HEADER HYDROLASE 19-APR-12 4EQN TITLE CRYSTAL STRUCTURE OF STAPHYLOCOCCAL NUCLEASE VARIANT DELTA+PHS TITLE 2 V23E/I72K AT CRYOGENIC TEMPERATURE COMPND MOL_ID: 1; COMPND 2 MOLECULE: THERMONUCLEASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: NUCLEASE A (UNP RESIDUES 83-231); COMPND 5 SYNONYM: TNASE, MICROCOCCAL NUCLEASE, STAPHYLOCOCCAL NUCLEASE; COMPND 6 EC: 3.1.31.1; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 1280; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET24A+ KEYWDS STAPHYLOCOCCAL NUCLEASE, HYPERSTABLE, PDTP, IONIZABLE GROUP, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.C.ROBINSON,J.L.SCHLESSMAN,A.HEROUX,B.GARCIA-MORENO E. REVDAT 3 13-SEP-23 4EQN 1 REMARK SEQADV LINK REVDAT 2 06-MAR-13 4EQN 1 JRNL TITLE REVDAT 1 02-MAY-12 4EQN 0 JRNL AUTH A.C.ROBINSON,J.L.SCHLESSMAN,A.HEROUX,B.GARCIA-MORENO E. JRNL TITL CRYSTAL STRUCTURE OF STAPHYLOCOCCAL NUCLEASE VARIANT JRNL TITL 2 DELTA+PHS V23E/I72K AT CRYOGENIC TEMPERATURE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.02 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 13621 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.214 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 673 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 793 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 83.85 REMARK 3 BIN R VALUE (WORKING SET) : 0.1960 REMARK 3 BIN FREE R VALUE SET COUNT : 38 REMARK 3 BIN FREE R VALUE : 0.2200 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1045 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 26 REMARK 3 SOLVENT ATOMS : 123 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.03 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.07000 REMARK 3 B22 (A**2) : -0.10000 REMARK 3 B33 (A**2) : 0.03000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.127 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.122 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.071 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.521 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.930 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1145 ; 0.020 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1551 ; 1.747 ; 1.999 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 142 ; 6.320 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 55 ;31.715 ;25.455 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 228 ;16.289 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 5 ;14.961 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 163 ; 0.155 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 852 ; 0.013 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 668 ; 1.363 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1076 ; 2.110 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 477 ; 3.562 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 467 ; 5.321 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 6 A 12 REMARK 3 ORIGIN FOR THE GROUP (A): 12.2940 -1.3480 -22.5650 REMARK 3 T TENSOR REMARK 3 T11: 0.0562 T22: 0.0641 REMARK 3 T33: 0.0675 T12: 0.0027 REMARK 3 T13: 0.0107 T23: 0.0111 REMARK 3 L TENSOR REMARK 3 L11: 0.1408 L22: 4.2329 REMARK 3 L33: 3.5902 L12: 0.6600 REMARK 3 L13: 0.4080 L23: 0.3212 REMARK 3 S TENSOR REMARK 3 S11: -0.0356 S12: 0.0197 S13: -0.0126 REMARK 3 S21: -0.2512 S22: 0.0265 S23: -0.1129 REMARK 3 S31: -0.0706 S32: 0.1305 S33: 0.0091 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 13 A 27 REMARK 3 ORIGIN FOR THE GROUP (A): 1.2530 -3.2370 -10.4370 REMARK 