HEADER TRANSFERASE/TRANSFERASE INHIBITOR 17-APR-12 4EP9 TITLE CRYSTAL STRUCTURE OF RAT CARNITINE PALMITOYLTRANSFERASE 2 IN COMPLEX TITLE 2 WITH COA-SITE INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: CARNITINE O-PALMITOYLTRANSFERASE 2, MITOCHONDRIAL; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CARNITINE O-PALMITOYLTRANSFERASE 2, MITOCHONDRIAL; COMPND 5 SYNONYM: CARNITINE PALMITOYLTRANSFERASE II, CPT II; COMPND 6 EC: 2.3.1.21; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: BROWN RAT,RAT,RATS; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: CPT2, CPT-2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS TRANSFERASE, ACYLTRANSFERASE, MITOCHONDRIAL PROTEIN, COA, KEYWDS 2 ACYLCARNITINE, MITOCHONDRIAL INNER MEMBRANE, LIPID TRANSPORT, KEYWDS 3 TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.C.RUFER,R.THOMA,J.BENZ,M.STIHLE,B.GSELL,E.DE ROO,D.W.BANNER, AUTHOR 2 F.MUELLER,O.CHOMIENNE,M.HENNIG REVDAT 5 13-SEP-23 4EP9 1 REMARK SEQADV REVDAT 4 15-NOV-17 4EP9 1 REMARK REVDAT 3 10-JUL-13 4EP9 1 JRNL REVDAT 2 08-MAY-13 4EP9 1 JRNL REVDAT 1 17-APR-13 4EP9 0 JRNL AUTH S.PERSPICACE,A.C.RUFER,R.THOMA,F.MUELLER,M.HENNIG, JRNL AUTH 2 S.CECCARELLI,T.SCHULZ-GASCH,J.SEELIG JRNL TITL ISOTHERMAL TITRATION CALORIMETRY WITH MICELLES: JRNL TITL 2 THERMODYNAMICS OF INHIBITOR BINDING TO CARNITINE JRNL TITL 3 PALMITOYLTRANSFERASE 2 MEMBRANE PROTEIN. JRNL REF FEBS OPEN BIO V. 3 204 2013 JRNL REFN ESSN 2211-5463 JRNL PMID 23772395 JRNL DOI 10.1016/J.FOB.2013.04.003 REMARK 2 REMARK 2 RESOLUTION. 2.03 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.03 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.70 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 44732 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2380 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.03 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.08 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2698 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 82.85 REMARK 3 BIN R VALUE (WORKING SET) : 0.2130 REMARK 3 BIN FREE R VALUE SET COUNT : 157 REMARK 3 BIN FREE R VALUE : 0.3240 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4976 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 50 REMARK 3 SOLVENT ATOMS : 407 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.73 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.36000 REMARK 3 B22 (A**2) : -0.36000 REMARK 3 B33 (A**2) : 0.72000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.180 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.175 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.120 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.311 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.944 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.898 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5154 ; 0.013 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6990 ; 1.333 ; 1.960 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 624 ; 6.033 