HEADER PROTEIN BINDING 13-APR-12 4EO7 TITLE CRYSTAL STRUCTURE OF THE TIR DOMAIN OF HUMAN MYELOID DIFFERENTIATION TITLE 2 PRIMARY RESPONSE PROTEIN 88. COMPND MOL_ID: 1; COMPND 2 MOLECULE: MYELOID DIFFERENTIATION PRIMARY RESPONSE PROTEIN MYD88; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: TIR DOMAIN, UNP RESIDUES 157-296; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MYD88; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET30A KEYWDS ADAPTER PROTEIN, TOLL LIKE RECEPTOR, BETA-ALPHA-BETA FOLD, PARALLEL KEYWDS 2 BETA SHEET, TIR-DOMAIN, INNATE IMMUNE SIGNALING, SIGNALING PROTEIN, KEYWDS 3 TIRAP/MAL, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR G.A.SNYDER,C.CIRL,J.S.JIANG,P.CHEN,T.SMITH,T.S.XIAO REVDAT 5 06-DEC-23 4EO7 1 REMARK REVDAT 4 13-SEP-23 4EO7 1 REMARK SEQADV LINK REVDAT 3 08-MAY-13 4EO7 1 JRNL REVDAT 2 24-APR-13 4EO7 1 JRNL REVDAT 1 10-APR-13 4EO7 0 JRNL AUTH G.A.SNYDER,C.CIRL,J.JIANG,K.CHEN,A.WALDHUBER,P.SMITH, JRNL AUTH 2 F.ROMMLER,N.SNYDER,T.FRESQUEZ,S.DURR,N.TJANDRA,T.MIETHKE, JRNL AUTH 3 T.S.XIAO JRNL TITL MOLECULAR MECHANISMS FOR THE SUBVERSION OF MYD88 SIGNALING JRNL TITL 2 BY TCPC FROM VIRULENT UROPATHOGENIC ESCHERICHIA COLI. JRNL REF PROC.NATL.ACAD.SCI.USA V. 110 6985 2013 JRNL REFN ISSN 0027-8424 JRNL PMID 23569230 JRNL DOI 10.1073/PNAS.1215770110 REMARK 2 REMARK 2 RESOLUTION. 1.45 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.3_928) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.45 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.24 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 3 NUMBER OF REFLECTIONS : 22962 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.170 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.208 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 1162 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 43.2584 - 2.8986 1.00 3024 160 0.1584 0.1953 REMARK 3 2 2.8986 - 2.3007 1.00 2894 153 0.1611 0.1896 REMARK 3 3 2.3007 - 2.0099 0.99 2864 151 0.1623 0.2019 REMARK 3 4 2.0099 - 1.8261 0.99 2818 151 0.1696 0.2046 REMARK 3 5 1.8261 - 1.6952 0.99 2807 148 0.1689 0.1953 REMARK 3 6 1.6952 - 1.5953 0.95 2697 142 0.1816 0.2481 REMARK 3 7 1.5953 - 1.5154 0.87 2429 134 0.1991 0.2760 REMARK 3 8 1.5154 - 1.4490 0.81 2267 123 0.2297 0.2971 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.00 REMARK 3 SHRINKAGE RADIUS : 0.73 REMARK 3 K_SOL : 0.35 REMARK 3 B_SOL : 37.69 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.070 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.55400 REMARK 3 B22 (A**2) : -0.28060 REMARK 3 B33 (A**2) : 0.23130 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 1262 REMARK 3 ANGLE : 0.954 1724 REMARK 3 CHIRALITY : 0.069 193 REMARK 3 PLANARITY : 0.005 219 REMARK 3 DIHEDRAL : 13.623 501 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 153:168) REMARK 3 ORIGIN FOR THE GROUP (A): 2.4673 1.0682 6.6609 REMARK 