HEADER METAL TRANSPORT 17-APR-12 4EPA TITLE THE CRYSTAL STRUCTURE OF THE FERRIC YERSINIABACTIN UPTAKE RECEPTOR TITLE 2 FYUA FROM YERSINIA PESTIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: PESTICIN RECEPTOR; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: FERRIC YERSINIABACTIN UPTAKE RECEPTOR, FYUA, IRPC; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: YERSINIA PESTIS; SOURCE 3 ORGANISM_TAXID: 632; SOURCE 4 GENE: FYUA, PSN, YPO1906, Y2404, YP_1649; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TONB DEPENDENT TRANSPORTER, IRON IMPORT, METAL TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR P.LUKACIK,T.J.BARNARD,S.K.BUCHANAN REVDAT 2 04-JUL-12 4EPA 1 JRNL REVDAT 1 20-JUN-12 4EPA 0 JRNL AUTH P.LUKACIK,T.J.BARNARD,P.W.KELLER,K.S.CHATURVEDI,N.SEDDIKI, JRNL AUTH 2 J.W.FAIRMAN,N.NOINAJ,T.L.KIRBY,J.P.HENDERSON,A.C.STEVEN, JRNL AUTH 3 B.J.HINNEBUSCH,S.K.BUCHANAN JRNL TITL STRUCTURAL ENGINEERING OF A PHAGE LYSIN THAT TARGETS JRNL TITL 2 GRAM-NEGATIVE PATHOGENS. JRNL REF PROC.NATL.ACAD.SCI.USA V. 109 9857 2012 JRNL REFN ISSN 0027-8424 JRNL PMID 22679291 JRNL DOI 10.1073/PNAS.1203472109 REMARK 2 REMARK 2 RESOLUTION. 3.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 3 NUMBER OF REFLECTIONS : 40958 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.228 REMARK 3 R VALUE (WORKING SET) : 0.227 REMARK 3 FREE R VALUE : 0.244 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2179 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.28 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2444 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 79.91 REMARK 3 BIN R VALUE (WORKING SET) : 0.3670 REMARK 3 BIN FREE R VALUE SET COUNT : 125 REMARK 3 BIN FREE R VALUE : 0.3820 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4852 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 21 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.82 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.22000 REMARK 3 B22 (A**2) : 3.22000 REMARK 3 B33 (A**2) : -6.44000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.356 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.276 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.191 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.453 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.892 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.864 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4988 ; 0.013 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 3328 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6778 ; 1.440 ; 1.944 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8060 ; 0.828 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 632 ; 7.032 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 234 ;36.272 ;23.718 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 766 ;18.481 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 39 ;19.723 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 739 ; 0.079 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5691 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1053 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 931 ; 