data_4EPY # _entry.id 4EPY # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4EPY pdb_00004epy 10.2210/pdb4epy/pdb RCSB RCSB071926 ? ? WWPDB D_1000071926 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 4EPR . unspecified PDB 4EPT . unspecified PDB 4EPV . unspecified PDB 4EPW . unspecified PDB 4EPX . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4EPY _pdbx_database_status.recvd_initial_deposition_date 2012-04-17 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Sun, Q.' 1 'Burke, J.P.' 2 'Phan, J.' 3 'Burns, M.C.' 4 'Olejniczak, E.T.' 5 'Waterson, A.G.' 6 'Lee, T.' 7 'Rossanese, O.W.' 8 'Fesik, S.W.' 9 # _citation.id primary _citation.title 'Discovery of Small Molecules that Bind to K-Ras and Inhibit Sos-Mediated Activation.' _citation.journal_abbrev Angew.Chem.Int.Ed.Engl. _citation.journal_volume 51 _citation.page_first 6140 _citation.page_last 6143 _citation.year 2012 _citation.journal_id_ASTM ? _citation.country GE _citation.journal_id_ISSN 1433-7851 _citation.journal_id_CSD 9999 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 22566140 _citation.pdbx_database_id_DOI 10.1002/anie.201201358 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Sun, Q.' 1 ? primary 'Burke, J.P.' 2 ? primary 'Phan, J.' 3 ? primary 'Burns, M.C.' 4 ? primary 'Olejniczak, E.T.' 5 ? primary 'Waterson, A.G.' 6 ? primary 'Lee, T.' 7 ? primary 'Rossanese, O.W.' 8 ? primary 'Fesik, S.W.' 9 ? # _cell.entry_id 4EPY _cell.length_a 38.982 _cell.length_b 41.481 _cell.length_c 91.663 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4EPY _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'GTPase KRas' 19354.824 1 3.6.5.2 'G12V, C118S' ? ? 2 non-polymer syn "GUANOSINE-5'-DIPHOSPHATE" 443.201 1 ? ? ? ? 3 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 4 non-polymer syn 'N-[2-(1H-indol-3-ylmethyl)-1H-benzimidazol-5-yl]-L-prolinamide' 359.424 1 ? ? ? ? 5 water nat water 18.015 282 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'K-Ras 2, Ki-Ras, c-K-ras, c-Ki-ras, GTPase KRas, N-terminally processed' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GMTEYKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL CVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTL VREIRKHKEK ; _entity_poly.pdbx_seq_one_letter_code_can ;GMTEYKLVVVGAVGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFL CVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTL VREIRKHKEK ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 MET n 1 3 THR n 1 4 GLU n 1 5 TYR n 1 6 LYS n 1 7 LEU n 1 8 VAL n 1 9 VAL n 1 10 VAL n 1 11 GLY n 1 12 ALA n 1 13 VAL n 1 14 GLY n 1 15 VAL n 1 16 GLY n 1 17 LYS n 1 18 SER n 1 19 ALA n 1 20 LEU n 1 21 THR n 1 22 ILE n 1 23 GLN n 1 24 LEU n 1 25 ILE n 1 26 GLN n 1 27 ASN n 1 28 HIS n 1 29 PHE n 1 30 VAL n 1 31 ASP n 1 32 GLU n 1 33 TYR n 1 34 ASP n 1 35 PRO n 1 36 THR n 1 37 ILE n 1 38 GLU n 1 39 ASP n 1 40 SER n 1 41 TYR n 1 42 ARG n 1 43 LYS n 1 44 GLN n 1 45 VAL n 1 46 VAL n 1 47 ILE n 1 48 ASP n 1 49 GLY n 1 50 GLU n 1 51 THR n 1 52 CYS n 1 53 LEU n 1 54 LEU n 1 55 ASP n 1 56 ILE n 1 57 LEU n 1 58 ASP n 1 59 THR n 1 60 ALA n 1 61 GLY n 1 62 GLN n 1 63 GLU n 1 64 GLU n 1 65 TYR n 1 66 SER n 1 67 ALA n 1 68 MET n 1 69 ARG n 1 70 ASP n 1 71 GLN n 1 72 TYR n 1 73 MET n 1 74 ARG n 1 75 THR n 1 76 GLY n 1 77 GLU n 1 78 GLY n 1 79 PHE n 1 80 LEU n 1 81 CYS n 1 82 VAL n 1 83 PHE n 1 84 ALA n 1 85 ILE n 1 86 ASN n 1 87 ASN n 1 88 THR n 1 89 LYS n 1 90 SER n 1 91 PHE n 1 92 GLU n 1 93 ASP n 1 94 ILE n 1 95 HIS n 1 96 HIS n 1 97 TYR n 1 98 ARG n 1 99 GLU n 1 100 GLN n 1 101 ILE n 1 102 LYS n 1 103 ARG n 1 104 VAL n 1 105 LYS n 1 106 ASP n 1 107 SER n 1 108 GLU n 1 109 ASP n 1 110 VAL n 1 111 PRO n 1 112 MET n 1 113 VAL n 1 114 LEU n 1 115 VAL n 1 116 GLY n 1 117 ASN n 1 118 LYS n 1 119 SER n 1 120 ASP n 1 121 LEU n 1 122 PRO n 1 123 SER n 1 124 ARG n 1 125 THR n 1 126 VAL n 1 127 ASP n 1 128 THR n 1 129 LYS n 1 130 GLN n 1 131 ALA n 1 132 GLN n 1 133 ASP n 1 134 LEU n 1 135 ALA n 1 136 ARG n 1 137 SER n 1 138 TYR n 1 139 GLY n 1 140 ILE n 1 141 PRO n 1 142 PHE n 1 143 ILE n 1 144 GLU n 1 145 THR n 1 146 SER n 1 147 ALA n 1 148 LYS n 1 149 THR n 1 150 ARG n 1 151 GLN n 1 152 GLY n 1 153 VAL n 1 154 ASP n 1 155 ASP n 1 156 ALA n 1 157 PHE n 1 158 TYR n 1 159 THR n 1 160 LEU n 1 161 VAL n 1 162 ARG n 1 163 GLU n 1 164 ILE n 1 165 ARG n 1 166 LYS n 1 167 HIS n 1 168 LYS n 1 169 GLU n 1 170 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'KRAS, KRAS2, RASK2' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code RASK_HUMAN _struct_ref.pdbx_db_accession P01116 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC VFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLV REIRKHKEK ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4EPY _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 2 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 170 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P01116 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 169 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 169 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4EPY GLY A 1 ? UNP P01116 ? ? 'expression tag' 0 1 1 4EPY VAL A 13 ? UNP P01116 GLY 12 'engineered mutation' 12 2 1 4EPY SER A 119 ? UNP P01116 CYS 118 'engineered mutation' 118 3 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 0QY non-polymer . 'N-[2-(1H-indol-3-ylmethyl)-1H-benzimidazol-5-yl]-L-prolinamide' ? 'C21 H21 N5 O' 359.424 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GDP 'RNA linking' n "GUANOSINE-5'-DIPHOSPHATE" ? 