HEADER HYDROLASE 17-APR-12 4EPE TITLE FINAL UREASE STRUCTURE FOR RADIATION DAMAGE EXPERIMENT AT 300 K COMPND MOL_ID: 1; COMPND 2 MOLECULE: UREASE SUBUNIT ALPHA; COMPND 3 CHAIN: C; COMPND 4 SYNONYM: UREA AMIDOHYDROLASE SUBUNIT ALPHA; COMPND 5 EC: 3.5.1.5; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: UREASE SUBUNIT BETA; COMPND 9 CHAIN: B; COMPND 10 SYNONYM: UREA AMIDOHYDROLASE SUBUNIT BETA; COMPND 11 EC: 3.5.1.5; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: UREASE SUBUNIT GAMMA; COMPND 15 CHAIN: A; COMPND 16 SYNONYM: UREA AMIDOHYDROLASE SUBUNIT GAMMA; COMPND 17 EC: 3.5.1.5; COMPND 18 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROBACTER AEROGENES; SOURCE 3 ORGANISM_TAXID: 548; SOURCE 4 GENE: UREC; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: ENTEROBACTER AEROGENES; SOURCE 9 ORGANISM_COMMON: AEROBACTER AEROGENES; SOURCE 10 ORGANISM_TAXID: 548; SOURCE 11 GENE: UREB; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 14 MOL_ID: 3; SOURCE 15 ORGANISM_SCIENTIFIC: ENTEROBACTER AEROGENES; SOURCE 16 ORGANISM_TAXID: 548; SOURCE 17 GENE: UREA; SOURCE 18 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 19 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ALPHA-BETA BARREL, NICKEL METALLOENZYME, HYDROLASE, RADIATION DAMAGE EXPDTA X-RAY DIFFRACTION AUTHOR M.WARKENTIN,R.BADEAU,J.B.HOPKINS,R.E.THORNE REVDAT 2 23-JAN-13 4EPE 1 JRNL REVDAT 1 29-AUG-12 4EPE 0 JRNL AUTH M.WARKENTIN,R.BADEAU,J.B.HOPKINS,R.E.THORNE JRNL TITL SPATIAL DISTRIBUTION OF RADIATION DAMAGE TO CRYSTALLINE JRNL TITL 2 PROTEINS AT 25-300 K. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 68 1108 2012 JRNL REFN ISSN 0907-4449 JRNL PMID 22948911 JRNL DOI 10.1107/S0907444912021361 REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.8.0 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.66 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 51659 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.152 REMARK 3 R VALUE (WORKING SET) : 0.151 REMARK 3 FREE R VALUE : 0.185 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.090 REMARK 3 FREE R VALUE TEST SET COUNT : 2631 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.10 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 3785 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.1855 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 3587 REMARK 3 BIN R VALUE (WORKING SET) : 0.1845 REMARK 3 BIN FREE R VALUE : 0.2031 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.23 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 198 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5790 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 330 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.49 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.18 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.952 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 6116 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 8320 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 2073 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 152 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 907 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 6116 