0.209 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3400 ; 0.197 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2473 ; 0.202 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 3052 ; 0.093 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 86 ; 0.172 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 7 ; 0.160 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 15 ; 0.297 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 3 ; 0.115 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3221 ; 3.105 ; 5.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1298 ; 0.549 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5028 ; 4.187 ; 6.000 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2063 ; 5.577 ; 8.000 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1750 ; 8.199 ;11.000 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4EPA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-APR-12. REMARK 100 THE RCSB ID CODE IS RCSB071902. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JAN-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97912 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 40958 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 12.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.25000 REMARK 200 FOR THE DATA SET : 12.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 83.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.25000 REMARK 200 FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 86.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 9.03 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.4 M AMMONIUM FORMATE, 0.1 M HEPES, REMARK 280 PH 6.8, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 90.58950 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 90.58950 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 159.93050 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 90.58950 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 79.96525 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 90.58950 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 239.89575 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 90.58950 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 239.89575 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 90.58950 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 79.96525 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 90.58950 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 90.58950 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 159.93050 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 90.58950 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 90.58950 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 159.93050 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 90.58950 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 239.89575 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 90.58950 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 79.96525 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 90.58950 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 79.96525 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 90.58950 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 239.89575 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 90.58950 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 90.58950 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 159.93050 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -3 REMARK 465 ALA A -2 REMARK 465 MSE A -1 REMARK 465 GLY A 0 REMARK 465 GLN A 1 REMARK 465 THR A 2 REMARK 465 SER A 3 REMARK 465 GLN A 4 REMARK 465 GLN A 5 REMARK 465 ASP A 6 REMARK 465 GLU A 7 REMARK 465 SER A 8 REMARK 465 THR A 9 REMARK 465 LEU A 10 REMARK 465 VAL A 11 REMARK 465 VAL A 12 REMARK 465 TYR A 487 REMARK 465 SER A 488 REMARK 465 GLY A 489 REMARK 465 PRO A 490 REMARK 465 VAL A 491 REMARK 465 ARG A 492 REMARK 465 MSE A 493 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 77 CG CD OE1 NE2 REMARK 470 GLU A 144 CD OE1 OE2 REMARK 470 ASP A 179 CG OD1 OD2 REMARK 470 LYS A 242 CD CE NZ REMARK 470 LYS A 403 CE NZ REMARK 470 ASP A 421 CG OD1 OD2 REMARK 470 LYS A 449 CG CD CE NZ REMARK 470 GLU A 466 CD OE1 OE2 REMARK 470 ARG A 563 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 605 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 16 13.36 56.54 REMARK 500 MSE A 63 -52.48 0.03 REMARK 500 ALA A 76 -60.52 -105.34 REMARK 500 ASP A 104 66.73 -153.58 REMARK 500 LEU A 167 -60.74 -141.82 REMARK 500 ASN A 202 111.01 -160.77 REMARK 500 GLN A 229 69.13 -176.12 REMARK 500 ASP A 237 60.85 -115.88 REMARK 500 TYR A 253 118.56 -164.79 REMARK 500 ARG A 255 116.13 -160.22 REMARK 500 TYR A 267 117.14 -161.22 REMARK 500 SER A 278 103.46 -160.46 REMARK 500 ASN A 303 77.77 -163.14 REMARK 500 ALA A 338 94.67 -162.79 REMARK 500 SER A 386 100.03 -172.34 REMARK 500 GLN A 388 105.74 -170.04 REMARK 500 SER A 392 105.30 -164.58 REMARK 500 PRO A 397 132.12 -38.05 REMARK 500 THR A 420 -167.58 -108.31 REMARK 500 ASP A 422 38.00 -141.15 REMARK 500 ILE A 457 118.46 -161.66 REMARK 500 ALA A 499 74.87 -159.25 REMARK 500 TYR A 539 23.24 44.74 REMARK 500 SER A 555 119.25 -165.90 REMARK 500 GLN A 589 -68.29 -91.52 REMARK 500 ASN A 615 75.10 49.91 REMARK 500 ASP A 618 42.68 39.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER A 74 SER A 75 -147.26 REMARK 500 GLY A 590 THR A 591 -146.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 LDA A 701 REMARK 610 LDA A 702 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LDA A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LDA A 702 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4EPF RELATED DB: PDB REMARK 900 RELATED ID: 4EPI RELATED DB: PDB DBREF 4EPA A 1 651 UNP P46359 FYUA_YERPE 23 673 SEQADV 4EPA GLY A -3 UNP P46359 EXPRESSION TAG SEQADV 4EPA ALA A -2 UNP P46359 EXPRESSION TAG SEQADV 4EPA MSE A -1 UNP P46359 EXPRESSION TAG SEQADV 4EPA GLY A 0 UNP P46359 EXPRESSION TAG SEQRES 1 A 655 GLY ALA MSE GLY GLN THR SER GLN GLN ASP GLU SER THR SEQRES 2 A 655 LEU VAL VAL THR ALA SER LYS GLN SER SER ARG SER ALA SEQRES 3 A 655 SER ALA ASN ASN VAL SER SER THR VAL VAL SER ALA PRO SEQRES 4 A 655 GLU LEU SER ASP ALA GLY VAL THR ALA SER ASP LYS LEU SEQRES 5 A 655 PRO ARG VAL LEU PRO GLY LEU ASN ILE GLU ASN SER GLY SEQRES 6 A 