3 T TENSOR REMARK 3 T11: 0.0738 T22: 0.0786 REMARK 3 T33: 0.0831 T12: 0.0164 REMARK 3 T13: 0.0077 T23: -0.0035 REMARK 3 L TENSOR REMARK 3 L11: 0.3428 L22: 0.9999 REMARK 3 L33: 0.2721 L12: -0.2116 REMARK 3 L13: -0.0157 L23: -0.4723 REMARK 3 S TENSOR REMARK 3 S11: 0.0273 S12: 0.0001 S13: -0.0119 REMARK 3 S21: 0.0926 S22: 0.0189 S23: 0.1166 REMARK 3 S31: -0.0627 S32: -0.0216 S33: -0.0462 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 28 A 33 REMARK 3 ORIGIN FOR THE GROUP (A): -1.9190 1.6570 -17.3330 REMARK 3 T TENSOR REMARK 3 T11: 0.0975 T22: 0.0637 REMARK 3 T33: 0.0952 T12: 0.0084 REMARK 3 T13: 0.0159 T23: 0.0066 REMARK 3 L TENSOR REMARK 3 L11: 0.5342 L22: 9.9369 REMARK 3 L33: 1.2666 L12: -2.0000 REMARK 3 L13: 0.7857 L23: -3.4521 REMARK 3 S TENSOR REMARK 3 S11: 0.0364 S12: 0.0800 S13: -0.0261 REMARK 3 S21: -0.3229 S22: -0.0296 S23: -0.1157 REMARK 3 S31: 0.1063 S32: 0.0596 S33: -0.0068 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 34 A 50 REMARK 3 ORIGIN FOR THE GROUP (A): 2.3570 -15.1030 -11.9050 REMARK 3 T TENSOR REMARK 3 T11: 0.0469 T22: 0.0600 REMARK 3 T33: 0.0808 T12: -0.0023 REMARK 3 T13: 0.0130 T23: 0.0202 REMARK 3 L TENSOR REMARK 3 L11: 0.3694 L22: 1.1592 REMARK 3 L33: 1.9064 L12: -0.1618 REMARK 3 L13: 0.5861 L23: -0.2532 REMARK 3 S TENSOR REMARK 3 S11: 0.0056 S12: -0.0406 S13: -0.0520 REMARK 3 S21: 0.0796 S22: 0.0616 S23: 0.1351 REMARK 3 S31: 0.0354 S32: -0.1345 S33: -0.0671 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 51 A 70 REMARK 3 ORIGIN FOR THE GROUP (A): 6.0070 -12.1610 -2.6910 REMARK 3 T TENSOR REMARK 3 T11: 0.0644 T22: 0.0895 REMARK 3 T33: 0.0593 T12: 0.0054 REMARK 3 T13: 0.0154 T23: 0.0040 REMARK 3 L TENSOR REMARK 3 L11: 0.6721 L22: 3.4558 REMARK 3 L33: 1.5238 L12: 1.1929 REMARK 3 L13: -0.5076 L23: -1.7078 REMARK 3 S TENSOR REMARK 3 S11: 0.0557 S12: -0.1501 S13: 0.0015 REMARK 3 S21: 0.1129 S22: -0.0395 S23: 0.0742 REMARK 3 S31: -0.0837 S32: 0.0425 S33: -0.0162 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 71 A 80 REMARK 3 ORIGIN FOR THE GROUP (A): 8.7880 -4.6550 -21.0060 REMARK 3 T TENSOR REMARK 3 T11: 0.0552 T22: 0.0710 REMARK 3 T33: 0.0615 T12: 0.0018 REMARK 3 T13: 0.0043 T23: 0.0150 REMARK 3 L TENSOR REMARK 3 L11: 0.9112 L22: 2.4899 REMARK 3 L33: 5.0435 L12: 0.5014 REMARK 3 L13: 0.7198 L23: 2.1417 REMARK 3 S TENSOR REMARK 3 S11: -0.0198 S12: 0.1303 S13: 0.1273 REMARK 3 S21: -0.0880 S22: -0.0073 S23: 0.0890 REMARK 3 S31: -0.1445 S32: 0.0463 S33: 0.0270 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 81 A 96 REMARK 3 ORIGIN FOR THE GROUP (A): 3.5060 -8.0450 -18.6050 REMARK 3 T TENSOR REMARK 3 T11: 0.0516 T22: 0.0744 REMARK 3 T33: 0.0627 T12: 0.0055 REMARK 3 T13: 0.0062 T23: 0.0037 REMARK 3 L TENSOR REMARK 3 L11: 1.5934 L22: 0.9438 REMARK 3 L33: 0.2943 L12: 0.5621 REMARK 3 L13: 0.0207 L23: -0.0117 REMARK 3 S TENSOR REMARK 3 S11: 0.0431 S12: 0.1400 S13: 0.0714 REMARK 3 S21: 0.0098 S22: 0.0114 S23: 0.0866 REMARK 3 S31: 0.0333 S32: 0.0079 S33: -0.0545 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 97 A 108 REMARK 3 ORIGIN FOR THE GROUP (A): 13.8590 -14.5120 -9.8990 REMARK 3 T TENSOR REMARK 3 T11: 0.0607 T22: 0.0711 REMARK 3 T33: 0.0612 T12: 0.0034 REMARK 3 T13: 0.0001 T23: -0.0050 REMARK 3 L TENSOR REMARK 3 L11: 0.6941 L22: 1.6854 REMARK 3 L33: 0.9245 L12: 0.1670 REMARK 3 L13: 0.2204 L23: -0.8100 REMARK 3 S TENSOR REMARK 3 S11: 0.0262 S12: -0.0158 S13: 0.0042 REMARK 3 S21: 0.0523 S22: -0.0074 S23: -0.0490 REMARK 3 S31: -0.0545 S32: 0.0653 S33: -0.0188 