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 0 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : 1 ; 0.000 ; HARMONIC REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 823 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 7150 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.10 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 3.54 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 17.22 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4EPE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-APR-12. REMARK 100 THE RCSB ID CODE IS RCSB071906. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-MAR-11 REMARK 200 TEMPERATURE (KELVIN) : 300 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : CHESS REMARK 200 BEAMLINE : F1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : .917 REMARK 200 MONOCHROMATOR : SI REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 270 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51712 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 5.300 REMARK 200 R MERGE (I) : 0.10000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.09 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.30 REMARK 200 R MERGE FOR SHELL (I) : 0.78300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: BUSTER 2.8.0 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.03 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: LITHIUM SULFATE, HEPES, EDTA, PH 7.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 21 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 13555 X+1/2,Y+1/2,Z+1/2 REMARK 290 14555 -X,-Y+1/2,Z REMARK 290 15555 -X+1/2,Y,-Z REMARK 290 16555 X,-Y,-Z+1/2 REMARK 290 17555 Z+1/2,X+1/2,Y+1/2 REMARK 290 18555 Z,-X,-Y+1/2 REMARK 290 19555 -Z,-X+1/2,Y REMARK 290 20555 -Z+1/2,X,-Y REMARK 290 21555 Y+1/2,Z+1/2,X+1/2 REMARK 290 22555 -Y+1/2,Z,-X REMARK 290 23555 Y,-Z,-X+1/2 REMARK 290 24555 -Y,-Z+1/2,X REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 85.34850 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 85.34850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 85.34850 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 85.34850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 85.34850 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 85.34850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 85.34850 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 85.34850 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 85.34850 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 85.34850 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 85.34850 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 85.34850 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 85.34850 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 85.34850 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 85.34850 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 85.34850 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 85.34850 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 85.34850 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 85.34850 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 85.34850 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 