3 T TENSOR REMARK 3 T11: 0.0713 T22: 0.0919 REMARK 3 T33: 0.0699 T12: -0.0262 REMARK 3 T13: -0.0016 T23: 0.0340 REMARK 3 L TENSOR REMARK 3 L11: 2.7936 L22: 1.7909 REMARK 3 L33: 1.6078 L12: -1.6663 REMARK 3 L13: 1.7901 L23: -1.1765 REMARK 3 S TENSOR REMARK 3 S11: 0.1659 S12: 0.0862 S13: -0.1803 REMARK 3 S21: -0.0961 S22: 0.0902 S23: 0.1411 REMARK 3 S31: 0.1895 S32: -0.1883 S33: -0.1670 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 169:183) REMARK 3 ORIGIN FOR THE GROUP (A): 11.4647 9.8729 14.7297 REMARK 3 T TENSOR REMARK 3 T11: 0.0433 T22: 0.0315 REMARK 3 T33: 0.0696 T12: 0.0065 REMARK 3 T13: 0.0024 T23: 0.0034 REMARK 3 L TENSOR REMARK 3 L11: 1.3886 L22: 4.2193 REMARK 3 L33: 2.6684 L12: 0.0652 REMARK 3 L13: -0.4869 L23: -0.6612 REMARK 3 S TENSOR REMARK 3 S11: 0.0123 S12: 0.0591 S13: 0.1319 REMARK 3 S21: -0.0129 S22: -0.0246 S23: 0.0795 REMARK 3 S31: -0.1923 S32: -0.0973 S33: 0.0345 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 184:195) REMARK 3 ORIGIN FOR THE GROUP (A): 6.8200 6.7211 4.8782 REMARK 3 T TENSOR REMARK 3 T11: 0.0653 T22: 0.0834 REMARK 3 T33: 0.0696 T12: 0.0061 REMARK 3 T13: -0.0154 T23: 0.0109 REMARK 3 L TENSOR REMARK 3 L11: 2.6936 L22: 5.0722 REMARK 3 L33: 3.9586 L12: 2.5759 REMARK 3 L13: -2.4879 L23: -4.4654 REMARK 3 S TENSOR REMARK 3 S11: 0.0892 S12: 0.0412 S13: 0.1480 REMARK 3 S21: 0.0338 S22: 0.1322 S23: 0.2946 REMARK 3 S31: -0.0765 S32: -0.1596 S33: -0.1524 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 196:208) REMARK 3 ORIGIN FOR THE GROUP (A): 0.8473 6.0063 12.4647 REMARK 3 T TENSOR REMARK 3 T11: 0.0566 T22: 0.1223 REMARK 3 T33: 0.1062 T12: 0.0266 REMARK 3 T13: -0.0178 T23: 0.0102 REMARK 3 L TENSOR REMARK 3 L11: 1.5122 L22: 2.9465 REMARK 3 L33: 4.1776 L12: 0.5422 REMARK 3 L13: 0.2448 L23: 3.3746 REMARK 3 S TENSOR REMARK 3 S11: -0.0264 S12: 0.0230 S13: 0.1247 REMARK 3 S21: -0.3047 S22: 0.0011 S23: 0.2640 REMARK 3 S31: -0.2548 S32: -0.3892 S33: 0.0265 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 209:215) REMARK 3 ORIGIN FOR THE GROUP (A): 2.0405 -9.7176 8.8214 REMARK 3 T TENSOR REMARK 3 T11: 0.1283 T22: 0.0871 REMARK 3 T33: 0.1920 T12: -0.0730 REMARK 3 T13: -0.0800 T23: 0.0255 REMARK 3 L TENSOR REMARK 3 L11: 3.8725 L22: 2.5657 REMARK 3 L33: 2.6218 L12: 1.4136 REMARK 3 L13: -1.9027 L23: -0.0857 REMARK 3 S TENSOR REMARK 3 S11: 0.0902 S12: -0.1319 S13: -0.0704 REMARK 3 S21: 0.1259 S22: -0.1321 S23: 0.2612 REMARK 3 S31: 0.2240 S32: -0.2100 S33: 0.0427 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 216:230) REMARK 3 ORIGIN FOR THE GROUP (A): 15.0984 -2.9041 15.7621 REMARK 3 T TENSOR REMARK 3 T11: 0.0622 T22: 0.0191 REMARK 3 T33: 0.0549 T12: 0.0009 REMARK 3 T13: 0.0005 T23: 0.0138 REMARK 3 L TENSOR REMARK 3 L11: 2.5379 L22: 1.6593 REMARK 3 L33: 0.7015 L12: 0.9379 REMARK 3 L13: 0.5961 L23: 1.0699 REMARK 3 S TENSOR REMARK 3 S11: 0.0354 S12: -0.0729 S13: -0.1085 REMARK 3 S21: 0.0746 