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 247 ;34.586 ;23.887 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 846 ;14.747 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 31 ;17.044 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 757 ; 0.089 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3966 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2527 ; 0.202 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3548 ; 0.302 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 448 ; 0.145 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 32 ; 0.184 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 18 ; 0.154 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3216 ; 2.488 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5043 ; 3.415 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2217 ; 5.398 ; 4.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1947 ; 7.291 ; 6.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4EP9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-MAY-12. REMARK 100 THE DEPOSITION ID IS D_1000071901. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-DEC-05 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979550 REMARK 200 MONOCHROMATOR : LN2 COOLED FIXED-EXIT SI(111) REMARK 200 MONOCHROMATOR (19.65M, FOCUSING REMARK 200 SAGITTAL-HORIZONTAL) BENDABLE REMARK 200 MIRROR (20.50 M FOCUSING REMARK 200 MERIDIONAL-VERTICAL) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : 2.030 REMARK 200 RESOLUTION RANGE LOW (A) : 19.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.420 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.03 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.15 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2DEB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.39 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: HAMPTON INDEX #76 0.2 M LITHIUM REMARK 280 SULFATE MONOHYDRATE, 0.1 M HEPES PH 7.5, 25 % (W/V) POLYETHYLENE REMARK 280 GLYCOL 3,350 , VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 154.46500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 33.75000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 33.75000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 231.69750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 33.75000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 33.75000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 77.23250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 33.75000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 33.75000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 231.69750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 33.75000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 33.75000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 77.23250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 154.46500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 6 REMARK 465 GLY A 7 REMARK 465 SER A 8 REMARK 465 SER A 9 REMARK 465 HIS A 10 REMARK 465 HIS A 11 