85.34850 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 85.34850 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 85.34850 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 85.34850 REMARK 290 SMTRY1 17 0.000000 0.000000 1.000000 85.34850 REMARK 290 SMTRY2 17 1.000000 0.000000 0.000000 85.34850 REMARK 290 SMTRY3 17 0.000000 1.000000 0.000000 85.34850 REMARK 290 SMTRY1 18 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 18 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 18 0.000000 -1.000000 0.000000 85.34850 REMARK 290 SMTRY1 19 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 19 -1.000000 0.000000 0.000000 85.34850 REMARK 290 SMTRY3 19 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 20 0.000000 0.000000 -1.000000 85.34850 REMARK 290 SMTRY2 20 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 20 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 21 0.000000 1.000000 0.000000 85.34850 REMARK 290 SMTRY2 21 0.000000 0.000000 1.000000 85.34850 REMARK 290 SMTRY3 21 1.000000 0.000000 0.000000 85.34850 REMARK 290 SMTRY1 22 0.000000 -1.000000 0.000000 85.34850 REMARK 290 SMTRY2 22 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 22 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 23 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 23 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 23 -1.000000 0.000000 0.000000 85.34850 REMARK 290 SMTRY1 24 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 24 0.000000 0.000000 -1.000000 85.34850 REMARK 290 SMTRY3 24 1.000000 0.000000 0.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: NONAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: NONAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 47860 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 57400 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -309.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 1.000000 85.34850 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 85.34850 REMARK 350 BIOMT3 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 85.34850 REMARK 350 BIOMT2 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT3 3 1.000000 0.000000 0.000000 -85.34850 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA C1024 -134.54 49.62 REMARK 500 LYS C1049 -158.90 -96.76 REMARK 500 MET C1055 -113.38 -101.48 REMARK 500 HIS C1272 61.71 30.01 REMARK 500 HIS C1280 117.66 -33.94 REMARK 500 ASP C1323 126.62 68.56 REMARK 500 ASP C1360 52.34 84.06 REMARK 500 ALA C1363 55.76 -147.01 REMARK 500 MET C1364 53.21 77.32 REMARK 500 THR C1408 -88.18 -122.19 REMARK 500 ASP C1460 119.61 -36.75 REMARK 500 HIS C1527 13.57 57.65 REMARK 500 ASN C1528 53.53 -143.58 REMARK 500 ALA C1561 -110.67 -133.47 REMARK 500 HIS B2041 99.91 -69.78 REMARK 500 ASN B2046 125.29 -38.09 REMARK 500 ALA B2085 -152.67 -126.23 REMARK 500 PHE B2093 -122.34 57.01 REMARK 500 VAL B2097 -69.44 -100.20 REMARK 500 ILE A3077 78.81 -117.58 REMARK 500 ASN A3097 67.64 34.