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 109 A 124 REMARK 3 ORIGIN FOR THE GROUP (A): 10.0810 -18.3610 -22.0630 REMARK 3 T TENSOR REMARK 3 T11: 0.0627 T22: 0.0680 REMARK 3 T33: 0.0561 T12: -0.0015 REMARK 3 T13: -0.0045 T23: -0.0077 REMARK 3 L TENSOR REMARK 3 L11: 1.5159 L22: 1.3367 REMARK 3 L33: 0.6943 L12: 0.2464 REMARK 3 L13: -0.5675 L23: -0.5157 REMARK 3 S TENSOR REMARK 3 S11: 0.0001 S12: 0.1338 S13: -0.0019 REMARK 3 S21: -0.1228 S22: 0.0009 S23: 0.0687 REMARK 3 S31: 0.0903 S32: -0.0242 S33: -0.0009 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 125 A 141 REMARK 3 ORIGIN FOR THE GROUP (A): 15.7050 -24.6270 -9.2770 REMARK 3 T TENSOR REMARK 3 T11: 0.0522 T22: 0.0633 REMARK 3 T33: 0.0668 T12: 0.0013 REMARK 3 T13: -0.0037 T23: -0.0103 REMARK 3 L TENSOR REMARK 3 L11: 1.0828 L22: 1.2250 REMARK 3 L33: 3.3916 L12: -0.5069 REMARK 3 L13: -0.2966 L23: -0.2046 REMARK 3 S TENSOR REMARK 3 S11: -0.0077 S12: -0.0278 S13: -0.0356 REMARK 3 S21: 0.0769 S22: 0.0330 S23: 0.0133 REMARK 3 S31: 0.1256 S32: 0.0558 S33: -0.0252 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 3 U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 4EQN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-APR-12. REMARK 100 THE DEPOSITION ID IS D_1000071951. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-SEP-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X25 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.10 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MERIDIONALLY-BENT FUSED SILICA REMARK 200 MIRROR WITH PALLADIUM AND REMARK 200 UNCOATED STRIPES VERTICALLY- REMARK 200 FOCUSING AT 6.6:1 DEMAGNIFICATION REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 13666 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 200 DATA REDUNDANCY : 10.60 REMARK 200 R MERGE (I) : 0.06400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.83 REMARK 200 COMPLETENESS FOR SHELL (%) : 83.5 REMARK 200 DATA REDUNDANCY IN SHELL : 6.00 REMARK 200 R MERGE FOR SHELL (I) : 0.15200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.2.1 REMARK 200 STARTING MODEL: PDB ENTRY 3BDC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.42 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% MPD, 25 MM POTASSIUM PHOSPHATE, REMARK 280 CALCIUM CHLORIDE, PDTP, PH 7.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 16.28350 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 36.02300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.54050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 36.02300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 16.28350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 30.54050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 1 REMARK 465 THR A 2 REMARK 465 SER A 3 REMARK 465 THR A 4 REMARK 465 LYS A 5 REMARK 465 GLU A 142 REMARK 465 ASP A 143 REMARK 465 ASN A 144 REMARK 465 ALA A 145 REMARK 465 ASP A 146 REMARK 465 SER A 147 REMARK 465 GLY A 148 REMARK 465 GLN A 149 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 18 -65.94 -128.75 REMARK 500 TYR A 54 -4.72 67.19 REMARK 500 ASP A 77 -159.26 -92.34 REMARK 500 ASN A 118 50.64 -151.05 REMARK 500 ASN A 138 -112.00 50.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 201 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 21 OD2 REMARK 620 2 ASP A 40 OD1 81.4 REMARK 620 3 THR A 41 O 89.4 79.7 REMARK 620 4 HOH A 302 O 81.7 140.9 65.2 REMARK 620 5 HOH A 326 O 74.4 134.1 137.1 73.2 REMARK 620 6 HOH A 378 O 151.9 106.4 118.3 105.0 81.