655 ASN MSE LEU PHE SER THR ILE SER LEU ARG GLY VAL SER SEQRES 7 A 655 SER ALA GLN ASP PHE TYR ASN PRO ALA VAL THR LEU TYR SEQRES 8 A 655 VAL ASP GLY VAL PRO GLN LEU SER THR ASN THR ILE GLN SEQRES 9 A 655 ALA LEU THR ASP VAL GLN SER VAL GLU LEU LEU ARG GLY SEQRES 10 A 655 PRO GLN GLY THR LEU TYR GLY LYS SER ALA GLN GLY GLY SEQRES 11 A 655 ILE ILE ASN ILE VAL THR GLN GLN PRO ASP SER THR PRO SEQRES 12 A 655 ARG GLY TYR ILE GLU GLY GLY VAL SER SER ARG ASP SER SEQRES 13 A 655 TYR ARG SER LYS PHE ASN LEU SER GLY PRO ILE GLN ASP SEQRES 14 A 655 GLY LEU LEU TYR GLY SER VAL THR LEU LEU ARG GLN VAL SEQRES 15 A 655 ASP ASP GLY ASP MSE ILE ASN PRO ALA THR GLY SER ASP SEQRES 16 A 655 ASP LEU GLY GLY THR ARG ALA SER ILE GLY ASN VAL LYS SEQRES 17 A 655 LEU ARG LEU ALA PRO ASP ASP GLN PRO TRP GLU MSE GLY SEQRES 18 A 655 PHE ALA ALA SER ARG GLU CYS THR ARG ALA THR GLN ASP SEQRES 19 A 655 ALA TYR VAL GLY TRP ASN ASP ILE LYS GLY ARG LYS LEU SEQRES 20 A 655 SER ILE SER ASP GLY SER PRO ASP PRO TYR MSE ARG ARG SEQRES 21 A 655 CYS THR ASP SER GLN THR LEU SER GLY LYS TYR THR THR SEQRES 22 A 655 ASP ASP TRP VAL PHE ASN LEU ILE SER ALA TRP GLN GLN SEQRES 23 A 655 GLN HIS TYR SER ARG THR PHE PRO SER GLY SER LEU ILE SEQRES 24 A 655 VAL ASN MSE PRO GLN ARG TRP ASN GLN ASP VAL GLN GLU SEQRES 25 A 655 LEU ARG ALA ALA THR LEU GLY ASP ALA ARG THR VAL ASP SEQRES 26 A 655 MSE VAL PHE GLY LEU TYR ARG GLN ASN THR ARG GLU LYS SEQRES 27 A 655 LEU ASN SER ALA TYR ASP MSE PRO THR MSE PRO TYR LEU SEQRES 28 A 655 SER SER THR GLY TYR THR THR ALA GLU THR LEU ALA ALA SEQRES 29 A 655 TYR SER ASP LEU THR TRP HIS LEU THR ASP ARG PHE ASP SEQRES 30 A 655 ILE GLY GLY GLY VAL ARG PHE SER HIS ASP LYS SER SER SEQRES 31 A 655 THR GLN TYR HIS GLY SER MSE LEU GLY ASN PRO PHE GLY SEQRES 32 A 655 ASP GLN GLY LYS SER ASN ASP ASP GLN VAL LEU GLY GLN SEQRES 33 A 655 LEU SER ALA GLY TYR MSE LEU THR ASP ASP TRP ARG VAL SEQRES 34 A 655 TYR THR ARG VAL ALA GLN GLY TYR LYS PRO SER GLY TYR SEQRES 35 A 655 ASN ILE VAL PRO THR ALA GLY LEU ASP ALA LYS PRO PHE SEQRES 36 A 655 VAL ALA GLU LYS SER ILE ASN TYR GLU LEU GLY THR ARG SEQRES 37 A 655 TYR GLU THR ALA ASP VAL THR LEU GLN ALA ALA THR PHE SEQRES 38 A 655 TYR THR HIS THR LYS ASP MSE GLN LEU TYR SER GLY PRO SEQRES 39 A 655 VAL ARG MSE GLN THR LEU SER ASN ALA GLY LYS ALA ASP SEQRES 40 A 655 ALA THR GLY VAL GLU LEU GLU ALA LYS TRP ARG PHE ALA SEQRES 41 A 655 PRO GLY TRP SER TRP ASP ILE ASN GLY ASN VAL ILE ARG SEQRES 42 A 655 SER GLU PHE THR ASN ASP SER GLU LEU TYR HIS GLY ASN SEQRES 43 A 655 ARG VAL PRO PHE VAL PRO ARG TYR GLY ALA GLY SER SER SEQRES 44 A 655 VAL ASN GLY VAL ILE ASP THR ARG TYR GLY ALA LEU MSE SEQRES 45 A 655 PRO ARG LEU ALA VAL ASN LEU VAL GLY PRO HIS TYR PHE SEQRES 46 A 655 ASP GLY ASP ASN GLN LEU ARG GLN GLY THR TYR ALA THR SEQRES 47 A 655 LEU ASP SER SER LEU GLY TRP GLN ALA THR GLU ARG MSE SEQRES 48 A 655 ASN ILE SER VAL TYR VAL ASP ASN LEU PHE ASP ARG ARG SEQRES 49 A 655 TYR ARG THR TYR GLY TYR MSE ASN GLY SER SER ALA VAL SEQRES 50 A 655 ALA GLN VAL ASN MSE GLY ARG THR VAL GLY ILE ASN THR SEQRES 51 A 655 ARG ILE ASP PHE PHE MODRES 4EPA MSE A 63 MET SELENOMETHIONINE MODRES 4EPA MSE A 183 