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 ASN C1299 24.4 L L OUTSIDE RANGE REMARK 500 HIS C1312 24.3 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B2229 DISTANCE = 10.84 ANGSTROMS REMARK 525 HOH C1867 DISTANCE = 6.41 ANGSTROMS REMARK 525 HOH C1945 DISTANCE = 11.93 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI C1601 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 KCX C1217 OQ2 REMARK 620 2 HIS C1246 ND1 100.5 REMARK 620 3 HIS C1272 NE2 105.5 95.7 REMARK 620 4 HOH C1702 O 104.7 92.7 146.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI C1602 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C1136 NE2 REMARK 620 2 KCX C1217 OQ1 97.5 REMARK 620 3 ASP C1360 OD1 83.5 174.1 REMARK 620 4 HIS C1134 NE2 112.7 90.0 84.3 REMARK 620 5 HOH C1703 O 85.6 101.6 84.2 157.1 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI C 1601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI C 1602 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4EP8 RELATED DB: PDB REMARK 900 RELATED ID: 4EPB RELATED DB: PDB REMARK 900 RELATED ID: 4EPD RELATED DB: PDB DBREF 4EPE C 1002 1567 UNP P18314 URE1_ENTAE 2 567 DBREF 4EPE B 2001 2101 UNP P18315 URE2_ENTAE 1 101 DBREF 4EPE A 3001 3100 UNP P18316 URE3_ENTAE 1 100 SEQRES 1 C 566 SER ASN ILE SER ARG GLN ALA TYR ALA ASP MET PHE GLY SEQRES 2 C 566 PRO THR VAL GLY ASP LYS VAL ARG LEU ALA ASP THR GLU SEQRES 3 C 566 LEU TRP ILE GLU VAL GLU ASP ASP LEU THR THR TYR GLY SEQRES 4 C 566 GLU GLU VAL LYS PHE GLY GLY GLY LYS VAL ILE ARG ASP SEQRES 5 C 566 GLY MET GLY GLN GLY GLN MET LEU ALA ALA ASP CYS VAL SEQRES 6 C 566 ASP LEU VAL LEU THR ASN ALA LEU ILE VAL ASP HIS TRP SEQRES 7 C 566 GLY ILE VAL LYS ALA ASP ILE GLY VAL LYS ASP GLY ARG SEQRES 8 C 566 ILE PHE ALA ILE GLY LYS ALA GLY ASN PRO ASP ILE GLN SEQRES 9 C 566 PRO ASN VAL THR ILE PRO ILE GLY ALA ALA THR GLU VAL SEQRES 10 C 566 ILE ALA ALA GLU GLY LYS ILE VAL THR ALA GLY GLY ILE SEQRES 11 C 566 ASP THR HIS ILE HIS TRP ILE CYS PRO GLN GLN ALA GLU SEQRES 12 C 566 GLU ALA LEU VAL SER GLY VAL THR THR MET VAL GLY GLY SEQRES 13 C 566 GLY THR GLY PRO ALA ALA GLY THR HIS ALA THR THR CYS SEQRES 14 C 566 THR PRO GLY PRO TRP TYR ILE SER ARG MET LEU GLN ALA SEQRES 15 C 566 ALA ASP SER LEU PRO VAL ASN ILE GLY LEU LEU GLY LYS SEQRES 16 C 566 GLY ASN VAL SER GLN PRO ASP ALA LEU ARG GLU GLN VAL SEQRES 17 C 566 ALA ALA GLY VAL ILE GLY LEU KCX ILE HIS GLU ASP TRP SEQRES 18 C 566 GLY ALA THR PRO ALA ALA ILE ASP CYS ALA LEU THR VAL SEQRES 19 C 566 ALA ASP GLU MET ASP ILE GLN VAL ALA LEU HIS SER ASP SEQRES 20 C 566 THR LEU ASN GLU SER GLY PHE VAL GLU ASP THR LEU ALA SEQRES 21 C 566 ALA ILE GLY GLY ARG THR ILE HIS THR PHE HIS THR GLU SEQRES 22 C 566 GLY ALA GLY GLY GLY HIS ALA PRO ASP ILE ILE THR ALA SEQRES 23 C 566 CYS ALA HIS PRO ASN ILE LEU PRO SER SER THR ASN PRO SEQRES 24 C 566 THR LEU PRO TYR THR LEU ASN THR ILE ASP GLU HIS LEU SEQRES 25 C 566 ASP MET LEU MET VAL CYS HIS HIS LEU ASP PRO ASP ILE SEQRES 26 C 566 ALA GLU ASP VAL ALA PHE ALA GLU SER ARG ILE ARG ARG SEQRES 27 C 566 GLU THR ILE ALA ALA GLU ASP VAL LEU HIS ASP LEU GLY SEQRES 28 C 566 ALA PHE SER LEU THR SER SER ASP SER GLN ALA MET GLY SEQRES 29 C 566 ARG VAL GLY GLU VAL ILE LEU ARG THR TRP GLN VAL ALA SEQRES 30 C 566 HIS ARG MET LYS VAL GLN ARG GLY ALA LEU ALA GLU GLU SEQRES 31 C 566 THR GLY ASP ASN ASP ASN PHE ARG VAL LYS ARG TYR ILE SEQRES 32 C 566 ALA LYS TYR THR ILE ASN PRO ALA LEU THR HIS