'C10 H15 N5 O11 P2' 443.201 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4EPY _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.91 _exptl_crystal.density_percent_sol 35.75 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 4 _exptl_crystal_grow.pdbx_details '28% PEG4000, 0.1 M MMT, 0.2 M ammonium chloride, VAPOR DIFFUSION, SITTING DROP, temperature 291K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'Bruker Platinum 135' _diffrn_detector.pdbx_collection_date 2011-11-05 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Montel confocal, multi-layer mirrors' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'BRUKER AXS MICROSTAR' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.5418 # _reflns.entry_id 4EPY _reflns.observed_criterion_sigma_I -3 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 27.13 _reflns.d_resolution_high 1.8 _reflns.number_obs 13808 _reflns.number_all 14390 _reflns.percent_possible_obs 96 _reflns.pdbx_Rmerge_I_obs 0.087 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 13.8 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.8 _reflns_shell.d_res_low 1.83 _reflns_shell.percent_possible_all 39.8 _reflns_shell.Rmerge_I_obs 0.098 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 7.0 _reflns_shell.pdbx_redundancy 1.3 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 4EPY _refine.ls_number_reflns_obs 13753 _refine.ls_number_reflns_all 14390 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.34 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 27.13 _refine.ls_d_res_high 1.801 _refine.ls_percent_reflns_obs 95.96 _refine.ls_R_factor_obs 0.1625 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1606 _refine.ls_R_factor_R_free 0.1991 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.02 _refine.ls_number_reflns_R_free 690 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] -3.1960 _refine.aniso_B[2][2] 2.5412 _refine.aniso_B[3][3] 0.6548 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol 0.327 _refine.solvent_model_param_bsol 29.295 _refine.pdbx_solvent_vdw_probe_radii 1.10 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.86 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model 4EPV _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.38 _refine.pdbx_overall_phase_error 17.13 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1358 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 56 _refine_hist.number_atoms_solvent 282 _refine_hist.number_atoms_total 1696 _refine_hist.d_res_high 1.801 _refine_hist.d_res_low 27.13 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id f_bond_d 0.004 ? ? 1440 ? 'X-RAY DIFFRACTION' f_angle_d 0.829 ? ? 1951 ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 15.672 ? ? 540 ? 'X-RAY DIFFRACTION' f_chiral_restr 0.053 ? ? 214 ? 'X-RAY DIFFRACTION' f_plane_restr 0.003 ? ? 247 ? 'X-RAY DIFFRACTION' # loop_ _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id . 1.8014 1.9404 2113 0.1976 80.00 0.2559 . . 121 . . . . 'X-RAY DIFFRACTION' . 1.9404 2.1356 2665 0.1613 100.00 0.2117 . . 141 . . . . 'X-RAY DIFFRACTION' . 2.1356 2.4445 2709 0.1624 100.00 0.2199 . . 134 . . . . 'X-RAY DIFFRACTION' . 2.4445 3.0791 2705 0.1607 100.00 0.1997 . . 151 . . . . 'X-RAY DIFFRACTION' . 3.0791 27.1368 2871 0.1513 100.00 0.1685 . . 143 . . . . 'X-RAY DIFFRACTION' # _struct.entry_id 4EPY _struct.title 'Discovery of Small Molecules that Bind to K-Ras and Inhibit Sos-mediated Activation' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4EPY _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text ;Small molecule complex crystal structure, KRas, p21, GTP-binding protein, oncogenes, binder, HYDROLASE, Inhibitor of Sos-mediated activation ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 16 ? ASN A 27 ? GLY A 15 ASN A 26 1 ? 12 HELX_P HELX_P2 2 TYR A 65 ? GLY A 76 ? TYR A 64 GLY A 75 1 ? 12 HELX_P HELX_P3 3 ASN A 87 ? ASP A 106 ? ASN A 86 ASP A 105 1 ? 20 HELX_P HELX_P4 4 ASP A 127 ? GLY A 139 ? ASP A 126 GLY A 138 1 ? 13 HELX_P HELX_P5 5 GLY A 152 ? GLU A 169 ? GLY A 151 GLU A 168 1 ? 18 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A SER 18 OG ? ? ? 1_555 C MG . MG ? ? A SER 17 A MG 202 1_555 ? ? ? ? ? ? ? 2.540 ? ? metalc2 metalc ? ? B GDP . O1B ? ? ? 1_555 C MG . MG ? ? A GDP 201 A MG 202 1_555 ? ? ? ? ? ? ? 2.508 ? ? metalc3 metalc ? ? C MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 202 A HOH 304 1_555 ? ? ? ? ? ? ? 2.129 ? ? metalc4 metalc ? ? C MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 202 A HOH 305 1_555 ? ? ? ? ? ? ? 2.268 ? ? metalc5 metalc ? ? C MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 202 A HOH 314 1_555 ? ? ? ? ? ? ? 2.262 ? ? metalc6 metalc ? ? C MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 202 A HOH 450 1_555 ? ? ? ? ? ? ? 2.115 ? ? # _struct_conn_type.id metalc _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 6 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? parallel A 3 4 ? parallel A 4 5 ? parallel A 5 6 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ASP A 39 ? ILE A 47 ? ASP A 38 ILE A 46 A 2 GLU A 50 ? ASP A 58 ? GLU A 49 ASP A 57 A 3 GLU A 4 ? VAL A 10 ? GLU A 3 VAL A 9 A 4 GLY A 78 ? ALA A 84 ? GLY A 77 ALA A 83 A 5 MET A 112 ? ASN A 117 ? MET A 111 ASN A 116 A 6 PHE A 142 ? GLU A 144 ? PHE A 141 GLU A 143 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N TYR A 41 ? N TYR A 40 O ILE A 56 ? O ILE A 55 A 2 3 O LEU A 57 ? O LEU A 56 N LEU A 7 ? N LEU A 6 A 3 4 N VAL A 10 ? N VAL A 9 O LEU A 80 ? O LEU A 79 A 4 5 N PHE A 83 ? N PHE A 82 O ASN A 117 ? O ASN A 116 A 5 6 N LEU A 114 ? N LEU A 113 O ILE A 143 ? O ILE A 142 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A GDP 201 ? 23 'BINDING SITE FOR RESIDUE GDP A 201' AC2 Software A MG 202 ? 6 'BINDING SITE FOR RESIDUE MG A 202' AC3 Software A 0QY 203 ? 13 'BINDING SITE FOR RESIDUE 0QY A 203' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 23 GLY A 14 ? GLY A 13 . ? 1_555 ? 2 AC1 23 VAL A 15 ? VAL A 14 . ? 1_555 ? 3 AC1 23 GLY A 16 ? GLY A 15 . ? 1_555 ? 4 AC1 23 LYS A 17 ? LYS A 16 . ? 1_555 ? 5 AC1 23 SER A 18 ? SER A 17 . ? 1_555 ? 6 AC1 23 ALA A 19 ? ALA A 18 . ? 1_555 ? 7 AC1 23 PHE A 29 ? PHE A 28 . ? 1_555 ? 8 AC1 23 ASP A 31 ? ASP A 30 . ? 1_555 ? 9 AC1 23 TYR A 33 ? TYR A 32 . ? 1_555 ? 10 AC1 23 ASN A 117 ? ASN A 116 . ? 1_555 ? 11 AC1 23 LYS A 118 ? LYS A 117 . ? 1_555 ? 12 AC1 23 ASP A 120 ? ASP A 119 . ? 1_555 ? 13 AC1 23 LEU A 121 ? LEU A 120 . ? 1_555 ? 14 AC1 23 SER A 146 ? SER A 145 . ? 1_555 ? 15 AC1 23 ALA A 147 ? ALA A 146 . ? 1_555 ? 16 AC1 23 LYS A 148 ? LYS A 147 . ? 1_555 ? 17 AC1 23 MG C . ? MG A 202 . ? 1_555 ? 18 AC1 23 HOH E . ? HOH A 310 . ? 1_555 ? 19 AC1 23 HOH E . ? HOH A 314 . ? 1_555 ? 20 AC1 23 HOH E . ? HOH A 427 . ? 1_555 ? 21 AC1 23 HOH E . ? HOH A 450 . ? 1_555 ? 22 AC1 23 HOH E . ? HOH A 514 . ? 1_555 ? 23 AC1 23 HOH E . ? HOH A 516 . ? 1_555 ? 24 AC2 6 SER A 18 ? SER A 17 . ? 1_555 ? 25 AC2 6 GDP B . ? GDP A 201 . ? 1_555 ? 26 AC2 6 HOH E . ? HOH A 304 . ? 1_555 ? 27 AC2 6 HOH E . ? HOH A 305 . ? 1_555 ? 28 AC2 6 HOH E . ? HOH A 314 . ? 1_555 ? 29 AC2 6 HOH E . ? HOH A 450 . ? 1_555 ? 30 AC3 13 LEU A 7 ? LEU A 6 . ? 1_555 ? 31 AC3 13 VAL A 8 ? VAL A 7 . ? 1_555 ? 32 AC3 13 GLU A 38 ? GLU A 37 . ? 1_555 ? 33 AC3 13 ASP A 39 ? ASP A 38 . ? 1_555 ? 34 AC3 13 SER A 40 ? SER A 39 . ? 1_555 ? 35 AC3 13 ASP A 55 ? ASP A 54 . ? 1_555 ? 36 AC3 13 TYR A 72 ? TYR A 71 . ? 