HEADER UNKNOWN FUNCTION 18-APR-12 4EQ8 TITLE CRYSTAL STRUCTURE OF PA1844 FROM PSEUDOMONAS AERUGINOSA PAO1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PA1844 PROTEIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 208964; SOURCE 4 STRAIN: PAO1; SOURCE 5 GENE: PA1844; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET21B KEYWDS EFFECTOR PROTEIN, TYPE VI SECRETION, T6S, TOXIN, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR G.SHANG,N.LI,J.ZHANG,D.LU,Q.YU,Y.ZHAO,X.LIU,S.XU,L.GU REVDAT 3 13-NOV-24 4EQ8 1 REMARK SEQADV LINK REVDAT 2 24-JUL-13 4EQ8 1 JRNL REVDAT 1 12-SEP-12 4EQ8 0 JRNL AUTH G.SHANG,X.LIU,D.LU,J.ZHANG,N.LI,C.ZHU,S.LIU,Q.YU,Y.ZHAO, JRNL AUTH 2 H.ZHANG,J.HU,H.CANG,S.XU,L.GU JRNL TITL STRUCTURAL INSIGHT INTO HOW PSEUDOMONAS AERUGINOSA JRNL TITL 2 PEPTIDOGLYCANHYDROLASE TSE1 AND ITS IMMUNITY PROTEIN TSI1 JRNL TITL 3 FUNCTION. JRNL REF BIOCHEM.J. V. 448 201 2012 JRNL REFN ISSN 0264-6021 JRNL PMID 22931054 JRNL DOI 10.1042/BJ20120668 REMARK 2 REMARK 2 RESOLUTION. 1.39 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.6.4_486) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : MLHL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.39 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.72 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.180 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 3 NUMBER OF REFLECTIONS : 29080 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.162 REMARK 3 R VALUE (WORKING SET) : 0.161 REMARK 3 FREE R VALUE : 0.174 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.900 REMARK 3 FREE R VALUE TEST SET COUNT : 2007 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 31.7287 - 3.3532 1.00 2137 158 0.1690 0.1601 REMARK 3 2 3.3532 - 2.6620 1.00 2020 148 0.1616 0.1798 REMARK 3 3 2.6620 - 2.3256 0.99 2003 154 0.1698 0.1786 REMARK 3 4 2.3256 - 2.1130 0.99 1991 142 0.1530 0.1772 REMARK 3 5 2.1130 - 1.9616 0.99 1935 150 0.1523 0.1651 REMARK 3 6 1.9616 - 1.8460 0.98 1955 141 0.1528 0.1830 REMARK 3 7 1.8460 - 1.7535 0.98 1950 143 0.1486 0.1641 REMARK 3 8 1.7535 - 1.6772 0.97 1915 147 0.1447 0.1674 REMARK 3 9 1.6772 - 1.6126 0.97 1874 143 0.1452 0.1839 REMARK 3 10 1.6126 - 1.5570 0.96 1903 131 0.1492 0.1820 REMARK 3 11 1.5570 - 1.5083 0.95 1894 137 0.1501 0.1732 REMARK 3 12 1.5083 - 1.4652 0.95 1841 137 0.1659 0.1948 REMARK 3 13 1.4652 - 1.4266 0.95 1822 137 0.1900 0.1883 REMARK 3 14 1.4266 - 1.3918 0.93 1833 139 0.2095 0.2163 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.37 REMARK 3 B_SOL : 40.04 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.130 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 14.390 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 12.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.82550 REMARK 3 B22 (A**2) : -0.39370 REMARK 3 B33 (A**2) : -2.43180 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 1305 REMARK 3 ANGLE : 0.994 1777 REMARK 3 CHIRALITY : 0.064 188 REMARK 3 PLANARITY : 0.004 232 REMARK 3 DIHEDRAL : 11.942 494 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 24.2092 30.4898 31.4178 REMARK 3 T TENSOR REMARK 3 T11: 0.0321 T22: 0.0331 REMARK 3 T33: 0.0440 T12: 0.0004 REMARK 3 T13: 0.0074 T23: 0.0014 REMARK 3 L TENSOR REMARK 3 L11: 0.9441 L22: 0.9951 REMARK 3 L33: 1.9637 L12: 0.0685 REMARK 3 L13: 0.1679 L23: 0.3082 REMARK 3 S TENSOR REMARK 3 S11: -0.0362 S12: -0.0002 S13: 0.0272 REMARK 3 S21: -0.0106 S22: 0.0181 S23: 0.0190 REMARK 3 S31: -0.1016 S32: -0.0379 S33: 0.0151 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4EQ8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 29-APR-12. REMARK 100 THE DEPOSITION ID IS D_1000071936. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-OCT-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9792 REMARK 200 MONOCHROMATOR : SAGITALLY FOCUSED SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29529 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.390 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : 14.20 REMARK 200 R MERGE (I) : 0.10800 REMARK 200 R SYM (I) : 0.10800 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 31.