GLY ILE SEQRES 33 C 566 ALA HIS GLU VAL GLY SER ILE GLU VAL GLY LYS LEU ALA SEQRES 34 C 566 ASP LEU VAL VAL TRP SER PRO ALA PHE PHE GLY VAL LYS SEQRES 35 C 566 PRO ALA THR VAL ILE LYS GLY GLY MET ILE ALA ILE ALA SEQRES 36 C 566 PRO MET GLY ASP ILE ASN ALA SER ILE PRO THR PRO GLN SEQRES 37 C 566 PRO VAL HIS TYR ARG PRO MET PHE GLY ALA LEU GLY SER SEQRES 38 C 566 ALA ARG HIS HIS CYS ARG LEU THR PHE LEU SER GLN ALA SEQRES 39 C 566 ALA ALA ALA ASN GLY VAL ALA GLU ARG LEU ASN LEU ARG SEQRES 40 C 566 SER ALA ILE ALA VAL VAL LYS GLY CYS ARG THR VAL GLN SEQRES 41 C 566 LYS ALA ASP MET VAL HIS ASN SER LEU GLN PRO ASN ILE SEQRES 42 C 566 THR VAL ASP ALA GLN THR TYR GLU VAL ARG VAL ASP GLY SEQRES 43 C 566 GLU LEU ILE THR SER GLU PRO ALA ASP VAL LEU PRO MET SEQRES 44 C 566 ALA GLN ARG TYR PHE LEU PHE SEQRES 1 B 101 MET ILE PRO GLY GLU TYR HIS VAL LYS PRO GLY GLN ILE SEQRES 2 B 101 ALA LEU ASN THR GLY ARG ALA THR CYS ARG VAL VAL VAL SEQRES 3 B 101 GLU ASN HIS GLY ASP ARG PRO ILE GLN VAL GLY SER HIS SEQRES 4 B 101 TYR HIS PHE ALA GLU VAL ASN PRO ALA LEU LYS PHE ASP SEQRES 5 B 101 ARG GLN GLN ALA ALA GLY TYR ARG LEU ASN ILE PRO ALA SEQRES 6 B 101 GLY THR ALA VAL ARG PHE GLU PRO GLY GLN LYS ARG GLU SEQRES 7 B 101 VAL GLU LEU VAL ALA PHE ALA GLY HIS ARG ALA VAL PHE SEQRES 8 B 101 GLY PHE ARG GLY GLU VAL MET GLY PRO LEU SEQRES 1 A 100 MET GLU LEU THR PRO ARG GLU LYS ASP LYS LEU LEU LEU SEQRES 2 A 100 PHE THR ALA ALA LEU VAL ALA GLU ARG ARG LEU ALA ARG SEQRES 3 A 100 GLY LEU LYS LEU ASN TYR PRO GLU SER VAL ALA LEU ILE SEQRES 4 A 100 SER ALA PHE ILE MET GLU GLY ALA ARG ASP GLY LYS SER SEQRES 5 A 100 VAL ALA SER LEU MET GLU GLU GLY ARG HIS VAL LEU THR SEQRES 6 A 100 ARG GLU GLN VAL MET GLU GLY VAL PRO GLU MET ILE PRO SEQRES 7 A 100 ASP ILE GLN VAL GLU ALA THR PHE PRO ASP GLY SER LYS SEQRES 8 A 100 LEU VAL THR VAL HIS ASN PRO ILE ILE MODRES 4EPE KCX C 1217 LYS LYSINE NZ-CARBOXYLIC ACID HET KCX C1217 12 HET NI C1601 1 HET NI C1602 1 HETNAM KCX LYSINE NZ-CARBOXYLIC ACID HETNAM NI NICKEL (II) ION FORMUL 1 KCX C7 H14 N2 O4 FORMUL 4 NI 2(NI 2+) FORMUL 6 HOH *330(H2 O) HELIX 1 1 ARG C 1006 GLY C 1014 1 9 HELIX 2 2 LEU C 1061 CYS C 1065 5 5 HELIX 3 3 GLN C 1141 GLY C 1150 1 10 HELIX 4 4 ALA C 1162 THR C 1168 1 7 HELIX 5 5 PRO C 1172 ASP C 1185 1 14 HELIX 6 6 GLN C 1201 GLY C 1212 1 12 HELIX 7 7 ASP C 1221 GLY C 1223 5 3 HELIX 8 8 THR C 1225 ASP C 1240 1 16 HELIX 9 9 PHE C 1255 GLY C 1264 1 10 HELIX 10 10 ASP C 1283 HIS C 1290 5 8 HELIX 11 11 ASN C 1307 HIS C 1320 1 14 HELIX 12 12 ILE C 1326 ILE C 1337 1 12 HELIX 13 13 ARG C 1338 LEU C 1351 1 14 HELIX 14 14 GLU C 1369 GLY C 1386 1 18 HELIX 15 15 ASP C 1396 LYS C 1406 1 11 HELIX 16 16 THR C 1408 HIS C 1415 1 8 HELIX 17 17 SER C 1436 PHE C 1440 5 5 HELIX 18 18 PHE C 1477 ALA C 1479 5 3 HELIX 19 19 LEU C 1480 ARG C 1488 1 9 HELIX 20 20 SER C 1493 ASN C 1499 1 7 HELIX 21 21 GLY C 1500 ASN C 1506 1 7 HELIX 22 22 GLN C 1521 MET C 1525 5 5 HELIX 23 23 HIS B 2041 VAL B 2045 5 5 HELIX 24 24 THR A 3004 ARG A 3026 1 23 HELIX 25 25 ASN A 3031 GLY A 3050 1 20 HELIX 26 26 SER A 3052 GLY A 3060 1 9 HELIX 27 27 ARG A 3061 VAL A 3063 5 3 HELIX 28 28 THR A 3065 VAL A 3069 5 5 HELIX 29 29 GLY A 3072 ILE A 3077 1 6 SHEET 1 A 2 