MET SELENOMETHIONINE MODRES 4EPA MSE A 216 MET SELENOMETHIONINE MODRES 4EPA MSE A 254 MET SELENOMETHIONINE MODRES 4EPA MSE A 298 MET SELENOMETHIONINE MODRES 4EPA MSE A 322 MET SELENOMETHIONINE MODRES 4EPA MSE A 341 MET SELENOMETHIONINE MODRES 4EPA MSE A 344 MET SELENOMETHIONINE MODRES 4EPA MSE A 393 MET SELENOMETHIONINE MODRES 4EPA MSE A 418 MET SELENOMETHIONINE MODRES 4EPA MSE A 484 MET SELENOMETHIONINE MODRES 4EPA MSE A 568 MET SELENOMETHIONINE MODRES 4EPA MSE A 607 MET SELENOMETHIONINE MODRES 4EPA MSE A 627 MET SELENOMETHIONINE MODRES 4EPA MSE A 638 MET SELENOMETHIONINE HET MSE A 63 8 HET MSE A 183 8 HET MSE A 216 8 HET MSE A 254 8 HET MSE A 298 8 HET MSE A 322 8 HET MSE A 341 8 HET MSE A 344 8 HET MSE A 393 8 HET MSE A 418 8 HET MSE A 484 8 HET MSE A 568 8 HET MSE A 607 8 HET MSE A 627 8 HET MSE A 638 8 HET LDA A 701 11 HET LDA A 702 10 HETNAM MSE SELENOMETHIONINE HETNAM LDA LAURYL DIMETHYLAMINE-N-OXIDE FORMUL 1 MSE 15(C5 H11 N O2 SE) FORMUL 2 LDA 2(C14 H31 N O) HELIX 1 1 SER A 21 ASN A 26 1 6 HELIX 2 2 ALA A 34 ALA A 40 1 7 HELIX 3 3 ALA A 44 VAL A 51 5 8 HELIX 4 4 LEU A 94 THR A 98 5 5 SHEET 1 A 5 SER A 29 SER A 33 0 SHEET 2 A 5 VAL A 105 ARG A 112 -1 O LEU A 110 N THR A 30 SHEET 3 A 5 GLY A 126 THR A 132 -1 O ASN A 129 N GLU A 109 SHEET 4 A 5 THR A 85 VAL A 88 1 N TYR A 87 O ILE A 128 SHEET 5 A 5 VAL A 91 PRO A 92 -1 O VAL A 91 N VAL A 88 SHEET 1 B25 TYR A 433 LYS A 434 0 SHEET 2 B25 GLU A 454 GLU A 466 -1 O GLU A 454 N LYS A 434 SHEET 3 B25 VAL A 470 LYS A 482 -1 O LEU A 472 N TYR A 465 SHEET 4 B25 LYS A 501 TRP A 513 -1 O ALA A 504 N THR A 479 SHEET 5 B25 SER A 520 PHE A 532 -1 O GLU A 531 N ASP A 503 SHEET 6 B25 TYR A 550 ASN A 557 -1 O GLY A 553 N ASN A 524 SHEET 7 B25 LEU A 567 VAL A 576 -1 O VAL A 573 N SER A 554 SHEET 8 B25 TYR A 592 TRP A 601 -1 O ASP A 596 N ALA A 572 SHEET 9 B25 MSE A 607 ASP A 614 -1 O VAL A 611 N LEU A 599 SHEET 10 B25 THR A 641 ILE A 648 -1 O ASN A 645 N SER A 610 SHEET 11 B25 ARG A 140 SER A 148 -1 N ILE A 143 O ILE A 648 SHEET 12 B25 SER A 152 GLN A 164 -1 O SER A 152 N SER A 148 SHEET 13 B25 LEU A 168 ASP A 179 -1 O LEU A 168 N ILE A 163 SHEET 14 B25 THR A 196 LEU A 207 -1 O ARG A 206 N TYR A 169 SHEET 15 B25 TRP A 214 ALA A 227 -1 O PHE A 218 N LEU A 205 SHEET 16 B25 LYS A 266 THR A 268 -1 O LYS A 266 N GLU A 215 SHEET 17 B25 VAL A 273 SER A 291 -1 O PHE A 274 N TYR A 267 SHEET 18 B25 GLN A 300 ALA A 312 -1 O GLU A 308 N ILE A 277 SHEET 19 B25 VAL A 320 ASP A 340 -1 O ARG A 328 N GLN A 307 SHEET 20 B25 PRO A 345 HIS A 367 -1 O ALA A 355 N THR A 331 SHEET 21 B25 PHE A 372 MSE A 393 -1 O HIS A 382 N LEU A 358 SHEET 22 B25 ASN A 396 THR A 420 -1 O SER A 414 N GLY A 375 SHEET 23 B25 TRP A 423 ALA A 430 -1 O VAL A 425 N TYR A 417 SHEET 24 B25 GLU A 454 GLU A 466 -1 O GLY A 462 N TYR A 426 SHEET 25 B25 TYR A 433 LYS A 434 -1 N LYS A 434 O GLU A 454 SHEET 1 C25 TYR A 433 LYS A 434 0 SHEET 2 C25 GLU A 454 GLU A 466 -1 O GLU A 454 N LYS A 434 SHEET 3 C25 VAL A 470 LYS A 482 -1 O LEU A 472 N TYR A 465 SHEET 4 C25 LYS A 501 TRP A 513 -1 O ALA A 504 N THR A 479 SHEET 5 C25 SER A 520 PHE A 532 -1 O GLU A 531 N ASP A 503 SHEET 6 C25 TYR A 550 ASN A 557 -1 O GLY