1_555 ? 37 AC3 13 THR A 75 ? THR A 74 . ? 1_555 ? 38 AC3 13 HOH E . ? HOH A 331 . ? 1_555 ? 39 AC3 13 HOH E . ? HOH A 333 . ? 1_555 ? 40 AC3 13 HOH E . ? HOH A 408 . ? 1_555 ? 41 AC3 13 HOH E . ? HOH A 509 . ? 1_555 ? 42 AC3 13 HOH E . ? HOH A 521 . ? 1_555 ? # _database_PDB_matrix.entry_id 4EPY _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4EPY _atom_sites.fract_transf_matrix[1][1] 0.025653 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.024107 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010910 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 0 0 GLY GLY A . n A 1 2 MET 2 1 1 MET MET A . n A 1 3 THR 3 2 2 THR THR A . n A 1 4 GLU 4 3 3 GLU GLU A . n A 1 5 TYR 5 4 4 TYR TYR A . n A 1 6 LYS 6 5 5 LYS LYS A . n A 1 7 LEU 7 6 6 LEU LEU A . n A 1 8 VAL 8 7 7 VAL VAL A . n A 1 9 VAL 9 8 8 VAL VAL A . n A 1 10 VAL 10 9 9 VAL VAL A . n A 1 11 GLY 11 10 10 GLY GLY A . n A 1 12 ALA 12 11 11 ALA ALA A . n A 1 13 VAL 13 12 12 VAL VAL A . n A 1 14 GLY 14 13 13 GLY GLY A . n A 1 15 VAL 15 14 14 VAL VAL A . n A 1 16 GLY 16 15 15 GLY GLY A . n A 1 17 LYS 17 16 16 LYS LYS A . n A 1 18 SER 18 17 17 SER SER A . n A 1 19 ALA 19 18 18 ALA ALA A . n A 1 20 LEU 20 19 19 LEU LEU A . n A 1 21 THR 21 20 20 THR THR A . n A 1 22 ILE 22 21 21 ILE ILE A . n A 1 23 GLN 23 22 22 GLN GLN A . n A 1 24 LEU 24 23 23 LEU LEU A . n A 1 25 ILE 25 24 24 ILE ILE A . n A 1 26 GLN 26 25 25 GLN GLN A . n A 1 27 ASN 27 26 26 ASN ASN A . n A 1 28 HIS 28 27 27 HIS HIS A . n A 1 29 PHE 29 28 28 PHE PHE A . n A 1 30 VAL 30 29 29 VAL VAL A . n A 1 31 ASP 31 30 30 ASP ASP A . n A 1 32 GLU 32 31 31 GLU GLU A . n A 1 33 TYR 33 32 32 TYR TYR A . n A 1 34 ASP 34 33 33 ASP ASP A . n A 1 35 PRO 35 34 34 PRO PRO A . n A 1 36 THR 36 35 35 THR THR A . n A 1 37 ILE 37 36 36 ILE ILE A . n A 1 38 GLU 38 37 37 GLU GLU A . n A 1 39 ASP 39 38 38 ASP ASP A . n A 1 40 SER 40 39 39 SER SER A . n A 1 41 TYR 41 40 40 TYR TYR A . n A 1 42 ARG 42 41 41 ARG ARG A . n A 1 43 LYS 43 42 42 LYS LYS A . n A 1 44 GLN 44 43 43 GLN GLN A . n A 1 45 VAL 45 44 44 VAL VAL A . n A 1 46 VAL 46 45 45 VAL VAL A . n A 1 47 ILE 47 46 46 ILE ILE A . n A 1 48 ASP 48 47 47 ASP ASP A . n A 1 49 GLY 49 48 48 GLY GLY A . n A 1 50 GLU 50 49 49 GLU GLU A . n A 1 51 THR 51 50 50 THR THR A . n A 1 52 CYS 52 51 51 CYS CYS A . n A 1 53 LEU 53 52 52 LEU LEU A . n A 1 54 LEU 54 53 53 LEU LEU A . n A 1 55 ASP 55 54 54 ASP ASP A . n A 1 56 ILE 56 55 55 ILE ILE A . n A 1 57 LEU 57 56 56 LEU LEU A . n A 1 58 ASP 58 57 57 ASP ASP A . n A 1 59 THR 59 58 58 THR THR A . n A 1 60 ALA 60 59 59 ALA ALA A . n A 1 61 GLY 61 60 60 GLY GLY A . n A 1 62 GLN 62 61 61 GLN GLN A . n A 1 63 GLU 63 62 62 GLU GLU A . n A 1 64 GLU 64 63 63 GLU GLU A . n A 1 65 TYR 65 64 64 TYR TYR A . n A 1 66 SER 66 65 65 SER SER A . n A 1 67 ALA 67 66 66 ALA ALA A . n A 1 68 MET 68 67 67 MET MET A . n A 1 69 ARG 69 68 68 ARG ARG A . n A 1 70 ASP 70 69 69 ASP ASP A . n A 1 71 GLN 71 70 70 GLN GLN A . n A 1 72 TYR 72 71 71 TYR TYR A . n A 1 73 MET 73 72 72 MET MET A . n A 1 74 ARG 74 73 73 ARG ARG A . n A 1 75 THR 75 74 74 THR THR A . n A 1 76 GLY 76 75 75 GLY GLY A . n A 1 77 GLU 77 76 76 GLU GLU A . n A 1 78 GLY 78 77 77 GLY GLY A . n A 1 79 PHE 79 78 78 PHE PHE A . n A 1 80 LEU 80 79 79 LEU LEU A . n A 1 81 CYS 81 80 80 CYS CYS A . n A 1 82 VAL 82 81 81 VAL VAL A . n A 1 83 PHE 83 82 82 PHE PHE A . n A 1 84 ALA 84 83 83 ALA ALA A . n A 1 85 ILE 85 84 84 ILE ILE A . n A 1 86 ASN 86 85 85 ASN ASN A . n A 1 87 ASN 87 86 86 ASN ASN A . n A 1 88 THR 88 87 87 THR THR A . n A 1 89 LYS 89 88 88 LYS LYS A . n A 1 90 SER 90 89 89 SER SER A . n A 1 91 PHE 91 90 90 PHE PHE A . n A 1 92 GLU 92 91 91 GLU GLU A . n A 1 93 ASP 93 92 92 ASP ASP A . n A 1 94 ILE 94 93 93 ILE ILE A . n A 1 95 HIS 95 94 94 HIS HIS A . n A 1 96 HIS 96 95 95 HIS HIS A . n A 1 97 TYR 97 96 96 TYR TYR A . n A 1 98 ARG 98 97 97 ARG ARG A . n A 1 99 GLU 99 98 98 GLU GLU A . n A 1 100 GLN 100 99 99 GLN GLN A . n A 1 101 ILE 101 100 100 ILE ILE A . n A 1 102 LYS 102 101 101 LYS LYS A . n A 1 103 ARG 103 102 102 ARG ARG A . n A 1 104 VAL 104 103 103 VAL VAL A . n A 1 105 LYS 105 104 104 LYS LYS A . n A 1 106 ASP 106 105 105 ASP ASP A . n A 1 107 SER 107 106 106 SER SER A . n A 1 108 GLU 108 107 107 GLU GLU A . n A 1 109 ASP 109 108 108 ASP ASP A . n A 1 110 VAL 110 109 109 VAL VAL A . n A 1 111 PRO 111 110 110 PRO PRO A . n A 1 112 MET 112 111 111 MET MET A . n A 1 113 VAL 113 112 112 VAL VAL A . n A 1 114 LEU 114 113 113 LEU LEU A . n A 1 115 VAL 115 114 114 VAL VAL A . n A 1 116 GLY 116 115 115 GLY GLY A . n A 1 117 ASN 117 116 116 ASN ASN A . n A 1 118 LYS 118 117 117 LYS LYS A . n A 1 119 SER 119 118 118 SER SER A . n A 1 120 ASP 120 119 119 ASP ASP A . n A 1 121 LEU 121 120 120 LEU LEU A . n A 1 122 PRO 122 121 121 PRO PRO A . n A 1 123 SER 123 122 122 SER SER A . n A 1 124 ARG 124 123 123 ARG ARG A . n A 1 125 THR 125 124 124 THR THR A . n A 1 126 VAL 126 125 125 VAL VAL A . n A 1 127 ASP 127 126 126 ASP ASP A . n A 1 128 THR 128 127 127 THR THR A . n A 1 129 LYS 129 128 128 LYS LYS A . n A 1 130 GLN 130 129 129 GLN GLN A . n A 1 131 ALA 131 130 130 ALA ALA A . n A 1 132 GLN 132 131 131 GLN GLN A . n A 1 133 ASP 133 132 132 ASP ASP A . n A 1 134 LEU 134 133 133 LEU LEU A . n A 1 135 ALA 135 134 134 ALA ALA A . n A 1 136 ARG 136 135 135 ARG ARG A . n A 1 137 SER 137 136 136 SER SER A . n A 1 138 TYR 138 137 137 TYR TYR A . n A 1 139 GLY 139 138 138 GLY GLY A . n A 1 140 ILE 140 139 139 ILE ILE A . n A 1 141 PRO 141 140 140 PRO PRO A . n A 1 142 PHE 142 141 141 PHE PHE A . n A 1 143 ILE 143 142 142 ILE ILE A . n A 1 144 GLU 144 143 143 GLU GLU A . n A 1 145 THR 145 144 144 THR THR A . n A 1 146 SER 146 145 145 SER SER A . n A 1 147 ALA 147 146 146 ALA ALA A . n A 1 148 LYS 148 147 147 LYS LYS A . n A 1 149 THR 149 148 148 THR THR A . n A 1 150 ARG 150 149 149 ARG ARG A . n A 1 151 GLN 151 150 150 GLN GLN A . n A 1 152 GLY 152 151 151 GLY GLY A . n A 1 153 VAL 153 152 152 VAL VAL A . n A 1 154 ASP 154 153 153 ASP ASP A . n A 1 155 ASP 155 154 154 ASP ASP A . n A 1 156 ALA 156 155 155 ALA ALA A . n A 1 157 PHE 157 156 156 PHE PHE A . n A 1 158 TYR 158 157 157 TYR TYR A . n A 1 159 THR 159 158 158 THR THR A . n A 1 160 LEU 160 159 159 LEU LEU A . n A 1 161 VAL 161 160 160 VAL VAL A . n A 1 162 ARG 162 161 161 ARG ARG A . n A 1 163 GLU 163 162 162 GLU GLU A . n A 1 164 ILE 164 163 163 ILE ILE A . n A 1 165 ARG 165 164 164 ARG ARG A . n A 1 166 LYS 166 165 165 LYS LYS A . n A 1 167 HIS 167 166 