REMARK 465 HIS A 12 REMARK 465 HIS A 13 REMARK 465 HIS A 14 REMARK 465 HIS A 15 REMARK 465 SER A 16 REMARK 465 SER A 17 REMARK 465 GLY A 18 REMARK 465 LEU A 19 REMARK 465 VAL A 20 REMARK 465 PRO A 21 REMARK 465 ARG A 22 REMARK 465 GLY A 23 REMARK 465 SER A 24 REMARK 465 HIS A 25 REMARK 465 MET A 26 REMARK 465 ALA A 27 REMARK 465 VAL A 28 REMARK 465 SER A 29 REMARK 465 GLY A 30 REMARK 465 PRO A 31 REMARK 465 LYS A 657 REMARK 465 THR A 658 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 927 O HOH A 1186 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 129 -56.09 71.42 REMARK 500 PHE A 131 -44.82 -131.14 REMARK 500 ASN A 230 -52.67 71.87 REMARK 500 ASP A 334 -177.69 -173.35 REMARK 500 ARG A 498 -103.01 -124.83 REMARK 500 TYR A 628 -159.51 -95.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PLM A 702 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 0RD A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PLM A 702 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2RCU RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF RAT CARNITINE PALMITOYLTRANSFERASE 2 IN REMARK 900 COMPLEX WITH R-3-(HEXADECANOYLAMINO)-4-(TRIMETHYLAZANIUMYL)BUTANOATE REMARK 900 RELATED ID: 2DEB RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF RAT CARNITINE PALMITOYLTRANSFERASE 2 IN SPACE REMARK 900 GROUP C2221 REMARK 900 RELATED ID: 2FYO RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF RAT CARNITINE PALMITOYLTRANSFERASE 2 IN SPACE REMARK 900 GROUP P43212 REMARK 900 RELATED ID: 2FW3 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF RAT CARNITINE PALMITOYLTRANSFERASE 2 IN REMARK 900 COMPLEX WITH ANTIDIABETIC DRUG ST1326 REMARK 900 RELATED ID: 2H4T RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF RAT CARNITINE PALMITOYLTRANSFERASE II REMARK 900 RELATED ID: 4EPH RELATED DB: PDB DBREF 4EP9 A 27 658 UNP P18886 CPT2_RAT 27 658 SEQADV 4EP9 MET A 6 UNP P18886 EXPRESSION TAG SEQADV 4EP9 GLY A 7 UNP P18886 EXPRESSION TAG SEQADV 4EP9 SER A 8 UNP P18886 EXPRESSION TAG SEQADV 4EP9 SER A 9 UNP P18886 EXPRESSION TAG SEQADV 4EP9 HIS A 10 UNP P18886 EXPRESSION TAG SEQADV 4EP9 HIS A 11 UNP P18886 EXPRESSION TAG SEQADV 4EP9 HIS A 12 UNP P18886 EXPRESSION TAG SEQADV 4EP9 HIS A 13 UNP P18886 EXPRESSION TAG SEQADV 4EP9 HIS A 14 UNP P18886 EXPRESSION TAG SEQADV 4EP9 HIS A 15 UNP P18886 EXPRESSION TAG SEQADV 4EP9 SER A 16 UNP P18886 EXPRESSION TAG SEQADV 4EP9 SER A 17 UNP P18886 EXPRESSION TAG SEQADV 4EP9 GLY A 18 UNP P18886 EXPRESSION TAG SEQADV 4EP9 LEU A 19 UNP P18886 EXPRESSION TAG SEQADV 4EP9 VAL A 20 UNP P18886 EXPRESSION TAG SEQADV 4EP9 PRO A 21 UNP P18886 EXPRESSION TAG SEQADV 4EP9 ARG A 22 UNP P18886 EXPRESSION TAG SEQADV 4EP9 GLY A 23 UNP P18886 EXPRESSION TAG SEQADV 4EP9 SER A 24 UNP P18886 EXPRESSION TAG SEQADV 4EP9 HIS A 25 UNP P18886 EXPRESSION TAG SEQADV 4EP9 MET A 26 UNP P18886 EXPRESSION TAG SEQRES 1 A 653 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 653 LEU VAL PRO ARG GLY SER HIS MET ALA VAL SER GLY PRO SEQRES 3 A 653 ASP ASP TYR