ASN C1003 SER C1005 0 SHEET 2 A 2 GLN B2012 ALA B2014 -1 O ILE B2013 N ILE C1004 SHEET 1 B 3 TRP C1029 GLU C1031 0 SHEET 2 B 3 LYS C1020 ARG C1022 -1 N VAL C1021 O ILE C1030 SHEET 3 B 3 TYR B2006 HIS B2007 -1 O HIS B2007 N LYS C1020 SHEET 1 C 4 ASP C1034 ASP C1035 0 SHEET 2 C 4 GLY C1080 LYS C1089 1 O LYS C1083 N ASP C1034 SHEET 3 C 4 LEU C1068 ASP C1077 -1 N ILE C1075 O VAL C1082 SHEET 4 C 4 GLU C1117 ALA C1120 1 O ILE C1119 N VAL C1069 SHEET 1 D 8 ARG C1092 GLY C1097 0 SHEET 2 D 8 GLY C1080 LYS C1089 -1 N ASP C1085 O GLY C1097 SHEET 3 D 8 LEU C1068 ASP C1077 -1 N ILE C1075 O VAL C1082 SHEET 4 D 8 ILE C1125 ALA C1128 1 O VAL C1126 N LEU C1074 SHEET 5 D 8 LEU C1432 TRP C1435 -1 O TRP C1435 N ILE C1125 SHEET 6 D 8 THR C1446 LYS C1449 -1 O ILE C1448 N LEU C1432 SHEET 7 D 8 MET C1452 MET C1458 -1 O MET C1452 N LYS C1449 SHEET 8 D 8 HIS C1472 PRO C1475 -1 O HIS C1472 N MET C1458 SHEET 1 E 2 ALA C1099 GLY C1100 0 SHEET 2 E 2 ILE C1110 PRO C1111 1 O ILE C1110 N GLY C1100 SHEET 1 F 8 GLY C1130 HIS C1136 0 SHEET 2 F 8 VAL C1151 GLY C1157 1 O VAL C1155 N ASP C1132 SHEET 3 F 8 ASN C1190 LYS C1196 1 O ASN C1190 N THR C1152 SHEET 4 F 8 GLY C1215 HIS C1219 1 O GLY C1215 N GLY C1195 SHEET 5 F 8 GLN C1242 HIS C1246 1 O ALA C1244 N ILE C1218 SHEET 6 F 8 ILE C1268 THR C1270 1 O HIS C1269 N VAL C1243 SHEET 7 F 8 ILE C1293 THR C1298 1 O LEU C1294 N ILE C1268 SHEET 8 F 8 LEU C1356 SER C1358 1 O LEU C1356 N SER C1297 SHEET 1 G 2 LEU C1489 LEU C1492 0 SHEET 2 G 2 ALA C1510 VAL C1513 1 O ALA C1512 N LEU C1492 SHEET 1 H 3 ILE C1534 VAL C1536 0 SHEET 2 H 3 VAL C1543 VAL C1545 -1 O ARG C1544 N THR C1535 SHEET 3 H 3 GLU C1548 LEU C1549 -1 O GLU C1548 N VAL C1545 SHEET 1 I 4 LEU B2049 LYS B2050 0 SHEET 2 I 4 THR B2021 ASN B2028 -1 N GLU B2027 O LYS B2050 SHEET 3 I 4 LYS B2076 ALA B2083 -1 O ARG B2077 N VAL B2026 SHEET 4 I 4 TYR B2059 LEU B2061 -1 N ARG B2060 O VAL B2082 SHEET 1 J 2 ILE B2034 GLY B2037 0 SHEET 2 J 2 ALA B2068 PHE B2071 -1 O PHE B2071 N ILE B2034 SHEET 1 K 2 ALA B2089 VAL B2090 0 SHEET 2 K 2 GLY B2099 PRO B2100 -1 O GLY B2099 N VAL B2090 SHEET 1 L 2 ASP A3079 PHE A3086 0 SHEET 2 L 2 GLY A3089 HIS A3096 -1 O VAL A3093 N VAL A3082 LINK C LEU C1216 N KCX C1217 1555 1555 1.32 LINK C KCX C1217 N ILE C1218 1555 1555 1.34 LINK OQ2 KCX C1217 NI NI C1601 1555 1555 2.04 LINK NE2 HIS C1136 NI NI C1602 1555 1555 2.04 LINK OQ1 KCX C1217 NI NI C1602 1555 1555 2.06 LINK OD1 ASP C1360 NI NI C1602 1555 1555 2.06 LINK ND1 HIS C1246 NI NI C1601 1555 1555 2.08 LINK NE2 HIS C1272 NI NI C1601 1555 1555 2.18 LINK NE2 HIS C1134 NI NI C1602 1555 1555 2.25 LINK NI NI C1602 O HOH C1703 1555 1555 2.14 LINK NI NI C1601 O HOH C1702 1555 1555 2.19 CISPEP 1 ALA C 1281 PRO C 1282 0 5.16 CISPEP 2 LEU C 1302 PRO C 1303 0 -18.35 CISPEP 3 GLN C 1469 PRO C 1470 0 1.36 SITE 1 AC1 7 KCX C1217 HIS C1219 HIS C1246 HIS C1272 SITE 2 AC1 7 GLY C1277 NI C1602 HOH C1702 SITE 1 AC2 6 HIS C1134 HIS C1136 KCX C1217 ASP C1360 SITE 2 AC2 6 NI C1601 HOH C1703 CRYST1 170.697 170.697 170.697 90.00 90.00 90.00 I 21 3 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005858 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005858 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005858 0.00000