166 HIS HIS A . n A 1 168 LYS 168 167 167 LYS LYS A . n A 1 169 GLU 169 168 168 GLU GLU A . n A 1 170 LYS 170 169 169 LYS LYS A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GDP 1 201 201 GDP GDP A . C 3 MG 1 202 301 MG MG A . D 4 0QY 1 203 401 0QY JPB A . E 5 HOH 1 301 1 HOH HOH A . E 5 HOH 2 302 2 HOH HOH A . E 5 HOH 3 303 3 HOH HOH A . E 5 HOH 4 304 4 HOH HOH A . E 5 HOH 5 305 5 HOH HOH A . E 5 HOH 6 306 6 HOH HOH A . E 5 HOH 7 307 7 HOH HOH A . E 5 HOH 8 308 8 HOH HOH A . E 5 HOH 9 309 9 HOH HOH A . E 5 HOH 10 310 10 HOH HOH A . E 5 HOH 11 311 11 HOH HOH A . E 5 HOH 12 312 12 HOH HOH A . E 5 HOH 13 313 13 HOH HOH A . E 5 HOH 14 314 14 HOH HOH A . E 5 HOH 15 315 15 HOH HOH A . E 5 HOH 16 316 16 HOH HOH A . E 5 HOH 17 317 17 HOH HOH A . E 5 HOH 18 318 18 HOH HOH A . E 5 HOH 19 319 19 HOH HOH A . E 5 HOH 20 320 20 HOH HOH A . E 5 HOH 21 321 21 HOH HOH A . E 5 HOH 22 322 22 HOH HOH A . E 5 HOH 23 323 23 HOH HOH A . E 5 HOH 24 324 24 HOH HOH A . E 5 HOH 25 325 25 HOH HOH A . E 5 HOH 26 326 26 HOH HOH A . E 5 HOH 27 327 27 HOH HOH A . E 5 HOH 28 328 28 HOH HOH A . E 5 HOH 29 329 29 HOH HOH A . E 5 HOH 30 330 30 HOH HOH A . E 5 HOH 31 331 31 HOH HOH A . E 5 HOH 32 332 32 HOH HOH A . E 5 HOH 33 333 33 HOH HOH A . E 5 HOH 34 334 34 HOH HOH A . E 5 HOH 35 335 35 HOH HOH A . E 5 HOH 36 336 36 HOH HOH A . E 5 HOH 37 337 37 HOH HOH A . E 5 HOH 38 338 38 HOH HOH A . E 5 HOH 39 339 39 HOH HOH A . E 5 HOH 40 340 40 HOH HOH A . E 5 HOH 41 341 41 HOH HOH A . E 5 HOH 42 342 42 HOH HOH A . E 5 HOH 43 343 43 HOH HOH A . E 5 HOH 44 344 44 HOH HOH A . E 5 HOH 45 345 45 HOH HOH A . E 5 HOH 46 346 46 HOH HOH A . E 5 HOH 47 347 47 HOH HOH A . E 5 HOH 48 348 48 HOH HOH A . E 5 HOH 49 349 49 HOH HOH A . E 5 HOH 50 350 50 HOH HOH A . E 5 HOH 51 351 51 HOH HOH A . E 5 HOH 52 352 52 HOH HOH A . E 5 HOH 53 353 53 HOH HOH A . E 5 HOH 54 354 54 HOH HOH A . E 5 HOH 55 355 55 HOH HOH A . E 5 HOH 56 356 56 HOH HOH A . E 5 HOH 57 357 57 HOH HOH A . E 5 HOH 58 358 58 HOH HOH A . E 5 HOH 59 359 59 HOH HOH A . E 5 HOH 60 360 60 HOH HOH A . E 5 HOH 61 361 61 HOH HOH A . E 5 HOH 62 362 62 HOH HOH A . E 5 HOH 63 363 63 HOH HOH A . E 5 HOH 64 364 64 HOH HOH A . E 5 HOH 65 365 65 HOH HOH A . E 5 HOH 66 366 66 HOH HOH A . E 5 HOH 67 367 67 HOH HOH A . E 5 HOH 68 368 68 HOH HOH A . E 5 HOH 69 369 69 HOH HOH A . E 5 HOH 70 370 70 HOH HOH A . E 5 HOH 71 371 71 HOH HOH A . E 5 HOH 72 372 72 HOH HOH A . E 5 HOH 73 373 73 HOH HOH A . E 5 HOH 74 374 74 HOH HOH A . E 5 HOH 75 375 75 HOH HOH A . E 5 HOH 76 376 76 HOH HOH A . E 5 HOH 77 377 77 HOH HOH A . E 5 HOH 78 378 78 HOH HOH A . E 5 HOH 79 379 79 HOH HOH A . E 5 HOH 80 380 80 HOH HOH A . E 5 HOH 81 381 81 HOH HOH A . E 5 HOH 82 382 82 HOH HOH A . E 5 HOH 83 383 83 HOH HOH A . E 5 HOH 84 384 84 HOH HOH A . E 5 HOH 85 385 85 HOH HOH A . E 5 HOH 86 386 86 HOH HOH A . E 5 HOH 87 387 87 HOH HOH A . E 5 HOH 88 388 88 HOH HOH A . E 5 HOH 89 389 89 HOH HOH A . E 5 HOH 90 390 90 HOH HOH A . E 5 HOH 91 391 91 HOH HOH A . E 5 HOH 92 392 92 HOH HOH A . E 5 HOH 93 393 93 HOH HOH A . E 5 HOH 94 394 94 HOH HOH A . E 5 HOH 95 395 95 HOH HOH A . E 5 HOH 96 396 96 HOH HOH A . E 5 HOH 97 397 97 HOH HOH A . E 5 HOH 98 398 98 HOH HOH A . E 5 HOH 99 399 99 HOH HOH A . E 5 HOH 100 400 100 HOH HOH A . E 5 HOH 101 401 101 HOH HOH A . E 5 HOH 102 402 102 HOH HOH A . E 5 HOH 103 403 103 HOH HOH A . E 5 HOH 104 404 104 HOH HOH A . E 5 HOH 105 405 105 HOH HOH A . E 5 HOH 106 406 106 HOH HOH A . E 5 HOH 107 407 107 HOH HOH A . E 5 HOH 108 408 108 HOH HOH A . E 5 HOH 109 409 109 HOH HOH A . E 5 HOH 110 410 110 HOH HOH A . E 5 HOH 111 411 111 HOH HOH A . E 5 HOH 112 412 112 HOH HOH A . E 5 HOH 113 413 113 HOH HOH A . E 5 HOH 114 414 114 HOH HOH A . E 5 HOH 115 415 115 HOH HOH A . E 5 HOH 116 416 116 HOH HOH A . E 5 HOH 117 417 117 HOH HOH A . E 5 HOH 118 418 118 HOH HOH A . E 5 HOH 119 419 119 HOH HOH A . E 5 HOH 120 420 120 HOH HOH A . E 5 HOH 121 421 121 HOH HOH A . E 5 HOH 122 422 122 HOH HOH A . E 5 HOH 123 423 123 HOH HOH A . E 5 HOH 124 424 124 HOH HOH A . E 5 HOH 125 425 125 HOH HOH A . E 5 HOH 126 426 126 HOH HOH A . E 5 HOH 127 427 127 HOH HOH A . E 5 HOH 128 428 128 HOH HOH A . E 5 HOH 129 429 129 HOH HOH A . E 5 HOH 130 430 130 HOH HOH A . E 5 HOH 131 431 131 HOH HOH A . E 5 HOH 132 432 132 HOH HOH A . E 5 HOH 133 433 133 HOH HOH A . E 5 HOH 134 434 134 HOH HOH A . E 5 HOH 135 435 135 HOH HOH A . E 5 HOH 136 436 136 HOH HOH A . E 5 HOH 137 437 137 HOH HOH A . E 5 HOH 138 438 138 HOH HOH A . E 5 HOH 139 439 139 HOH HOH A . E 5 HOH 140 440 140 HOH HOH A . E 5 HOH 141 441 141 HOH HOH A . E 5 HOH 142 442 142 HOH HOH A . E 5 HOH 143 443 143 HOH HOH A . E 5 HOH 144 444 144 HOH HOH A . E 5 HOH 145 445 145 HOH HOH A . E 5 HOH 146 446 146 HOH HOH A . E 5 HOH 147 447 147 HOH HOH A . E 5 HOH 148 448 148 HOH HOH A . E 5 HOH 149 449 149 HOH HOH A . E 5 HOH 150 450 150 HOH HOH A . E 5 HOH 151 451 151 HOH HOH A . E 5 HOH 152 452 152 HOH HOH A . E 5 HOH 153 453 153 HOH HOH A . E 5 HOH 154 454 154 HOH HOH A . E 5 HOH 155 455 155 HOH HOH A . E 5 HOH 156 456 156 HOH HOH A . E 5 HOH 157 457 157 HOH HOH A . E 5 HOH 158 458 158 HOH HOH A . E 5 HOH 159 459 159 HOH HOH A . E 5 HOH 160 460 160 HOH HOH A . E 5 HOH 161 461 161 HOH HOH A . E 5 HOH 162 462 162 HOH HOH A . E 5 HOH 163 463 163 HOH HOH A . E 5 HOH 164 464 164 HOH HOH A . E 5 HOH 165 465 165 HOH HOH A . E 5 HOH 166 466 166 HOH HOH A . E 5 HOH 167 467 167 HOH HOH A . E 5 HOH 168 468 168 HOH HOH A . E 5 HOH 169 469 169 HOH HOH A . E 5 HOH 170 470 170 HOH HOH A . E 5 HOH 171 471 171 HOH HOH A . E 5 HOH 172 472 172 HOH HOH A . E 5 HOH 173 473 173 HOH HOH A . E 5 HOH 174 474 174 HOH HOH A . E 5 HOH 175 475 175 HOH HOH A . E 5 HOH 176 476 176 HOH HOH A . E 5 HOH 177 477 177 HOH HOH A . E 5 HOH 178 478 178 HOH HOH A . E 5 HOH 179 479 179 HOH HOH A . E 5 HOH 180 480 180 HOH HOH A . E 5 HOH 181 481 181 HOH HOH A . E 5 HOH 182 482 182 HOH HOH A . E 5 HOH 183 483 183 HOH HOH A . E 5 HOH 184 484 184 HOH HOH A . E 5 HOH 185 485 185 HOH HOH A . E 5 HOH 186 486 186 HOH HOH A . E 5 HOH 187 487 187 HOH HOH A . E 5 HOH 188 488 188 HOH HOH A . E 5 HOH 189 489 189 HOH HOH A . E 5 HOH 190 490 190 HOH HOH A . E 5 HOH 191 491 191 HOH HOH A . E 5 HOH 192 492 192 HOH HOH A . E 5 HOH 193 493 193 HOH HOH A . E 5 HOH 194 494 194 HOH HOH A . E 5 HOH 195 495 195 HOH HOH A . E 5 HOH 196 496 196 HOH HOH A . E 5 HOH 197 497 197 HOH HOH A . E 5 HOH 198 498 198 HOH HOH A . E 5 HOH 199 499 199 HOH HOH A . E 5 HOH 200 500 200 HOH HOH A . E 5 HOH 201 