S22: -0.0073 S23: -0.0266 REMARK 3 S31: 0.0902 S32: -0.0471 S33: -0.0239 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 231:256) REMARK 3 ORIGIN FOR THE GROUP (A): 15.3399 -9.1778 11.1713 REMARK 3 T TENSOR REMARK 3 T11: 0.0860 T22: 0.0406 REMARK 3 T33: 0.0884 T12: 0.0058 REMARK 3 T13: -0.0005 T23: -0.0050 REMARK 3 L TENSOR REMARK 3 L11: 1.2109 L22: 3.4562 REMARK 3 L33: 1.4938 L12: 0.4994 REMARK 3 L13: 0.2971 L23: 0.7044 REMARK 3 S TENSOR REMARK 3 S11: -0.0114 S12: 0.0680 S13: -0.0966 REMARK 3 S21: -0.1981 S22: 0.0012 S23: 0.0112 REMARK 3 S31: 0.1153 S32: 0.0260 S33: 0.0074 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 257:265) REMARK 3 ORIGIN FOR THE GROUP (A): 24.5515 -0.4262 21.3484 REMARK 3 T TENSOR REMARK 3 T11: 0.0687 T22: 0.0233 REMARK 3 T33: 0.0964 T12: 0.0051 REMARK 3 T13: -0.0443 T23: 0.0045 REMARK 3 L TENSOR REMARK 3 L11: 2.2778 L22: 3.6061 REMARK 3 L33: 3.0613 L12: 0.1390 REMARK 3 L13: 0.6991 L23: -1.1683 REMARK 3 S TENSOR REMARK 3 S11: 0.0202 S12: 0.0371 S13: -0.2404 REMARK 3 S21: 0.0768 S22: 0.0297 S23: -0.2927 REMARK 3 S31: 0.3259 S32: 0.1952 S33: 0.0014 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 266:272) REMARK 3 ORIGIN FOR THE GROUP (A): 24.6078 -9.3522 11.4496 REMARK 3 T TENSOR REMARK 3 T11: 0.1550 T22: 0.0652 REMARK 3 T33: 0.1252 T12: 0.0253 REMARK 3 T13: 0.0071 T23: -0.0103 REMARK 3 L TENSOR REMARK 3 L11: 5.1120 L22: 5.7699 REMARK 3 L33: 5.1143 L12: -1.8287 REMARK 3 L13: 0.8117 L23: -4.5590 REMARK 3 S TENSOR REMARK 3 S11: 0.3438 S12: 0.0666 S13: -0.0344 REMARK 3 S21: -0.2488 S22: -0.2244 S23: -0.3306 REMARK 3 S31: -0.0681 S32: 0.2719 S33: -0.1139 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 273:296) REMARK 3 ORIGIN FOR THE GROUP (A): 21.1215 7.5807 5.0955 REMARK 3 T TENSOR REMARK 3 T11: 0.0554 T22: 0.0463 REMARK 3 T33: 0.0525 T12: 0.0044 REMARK 3 T13: 0.0257 T23: 0.0047 REMARK 3 L TENSOR REMARK 3 L11: 3.4914 L22: 3.5483 REMARK 3 L33: 3.4723 L12: 1.8420 REMARK 3 L13: 2.0657 L23: 1.0968 REMARK 3 S TENSOR REMARK 3 S11: -0.0543 S12: 0.2307 S13: -0.0615 REMARK 3 S21: -0.1717 S22: 0.0668 S23: -0.1085 REMARK 3 S31: 0.0368 S32: 0.2163 S33: -0.0348 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4EO7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-APR-12. REMARK 100 THE DEPOSITION ID IS D_1000071863. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-DEC-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : SI (111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23051 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.449 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.2 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.48 REMARK 200 COMPLETENESS FOR SHELL (%) : 80.