A 553 N ASN A 524 SHEET 7 C25 LEU A 567 VAL A 576 -1 O VAL A 573 N SER A 554 SHEET 8 C25 TYR A 592 TRP A 601 -1 O ASP A 596 N ALA A 572 SHEET 9 C25 MSE A 607 ASP A 614 -1 O VAL A 611 N LEU A 599 SHEET 10 C25 THR A 641 ILE A 648 -1 O ASN A 645 N SER A 610 SHEET 11 C25 ARG A 140 SER A 148 -1 N ILE A 143 O ILE A 648 SHEET 12 C25 SER A 152 GLN A 164 -1 O SER A 152 N SER A 148 SHEET 13 C25 LEU A 168 ASP A 179 -1 O LEU A 168 N ILE A 163 SHEET 14 C25 THR A 196 LEU A 207 -1 O ARG A 206 N TYR A 169 SHEET 15 C25 TRP A 214 ALA A 227 -1 O PHE A 218 N LEU A 205 SHEET 16 C25 TYR A 253 LEU A 263 -1 O ARG A 256 N THR A 225 SHEET 17 C25 VAL A 273 SER A 291 -1 O THR A 288 N TYR A 253 SHEET 18 C25 LEU A 294 ASN A 297 -1 O VAL A 296 N PHE A 289 SHEET 19 C25 VAL A 320 ASP A 340 -1 O ASP A 340 N ILE A 295 SHEET 20 C25 PRO A 345 HIS A 367 -1 O ALA A 355 N THR A 331 SHEET 21 C25 PHE A 372 MSE A 393 -1 O HIS A 382 N LEU A 358 SHEET 22 C25 ASN A 396 THR A 420 -1 O SER A 414 N GLY A 375 SHEET 23 C25 TRP A 423 ALA A 430 -1 O VAL A 425 N TYR A 417 SHEET 24 C25 GLU A 454 GLU A 466 -1 O GLY A 462 N TYR A 426 SHEET 25 C25 TYR A 433 LYS A 434 -1 N LYS A 434 O GLU A 454 SHEET 1 D 3 VAL A 233 GLY A 234 0 SHEET 2 D 3 SER A 631 VAL A 636 -1 O ALA A 634 N VAL A 233 SHEET 3 D 3 ARG A 622 ASN A 628 -1 N TYR A 624 O GLN A 635 SHEET 1 E 2 GLN A 485 LEU A 486 0 SHEET 2 E 2 SER A 497 ASN A 498 -1 O SER A 497 N LEU A 486 LINK C ASN A 62 N MSE A 63 1555 1555 1.33 LINK C MSE A 63 N LEU A 64 1555 1555 1.33 LINK C ASP A 182 N MSE A 183 1555 1555 1.33 LINK C MSE A 183 N ILE A 184 1555 1555 1.33 LINK C GLU A 215 N MSE A 216 1555 1555 1.32 LINK C MSE A 216 N GLY A 217 1555 1555 1.32 LINK C TYR A 253 N MSE A 254 1555 1555 1.32 LINK C MSE A 254 N ARG A 255 1555 1555 1.32 LINK C ASN A 297 N MSE A 298 1555 1555 1.33 LINK C MSE A 298 N PRO A 299 1555 1555 1.35 LINK C ASP A 321 N MSE A 322 1555 1555 1.32 LINK C MSE A 322 N VAL A 323 1555 1555 1.34 LINK C ASP A 340 N MSE A 341 1555 1555 1.33 LINK C MSE A 341 N PRO A 342 1555 1555 1.34 LINK C THR A 343 N MSE A 344 1555 1555 1.33 LINK C MSE A 344 N PRO A 345 1555 1555 1.34 LINK C SER A 392 N MSE A 393 1555 1555 1.33 LINK C MSE A 393 N LEU A 394 1555 1555 1.33 LINK C TYR A 417 N MSE A 418 1555 1555 1.33 LINK C MSE A 418 N LEU A 419 1555 1555 1.33 LINK C ASP A 483 N MSE A 484 1555 1555 1.33 LINK C MSE A 484 N GLN A 485 1555 1555 1.32 LINK C LEU A 567 N MSE A 568 1555 1555 1.33 LINK C MSE A 568 N PRO A 569 1555 1555 1.34 LINK C ARG A 606 N MSE A 607 1555 1555 1.32 LINK C MSE A 607 N ASN A 608 1555 1555 1.33 LINK C TYR A 626 N MSE A 627 1555 1555 1.33 LINK C MSE A 627 N ASN A 628 1555 1555 1.32 LINK C ASN A 637 N MSE A 638 1555 1555 1.33 LINK C MSE A 638 N GLY A 639 1555 1555 1.32 CISPEP 1 SER A 75 ALA A 76 0 -20.99 CISPEP 2 LEU A 314 GLY A 315 0 -22.01 CISPEP 3 ASP A 316 ALA A 317 0 -2.70 SITE 1 AC1 3 ILE A 163 ARG A 222 ARG A 255 SITE 1 AC2 2 GLY A 170 SER A 171 CRYST1 181.179 181.179 319.861 90.00 90.00 90.00 I 41 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005519 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005519 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003126 0.00000