501 201 HOH HOH A . E 5 HOH 202 502 202 HOH HOH A . E 5 HOH 203 503 203 HOH HOH A . E 5 HOH 204 504 204 HOH HOH A . E 5 HOH 205 505 205 HOH HOH A . E 5 HOH 206 506 206 HOH HOH A . E 5 HOH 207 507 207 HOH HOH A . E 5 HOH 208 508 208 HOH HOH A . E 5 HOH 209 509 209 HOH HOH A . E 5 HOH 210 510 210 HOH HOH A . E 5 HOH 211 511 211 HOH HOH A . E 5 HOH 212 512 212 HOH HOH A . E 5 HOH 213 513 213 HOH HOH A . E 5 HOH 214 514 214 HOH HOH A . E 5 HOH 215 515 215 HOH HOH A . E 5 HOH 216 516 216 HOH HOH A . E 5 HOH 217 517 217 HOH HOH A . E 5 HOH 218 518 218 HOH HOH A . E 5 HOH 219 519 219 HOH HOH A . E 5 HOH 220 520 220 HOH HOH A . E 5 HOH 221 521 221 HOH HOH A . E 5 HOH 222 522 222 HOH HOH A . E 5 HOH 223 523 223 HOH HOH A . E 5 HOH 224 524 224 HOH HOH A . E 5 HOH 225 525 225 HOH HOH A . E 5 HOH 226 526 226 HOH HOH A . E 5 HOH 227 527 227 HOH HOH A . E 5 HOH 228 528 228 HOH HOH A . E 5 HOH 229 529 229 HOH HOH A . E 5 HOH 230 530 230 HOH HOH A . E 5 HOH 231 531 231 HOH HOH A . E 5 HOH 232 532 232 HOH HOH A . E 5 HOH 233 533 233 HOH HOH A . E 5 HOH 234 534 234 HOH HOH A . E 5 HOH 235 535 235 HOH HOH A . E 5 HOH 236 536 236 HOH HOH A . E 5 HOH 237 537 237 HOH HOH A . E 5 HOH 238 538 238 HOH HOH A . E 5 HOH 239 539 239 HOH HOH A . E 5 HOH 240 540 240 HOH HOH A . E 5 HOH 241 541 241 HOH HOH A . E 5 HOH 242 542 242 HOH HOH A . E 5 HOH 243 543 243 HOH HOH A . E 5 HOH 244 544 244 HOH HOH A . E 5 HOH 245 545 245 HOH HOH A . E 5 HOH 246 546 246 HOH HOH A . E 5 HOH 247 547 247 HOH HOH A . E 5 HOH 248 548 248 HOH HOH A . E 5 HOH 249 549 249 HOH HOH A . E 5 HOH 250 550 250 HOH HOH A . E 5 HOH 251 551 251 HOH HOH A . E 5 HOH 252 552 252 HOH HOH A . E 5 HOH 253 553 253 HOH HOH A . E 5 HOH 254 554 254 HOH HOH A . E 5 HOH 255 555 255 HOH HOH A . E 5 HOH 256 556 256 HOH HOH A . E 5 HOH 257 557 257 HOH HOH A . E 5 HOH 258 558 258 HOH HOH A . E 5 HOH 259 559 259 HOH HOH A . E 5 HOH 260 560 260 HOH HOH A . E 5 HOH 261 561 261 HOH HOH A . E 5 HOH 262 562 262 HOH HOH A . E 5 HOH 263 563 263 HOH HOH A . E 5 HOH 264 564 264 HOH HOH A . E 5 HOH 265 565 265 HOH HOH A . E 5 HOH 266 566 266 HOH HOH A . E 5 HOH 267 567 267 HOH HOH A . E 5 HOH 268 568 268 HOH HOH A . E 5 HOH 269 569 269 HOH HOH A . E 5 HOH 270 570 270 HOH HOH A . E 5 HOH 271 571 271 HOH HOH A . E 5 HOH 272 572 272 HOH HOH A . E 5 HOH 273 573 273 HOH HOH A . E 5 HOH 274 574 274 HOH HOH A . E 5 HOH 275 575 275 HOH HOH A . E 5 HOH 276 576 276 HOH HOH A . E 5 HOH 277 577 277 HOH HOH A . E 5 HOH 278 578 278 HOH HOH A . E 5 HOH 279 579 279 HOH HOH A . E 5 HOH 280 580 280 HOH HOH A . E 5 HOH 281 581 281 HOH HOH A . E 5 HOH 282 582 282 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OG ? A SER 18 ? A SER 17 ? 1_555 MG ? C MG . ? A MG 202 ? 1_555 O1B ? B GDP . ? A GDP 201 ? 1_555 90.3 ? 2 OG ? A SER 18 ? A SER 17 ? 1_555 MG ? C MG . ? A MG 202 ? 1_555 O ? E HOH . ? A HOH 304 ? 1_555 93.4 ? 3 O1B ? B GDP . ? A GDP 201 ? 1_555 MG ? C MG . ? A MG 202 ? 1_555 O ? E HOH . ? A HOH 304 ? 1_555 169.6 ? 4 OG ? A SER 18 ? A SER 17 ? 1_555 MG ? C MG . ? A MG 202 ? 1_555 O ? E HOH . ? A HOH 305 ? 1_555 83.6 ? 5 O1B ? B GDP . ? A GDP 201 ? 1_555 MG ? C MG . ? A MG 202 ? 1_555 O ? E HOH . ? A HOH 305 ? 1_555 88.8 ? 6 O ? E HOH . ? A HOH 304 ? 1_555 MG ? C MG . ? A MG 202 ? 1_555 O ? E HOH . ? A HOH 305 ? 1_555 101.3 ? 7 OG ? A SER 18 ? A SER 17 ? 1_555 MG ? C MG . ? A MG 202 ? 1_555 O ? E HOH . ? A HOH 314 ? 1_555 87.7 ? 8 O1B ? B GDP . ? A GDP 201 ? 1_555 MG ? C MG . ? A MG 202 ? 1_555 O ? E HOH . ? A HOH 314 ? 1_555 88.2 ? 9 O ? E HOH . ? A HOH 304 ? 1_555 MG ? C MG . ? A MG 202 ? 1_555 O ? E HOH . ? A HOH 314 ? 1_555 82.2 ? 10 O ? E HOH . ? A HOH 305 ? 1_555 MG ? C MG . ? A MG 202 ? 1_555 O ? E HOH . ? A HOH 314 ? 1_555 170.8 ? 11 OG ? A SER 18 ? A SER 17 ? 1_555 MG ? C MG . ? A MG 202 ? 1_555 O ? E HOH . ? A HOH 450 ? 1_555 176.5 ? 12 O1B ? B GDP . ? A GDP 201 ? 1_555 MG ? C MG . ? A MG 202 ? 1_555 O ? E HOH . ? A HOH 450 ? 1_555 91.6 ? 13 O ? E HOH . ? A HOH 304 ? 1_555 MG ? C MG . ? A MG 202 ? 1_555 O ? E HOH . ? A HOH 450 ? 1_555 85.2 ? 14 O ? E HOH . ? A HOH 305 ? 1_555 MG ? C MG . ? A MG 202 ? 1_555 O ? E HOH . ? A HOH 450 ? 1_555 93.5 ? 15 O ? E HOH . ? A HOH 314 ? 1_555 MG ? C MG . ? A MG 202 ? 1_555 O ? E HOH . ? A HOH 450 ? 1_555 95.3 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2012-05-23 2 'Structure model' 1 1 2012-07-25 3 'Structure model' 1 2 2023-09-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_initial_refinement_model 5 3 'Structure model' pdbx_struct_conn_angle 6 3 'Structure model' struct_conn 7 3 'Structure model' struct_ref_seq_dif 8 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 4 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 5 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 6 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 7 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 8 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 9 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 10 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 11 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 12 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 13 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 14 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 15 3 'Structure model' '_pdbx_struct_conn_angle.value' 16 3 'Structure model' '_struct_conn.pdbx_dist_value' 17 3 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 18 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 19 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 20 3 'Structure model' '_struct_conn.ptnr1_label_atom_id' 21 3 'Structure model' '_struct_conn.ptnr1_label_comp_id' 22 3 'Structure model' '_struct_conn.ptnr1_label_seq_id' 23 3 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 24 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 25 3 'Structure model' '_struct_conn.ptnr2_label_asym_id' 26 3 'Structure model' '_struct_conn.ptnr2_label_atom_id' 27 3 'Structure model' '_struct_conn.ptnr2_label_comp_id' 28 3 'Structure model' '_struct_ref_seq_dif.details' 29 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 30 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 31 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal 'PROTEUM PLUS' 'data collection' PLUS ? 1 PHASER phasing . ? 2 PHENIX refinement '(phenix.refine: 1.7.2_869)' ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A HOH 538 ? ? O A HOH 542 ? ? 1.88 2 1 O A HOH 561 ? ? O A HOH 565 ? ? 