LEU GLN HIS SER ILE VAL PRO THR MET HIS SEQRES 4 A 653 TYR GLN ASP SER LEU PRO ARG LEU PRO ILE PRO LYS LEU SEQRES 5 A 653 GLU ASP THR MET LYS ARG TYR LEU ASN ALA GLN LYS PRO SEQRES 6 A 653 LEU LEU ASP ASP SER GLN PHE ARG ARG THR GLU ALA LEU SEQRES 7 A 653 CYS LYS ASN PHE GLU THR GLY VAL GLY LYS GLU LEU HIS SEQRES 8 A 653 ALA HIS LEU LEU ALA GLN ASP LYS GLN ASN LYS HIS THR SEQRES 9 A 653 SER TYR ILE SER GLY PRO TRP PHE ASP MET TYR LEU THR SEQRES 10 A 653 ALA ARG ASP SER ILE VAL LEU ASN PHE ASN PRO PHE MET SEQRES 11 A 653 ALA PHE ASN PRO ASP PRO LYS SER GLU TYR ASN ASP GLN SEQRES 12 A 653 LEU THR ARG ALA THR ASN LEU THR VAL SER ALA VAL ARG SEQRES 13 A 653 PHE LEU LYS THR LEU GLN ALA GLY LEU LEU GLU PRO GLU SEQRES 14 A 653 VAL PHE HIS LEU ASN PRO SER LYS SER ASP THR ASP ALA SEQRES 15 A 653 PHE LYS ARG LEU ILE ARG PHE VAL PRO PRO SER LEU SER SEQRES 16 A 653 TRP TYR GLY ALA TYR LEU VAL ASN ALA TYR PRO LEU ASP SEQRES 17 A 653 MET SER GLN TYR PHE ARG LEU PHE ASN SER THR ARG ILE SEQRES 18 A 653 PRO ARG PRO ASN ARG ASP GLU LEU PHE THR ASP THR LYS SEQRES 19 A 653 ALA ARG HIS LEU LEU VAL LEU ARG LYS GLY HIS PHE TYR SEQRES 20 A 653 VAL PHE ASP VAL LEU ASP GLN ASP GLY ASN ILE VAL ASN SEQRES 21 A 653 PRO LEU GLU ILE GLN ALA HIS LEU LYS TYR ILE LEU SER SEQRES 22 A 653 ASP SER SER PRO VAL PRO GLU PHE PRO VAL ALA TYR LEU SEQRES 23 A 653 THR SER GLU ASN ARG ASP VAL TRP ALA GLU LEU ARG GLN SEQRES 24 A 653 LYS LEU ILE PHE ASP GLY ASN GLU GLU THR LEU LYS LYS SEQRES 25 A 653 VAL ASP SER ALA VAL PHE CYS LEU CYS LEU ASP ASP PHE SEQRES 26 A 653 PRO MET LYS ASP LEU ILE HIS LEU SER HIS THR MET LEU SEQRES 27 A 653 HIS GLY ASP GLY THR ASN ARG TRP PHE ASP LYS SER PHE SEQRES 28 A 653 ASN LEU ILE VAL ALA GLU ASP GLY THR ALA ALA VAL HIS SEQRES 29 A 653 PHE GLU HIS SER TRP GLY ASP GLY VAL ALA VAL LEU ARG SEQRES 30 A 653 PHE PHE ASN GLU VAL PHE ARG ASP SER THR GLN THR PRO SEQRES 31 A 653 ALA ILE THR PRO GLN SER GLN PRO ALA ALA THR ASN SER SEQRES 32 A 653 SER ALA SER VAL GLU THR LEU SER PHE ASN LEU SER GLY SEQRES 33 A 653 ALA LEU LYS ALA GLY ILE THR ALA ALA LYS GLU LYS PHE SEQRES 34 A 653 ASP THR THR VAL LYS THR LEU SER ILE ASP SER ILE GLN SEQRES 35 A 653 PHE GLN ARG GLY GLY LYS GLU PHE LEU LYS LYS LYS GLN SEQRES 36 A 653 LEU SER PRO ASP ALA VAL ALA GLN LEU ALA PHE GLN MET SEQRES 37 A 653 ALA PHE LEU ARG GLN TYR GLY GLN THR VAL ALA THR TYR SEQRES 38 A 653 GLU SER CYS SER THR ALA ALA PHE LYS HIS GLY ARG THR SEQRES 39 A 653 GLU THR ILE ARG PRO ALA SER ILE PHE THR LYS ARG CYS SEQRES 40 A 653 SER GLU ALA PHE VAL ARG ASP PRO SER LYS HIS SER VAL SEQRES 41 A 653 GLY GLU LEU GLN HIS MET MET ALA GLU CYS SER LYS TYR SEQRES 42 A 653 HIS GLY GLN LEU THR LYS GLU ALA ALA MET GLY GLN GLY SEQRES 43 A 653 PHE ASP ARG HIS LEU TYR ALA LEU ARG TYR LEU ALA THR SEQRES 44 A 653 ALA ARG GLY LEU ASN LEU PRO GLU LEU TYR LEU ASP PRO SEQRES 45 A 653 ALA TYR GLN GLN MET ASN HIS ASN ILE LEU SER THR SER SEQRES 46 A 653 THR LEU ASN SER PRO ALA VAL SER LEU GLY GLY PHE ALA SEQRES 47 A 653 PRO VAL VAL PRO ASP GLY PHE GLY