROBENZYLIDENE)THIAZOLIDIN-4-ONE DBREF 4ENY A 29 313 UNP P11309 PIM1_HUMAN 120 404 SEQADV 4ENY MET A 28 UNP P11309 EXPRESSION TAG SEQADV 4ENY SER A 314 UNP P11309 EXPRESSION TAG SEQADV 4ENY GLY A 315 UNP P11309 EXPRESSION TAG SEQADV 4ENY PRO A 316 UNP P11309 EXPRESSION TAG SEQADV 4ENY SER A 317 UNP P11309 EXPRESSION TAG SEQADV 4ENY SER A 318 UNP P11309 EXPRESSION TAG SEQADV 4ENY GLY A 319 UNP P11309 EXPRESSION TAG SEQADV 4ENY GLU A 320 UNP P11309 EXPRESSION TAG SEQADV 4ENY ASN A 321 UNP P11309 EXPRESSION TAG SEQADV 4ENY LEU A 322 UNP P11309 EXPRESSION TAG SEQADV 4ENY TYR A 323 UNP P11309 EXPRESSION TAG SEQADV 4ENY PHE A 324 UNP P11309 EXPRESSION TAG SEQADV 4ENY GLN A 325 UNP P11309 EXPRESSION TAG SEQRES 1 A 298 MET LYS GLU LYS GLU PRO LEU GLU SER GLN TYR GLN VAL SEQRES 2 A 298 GLY PRO LEU LEU GLY SER GLY GLY PHE GLY SER VAL TYR SEQRES 3 A 298 SER GLY ILE ARG VAL SER ASP ASN LEU PRO VAL ALA ILE SEQRES 4 A 298 LYS HIS VAL GLU LYS ASP ARG ILE SER ASP TRP GLY GLU SEQRES 5 A 298 LEU PRO ASN GLY THR ARG VAL PRO MET GLU VAL VAL LEU SEQRES 6 A 298 LEU LYS LYS VAL SER SER GLY PHE SER GLY VAL ILE ARG SEQRES 7 A 298 LEU LEU ASP TRP PHE GLU ARG PRO ASP SER PHE VAL LEU SEQRES 8 A 298 ILE LEU GLU ARG PRO GLU PRO VAL GLN ASP LEU PHE ASP SEQRES 9 A 298 PHE ILE THR GLU ARG GLY ALA LEU GLN GLU GLU LEU ALA SEQRES 10 A 298 ARG SER PHE PHE TRP GLN VAL LEU GLU ALA VAL ARG HIS SEQRES 11 A 298 CYS HIS ASN CYS GLY VAL LEU HIS ARG ASP ILE LYS ASP SEQRES 12 A 298 GLU ASN ILE LEU ILE ASP LEU ASN ARG GLY GLU LEU LYS SEQRES 13 A 298 LEU ILE ASP PHE GLY SER GLY ALA LEU LEU LYS ASP THR SEQRES 14 A 298 VAL TYR THR ASP PHE ASP GLY THR ARG VAL TYR SER PRO SEQRES 15 A 298 PRO GLU TRP ILE ARG TYR HIS ARG TYR HIS GLY ARG SER SEQRES 16 A 298 ALA ALA VAL TRP SER LEU GLY ILE LEU LEU TYR ASP MET SEQRES 17 A 298 VAL CYS GLY ASP ILE PRO PHE GLU HIS ASP GLU GLU ILE SEQRES 18 A 298 ILE ARG GLY GLN VAL PHE PHE ARG GLN ARG VAL SER SER SEQRES 19 A 298 GLU CYS GLN HIS LEU ILE ARG TRP CYS LEU ALA LEU ARG SEQRES 20 A 298 PRO SER ASP ARG PRO THR PHE GLU GLU ILE GLN ASN HIS SEQRES 21 A 298 PRO TRP MET GLN ASP VAL LEU LEU PRO GLN GLU THR ALA SEQRES 22 A 298 GLU ILE HIS