1.94 3 1 O A HOH 376 ? ? O A HOH 465 ? ? 1.95 4 1 O A HOH 550 ? ? O A HOH 581 ? ? 1.98 5 1 O A HOH 462 ? ? O A HOH 524 ? ? 1.99 6 1 OE2 A GLU 91 ? ? O A HOH 507 ? ? 2.00 7 1 O A HOH 515 ? ? O A HOH 531 ? ? 2.03 8 1 OE2 A GLU 76 ? ? O A HOH 348 ? ? 2.19 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 O A HOH 560 ? ? 1_555 O A HOH 562 ? ? 3_545 1.77 2 1 O A HOH 496 ? ? 1_555 O A HOH 505 ? ? 3_545 1.94 3 1 O A HOH 429 ? ? 1_555 O A HOH 465 ? ? 1_655 2.06 # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id LYS _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 117 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi 71.29 _pdbx_validate_torsion.psi 33.83 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 0QY O01 O N N 1 0QY C02 C N N 2 0QY C03 C N S 3 0QY N04 N N N 4 0QY C05 C N N 5 0QY C06 C N N 6 0QY C07 C N N 7 0QY N08 N N N 8 0QY C09 C Y N 9 0QY C10 C Y N 10 0QY C11 C Y N 11 0QY C12 C Y N 12 0QY C13 C Y N 13 0QY C14 C Y N 14 0QY N15 N Y N 15 0QY C16 C Y N 16 0QY C17 C N N 17 0QY C18 C Y N 18 0QY C19 C Y N 19 0QY N20 N Y N 20 0QY C21 C Y N 21 0QY C22 C Y N 22 0QY C23 C Y N 23 0QY C24 C Y N 24 0QY C25 C Y N 25 0QY C26 C Y N 26 0QY N27 N Y N 27 0QY H1 H N N 28 0QY H2 H N N 29 0QY H4 H N N 30 0QY H5 H N N 31 0QY H6 H N N 32 0QY H7 H N N 33 0QY H8 H N N 34 0QY H9 H N N 35 0QY H10 H N N 36 0QY H11 H N N 37 0QY H12 H N N 38 0QY H13 H N N 39 0QY H14 H N N 40 0QY H15 H N N 41 0QY H16 H N N 42 0QY H17 H N N 43 0QY H18 H N N 44 0QY H19 H N N 45 0QY H20 H N N 46 0QY H21 H N N 47 0QY H22 H N N 48 ALA N N N N 49 ALA CA C N S 50 ALA C C N N 51 ALA O O N N 52 ALA CB C N N 53 ALA OXT O N N 54 ALA H H N N 55 ALA H2 H N N 56 ALA HA H N N 57 ALA HB1 H N N 58 ALA HB2 H N N 59 ALA HB3 H N N 60 ALA HXT H N N 61 ARG N N N N 62 ARG CA C N S 63 ARG C C N N 64 ARG O O N N 65 ARG CB C N N 66 ARG CG C N N 67 ARG CD C N N 68 ARG NE N N N 69 ARG CZ C N N 70 ARG NH1 N N N 71 ARG NH2 N N N 72 ARG OXT O N N 73 ARG H H N N 74 ARG H2 H N N 75 ARG HA H N N 76 ARG HB2 H N N 77 ARG HB3 H N N 78 ARG HG2 H N N 79 ARG HG3 H N N 80 ARG HD2 H N N 81 ARG HD3 H N N 82 ARG HE H N N 83 ARG HH11 H N N 84 ARG HH12 H N N 85 ARG HH21 H N N 86 ARG HH22 H N N 87 ARG HXT H N N 88 ASN N N N N 89 ASN CA C N S 90 ASN C C N N 91 ASN O O N N 92 ASN CB C N N 93 ASN CG C N N 94 ASN OD1 O N N 95 ASN ND2 N N N 96 ASN OXT O N N 97 ASN H H N N 98 ASN H2 H N N 99 ASN HA H N N 100 ASN HB2 H N N 101 ASN HB3 H N N 102 ASN HD21 H N N 103 ASN HD22 H N N 104 ASN HXT H N N 105 ASP N N N N 106 ASP CA C N S 107 ASP C C N N 108 ASP O O N N 109 ASP CB C N N 110 ASP CG C N N 111 ASP OD1 O N N 112 ASP OD2 O N N 113 ASP OXT O N N 114 ASP H H N N 115 ASP H2 H N N 116 ASP HA H N N 117 ASP HB2 H N N 118 ASP HB3 H N N 119 ASP HD2 H N N 120 ASP HXT H N N 121 CYS N N N N 122 CYS CA C N R 123 CYS C C N N 124 CYS O O N N 125 CYS CB C N N 126 CYS SG S N N 127 CYS OXT O N N 128 CYS H H N N 129 CYS H2 H N N 130 CYS HA H N N 131 CYS HB2 H N N 132 CYS HB3 H N N 133 CYS HG H N N 134 CYS HXT H N N 135 GDP PB P N N 136 GDP O1B O N N 137 GDP O2B O N N 138 GDP O3B O N N 139 GDP O3A O N N 140 GDP PA P N N 141 GDP O1A O N N 142 GDP O2A O N N 143 GDP "O5'" O N N 144 GDP "C5'" C N N 145 GDP "C4'" C N R 146 GDP "O4'" O N N 147 GDP "C3'" C N S 148 GDP "O3'" O N N 149 GDP "C2'" C N R 150 GDP "O2'" O N N 151 GDP "C1'" C N R 152 GDP N9 N Y N 153 GDP C8 C Y N 154 GDP N7 N Y N 155 GDP C5 C Y N 156 GDP C6 C N N 157 GDP O6 O N N 158 GDP N1 N N N 159 GDP C2 C N N 160 GDP N2 N N N 161 GDP N3 N N N 162 GDP C4 C Y N 163 GDP HOB2 H N N 164 GDP HOB3 H N N 165 GDP HOA2 H N N 166 GDP "H5'" H N N 167 GDP "H5''" H N N 168 GDP "H4'" H N N 169 GDP "H3'" H N N 170 GDP "HO3'" H N N 171 GDP "H2'" H N N 172 GDP "HO2'" H N N 173 GDP "H1'" H N N 174 GDP H8 H N N 175 GDP HN1 H N N 176 GDP HN21 H N N 177 GDP HN22 H N N 178 GLN N N N N 179 GLN CA C N S 180 GLN C C N N 181 GLN O O N N 182 GLN CB C N N 183 GLN CG C N N 184 GLN CD C N N 185 GLN OE1 O N N 186 GLN NE2 N N N 187 GLN OXT O N N 188 GLN H H N N 189 GLN H2 H N N 190 GLN HA H N N 191 GLN HB2 H N N 192 GLN HB3 H N N 193 GLN HG2 H N N 194 GLN HG3 H N N 195 GLN HE21 H N N 196 GLN HE22 H N N 197 GLN HXT H N N 198 GLU N N N N 199 GLU CA C N S 200 GLU C C N N 201 GLU O O N N 202 GLU CB C N N 203 GLU CG C N N 204 GLU CD C N N 205 GLU OE1 O N N 206 GLU OE2 O N N 207 GLU OXT O N N 208 GLU H H N N 209 GLU H2 H N N 210 GLU HA H N N 211 GLU HB2 H N N 212 GLU HB3 H N N 213 GLU HG2 H N N 214 GLU HG3 H N N 215 GLU HE2 H N N 216 GLU HXT H N N 217 GLY N N N N 218 GLY CA C N N 219 GLY C C N N 220 GLY O O N N 221 GLY OXT O N N 222 GLY H H N N 223 GLY H2 H N N 224 GLY HA2 H N N 225 GLY HA3 H N N 226 GLY HXT H N N 227 HIS N N N N 228 HIS CA C N S 229 HIS C C N N 230 HIS O O N N 231 HIS CB C N N 232 HIS CG C Y N 233 HIS ND1 N Y N 234 HIS CD2 C Y N 235 HIS CE1 C Y N 236 HIS NE2 N Y N 237 HIS OXT O N N 238 HIS H H N N 239 HIS H2 H N N 240 HIS HA H N N 241 HIS HB2 H N N 242 HIS HB3 H N N 243 HIS HD1 H N N 244 HIS HD2 H N N 245 HIS HE1 H N N 246 HIS HE2 H N N 247 HIS HXT H N N 248 HOH O O N N 249 HOH H1 H N N 250 HOH H2 H N N 251 ILE N N N N 252 ILE CA C N S 253 ILE C C N N 254 ILE O O N N 255 ILE CB C N S 256 ILE CG1 C N N 257 ILE CG2 C N N 258 ILE CD1 C N N 259 ILE OXT O N N 260 ILE H H N N 261 ILE H2 H N N 262 ILE HA H N N 263 ILE HB H N N 264 ILE HG12 H N N 265 ILE HG13 H N N 266 ILE HG21 H N N 267 ILE HG22 H N N 268 ILE HG23 H N N 269 ILE HD11 H N N 270 ILE HD12 H N N 271 ILE HD13 H N N 272 ILE HXT H N N 273 LEU N N N N 274 LEU CA C N S 275 LEU C C N N 276 LEU O O N N 277 LEU CB C N N 278 LEU CG C N N 279 LEU CD1 C N N 280 LEU CD2 C N N 281 LEU OXT O N N 282 LEU H H N N 283 LEU H2 H N N 284 LEU HA H N N 285 LEU HB2 H N N 286 LEU HB3 H N N 287 LEU HG H N N 288 LEU HD11 H N N 289 LEU HD12 H N N 290 LEU HD13 H N N 291 LEU HD21 H N N 292 LEU HD22 H N N 293 LEU HD23 H N N 294 LEU HXT H N N 295 LYS N N N N 296 LYS CA C N S 297 LYS C C N N 298 LYS O O N N 299 LYS CB C N N 300 LYS CG C N N 301 LYS CD C N N 302 LYS CE C N N 303 LYS NZ N N N 304 LYS OXT O N N 305 LYS H H N N 306 LYS H2 H N N 307 LYS HA H N N 308 LYS HB2 H N N 309 LYS HB3 H N N 310 LYS HG2 H N N 311 LYS HG3 H N N 312 LYS HD2 H N N 313 LYS HD3 H N N 314 LYS HE2 H N N 315 LYS HE3 H N N 316 LYS HZ1 H N N 317 LYS HZ2 H N N 318 LYS HZ3 H N N 319 LYS HXT H N N 320 MET N N N N 321 MET CA C N S 322 MET C C N N 323 MET O O N N 324 MET CB C N N 325 MET CG C N N 326 MET SD S N N 327 MET CE C N N 328 MET OXT O N N 329 MET H H N N 330 MET H2 H N N 331 MET HA H N N 332 MET HB2 H N N 