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4DOM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.97 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG 3350, 0.1M BIS-TRIS PH REMARK 280 6.5,0.2M NACL, VAPOR DIFFUSION, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 17.43800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 33.33200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 28.40500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 33.33200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 17.43800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 28.40500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 184 40.73 -97.89 REMARK 500 ARG A 188 77.69 -110.44 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4DOM RELATED DB: PDB REMARK 900 METHYLATED MYD88 DBREF 4EO7 A 157 296 UNP Q99836 MYD88_HUMAN 157 296 SEQADV 4EO7 GLY A 153 UNP Q99836 EXPRESSION TAG SEQADV 4EO7 GLY A 154 UNP Q99836 EXPRESSION TAG SEQADV 4EO7 VAL A 155 UNP Q99836 EXPRESSION TAG SEQADV 4EO7 ASP A 156 UNP Q99836 EXPRESSION TAG SEQRES 1 A 144 GLY GLY VAL ASP MET PRO GLU ARG PHE ASP ALA PHE ILE SEQRES 2 A 144 CYS TYR CYS PRO SER ASP ILE GLN PHE VAL GLN GLU MET SEQRES 3 A 144 ILE ARG GLN LEU GLU GLN THR ASN TYR ARG LEU LYS LEU SEQRES 4 A 144 CYS VAL SER ASP ARG ASP VAL LEU PRO GLY THR CYS VAL SEQRES 5 A 144 TRP SER ILE ALA SER GLU LEU ILE GLU LYS ARG CYS ARG SEQRES 6 A 144 ARG MET VAL VAL VAL VAL SER ASP ASP TYR LEU GLN SER SEQRES 7 A 144 LYS GLU CYS ASP PHE GLN THR LYS PHE ALA LEU SER LEU SEQRES 8 A 144 SER PRO GLY ALA HIS GLN LYS ARG LEU ILE PRO ILE LYS SEQRES 9 A 144 TYR LYS ALA MET LYS LYS GLU PHE PRO SER ILE LEU ARG SEQRES 10 A 144 PHE ILE THR VAL CYS ASP TYR THR ASN PRO CSO THR LYS SEQRES 11 A 144 SER TRP PHE TRP THR ARG LEU ALA LYS ALA LEU SER LEU SEQRES 12 A 144 PRO MODRES 4EO7 CSO A 280 CYS S-HYDROXYCYSTEINE HET CSO A 280 7 HET MG A 301 1 HETNAM CSO S-HYDROXYCYSTEINE HETNAM MG MAGNESIUM ION FORMUL 1 CSO C3 H7 N O3 S FORMUL 2 MG MG 2+ FORMUL 3 HOH *232(H2 O) HELIX 1 1 CYS A 168 SER A 170 5 3 HELIX 2 2 ASP A 171 GLN A 184 1 14 HELIX 3 3 ASP A 195 LEU A 199 5 5 HELIX 4 4 ALA A 208 GLU A 210 5 3 HELIX 5 5 LEU A 211 ARG A 215 1 5 HELIX 6 6 ASP A 226 GLN A 229 5 4 HELIX 7 7 SER A 230 LEU A 243 1 14 HELIX 8 8 GLY A 246 ARG A 251 1 6 HELIX 9 9 PRO A 265 ARG A 269 5 5 HELIX 10 10 ASN A 278 LYS A 282 5 5 HELIX 11 11 TRP A 284 LEU A 295 1 12 SHEET 1 A 6 TRP A 205 SER A 206 0 SHEET 2 A 6 LEU A 191 VAL A 193 1 N VAL A 193 O TRP A 205 SHEET 3 A 6 PHE A 161 CYS A 166 1 N ILE A 165 O CYS A 192 SHEET 4 A 6 CYS A 216 VAL A 223 1 O VAL A 220 N CYS A 166 SHEET 5 A 6 LEU A 252 LYS A 256 1 O ILE A 255 N VAL A 221 SHEET 6 A 6 CYS A 274 ASP A 275 1 O CYS A 274 N PRO A 254 LINK C PRO A 279 N CSO A 280 1555 1555 1.33 LINK C CSO A 280 N THR A 281 1555 1555 1.33 SITE 1 AC1 4 LYS A 238 PRO A 279 LYS A 282 HOH A 451 CRYST1 34.876 56.810 66.664 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.028673 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017603 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015001 0.00000