ILE ALA TYR ALA VAL SEQRES 48 A 653 HIS ASP ASP TRP ILE GLY CYS ASN VAL SER SER TYR SER SEQRES 49 A 653 GLY ARG ASN ALA ARG GLU PHE LEU HIS CYS VAL GLN LYS SEQRES 50 A 653 CYS LEU GLU ASP ILE PHE ASP ALA LEU GLU GLY LYS ALA SEQRES 51 A 653 ILE LYS THR HET 0RD A 701 34 HET PLM A 702 16 HETNAM 0RD 4-[({1-[(5-CHLORO-2-METHOXYPHENYL)SULFONYL]-4-METHYL-2, HETNAM 2 0RD 3-DIHYDRO-1H-INDOL-6-YL}CARBONYL)AMINO]BENZOIC ACID HETNAM PLM PALMITIC ACID FORMUL 2 0RD C24 H21 CL N2 O6 S FORMUL 3 PLM C16 H32 O2 FORMUL 4 HOH *407(H2 O) HELIX 1 1 TYR A 45 LEU A 49 5 5 HELIX 2 2 LYS A 56 LYS A 69 1 14 HELIX 3 3 ASP A 73 GLY A 90 1 18 HELIX 4 4 GLY A 90 GLN A 105 1 16 HELIX 5 5 ILE A 112 ALA A 123 1 12 HELIX 6 6 LYS A 142 ASN A 146 5 5 HELIX 7 7 ASP A 147 ALA A 168 1 22 HELIX 8 8 ASN A 179 ASP A 184 1 6 HELIX 9 9 THR A 185 ARG A 193 1 9 HELIX 10 10 LEU A 199 LEU A 206 1 8 HELIX 11 11 MET A 214 LEU A 220 5 7 HELIX 12 12 ASN A 265 ASP A 279 1 15 HELIX 13 13 PRO A 287 GLU A 294 5 8 HELIX 14 14 ASN A 295 ASP A 309 1 15 HELIX 15 15 ASN A 311 ALA A 321 1 11 HELIX 16 16 ASP A 334 HIS A 344 1 11 HELIX 17 17 ASP A 376 THR A 394 1 19 HELIX 18 18 ASN A 407 VAL A 412 1 6 HELIX 19 19 SER A 420 THR A 440 1 21 HELIX 20 20 GLY A 452 LYS A 459 1 8 HELIX 21 21 SER A 462 GLY A 480 1 19 HELIX 22 22 SER A 506 ARG A 518 1 13 HELIX 23 23 SER A 524 MET A 548 1 25 HELIX 24 24 PHE A 552 ARG A 566 1 15 HELIX 25 25 PRO A 571 LEU A 575 5 5 HELIX 26 26 ASP A 576 ASN A 583 1 8 HELIX 27 27 ASN A 632 GLU A 652 1 21 SHEET 1 A 8 GLU A 413 THR A 414 0 SHEET 2 A 8 HIS A 250 ASP A 255 -1 N VAL A 253 O GLU A 413 SHEET 3 A 8 HIS A 242 ARG A 247 -1 N LEU A 243 O PHE A 254 SHEET 4 A 8 CYS A 324 LEU A 327 1 O LEU A 325 N LEU A 244 SHEET 5 A 8 PHE A 356 VAL A 360 1 O LEU A 358 N CYS A 326 SHEET 6 A 8 ALA A 366 PHE A 370 -1 O HIS A 369 N ASN A 357 SHEET 7 A 8 PHE A 134 PHE A 137 -1 N MET A 135 O VAL A 368 SHEET 8 A 8 VAL A 597 GLY A 601 -1 O LEU A 599 N ALA A 136 SHEET 1 B 2 VAL A 175 HIS A 177 0 SHEET 2 B 2 ALA A 209 PRO A 211 -1 O TYR A 210 N PHE A 176 SHEET 1 C 2 SER A 223 ILE A 226 0 SHEET 2 C 2 GLU A 233 THR A 236 -1 O GLU A 233 N ILE A 226 SHEET 1 D 6 SER A 442 PHE A 448 0 SHEET 2 D 6 ILE A 621 SER A 627 -1 O ILE A 621 N PHE A 448 SHEET 3 D 6 PHE A 610 VAL A 616 -1 N ALA A 613 O ASN A 624 SHEET 4 D 6 LEU A 587 THR A 591 1 N SER A 588 O ILE A 612 SHEET 5 D 6 THR A 485 SER A 490 1 N TYR A 486 O THR A 589 SHEET 6 D 6 THR A 499 ILE A 502 -1 O ILE A 502 N GLU A 487 SITE 1 AC1 15 HIS A 372 ASP A 376 GLY A 377 ASP A 464 SITE 2 AC1 15 GLU A 487 SER A 488 CYS A 489 SER A 490 SITE 3 AC1 15 THR A 543 SER A 590 THR A 591 LEU A 592 SITE 4 AC1 15 ASN A 593 PLM A 702 HOH A1206 SITE 1 AC2 10 GLN A 447 SER A 590 LEU A 592 SER A 598 SITE 2 AC2 10 LEU A 599 GLY A 600 ALA A 613 TYR A 614 SITE 3 AC2 10 GLY A 622 0RD A 701 CRYST1 67.500 67.500 308.930 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014815 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014815 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003237 0.00000