333 MET HB3 H N N 334 MET HG2 H N N 335 MET HG3 H N N 336 MET HE1 H N N 337 MET HE2 H N N 338 MET HE3 H N N 339 MET HXT H N N 340 MG MG MG N N 341 PHE N N N N 342 PHE CA C N S 343 PHE C C N N 344 PHE O O N N 345 PHE CB C N N 346 PHE CG C Y N 347 PHE CD1 C Y N 348 PHE CD2 C Y N 349 PHE CE1 C Y N 350 PHE CE2 C Y N 351 PHE CZ C Y N 352 PHE OXT O N N 353 PHE H H N N 354 PHE H2 H N N 355 PHE HA H N N 356 PHE HB2 H N N 357 PHE HB3 H N N 358 PHE HD1 H N N 359 PHE HD2 H N N 360 PHE HE1 H N N 361 PHE HE2 H N N 362 PHE HZ H N N 363 PHE HXT H N N 364 PRO N N N N 365 PRO CA C N S 366 PRO C C N N 367 PRO O O N N 368 PRO CB C N N 369 PRO CG C N N 370 PRO CD C N N 371 PRO OXT O N N 372 PRO H H N N 373 PRO HA H N N 374 PRO HB2 H N N 375 PRO HB3 H N N 376 PRO HG2 H N N 377 PRO HG3 H N N 378 PRO HD2 H N N 379 PRO HD3 H N N 380 PRO HXT H N N 381 SER N N N N 382 SER CA C N S 383 SER C C N N 384 SER O O N N 385 SER CB C N N 386 SER OG O N N 387 SER OXT O N N 388 SER H H N N 389 SER H2 H N N 390 SER HA H N N 391 SER HB2 H N N 392 SER HB3 H N N 393 SER HG H N N 394 SER HXT H N N 395 THR N N N N 396 THR CA C N S 397 THR C C N N 398 THR O O N N 399 THR CB C N R 400 THR OG1 O N N 401 THR CG2 C N N 402 THR OXT O N N 403 THR H H N N 404 THR H2 H N N 405 THR HA H N N 406 THR HB H N N 407 THR HG1 H N N 408 THR HG21 H N N 409 THR HG22 H N N 410 THR HG23 H N N 411 THR HXT H N N 412 TYR N N N N 413 TYR CA C N S 414 TYR C C N N 415 TYR O O N N 416 TYR CB C N N 417 TYR CG C Y N 418 TYR CD1 C Y N 419 TYR CD2 C Y N 420 TYR CE1 C Y N 421 TYR CE2 C Y N 422 TYR CZ C Y N 423 TYR OH O N N 424 TYR OXT O N N 425 TYR H H N N 426 TYR H2 H N N 427 TYR HA H N N 428 TYR HB2 H N N 429 TYR HB3 H N N 430 TYR HD1 H N N 431 TYR HD2 H N N 432 TYR HE1 H N N 433 TYR HE2 H N N 434 TYR HH H N N 435 TYR HXT H N N 436 VAL N N N N 437 VAL CA C N S 438 VAL C C N N 439 VAL O O N N 440 VAL CB C N N 441 VAL CG1 C N N 442 VAL CG2 C N N 443 VAL OXT O N N 444 VAL H H N N 445 VAL H2 H N N 446 VAL HA H N N 447 VAL HB H N N 448 VAL HG11 H N N 449 VAL HG12 H N N 450 VAL HG13 H N N 451 VAL HG21 H N N 452 VAL HG22 H N N 453 VAL HG23 H N N 454 VAL HXT H N N 455 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 0QY N20 C19 sing Y N 1 0QY N20 C21 sing Y N 2 0QY C19 C18 doub Y N 3 0QY C22 C21 doub Y N 4 0QY C22 C23 sing Y N 5 0QY C21 C26 sing Y N 6 0QY C18 C26 sing Y N 7 0QY C18 C17 sing N N 8 0QY C26 C25 doub Y N 9 0QY C23 C24 doub Y N 10 0QY C17 C16 sing N N 11 0QY C24 C25 sing Y N 12 0QY N27 C16 doub Y N 13 0QY N27 C13 sing Y N 14 0QY C16 N15 sing Y N 15 0QY C13 C12 doub Y N 16 0QY C13 C14 sing Y N 17 0QY N15 C14 sing Y N 18 0QY C12 C09 sing Y N 19 0QY C14 C11 doub Y N 20 0QY O01 C02 doub N N 21 0QY C05 N04 sing N N 22 0QY C05 C06 sing N N 23 0QY N04 C03 sing N N 24 0QY C09 N08 sing N N 25 0QY C09 C10 doub Y N 26 0QY C02 N08 sing N N 27 0QY C02 C03 sing N N 28 0QY C11 C10 sing Y N 29 0QY C03 C07 sing N N 30 0QY C06 C07 sing N N 31 0QY C03 H1 sing N N 32 0QY N04 H2 sing N N 33 0QY C05 H4 sing N N 34 0QY C05 H5 sing N N 35 0QY C06 H6 sing N N 36 0QY C06 H7 sing N N 37 0QY C07 H8 sing N N 38 0QY C07 H9 sing N N 39 0QY N08 H10 sing N N 40 0QY C10 H11 sing N N 41 0QY C11 H12 sing N N 42 0QY C12 H13 sing N N 43 0QY N15 H14 sing N N 44 0QY C17 H15 sing N N 45 0QY C17 H16 sing N N 46 0QY C19 H17 sing N N 47 0QY N20 H18 sing N N 48 0QY C22 H19 sing N N 49 0QY C23 H20 sing N N 50 0QY C24 H21 sing N N 51 0QY C25 H22 sing N N 52 ALA N CA sing N N 53 ALA N H sing N N 54 ALA N H2 sing N N 55 ALA CA C sing N N 56 ALA CA CB sing N N 57 ALA CA HA sing N N 58 ALA C O doub N N 59 ALA C OXT sing N N 60 ALA CB HB1 sing N N 61 ALA CB HB2 sing N N 62 ALA CB HB3 sing N N 63 ALA OXT HXT sing N N 64 ARG N CA sing N N 65 ARG N H sing N N 66 ARG N H2 sing N N 67 ARG CA C sing N N 68 ARG CA CB sing N N 69 ARG CA HA sing N N 70 ARG C O doub N N 71 ARG C OXT sing N N 72 ARG CB CG sing N N 73 ARG CB HB2 sing N N 74 ARG CB HB3 sing N N 75 ARG CG CD sing N N 76 ARG CG HG2 sing N N 77 ARG CG HG3 sing N N 78 ARG CD NE sing N N 79 ARG CD HD2 sing N N 80 ARG CD HD3 sing N N 81 ARG NE CZ sing N N 82 ARG NE HE sing N N 83 ARG CZ NH1 sing N N 84 ARG CZ NH2 doub N N 85 ARG NH1 HH11 sing N N 86 ARG NH1 HH12 sing N N 87 ARG NH2 HH21 sing N N 88 ARG NH2 HH22 sing N N 89 ARG OXT HXT sing N N 90 ASN N CA sing N N 91 ASN N H sing N N 92 ASN N H2 sing N N 93 ASN CA C sing N N 94 ASN CA CB sing N N 95 ASN CA HA sing N N 96 ASN C O doub N N 97 ASN C OXT sing N N 98 ASN CB CG sing N N 99 ASN CB HB2 sing N N 100 ASN CB HB3 sing N N 101 ASN CG OD1 doub N N 102 ASN CG ND2 sing N N 103 ASN ND2 HD21 sing N N 104 ASN ND2 HD22 sing N N 105 ASN OXT HXT sing N N 106 ASP N CA sing N N 107 ASP N H sing N N 108 ASP N H2 sing N N 109 ASP CA C sing N N 110 ASP CA CB sing N N 111 ASP CA HA sing N N 112 ASP C O doub N N 113 ASP C OXT sing N N 114 ASP CB CG sing N N 115 ASP CB HB2 sing N N 116 ASP CB HB3 sing N N 117 ASP CG OD1 doub N N 118 ASP CG OD2 sing N N 119 ASP OD2 HD2 sing N N 120 ASP OXT HXT sing N N 121 CYS N CA sing N N 122 CYS N H sing N N 123 CYS N H2 sing N N 124 CYS CA C sing N N 125 CYS CA CB sing N N 126 CYS CA HA sing N N 127 CYS C O doub N N 128 CYS C OXT sing N N 129 CYS CB SG sing N N 130 CYS CB HB2 sing N N 131 CYS CB HB3 sing N N 132 CYS SG HG sing N N 133 CYS OXT HXT sing N N 134 GDP PB O1B doub N N 135 GDP PB O2B sing N N 136 GDP PB O3B sing N N 137 GDP PB O3A sing N N 138 GDP O2B HOB2 sing N N 139 GDP O3B HOB3 sing N N 140 GDP O3A PA sing N N 141 GDP PA O1A doub N N 142 GDP PA O2A sing N N 143 GDP PA "O5'" sing N N 144 GDP O2A HOA2 sing N N 145 GDP "O5'" "C5'" sing N N 146 GDP "C5'" "C4'" sing N N 147 GDP "C5'" "H5'" sing N N 148 GDP "C5'" "H5''" sing N N 149 GDP "C4'" "O4'" sing N N 150 GDP "C4'" "C3'" sing N N 151 GDP "C4'" "H4'" sing N N 152 GDP "O4'" "C1'" sing N N 153 GDP "C3'" "O3'" sing N N 154 GDP "C3'" "C2'" sing N N 155 GDP "C3'" "H3'" sing N N 156 GDP "O3'" "HO3'" sing N N 157 GDP "C2'" "O2'" sing N N 158 GDP "C2'" "C1'" sing N N 159 GDP "C2'" "H2'" sing N N 160 GDP "O2'" "HO2'" sing N N 161 GDP "C1'" N9 sing N N 162 GDP "C1'" "H1'" sing N N 163 GDP N9 C8 sing Y N 164 GDP N9 C4 sing Y N 165 GDP C8 N7 doub Y N 166 GDP C8 H8 sing N N 167 GDP N7 C5 sing Y N 168 GDP C5 C6 sing N N 169 GDP C5 C4 doub Y N 170 GDP C6 O6 doub N N 171 GDP C6 N1 sing N N 172 GDP N1 C2 sing N N 173 GDP N1 HN1 sing N N 174 GDP C2 N2 sing N N 175 GDP C2 N3 doub N N 176 GDP N2 HN21 sing N N 177 GDP N2 HN22 sing N N 178 GDP N3 C4 sing N N 179 GLN N CA sing N N 180 GLN N