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE THP A 202 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3BDC RELATED DB: PDB REMARK 900 RELATED ID: 3QOL RELATED DB: PDB REMARK 900 RELATED ID: 2RBM RELATED DB: PDB REMARK 900 RELATED ID: 4EQO RELATED DB: PDB REMARK 900 RELATED ID: 4EQP RELATED DB: PDB DBREF 4EQN A 1 149 UNP P00644 NUC_STAAU 83 231 SEQADV 4EQN GLU A 23 UNP P00644 VAL 105 ENGINEERED MUTATION SEQADV 4EQN A UNP P00644 THR 126 DELETION SEQADV 4EQN A UNP P00644 LYS 127 DELETION SEQADV 4EQN A UNP P00644 HIS 128 DELETION SEQADV 4EQN A UNP P00644 PRO 129 DELETION SEQADV 4EQN A UNP P00644 LYS 130 DELETION SEQADV 4EQN A UNP P00644 LYS 131 DELETION SEQADV 4EQN PHE A 50 UNP P00644 GLY 132 ENGINEERED MUTATION SEQADV 4EQN ASN A 51 UNP P00644 VAL 133 ENGINEERED MUTATION SEQADV 4EQN LYS A 72 UNP P00644 ILE 154 ENGINEERED MUTATION SEQADV 4EQN GLY A 117 UNP P00644 PRO 199 ENGINEERED MUTATION SEQADV 4EQN LEU A 124 UNP P00644 HIS 206 ENGINEERED MUTATION SEQADV 4EQN ALA A 128 UNP P00644 SER 210 ENGINEERED MUTATION SEQRES 1 A 143 ALA THR SER THR LYS LYS LEU HIS LYS GLU PRO ALA THR SEQRES 2 A 143 LEU ILE LYS ALA ILE ASP GLY ASP THR GLU LYS LEU MET SEQRES 3 A 143 TYR LYS GLY GLN PRO MET THR PHE ARG LEU LEU LEU VAL SEQRES 4 A 143 ASP THR PRO GLU PHE ASN GLU LYS TYR GLY PRO GLU ALA SEQRES 5 A 143 SER ALA PHE THR LYS LYS MET VAL GLU ASN ALA LYS LYS SEQRES 6 A 143 LYS GLU VAL GLU PHE ASP LYS GLY GLN ARG THR ASP LYS SEQRES 7 A 143 TYR GLY ARG GLY LEU ALA TYR ILE TYR ALA ASP GLY LYS SEQRES 8 A 143 MET VAL ASN GLU ALA LEU VAL ARG GLN GLY LEU ALA LYS SEQRES 9 A 143 VAL ALA TYR VAL TYR LYS GLY ASN ASN THR HIS GLU GLN SEQRES 10 A 143 LEU LEU ARG LYS ALA GLU ALA GLN ALA LYS LYS GLU LYS SEQRES 11 A 143 LEU ASN ILE TRP SER GLU ASP ASN ALA ASP SER GLY GLN HET CA A 201 1 HET THP A 202 25 HETNAM CA CALCIUM ION HETNAM THP THYMIDINE-3',5'-DIPHOSPHATE FORMUL 2 CA CA 2+ FORMUL 3 THP C10 H16 N2 O11 P2 FORMUL 4 HOH *123(H2 O) HELIX 1 1 TYR A 54 ASN A 68 1 15 HELIX 2 2 VAL A 99 GLN A 106 1 8 HELIX 3 3 TYR A 115 ASN A 119 5 5 HELIX 4 4 HIS A 121 GLU A 135 1 15 HELIX 5 5 LEU A 137 SER A 141 5 5 SHEET 1 A 6 LYS A 9 PRO A 11 0 SHEET 2 A 6 LYS A 72 PHE A 76 -1 O VAL A 74 N GLU A 10 SHEET 3 A 6 GLY A 88 ALA A 94 -1 O TYR A 93 N GLU A 73 SHEET 4 A 6 GLN A 30 LEU A 36 1 N ARG A 35 O GLY A 88 SHEET 5 A 6 THR A 22 TYR A 27 -1 N GLU A 23 O PHE A 34 SHEET 6 A 6 THR A 13 ASP A 19 -1 N THR A 13 O MET A 26 SHEET 1 B 4 LYS A 9 PRO A 11 0 SHEET 2 B 4 LYS A 72 PHE A 76 -1 O VAL A 74 N GLU A 10 SHEET 3 B 4 GLY A 88 ALA A 94 -1 O TYR A 93 N GLU A 73 SHEET 4 B 4 LYS A 97 MET A 98 -1 O LYS A 97 N ALA A 94 SHEET 1 C 2 VAL A 39 ASP A 40 0 SHEET 2 C 2 LYS A 110 VAL A 111 -1 O LYS A 110 N ASP A 40 LINK OD2 ASP A 21 CA CA A 201 1555 1555 2.82 LINK OD1 ASP A 40 CA CA A 201 1555 1555 2.67 LINK O THR A 41 CA CA A 201 1555 1555 2.71 LINK CA CA A 201 O HOH A 302 1555 1555 2.83 LINK CA CA A 201 O HOH A 326 1555 1555 2.78 LINK CA CA A 201 O HOH A 378 1555 1555 3.08 SITE 1 AC1 7 ASP A 21 ASP A 40 THR A 41 THP A 202 SITE 2 AC1 7 HOH A 302 HOH A 326 HOH A 378 SITE 1 AC2 17 ARG A 35 ASP A 40 ASP A 83 LYS A 84 SITE 2 AC2 17 TYR A 85 ARG A 87 LEU A 89 TYR A 113 SITE 3 AC2 17 LYS A 127 CA A 201 HOH A 307 HOH A 326 SITE 4 AC2 17 HOH A 336 HOH A 343 HOH A 350 HOH A 385 SITE 5 AC2 17 HOH A 387 CRYST1 32.567 61.081 72.046 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.030706 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016372 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013880 0.00000