LEU HIS SER LEU SER PRO GLY PRO SER LYS SEQRES 23 A 298 SER GLY PRO SER SER GLY GLU ASN LEU TYR PHE GLN HET DMS A 401 4 HET GOL A 402 6 HET PO4 A 403 5 HET J19 A 404 24 HETNAM DMS DIMETHYL SULFOXIDE HETNAM GOL GLYCEROL HETNAM PO4 PHOSPHATE ION HETNAM J19 (2Z,5Z)-2-[(2-CHLOROPHENYL)IMINO]-5-(4-HYDROXY-3- HETNAM 2 J19 METHOXYBENZYLIDENE)-1,3-THIAZOLIDIN-4-ONE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 DMS C2 H6 O S FORMUL 3 GOL C3 H8 O3 FORMUL 4 PO4 O4 P 3- FORMUL 5 J19 C17 H13 CL N2 O3 S FORMUL 6 HOH *60(H2 O) HELIX 1 1 ASP A 72 ILE A 74 5 3 HELIX 2 2 PRO A 87 VAL A 96 1 10 HELIX 3 3 LEU A 129 GLY A 137 1 9 HELIX 4 4 GLN A 140 CYS A 161 1 22 HELIX 5 5 LYS A 169 GLU A 171 5 3 HELIX 6 6 THR A 204 SER A 208 5 5 HELIX 7 7 PRO A 209 HIS A 216 1 8 HELIX 8 8 HIS A 219 GLY A 238 1 20 HELIX 9 9 HIS A 244 GLY A 251 1 8 HELIX 10 10 SER A 260 LEU A 271 1 12 HELIX 11 11 ARG A 274 ARG A 278 5 5 HELIX 12 12 THR A 280 ASN A 286 1 7 HELIX 13 13 HIS A 287 GLN A 291 5 5 HELIX 14 14 LEU A 295 LEU A 304 1 10 SHEET 1 A 5 TYR A 38 SER A 46 0 SHEET 2 A 5 SER A 51 ARG A 57 -1 O SER A 54 N GLY A 41 SHEET 3 A 5 PRO A 63 GLU A 70 -1 O HIS A 68 N SER A 51 SHEET 4 A 5 SER A 115 GLU A 121 -1 O LEU A 120 N ALA A 65 SHEET 5 A 5 LEU A 106 GLU A 111 -1 N ASP A 108 O ILE A 119 SHEET 1 B 3 VAL A 126 ASP A 128 0 SHEET 2 B 3 ILE A 173 ASP A 176 -1 O ILE A 175 N GLN A 127 SHEET 3 B 3 GLU A 181 LEU A 184 -1 O GLU A 181 N ASP A 176 SHEET 1 C 2 VAL A 163 LEU A 164 0 SHEET 2 C 2 ALA A 191 LEU A 192 -1 O ALA A 191 N LEU A 164 CISPEP 1 GLU A 124 PRO A 125 0 0.30 SITE 1 AC1 6 PHE A 130 ILE A 133 ASP A 170 ASP A 234 SITE 2 AC1 6 GLY A 238 ASP A 239 SITE 1 AC2 4 GLN A 127 ASP A 128 ASP A 131 J19 A 404 SITE 1 AC3 4 ARG A 258 SER A 260 SER A 261 HOH A 556 SITE 1 AC4 13 GLY A 45 SER A 46 PHE A 49 GLY A 50 SITE 2 AC4 13 VAL A 52 ALA A 65 LYS A 67 LEU A 120 SITE 3 AC4 13 GLU A 121 VAL A 126 LEU A 174 ASP A 186 SITE 4 AC4 13 GOL A 402 CRYST1 96.765 96.765 80.963 90.00 90.00 120.00 P 65 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010334 0.005967 0.000000 0.00000 SCALE2 0.000000 0.011933 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012351 0.00000