H sing N N 181 GLN N H2 sing N N 182 GLN CA C sing N N 183 GLN CA CB sing N N 184 GLN CA HA sing N N 185 GLN C O doub N N 186 GLN C OXT sing N N 187 GLN CB CG sing N N 188 GLN CB HB2 sing N N 189 GLN CB HB3 sing N N 190 GLN CG CD sing N N 191 GLN CG HG2 sing N N 192 GLN CG HG3 sing N N 193 GLN CD OE1 doub N N 194 GLN CD NE2 sing N N 195 GLN NE2 HE21 sing N N 196 GLN NE2 HE22 sing N N 197 GLN OXT HXT sing N N 198 GLU N CA sing N N 199 GLU N H sing N N 200 GLU N H2 sing N N 201 GLU CA C sing N N 202 GLU CA CB sing N N 203 GLU CA HA sing N N 204 GLU C O doub N N 205 GLU C OXT sing N N 206 GLU CB CG sing N N 207 GLU CB HB2 sing N N 208 GLU CB HB3 sing N N 209 GLU CG CD sing N N 210 GLU CG HG2 sing N N 211 GLU CG HG3 sing N N 212 GLU CD OE1 doub N N 213 GLU CD OE2 sing N N 214 GLU OE2 HE2 sing N N 215 GLU OXT HXT sing N N 216 GLY N CA sing N N 217 GLY N H sing N N 218 GLY N H2 sing N N 219 GLY CA C sing N N 220 GLY CA HA2 sing N N 221 GLY CA HA3 sing N N 222 GLY C O doub N N 223 GLY C OXT sing N N 224 GLY OXT HXT sing N N 225 HIS N CA sing N N 226 HIS N H sing N N 227 HIS N H2 sing N N 228 HIS CA C sing N N 229 HIS CA CB sing N N 230 HIS CA HA sing N N 231 HIS C O doub N N 232 HIS C OXT sing N N 233 HIS CB CG sing N N 234 HIS CB HB2 sing N N 235 HIS CB HB3 sing N N 236 HIS CG ND1 sing Y N 237 HIS CG CD2 doub Y N 238 HIS ND1 CE1 doub Y N 239 HIS ND1 HD1 sing N N 240 HIS CD2 NE2 sing Y N 241 HIS CD2 HD2 sing N N 242 HIS CE1 NE2 sing Y N 243 HIS CE1 HE1 sing N N 244 HIS NE2 HE2 sing N N 245 HIS OXT HXT sing N N 246 HOH O H1 sing N N 247 HOH O H2 sing N N 248 ILE N CA sing N N 249 ILE N H sing N N 250 ILE N H2 sing N N 251 ILE CA C sing N N 252 ILE CA CB sing N N 253 ILE CA HA sing N N 254 ILE C O doub N N 255 ILE C OXT sing N N 256 ILE CB CG1 sing N N 257 ILE CB CG2 sing N N 258 ILE CB HB sing N N 259 ILE CG1 CD1 sing N N 260 ILE CG1 HG12 sing N N 261 ILE CG1 HG13 sing N N 262 ILE CG2 HG21 sing N N 263 ILE CG2 HG22 sing N N 264 ILE CG2 HG23 sing N N 265 ILE CD1 HD11 sing N N 266 ILE CD1 HD12 sing N N 267 ILE CD1 HD13 sing N N 268 ILE OXT HXT sing N N 269 LEU N CA sing N N 270 LEU N H sing N N 271 LEU N H2 sing N N 272 LEU CA C sing N N 273 LEU CA CB sing N N 274 LEU CA HA sing N N 275 LEU C O doub N N 276 LEU C OXT sing N N 277 LEU CB CG sing N N 278 LEU CB HB2 sing N N 279 LEU CB HB3 sing N N 280 LEU CG CD1 sing N N 281 LEU CG CD2 sing N N 282 LEU CG HG sing N N 283 LEU CD1 HD11 sing N N 284 LEU CD1 HD12 sing N N 285 LEU CD1 HD13 sing N N 286 LEU CD2 HD21 sing N N 287 LEU CD2 HD22 sing N N 288 LEU CD2 HD23 sing N N 289 LEU OXT HXT sing N N 290 LYS N CA sing N N 291 LYS N H sing N N 292 LYS N H2 sing N N 293 LYS CA C sing N N 294 LYS CA CB sing N N 295 LYS CA HA sing N N 296 LYS C O doub N N 297 LYS C OXT sing N N 298 LYS CB CG sing N N 299 LYS CB HB2 sing N N 300 LYS CB HB3 sing N N 301 LYS CG CD sing N N 302 LYS CG HG2 sing N N 303 LYS CG HG3 sing N N 304 LYS CD CE sing N N 305 LYS CD HD2 sing N N 306 LYS CD HD3 sing N N 307 LYS CE NZ sing N N 308 LYS CE HE2 sing N N 309 LYS CE HE3 sing N N 310 LYS NZ HZ1 sing N N 311 LYS NZ HZ2 sing N N 312 LYS NZ HZ3 sing N N 313 LYS OXT HXT sing N N 314 MET N CA sing N N 315 MET N H sing N N 316 MET N H2 sing N N 317 MET CA C sing N N 318 MET CA CB sing N N 319 MET CA HA sing N N 320 MET C O doub N N 321 MET C OXT sing N N 322 MET CB CG sing N N 323 MET CB HB2 sing N N 324 MET CB HB3 sing N N 325 MET CG SD sing N N 326 MET CG HG2 sing N N 327 MET CG HG3 sing N N 328 MET SD CE sing N N 329 MET CE HE1 sing N N 330 MET CE HE2 sing N N 331 MET CE HE3 sing N N 332 MET OXT HXT sing N N 333 PHE N CA sing N N 334 PHE N H sing N N 335 PHE N H2 sing N N 336 PHE CA C sing N N 337 PHE CA CB sing N N 338 PHE CA HA sing N N 339 PHE C O doub N N 340 PHE C OXT sing N N 341 PHE CB CG sing N N 342 PHE CB HB2 sing N N 343 PHE CB HB3 sing N N 344 PHE CG CD1 doub Y N 345 PHE CG CD2 sing Y N 346 PHE CD1 CE1 sing Y N 347 PHE CD1 HD1 sing N N 348 PHE CD2 CE2 doub Y N 349 PHE CD2 HD2 sing N N 350 PHE CE1 CZ doub Y N 351 PHE CE1 HE1 sing N N 352 PHE CE2 CZ sing Y N 353 PHE CE2 HE2 sing N N 354 PHE CZ HZ sing N N 355 PHE OXT HXT sing N N 356 PRO N CA sing N N 357 PRO N CD sing N N 358 PRO N H sing N N 359 PRO CA C sing N N 360 PRO CA CB sing N N 361 PRO CA HA sing N N 362 PRO C O doub N N 363 PRO C OXT sing N N 364 PRO CB CG sing N N 365 PRO CB HB2 sing N N 366 PRO CB HB3 sing N N 367 PRO CG CD sing N N 368 PRO CG HG2 sing N N 369 PRO CG HG3 sing N N 370 PRO CD HD2 sing N N 371 PRO CD HD3 sing N N 372 PRO OXT HXT sing N N 373 SER N CA sing N N 374 SER N H sing N N 375 SER N H2 sing N N 376 SER CA C sing N N 377 SER CA CB sing N N 378 SER CA HA sing N N 379 SER C O doub N N 380 SER C OXT sing N N 381 SER CB OG sing N N 382 SER CB HB2 sing N N 383 SER CB HB3 sing N N 384 SER OG HG sing N N 385 SER OXT HXT sing N N 386 THR N CA sing N N 387 THR N H sing N N 388 THR N H2 sing N N 389 THR CA C sing N N 390 THR CA CB sing N N 391 THR CA HA sing N N 392 THR C O doub N N 393 THR C OXT sing N N 394 THR CB OG1 sing N N 395 THR CB CG2 sing N N 396 THR CB HB sing N N 397 THR OG1 HG1 sing N N 398 THR CG2 HG21 sing N N 399 THR CG2 HG22 sing N N 400 THR CG2 HG23 sing N N 401 THR OXT HXT sing N N 402 TYR N CA sing N N 403 TYR N H sing N N 404 TYR N H2 sing N N 405 TYR CA C sing N N 406 TYR CA CB sing N N 407 TYR CA HA sing N N 408 TYR C O doub N N 409 TYR C OXT sing N N 410 TYR CB CG sing N N 411 TYR CB HB2 sing N N 412 TYR CB HB3 sing N N 413 TYR CG CD1 doub Y N 414 TYR CG CD2 sing Y N 415 TYR CD1 CE1 sing Y N 416 TYR CD1 HD1 sing N N 417 TYR CD2 CE2 doub Y N 418 TYR CD2 HD2 sing N N 419 TYR CE1 CZ doub Y N 420 TYR CE1 HE1 sing N N 421 TYR CE2 CZ sing Y N 422 TYR CE2 HE2 sing N N 423 TYR CZ OH sing N N 424 TYR OH HH sing N N 425 TYR OXT HXT sing N N 426 VAL N CA sing N N 427 VAL N H sing N N 428 VAL N H2 sing N N 429 VAL CA C sing N N 430 VAL CA CB sing N N 431 VAL CA HA sing N N 432 VAL C O doub N N 433 VAL C OXT sing N N 434 VAL CB CG1 sing N N 435 VAL CB CG2 sing N N 436 VAL CB HB sing N N 437 VAL CG1 HG11 sing N N 438 VAL CG1 HG12 sing N N 439 VAL CG1 HG13 sing N N 440 VAL CG2 HG21 sing N N 441 VAL CG2 HG22 sing N N 442 VAL CG2 HG23 sing N N 443 VAL OXT HXT sing N N 444 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 "GUANOSINE-5'-DIPHOSPHATE" GDP 3 'MAGNESIUM ION' MG 4 'N-[2-(1H-indol-3-ylmethyl)-1H-benzimidazol-5-yl]-L-prolinamide' 0QY 5 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 4EPV _pdbx_initial_refinement_model.details ? #