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.39 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.44 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.6 REMARK 200 DATA REDUNDANCY IN SHELL : 12.90 REMARK 200 R MERGE FOR SHELL (I) : 0.58400 REMARK 200 R SYM FOR SHELL (I) : 0.58400 REMARK 200 <I/SIGMA(I)> FOR SHELL : 5.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 3350, 0.1 TRIS PH 8.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 18.56500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 32.04900 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.51400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 32.04900 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 18.56500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 30.51400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 HIS A 160 REMARK 465 HIS A 161 REMARK 465 HIS A 162 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 104 -34.66 -141.75 REMARK 500 GLN A 121 52.13 -100.21 REMARK 500 GLN A 121 51.29 -99.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 502 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4EQA RELATED DB: PDB DBREF 4EQ8 A 1 154 UNP Q9I2Q1 Q9I2Q1_PSEAE 1 154 SEQADV 4EQ8 LEU A 155 UNP Q9I2Q1 EXPRESSION TAG SEQADV 4EQ8 GLU A 156 UNP Q9I2Q1 EXPRESSION TAG SEQADV 4EQ8 HIS A 157 UNP Q9I2Q1 EXPRESSION TAG SEQADV 4EQ8 HIS A 158 UNP Q9I2Q1 EXPRESSION TAG SEQADV 4EQ8 HIS A 159 UNP Q9I2Q1 EXPRESSION TAG SEQADV 4EQ8 HIS A 160 UNP Q9I2Q1 EXPRESSION TAG SEQADV 4EQ8 HIS A 161 UNP Q9I2Q1 EXPRESSION TAG SEQADV 4EQ8 HIS A 162 UNP Q9I2Q1 EXPRESSION TAG SEQRES 1 A 162 MSE ASP SER LEU ASP GLN CYS ILE VAL ASN ALA CYS LYS SEQRES 2 A 162 ASN SER TRP ASP LYS SER TYR LEU ALA GLY THR PRO ASN SEQRES 3 A 162 LYS ASP ASN CYS SER GLY PHE VAL GLN SER VAL ALA ALA SEQRES 4 A 162 GLU LEU GLY VAL PRO MSE PRO ARG GLY ASN ALA ASN ALA SEQRES 5 A 162 MSE VAL ASP GLY LEU GLU GLN SER TRP THR LYS LEU ALA SEQRES 6 A 162 SER GLY ALA GLU ALA ALA GLN LYS ALA ALA GLN GLY PHE SEQRES 7 A 162 LEU VAL ILE ALA GLY LEU LYS GLY ARG THR TYR GLY HIS SEQRES 8 A 162 VAL ALA VAL VAL ILE SER GLY PRO LEU TYR ARG GLN LYS SEQRES 9 A 162 TYR PRO MSE CYS TRP CYS GLY SER ILE ALA GLY ALA VAL SEQRES 10 A 162 GLY GLN SER GLN GLY LEU LYS SER VAL GLY GLN VAL TRP SEQRES 11 A 162 ASN ARG THR ASP ARG ASP ARG LEU ASN TYR TYR VAL TYR SEQRES 12 A 162 SER LEU ALA SER CYS SER LEU PRO ARG ALA SER LEU GLU SEQRES 13 A 162 HIS HIS HIS HIS HIS HIS MODRES 4EQ8 MSE A 45 MET SELENOMETHIONINE MODRES 4EQ8 MSE A 53 MET SELENOMETHIONINE MODRES 4EQ8 MSE A 107 MET SELENOMETHIONINE HET MSE A 45 13 HET MSE A 53 8 HET MSE A 107 8 HET GOL A 501 6 HET GOL A 502 6 HETNAM MSE SELENOMETHIONINE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 3(C5 H11 N O2 SE) FORMUL 2 GOL 2(C3 H8 O3) FORMUL 4 HOH *203(H2 O) HELIX 1 1 ASP A 5 TRP A 16 1 12 HELIX 2 2 PRO A 25 ASP A 28 5 4 HELIX 3 3 ASN A 29 GLY A 42 1 14 HELIX 4 4 ASN A 49 TRP A 61 1 13 HELIX 5 5 SER A 66 GLN A 76 1 11 HELIX 6 6 LEU A 100 LYS A 104 5 5 HELIX 7 7 GLY A 115 GLN A 119 5 5 HELIX 8 8 VAL A 126 TRP A 130 1 5 SHEET 1 A 6 THR A 62 LEU A 64 0 SHEET 2 A 6 ASN A 139 VAL A 142 -1 O TYR A 140 N LEU A 64 SHEET 3 A 6 VAL A 80 LEU A 84 -1 N ILE A 81 O TYR A 141 SHEET 4 A 6 HIS A 91 VAL A 95 -1 O VAL A 95 N VAL A 80 SHEET 5 A 6 MSE A 107 CYS A 110 -1 O TRP A 109 N VAL A 94 SHEET 6 A 6 SER A 120 SER A 125 -1 O SER A 120 N CYS A 110 SSBOND 1 CYS A 7 CYS A 148 1555 1555 2.05 LINK C PRO A 44 N MSE A 45 1555 1555 1.33 LINK C MSE A 45 N PRO A 46 1555 1555 1.34 LINK C ALA A 52 N MSE A 53 1555 1555 1.33 LINK C MSE A 53 N VAL A 54 1555 1555 1.33 LINK C PRO A 106 N MSE A 107 1555 1555 1.33 LINK C MSE A 107 N CYS A 108 1555 1555 1.33 SITE 1 AC1 9 LEU A 41 VAL A 43 LYS A 124 GLN A 128 SITE 2 AC1 9 SER A 147 HOH A 671 HOH A 772 HOH A 773 SITE 3 AC1 9 HOH A 796 SITE 1 AC2 8 SER A 60 TRP A 61 THR A 62 VAL A 142 SITE 2 AC2 8 TYR A 143 SER A 144 HIS A 157 HIS A 158 CRYST1 37.130 61.028 64.098 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026932 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016386 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015601 0.00000